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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT934425 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1 9 crisprs RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,csa3,cas7b,cas8b1,PD-DExK 2 12 22 0

Results visualization

1. NZ_LT934425
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_1 93784-94427 TypeIII NA
8 spacers
cas2,cas1,RT,csx1,csm5gr7,csm4gr5,csm3gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_2 109130-109914 TypeIII NA
10 spacers
cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_3 489910-490524 Unclear NA
9 spacers
cas2,cas1,cas4

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_4 491955-493063 Unclear NA
17 spacers
cas2,cas1,cas4,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_5 495108-496174 Unclear NA
16 spacers
cas2,cas1,cas4,cas5,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_6 498283-498766 Unclear NA
7 spacers
cas2,cas1,cas4,cas5,cas7,cas8a4,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_7 2235157-2235229 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_8 2300071-2300146 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT934425_9 2962768-2969923 TypeI-B NA
107 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT934425_2 2.5|109471|36|NZ_LT934425|CRISPRCasFinder,CRT,PILER-CR 109471-109506 36 NZ_LT934425.1 1837288-1837323 0 1.0
NZ_LT934425_3 3.7|490331|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 490331-490366 36 NZ_LT934425.1 2982471-2982506 0 1.0

1. spacer 2.5|109471|36|NZ_LT934425|CRISPRCasFinder,CRT,PILER-CR matches to position: 1837288-1837323, mismatch: 0, identity: 1.0

caaaaagaagattttcctgatgcaaaagtatgtatc	CRISPR spacer
caaaaagaagattttcctgatgcaaaagtatgtatc	Protospacer
************************************

2. spacer 3.7|490331|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to position: 2982471-2982506, mismatch: 0, identity: 1.0

gcctttaaaaccaatattattgcacttcttgcaccc	CRISPR spacer
gcctttaaaaccaatattattgcacttcttgcaccc	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT934425_7 7.1|2235181|25|NZ_LT934425|CRISPRCasFinder 2235181-2235205 25 KY271401 Klebsiella phage 1 LV-2017, complete genome 2625-2649 3 0.88
NZ_LT934425_7 7.1|2235181|25|NZ_LT934425|CRISPRCasFinder 2235181-2235205 25 MN698242 Pelagibacter phage HTVC103P, complete genome 47645-47669 5 0.8
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 NZ_CP018742 Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence 154071-154106 5 0.861
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 NZ_CP009059 Borreliella afzelii K78 plasmid lp54, complete sequence 18055-18089 6 0.829
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 NC_017241 Borreliella afzelii PKo plasmid lp54, complete sequence 17919-17953 6 0.829
NZ_LT934425_4 4.1|491984|32|NZ_LT934425|PILER-CR 491984-492015 32 MH648955 Microviridae sp. isolate ctbi001, complete genome 4916-4947 7 0.781
NZ_LT934425_4 4.15|492885|36|NZ_LT934425|PILER-CR 492885-492920 36 KF302036 UNVERIFIED: Pseudoalteromonas phage HS2, complete genome 3186-3221 8 0.778
NZ_LT934425_4 4.31|492872|36|NZ_LT934425|CRT,CRISPRCasFinder 492872-492907 36 KF302036 UNVERIFIED: Pseudoalteromonas phage HS2, complete genome 3186-3221 8 0.778
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 NZ_CP031220 Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence 79800-79834 8 0.771
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 NZ_CP013615 Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence 399417-399451 8 0.771
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 NZ_CP022465 Enterocloster bolteae strain ATCC BAA-613 plasmid unnamed, complete sequence 18638-18673 8 0.778
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 MK250029 Prevotella phage Lak-C1, complete genome 307038-307073 8 0.778
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 MK250019 Prevotella phage Lak-A2, complete genome 261678-261713 8 0.778
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 MK448902 Streptococcus phage Javan308, complete genome 11391-11426 8 0.778
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 MN657160 Flavobacterium sp. strain ANT_P5B plasmid pA5BP1, complete sequence 6941-6975 9 0.743
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 MK250016 Prevotella phage Lak-A1, complete genome 349459-349493 9 0.743
NZ_LT934425_9 9.69|2967322|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2967322-2967358 37 MN070121 Salmonella phage Shemara, complete genome 21124-21160 9 0.757
NZ_LT934425_9 9.76|2967793|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2967793-2967828 36 NZ_CP007066 Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence 11559-11594 9 0.75
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 NZ_CP046370 Spiroplasma citri strain BR12 plasmid pScpBR12-2, complete sequence 1168-1203 9 0.75
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 KC430106 Bacillus phage BPS10C, complete genome 158072-158107 9 0.75
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 NZ_CP009214 Borreliella afzelii Tom3107 plasmid lp54, complete sequence 2006-2040 10 0.714
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 NZ_CP009059 Borreliella afzelii K78 plasmid lp54, complete sequence 55244-55278 10 0.714
NZ_LT934425_6 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT 498377-498411 35 NC_017241 Borreliella afzelii PKo plasmid lp54, complete sequence 56089-56123 10 0.714
NZ_LT934425_9 9.55|2966394|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2966394-2966429 36 NZ_CP028887 Borrelia turcica IST7 plasmid lp32-B, complete sequence 1079-1114 10 0.722
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 NZ_CP047439 Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence 39902-39937 10 0.722
NZ_LT934425_9 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR 2968727-2968762 36 NZ_CP047440 Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence 65064-65099 10 0.722
NZ_LT934425_9 9.42|2965530|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2965530-2965566 37 MH319731 Marine virus AG-345-E02 Ga0172268_11 genomic sequence 55634-55670 11 0.703
NZ_LT934425_9 9.42|2965530|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2965530-2965566 37 AY939844 Prochlorococcus phage P-SSM2, complete genome 124870-124906 11 0.703
NZ_LT934425_9 9.42|2965530|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2965530-2965566 37 HQ632825 Prochlorococcus phage P-SSM5 genomic sequence 214155-214191 11 0.703
NZ_LT934425_9 9.51|2966125|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2966125-2966161 37 NZ_AY589570 Escherichia coli strain 904J plasmid pEC904, complete sequence 534-570 11 0.703
NZ_LT934425_9 9.67|2967189|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2967189-2967224 36 NZ_CP024012 Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence 27504-27539 11 0.694
NZ_LT934425_9 9.67|2967189|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder 2967189-2967224 36 NZ_CP024012 Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence 176828-176863 11 0.694

1. spacer 7.1|2235181|25|NZ_LT934425|CRISPRCasFinder matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 3, identity: 0.88

atttaatgaaagaaaaccaccaaac	CRISPR spacer
ttttaatgaaacaaaaccaccaacc	Protospacer
 ********** *********** *

2. spacer 7.1|2235181|25|NZ_LT934425|CRISPRCasFinder matches to MN698242 (Pelagibacter phage HTVC103P, complete genome) position: , mismatch: 5, identity: 0.8

atttaatgaaagaaaaccaccaaac	CRISPR spacer
ttttaatgaatgaaaaccaccatga	Protospacer
 ********* *********** . 

3. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 5, identity: 0.861

--attttaaattattttattattttattattttaatat	CRISPR spacer
taattttta--tattttaatatttttttattttaatat	Protospacer
  ***** *  ******* ****** ************

4. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009059 (Borreliella afzelii K78 plasmid lp54, complete sequence) position: , mismatch: 6, identity: 0.829

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
taaaatataaaaaataaaatattggattgtcgatg	Protospacer
********.*************** *** *. ** 

5. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to NC_017241 (Borreliella afzelii PKo plasmid lp54, complete sequence) position: , mismatch: 6, identity: 0.829

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
taaaatataaaaaataaaatattggattgtcgatg	Protospacer
********.*************** *** *. ** 

6. spacer 4.1|491984|32|NZ_LT934425|PILER-CR matches to MH648955 (Microviridae sp. isolate ctbi001, complete genome) position: , mismatch: 7, identity: 0.781

aattaccgtcgtatctttccccgttttccggg	CRISPR spacer
ccttctcgtcgtatctttcccggtattccggt	Protospacer
  ** .*************** ** ****** 

7. spacer 4.15|492885|36|NZ_LT934425|PILER-CR matches to KF302036 (UNVERIFIED: Pseudoalteromonas phage HS2, complete genome) position: , mismatch: 8, identity: 0.778

attattattgtttgtggttagtcgttggttgatcgt	CRISPR spacer
tacattattgtttgtggttacttgttggttacttgt	Protospacer
  .***************** *.*******. *.**

8. spacer 4.31|492872|36|NZ_LT934425|CRT,CRISPRCasFinder matches to KF302036 (UNVERIFIED: Pseudoalteromonas phage HS2, complete genome) position: , mismatch: 8, identity: 0.778

attattattgtttgtggttagtcgttggttgatcgt	CRISPR spacer
tacattattgtttgtggttacttgttggttacttgt	Protospacer
  .***************** *.*******. *.**

9. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 8, identity: 0.771

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
aaaaaaatgaaaaataaaataatgtatttaagaac	Protospacer
 **** *************** *******   * .

10. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 8, identity: 0.771

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
tttacattcaaaaataaaagattgtaatttttatt	Protospacer
*  *   * ********** ****** ********

11. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022465 (Enterocloster bolteae strain ATCC BAA-613 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

attttaaattattttattattttattattttaatat	CRISPR spacer
tctttttgtttttttattattttgttattttaataa	Protospacer
 .***  .** ************.*********** 

12. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 8, identity: 0.778

attttaaattattttattattttattattttaatat	CRISPR spacer
ttattaaattattttattcttatattattatgcaat	Protospacer
 * *************** ** ******* *.  **

13. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 8, identity: 0.778

attttaaattattttattattttattattttaatat	CRISPR spacer
ttattaaattattttattcttatattattatgcaat	Protospacer
 * *************** ** ******* *.  **

14. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to MK448902 (Streptococcus phage Javan308, complete genome) position: , mismatch: 8, identity: 0.778

attttaaattattttattattttattattttaatat	CRISPR spacer
atatttttatattttatttttttattatttcaatag	Protospacer
** **    ********* ***********.**** 

15. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to MN657160 (Flavobacterium sp. strain ANT_P5B plasmid pA5BP1, complete sequence) position: , mismatch: 9, identity: 0.743

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
caattattgaaaaataaaatattgaattgttttta	Protospacer
.**    ***************** *** *** * 

16. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.743

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
tctaaaccagaaaataaaatattgaatattttatt	Protospacer
*  **  ...************** ** *******

17. spacer 9.69|2967322|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to MN070121 (Salmonella phage Shemara, complete genome) position: , mismatch: 9, identity: 0.757

taccggcatttcaaaaagaagtagaagattacttcaa	CRISPR spacer
tgcttgctgttcaaaaggaaatagaagattacttcgg	Protospacer
*.*. **  *******.***.**************..

18. spacer 9.76|2967793|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007066 (Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence) position: , mismatch: 9, identity: 0.75

aattcttaaaaaagattttcctaaagaaagattaaa	CRISPR spacer
tattgaaaaaaaagattttctaaaagaaagattttt	Protospacer
 ***   *************. ***********   

19. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP046370 (Spiroplasma citri strain BR12 plasmid pScpBR12-2, complete sequence) position: , mismatch: 9, identity: 0.75

attttaaattattttattattttattattttaatat	CRISPR spacer
atgaaaatttattttatttttttattatttttttta	Protospacer
**   ** ********** ************  *  

20. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to KC430106 (Bacillus phage BPS10C, complete genome) position: , mismatch: 9, identity: 0.75

attttaaattattttattattttattattttaatat	CRISPR spacer
atttttaattattttatttttttatttgacaaaggt	Protospacer
***** ************ *******   . ** .*

21. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009214 (Borreliella afzelii Tom3107 plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.714

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
taaaatattaaaaataaaatattttaaataaggag	Protospacer
******** ************** **  *   .  

22. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009059 (Borreliella afzelii K78 plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.714

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
taaaatattaaaaataaaatattttaaataaggag	Protospacer
******** ************** **  *   .  

23. spacer 6.2|498377|35|NZ_LT934425|PILER-CR,CRISPRCasFinder,CRT matches to NC_017241 (Borreliella afzelii PKo plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.714

taaaatatgaaaaataaaatattgtattttttatt	CRISPR spacer
taaaatattaaaaataaaatattttaaataaggag	Protospacer
******** ************** **  *   .  

24. spacer 9.55|2966394|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028887 (Borrelia turcica IST7 plasmid lp32-B, complete sequence) position: , mismatch: 10, identity: 0.722

ggcagttctacattatatgtctttttctttaacact	CRISPR spacer
tctatatctacattatatctctttttctctaaaata	Protospacer
  .*  ************ *********.*** *. 

25. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 10, identity: 0.722

attttaaattattttattattttattattttaatat	CRISPR spacer
aaagcaaattattttattgttttataattttgttgc	Protospacer
*   .*************.****** *****. *..

26. spacer 9.90|2968727|36|NZ_LT934425|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 10, identity: 0.722

attttaaattattttattattttattattttaatat	CRISPR spacer
aaagcaaattattttattgttttataattttgttgc	Protospacer
*   .*************.****** *****. *..

27. spacer 9.42|2965530|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to MH319731 (Marine virus AG-345-E02 Ga0172268_11 genomic sequence) position: , mismatch: 11, identity: 0.703

ataaatcacataacattaatatatcattatcaatata	CRISPR spacer
ttcttagccataacattaatatatccttattaataat	Protospacer
 *      ***************** ****.****  

28. spacer 9.42|2965530|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to AY939844 (Prochlorococcus phage P-SSM2, complete genome) position: , mismatch: 11, identity: 0.703

ataaatcacataacattaatatatcattatcaatata	CRISPR spacer
ttcttagccataacattaatatatccttattaataat	Protospacer
 *      ***************** ****.****  

29. spacer 9.42|2965530|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to HQ632825 (Prochlorococcus phage P-SSM5 genomic sequence) position: , mismatch: 11, identity: 0.703

ataaatcacataacattaatatatcattatcaatata	CRISPR spacer
ttcttagccataacattaatatatccttattaataat	Protospacer
 *      ***************** ****.****  

30. spacer 9.51|2966125|37|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AY589570 (Escherichia coli strain 904J plasmid pEC904, complete sequence) position: , mismatch: 11, identity: 0.703

ttaaa---tttagaatgggatttcgtcaaattttggttct	CRISPR spacer
---aattttttagaatgggatatcgtcaattttttcagac	Protospacer
   **   ************* ******* ****     .

31. spacer 9.67|2967189|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024012 (Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.694

gggcattgcacgcacaagaatggtttttaggaaaaa	CRISPR spacer
attaatttcacgcataagaatggtttttagattacg	Protospacer
.   *** ******.***************.  * .

32. spacer 9.67|2967189|36|NZ_LT934425|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024012 (Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.694

gggcattgcacgcacaagaatggtttttaggaaaaa	CRISPR spacer
attaatttcacgcataagaatggtttttagattacg	Protospacer
.   *** ******.***************.  * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 47206 : 86912 43 Pseudomonas_phage(28.57%) integrase,transposase attL 53799:53858|attR 86913:88058
DBSCAN-SWA_2 111830 : 173104 60 Staphylococcus_phage(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_3 183857 : 240748 53 Staphylococcus_phage(16.67%) integrase,tRNA,transposase attL 170502:170524|attR 236972:236994
DBSCAN-SWA_4 443226 : 514322 57 Mycobacterium_phage(20.0%) integrase,transposase attL 489805:489831|attR 516015:516041
DBSCAN-SWA_5 1169152 : 1220127 48 Acinetobacter_phage(28.57%) integrase,tRNA,transposase attL 1197694:1197715|attR 1214660:1214681
DBSCAN-SWA_6 1410293 : 1465357 41 Bacillus_thuringiensis_phage(16.67%) protease,transposase NA
DBSCAN-SWA_7 1676436 : 1740066 59 Staphylococcus_phage(28.57%) integrase,protease,tRNA,transposase attL 1672796:1672817|attR 1723016:1723037
DBSCAN-SWA_8 1783942 : 1825466 31 Wolbachia_phage(33.33%) transposase NA
DBSCAN-SWA_9 2108188 : 2156872 49 uncultured_virus(27.27%) tRNA,transposase NA
DBSCAN-SWA_10 2671348 : 2737373 52 Bacillus_phage(27.27%) protease,tRNA,transposase NA
DBSCAN-SWA_11 2778146 : 2813153 36 Virus_Rctr41k(33.33%) integrase,transposase attL 2802053:2802072|attR 2816017:2816036
DBSCAN-SWA_12 2823060 : 2934410 110 Ostreococcus_tauri_virus(17.65%) integrase,protease,transposase attL 2881099:2881113|attR 2889913:2889927
DBSCAN-SWA_13 3051016 : 3097729 42 Ralstonia_phage(20.0%) transposase NA
DBSCAN-SWA_14 3116955 : 3184891 59 Bacillus_virus(12.5%) protease,tRNA,transposase NA
DBSCAN-SWA_15 3271465 : 3325681 45 Tupanvirus(27.27%) tRNA,transposase NA
DBSCAN-SWA_16 3329513 : 3359022 31 Streptococcus_phage(33.33%) integrase,tRNA,transposase attL 3333312:3333327|attR 3348680:3348695
DBSCAN-SWA_17 3677845 : 3779997 90 Lactococcus_phage(10.0%) bacteriocin,integrase,transposase attL 3699932:3699959|attR 3778679:3778706
DBSCAN-SWA_18 3791874 : 3840605 46 Shigella_phage(33.33%) integrase,tRNA,transposase attL 3797447:3797506|attR 3824212:3824316
DBSCAN-SWA_19 3899042 : 3947399 52 Streptococcus_phage(33.33%) integrase,tRNA,transposase attL 3902425:3902484|attR 3948487:3949633
DBSCAN-SWA_20 3952161 : 4006199 44 Catovirus(25.0%) integrase,transposase attL 3942569:3942593|attR 4006366:4006390
DBSCAN-SWA_21 4032708 : 4229910 167 Streptococcus_phage(14.29%) integrase,protease,tRNA,transposase attL 4140460:4140519|attR 4170602:4171053
DBSCAN-SWA_22 4258555 : 4384721 111 Burkholderia_virus(27.27%) integrase,transposase attL 4314554:4314571|attR 4390247:4390264
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage