CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT962480	Pseudomonas syringae pv. syringae isolate CFBP4215 chromosome 1	4 crisprs	DEDDh,RT,csa3,cas3,DinG	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT962480_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT962480_1

643597-643690

Orphan

Consensus_repeat	Method
TGGTGATCTTGCGGGCACCTATCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LT962480_1

>merge|NZ_LT962480|1|643597-643690|CRISPRCasFinder
TGGTGATCTTGCGGGCACCTATCGCTCCTCACGCCCCGGTGCGGCATGCCCGCGCTGGGGCCGGGCCAGGTGGTGATCTTGCGGACACCTATCG

>NZ_LT962480|1|1|643597-643690|CRISPRCasFinder
TGGTGATCTTGCGGGCACCTATCG	CTCCTCACGCCCCGGTGCGGCATGCCCGCGCTGGGGCCGGGCCAGG
TGGTGATCTTGCGGACACCTATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT962480.1\|WP_011266486.1\|640310_642566_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_LT962480.1\|WP_024641179.1\|634855_635227_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_003366295.1\|654419_655451_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NZ_LT962480.1\|WP_024660841.1\|646801_648586_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_003431952.1\|636903_638808_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_LT962480.1\|WP_024641182.1\|642749_643445_+\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|377153
NZ_LT962480.1\|WP_024652407.1\|633808_634261_+\|DUF1249-domain-containing-protein	unknown	unknown	gnl\|CDD\|225693
NZ_LT962480.1\|WP_003402869.1\|635314_636121_+\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NZ_LT962480.1\|WP_016567051.1\|634457_634865_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_003402902.1\|653308_654358_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
NZ_LT962480.1\|WP_032702578.1\|652453_653305_+\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NZ_LT962480.1\|WP_096104355.1\|636209_636827_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225692
NZ_LT962480.1\|WP_003402899.1\|650710_652246_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_LT962480.1\|WP_003402884.1\|645521_646736_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_LT962480.1\|WP_003402903.1\|655559_656096_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_LT962480.1\|WP_080433788.1\|648841_650665_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|104071
NZ_LT962480.1\|WP_003393544.1\|656192_656804_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_LT962480.1\|WP_161632433.1\|639820_640300_+\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|131334
NZ_LT962480.1\|WP_060405953.1\|638804_639782_+\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_LT962480.1\|WP_003402883.1\|643849_645391_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226249

Protein	Function_ID	Function_description	E-value
NZ_LT962480.1\|WP_011266486.1\|640310_642566_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_LT962480.1\|WP_003431952.1\|636903_638808_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_LT962480.1\|WP_024641182.1\|642749_643445_+\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|377153	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component. ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.	9.71642e-34
NZ_LT962480.1\|WP_024652407.1\|633808_634261_+\|DUF1249-domain-containing-protein	gnl\|CDD\|225693	COG3151, COG3151, Uncharacterized protein conserved in bacteria [Function unknown].	7.7479e-56
NZ_LT962480.1\|WP_003402869.1\|635314_636121_+\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	8.94366e-97
NZ_LT962480.1\|WP_003366295.1\|654419_655451_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NZ_LT962480.1\|WP_003402902.1\|653308_654358_+\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	3.56412e-175
NZ_LT962480.1\|WP_032702578.1\|652453_653305_+\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	4.89332e-157
NZ_LT962480.1\|WP_096104355.1\|636209_636827_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	7.18069e-72
NZ_LT962480.1\|WP_003402899.1\|650710_652246_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	3.24715e-08
NZ_LT962480.1\|WP_003402884.1\|645521_646736_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.81103e-103
NZ_LT962480.1\|WP_003402903.1\|655559_656096_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	2.47667e-133
NZ_LT962480.1\|WP_080433788.1\|648841_650665_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|104071	PRK09629, PRK09629, bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional.	0
NZ_LT962480.1\|WP_003393544.1\|656192_656804_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	2.42618e-82
NZ_LT962480.1\|WP_161632433.1\|639820_640300_+\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|131334	TIGR02281, Uncharacterized_protein_RP867, clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria). [Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.41127e-49
NZ_LT962480.1\|WP_060405953.1\|638804_639782_+\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	7.69114e-09
NZ_LT962480.1\|WP_003402883.1\|643849_645391_-\|HAMP-domain-containing-protein	gnl\|CDD\|226249	COG3726, AhpA, Uncharacterized membrane protein affecting hemolysin expression [General function prediction only].	3.92741e-45

>NZ_LT962480.1|WP_024641182.1|642749_643445_+|membrane-integrity-associated-transporter-subunit-PqiC
MNFLRLPLILLMTGVLGLAGCSVRQPTALYQLDSGEPGQPKQSSGLAVLLGPVSVADYLQRETLLQRQPDGTLTASSDGRWAGNLSSDIDQLLLRQLAWKLDSQRVVMAPATASFTPDVQVVLSITRLDSGAKQPAVLDAQWRLLDRKGHVRDSRLVHLEQVHAGSSADQVKAQGMLLQRLADQVSTAIKPISWQALDEPKKTPVAKAKEPDKPRIPLASPIRTDLEVFRF
>NZ_LT962480.1|WP_011266486.1|640310_642566_+|DNA-topoisomerase-IV-subunit-A
MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMRAVYRIEDGDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALLVENS
>NZ_LT962480.1|WP_161632433.1|639820_640300_+|TIGR02281-family-clan-AA-aspartic-protease
MIMAWAAGLFLATRFFGDWEDRQQNPNAVVTSQHGDGYIEVQLAGNRQGHFVTTGQINGRTVEFMIDTGATDVAVPGDMADRLGLKRGFPVTVSTANGNSQGFRTTLDRLQLGDIVLTNVRALVAPGLDGEQVLLGMSAMKQLEFTQRGGNLLLRQSTK
>NZ_LT962480.1|WP_060405953.1|638804_639782_+|esterase-like-activity-of-phytase-family-protein
MIRAWLAALILIAAPVVAAPLEALKLQSEHPVDDMAGGNLSGLAMCNGQLWTVSDRDDDVLYSLDVSQDTWKAQSHHIDAPAPQSYLPLKLRFMAGLSALIRGGSLDFEGVSCDAAGNRYLVSEAYGTVLKVPVSGKPFWLDLPKELVDQARSQGMLQRFNAIFEGIAVSPAGDRLWLAAEREKRGLLVVQRDKEQWTCGQSCVLLSESGLDALPPEQGSKKVSTDFSDVSLYNGKLFTLERAVYRICRRDLETGQVERCWSFAKEAMVPSRRYDQPYGLTEALVVDEKGAWIGIDNNFGVRADGEKRPIVWRFAAPEAGWSAGQ
>NZ_LT962480.1|WP_003431952.1|636903_638808_+|DNA-topoisomerase-IV-subunit-B
MANPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGAADISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVLT
>NZ_LT962480.1|WP_096104355.1|636209_636827_+|alpha/beta-fold-hydrolase
MTSDTPSLLYIHGLNSSNLSRKACQLSALMKSLGLADRLQVPELHHHPRQAMLQLEAAIAALGRPLLVGSSLGGYYATHLAQRHGLKAVLINPAVNPHQLFDGFLGVQQNLYTGEQWQLTEDHIRALAELEVPAPQDPQQFQVWLQTGDETLDYRRAEKFYRSCALRIQAGGDHSFQGFAEHMPALLTVAGFAPDLLQKIDLSAL
>NZ_LT962480.1|WP_003402869.1|635314_636121_+|3',5'-cyclic-AMP-phosphodiesterase
MPSAALSSSVLLVQLSDSHLFAEADGALLGMSTRDSLEKVVDRVLAEQPHIDLVVASGDISQDGSVESYQAFRRISGRIDAPARWFAGNHDELPQMEQVAQHNGLLDPVVDIGQWRVTLLDSAVPGSVPGFLADTQLQLLEQSLSEAPDRHHLICLHHHPVAIGCEWMAPIGLRNADALFAVLDRFAQVRAILWGHVHQEFDQMRNGVRLLASPSTCIQFAPGSVDFKVDTTAPGYRWLRLHDDGRLETAVSRVVGLEFEVDYGGTGY
>NZ_LT962480.1|WP_024641179.1|634855_635227_+|hypothetical-protein
MAMIIYRALIGGFTGLIFGLLLYVGLIILTGSTLRGEHSLYMAIIGAVIGILSLRLMPWIVHLAGLAGMILGVALELLLAGYLWPGMPYERVLSYLLGAGLAGMVSAGLIASIVLKHRANQQM
>NZ_LT962480.1|WP_016567051.1|634457_634865_+|hypothetical-protein
MSYLGSHLNHCRAVPFNWYDTWLVVVSGDGPNICGHALLKAGEFYFHIAGLAERPYFMSETDYRRYLNESSKTELFRRRILLTEPDAAQRKLEELSAKPWHWFGIPNNCVSYVEEIFSAGGSRESMITNCPVRWR
>NZ_LT962480.1|WP_024652407.1|633808_634261_+|DUF1249-domain-containing-protein
MVVNLLRERYRVDLAGLQAACEANYARLMRLLPDMRNEQRSRRVAVTQGDQMLGVLAVEVLLDCPYTTTLQVRQEHSLPWLPVPKLEVQVYHDARMAEVIGAEHARRFRGIYPYPNADMHQPDEKAQLNLFLGEWLSHCLACGHEFEAVR
>NZ_LT962480.1|WP_003402883.1|643849_645391_-|HAMP-domain-containing-protein
MNRPTPVKTDNFFLLIFRALRHRRVPIALRIASHNVILVALALVIYAGVMGLQFKQAMHEQADALGQALTTQTATSATELLVSNDILSLNVLLGNLVKNPLVAHAAIYSVDNRILAEAGQRPKNGLLGEAQGLYEIKITFQDVMAGHLRISLDMSQFQQPLTISLQSMGILAGILLALALALSLRLGRHISTPLMQMRIWLRDIDPYTPATDRQDEIGDLARQLRTSFAPPVPEPEPLPEPEYDGEEDDSEDPYLEPEEKPAPVVSARSSEAKPRLPAPPVQRRIVAEEDEDDDEDPFADLRDHSDNSPAVRPAAASVAPVEPHNSAVLAVQLGAQDQLRRLPRARLTELLQRYRDCLDQAASLYESELHTLNDGSTLMLFHSHESGDDYLTNAICCGELLRALSHALQIEVADSGITLQLQLGLTLGEGLSGLSQIDLLLTETAQDALALSQHSRNLLLVERRINDDPLIRQRARIRPIASPEGACCVERLMEPYPSMLERQLARMHESNKA
>NZ_LT962480.1|WP_003402884.1|645521_646736_+|phosphoserine-phosphatase-SerB
MREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDTVQGSSVLKDILFTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRKVTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGKGCIEFTVRGEPADPKAMQAEFLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITERAMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGGFTYFAKQLQAKLGIDYVFANELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQTIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTLGLDGVLYLLGLRDREGKR
>NZ_LT962480.1|WP_024660841.1|646801_648586_-|hypothetical-protein
MSNFSLPLLLRAPTPTQSSLTFSEANPRDLKRWISRLPKANLGEMARQLYQGLTELNQLITPSENRLQLLELLRPEVYFVCKHLERHFLNQAIVLDERPRKVANLCQALQNHLATGYKQIIQQVAPRYTRDQAGLFSTALQRAVHGLNGPLIRANQLYCPVQDGLWLELHQIYQIARQYQLHNTPVEEPLAHHSKVLSVEQTYVIALLMGCSRCNQMRQLNIGKLADALEAWSALVKLQSPATQSSLFALDPTADKPPLYRTLFSDEQSPRLLGINTLALAEAINQYLALPDDQRTPSPLLIPTGINTDLLQHLAVAWGDVAERTFQRTPGQGTLRLCIGMSALHFYVAGQKSFSELLQLNSATSAASFSLKMANDDADDPWASAFDTQRGKTSSVLLPYEEIEYPKNDGDSDSLSNNQHTFPTFDLNIVNHSPGGYCLAWQKDVPQQLQAGELVGIQDDAGQGWSVAIVRWIRQVRSGGTQMGIELIAPFAQPCGMQLIREQQNSQYLRTLMLPEVRAMEKPPTVLAPRLPFQEGSMVMINVNGEERRASLSNRQVSSASYNQFEYQMYDAPKAAEIEKGRPDQEFDSLWGTL
>NZ_LT962480.1|WP_080433788.1|648841_650665_-|phosphatidylserine-decarboxylase
MSAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAPGLLPDTAGLEQVFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAWEAQLLPMSTDVPPAADTPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVELPDVAAAPVEVAQPVEPAQPAPAETVEPVRATEPGRTSQKYSGHSSSGPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAFTAWFARRYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDATPGAILSPADGAISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMVYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLVTPPKRELKTFSYDEAARAPIHLEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQMGQALAVPAQA
>NZ_LT962480.1|WP_003402899.1|650710_652246_-|HDOD-domain-containing-protein
MPTVHAAHHLVPKTLDAWVKLLDGIALPVPAVNHGHVRAALNDSRRSLREIAEMMQESPALVLSVMREANHHTHGLTEQAESLEIAINRLGLARTEVLLGRLPAKPPEEIPAAYRQLILVSQHATQQANGLFASRLARLWQDIHMGSLLFLSPLWPMALAYPKLLEELELRVIHKGHSSAAVEKELFGVNLLELCLALAEFWRLPIWVTRGYKLLINERRDLAKALRIAREDNSPLQQQQLMDDDPNLRRWLNQPANTVLLGNGLALAAQNAWNSPHCLRWERLTSLYLQQSISEVQQQAHQNAASSARVHAEKDLWHPAESLIWPWDARRVRRDNEPAPPPSADALQMWRKQCAELLQDPSPFINAMHLTTSARDAFISCGMERVMLLMLDKTSTVLRVNQTAGLPKDAAALQLFIKESTVLQRLLTQPTQLRMTPANSAQFAALLPPPLKTLFSGQHWLIRSLSNNGKVMLLVVADQGGGALSEISVQAFGKTAQCIERALGIFSHRKA
>NZ_LT962480.1|WP_032702578.1|652453_653305_+|flagellar-motor-stator-protein-MotA
MAKIIGIIVVLASVIGGYVLSHGKVMALFQPYEVLIIGGAALGAFLQANPGYMFMHVFKKSLKMFGTRFTHAYYLEVLGLVYEILNKSRREGMMAIEGDIEDAASSPIFAKYPGVLKDERMTAYICDYLRIMSSGNMAPHELEGLFDMELLSMKEDLEHPSHAITGIADGMPGFGIVAAVLGIVVTMASLGSGDKAAIGMHVGAALVGTFFGILAAYGFFGPLATSLAHDAKEEMNVYEAIKASLVASASGMPPSLAVEFGRKVLYPLHRPSFSELEQAVRGR
>NZ_LT962480.1|WP_003402902.1|653308_654358_+|flagellar-motor-protein-MotB
MENNQPIIIKRVKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPLEAENAETKAEAVEQERLEMLLQELQTKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRQNPTNPINRRIDIVVLTKKAQHRIEGDQNSGGAPATPAAPTAPAPAVPAAPGAPAAPGASTAAPPDPQAYAQPHEIRQKLNIFDDGKLRVEPAQN
>NZ_LT962480.1|WP_003366295.1|654419_655451_-|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKRQLNRRQNWRIEKIQGERAARAAKRESATLETLEGGDLGPEQTGLVIAHFGVQVEVEAQEGEVTGQVFRCHLRANLPALVTGDRVVWRAGNQGIGVIVAQLPRTTELRRPDSRGQLKPVAANVDLIVIVFAPMPEPHANLIDRYLVAAEHAGIRPLLLLNKADLIDEQNAPALNALLAVYRTLGYPVLEVSAHHGDGMQSLQSQLDGHISVFVGQSGVGKSSLVNSLLPETDTRVGPLSEVSGQGTHTTTTARLFHFPRGGDLIDSPGIREFGLGHVSRADVEAGFIEFNDLIGTCRFRDCKHDREPGCALLKGLEDGRVQQQRMNSYRSIIASLPQDSY
>NZ_LT962480.1|WP_003402903.1|655559_656096_+|oligoribonuclease
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDDIRESIAELRFYREHFIKP
>NZ_LT962480.1|WP_003393544.1|656192_656804_+|trimeric-intracellular-cation-channel-family-protein
MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKHPEYLVLTSVAALVTIFIAPLMRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVCGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFLLCQYLQLPDEQAVLITLFGGLLLRLLAIRFRWEMPKFVYKDEP

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Crispr_ID: NZ_LT962480_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT962480_2

1693560-1693696

Orphan

Consensus_repeat	Method
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT962480_2

>merge|NZ_LT962480|2|1693560-1693696|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGCGTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACGCCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

>NZ_LT962480|2|2|1693560-1693696|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	GTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACG
CCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT962480.1\|WP_003368346.1\|1680681_1681335_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_LT962480.1\|WP_011267131.1\|1699879_1700677_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_LT962480.1\|WP_011267129.1\|1696611_1697544_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
NZ_LT962480.1\|WP_024661200.1\|1684068_1684875_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224441
NZ_LT962480.1\|WP_011267127.1\|1691834_1693124_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_LT962480.1\|WP_003317453.1\|1694452_1694707_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|234718
NZ_LT962480.1\|WP_024642759.1\|1693726_1694362_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_LT962480.1\|WP_004408362.1\|1697576_1698761_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848
NZ_LT962480.1\|WP_004408355.1\|1700666_1701185_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_004408565.1\|1682445_1683243_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_LT962480.1\|WP_024643193.1\|1679699_1680662_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_LT962480.1\|WP_003421288.1\|1683229_1684072_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226616
NZ_LT962480.1\|WP_004408569.1\|1684953_1686021_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270267
NZ_LT962480.1\|WP_003317454.1\|1694706_1695519_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_LT962480.1\|WP_024639961.1\|1686375_1687095_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|132380
NZ_LT962480.1\|WP_004408361.1\|1698802_1699039_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239550
NZ_LT962480.1\|WP_011267122.1\|1681454_1682444_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_LT962480.1\|WP_003368369.1\|1695750_1696491_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
NZ_LT962480.1\|WP_104683861.1\|1687554_1691583_+\|Ice-nucleation-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_011267130.1\|1699022_1699880_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634

Protein	Function_ID	Function_description	E-value
NZ_LT962480.1\|WP_003368346.1\|1680681_1681335_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.6194e-57
NZ_LT962480.1\|WP_011267131.1\|1699879_1700677_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.52189e-37
NZ_LT962480.1\|WP_011267129.1\|1696611_1697544_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_LT962480.1\|WP_024661200.1\|1684068_1684875_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	3.67462e-39
NZ_LT962480.1\|WP_011267127.1\|1691834_1693124_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_LT962480.1\|WP_003317453.1\|1694452_1694707_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46
NZ_LT962480.1\|WP_024642759.1\|1693726_1694362_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.3798e-77
NZ_LT962480.1\|WP_004408362.1\|1697576_1698761_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.50264e-39
NZ_LT962480.1\|WP_024643193.1\|1679699_1680662_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	8.68834e-151
NZ_LT962480.1\|WP_003421288.1\|1683229_1684072_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.03847e-111
NZ_LT962480.1\|WP_004408569.1\|1684953_1686021_-\|extracellular-solute-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.29243e-58
NZ_LT962480.1\|WP_003317454.1\|1694706_1695519_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
NZ_LT962480.1\|WP_024639961.1\|1686375_1687095_+\|UTRA-domain-containing-protein	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	2.74565e-82
NZ_LT962480.1\|WP_004408361.1\|1698802_1699039_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.48988e-09
NZ_LT962480.1\|WP_011267122.1\|1681454_1682444_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	8.21531e-147
NZ_LT962480.1\|WP_003368369.1\|1695750_1696491_-\|septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	8.00188e-159
NZ_LT962480.1\|WP_004408565.1\|1682445_1683243_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.2364e-59
NZ_LT962480.1\|WP_011267130.1\|1699022_1699880_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20

>NZ_LT962480.1|WP_011267127.1|1691834_1693124_-|M18-family-aminopeptidase
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLSGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>NZ_LT962480.1|WP_104683861.1|1687554_1691583_+|Ice-nucleation-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>NZ_LT962480.1|WP_024639961.1|1686375_1687095_+|UTRA-domain-containing-protein
MREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIHVRAEVHGD
>NZ_LT962480.1|WP_004408569.1|1684953_1686021_-|extracellular-solute-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSEIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRVEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>NZ_LT962480.1|WP_024661200.1|1684068_1684875_-|alkaline-phosphatase-family-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHAAGRAALYKIECELPALSRPLYECILTGVAPIDSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGIPHDKPVCREIFN
>NZ_LT962480.1|WP_003421288.1|1683229_1684072_-|ABC-transporter-permease-subunit
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWENFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDSRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>NZ_LT962480.1|WP_004408565.1|1682445_1683243_-|ABC-transporter-permease
MSRVERGPASIYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>NZ_LT962480.1|WP_011267122.1|1681454_1682444_-|ABC-transporter-ATP-binding-protein
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILLDGSDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVAEILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVKLVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>NZ_LT962480.1|WP_003368346.1|1680681_1681335_-|HAD-IB-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSEGKLAMEDYMAFSLEPMAGRTPEEIDHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHAQKAGWPVHDWS
>NZ_LT962480.1|WP_024643193.1|1679699_1680662_+|NAD(P)H-quinone-oxidoreductase
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSSWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVIDESLV
>NZ_LT962480.1|WP_024642759.1|1693726_1694362_-|RluA-family-pseudouridine-synthase
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERLTFECAAPF
>NZ_LT962480.1|WP_003317453.1|1694452_1694707_-|cell-division-topological-specificity-factor-MinE
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>NZ_LT962480.1|WP_003317454.1|1694706_1695519_-|septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>NZ_LT962480.1|WP_003368369.1|1695750_1696491_-|septum-site-determining-protein-MinC
MSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>NZ_LT962480.1|WP_011267129.1|1696611_1697544_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQEKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQRRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>NZ_LT962480.1|WP_004408362.1|1697576_1698761_+|patatin-like-phospholipase-family-protein
MPDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLRLT
>NZ_LT962480.1|WP_004408361.1|1698802_1699039_-|Rieske-2Fe-2S-domain-containing-protein
MNEPAEFRRPDTFTVHIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>NZ_LT962480.1|WP_011267130.1|1699022_1699880_-|iron-containing-redox-enzyme-family-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>NZ_LT962480.1|WP_011267131.1|1699879_1700677_-|dihydrodipicolinate-synthase-family-protein
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDWYAHIKRELRARGVINSERVVTEEAA
>NZ_LT962480.1|WP_004408355.1|1700666_1701185_-|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFESTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVW

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Crispr_ID: NZ_LT962480_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT962480_3

4461831-4461932

Unclear

Consensus_repeat	Method
GCTCCGCATGGGTATGCCGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_LT962480_3

>merge|NZ_LT962480|3|4461831-4461932|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCTGGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCATGCTCCGCGTGGGTATGCCGTTCT

>NZ_LT962480|3|3|4461831-4461932|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCT	GGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCAT
GCTCCGCGTGGGTATGCCGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT962480.1\|WP_011268643.1\|4454205_4455171_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_LT962480.1\|WP_003363371.1\|4455798_4456179_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_003402477.1\|4462417_4463755_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_LT962480.1\|WP_003425465.1\|4460458_4461322_+\|lipoprotein	unknown	unknown	unknown
NZ_LT962480.1\|WP_024650586.1\|4473208_4474102_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NZ_LT962480.1\|WP_104684469.1\|4466058_4468431_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_LT962480.1\|WP_003412760.1\|4459003_4459516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_024659747.1\|4471839_4473102_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_LT962480.1\|WP_104684471.1\|4469971_4470754_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_LT962480.1\|WP_104684470.1\|4468983_4469883_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
NZ_LT962480.1\|WP_003402465.1\|4468550_4468964_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_002554403.1\|4458647_4458836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT962480.1\|WP_011268644.1\|4456256_4456658_-\|DUF2177-family-protein	unknown	unknown	gnl\|CDD\|378319
NZ_LT962480.1\|WP_011268648.1\|4459660_4460389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NZ_LT962480.1\|WP_024638939.1\|4463905_4465141_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NZ_LT962480.1\|WP_011268645.1\|4456802_4457435_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239322
NZ_LT962480.1\|WP_104684472.1\|4470814_4471843_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_LT962480.1\|WP_011268646.1\|4457504_4458341_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_LT962480.1\|WP_024638938.1\|4465152_4465842_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT962480.1\|WP_003402493.1\|4455394_4455586_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241

Protein	Function_ID	Function_description	E-value
NZ_LT962480.1\|WP_011268643.1\|4454205_4455171_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.83791e-66
NZ_LT962480.1\|WP_104684469.1\|4466058_4468431_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_LT962480.1\|WP_003402477.1\|4462417_4463755_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
NZ_LT962480.1\|WP_104684470.1\|4468983_4469883_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.40123e-96
NZ_LT962480.1\|WP_024659747.1\|4471839_4473102_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.58435e-103
NZ_LT962480.1\|WP_104684471.1\|4469971_4470754_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	2.22825e-64
NZ_LT962480.1\|WP_024650586.1\|4473208_4474102_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.88223e-113
NZ_LT962480.1\|WP_011268644.1\|4456256_4456658_-\|DUF2177-family-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	4.24722e-43
NZ_LT962480.1\|WP_011268648.1\|4459660_4460389_+\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
NZ_LT962480.1\|WP_024638939.1\|4463905_4465141_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	6.24629e-51
NZ_LT962480.1\|WP_011268645.1\|4456802_4457435_+\|DsbA-family-protein	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	7.203e-44
NZ_LT962480.1\|WP_104684472.1\|4470814_4471843_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	9.7246e-45
NZ_LT962480.1\|WP_011268646.1\|4457504_4458341_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.89195e-109
NZ_LT962480.1\|WP_024638938.1\|4465152_4465842_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.70776e-76
NZ_LT962480.1\|WP_003402493.1\|4455394_4455586_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09

>NZ_LT962480.1|WP_003425465.1|4460458_4461322_+|lipoprotein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>NZ_LT962480.1|WP_011268648.1|4459660_4460389_+|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>NZ_LT962480.1|WP_003412760.1|4459003_4459516_+|hypothetical-protein
MKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>NZ_LT962480.1|WP_002554403.1|4458647_4458836_+|hypothetical-protein
MAAMRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>NZ_LT962480.1|WP_011268646.1|4457504_4458341_-|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIELV
>NZ_LT962480.1|WP_011268645.1|4456802_4457435_+|DsbA-family-protein
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMADRRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATTTGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>NZ_LT962480.1|WP_011268644.1|4456256_4456658_-|DUF2177-family-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLDTPVLGPAIAFYLLYGAGVVFFGVMPALRVQRLSHATLCSGLLGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>NZ_LT962480.1|WP_003363371.1|4455798_4456179_+|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>NZ_LT962480.1|WP_003402493.1|4455394_4455586_-|CsbD-family-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>NZ_LT962480.1|WP_011268643.1|4454205_4455171_-|YihY/virulence-factor-BrkB-family-protein
MIFPHLRKLKVGKVLVRTVNEFLDDEMSTYASALAYQMLFSLFPFLLFLIALIGFLHLPDFFSWLRLQSEFLLPPQALEQVNPVIDQLQQSKGGLLSIGIVIALWTASAGVRLMMSAMNAAYDVVEGRPIWKRLPLSILYTVGIAGMLLAAAAFMVLGPQVMNWIAAQIGMEDFIVTLWTILRWPAIIILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIVASLAFGFYVKTFADYNAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSAEGKDAGEKEAGDGGEESSETVKQHVSGLGRDHSVPLQKADEA
>NZ_LT962480.1|WP_003402477.1|4462417_4463755_-|DEAD/DEAH-box-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>NZ_LT962480.1|WP_024638939.1|4463905_4465141_-|HAMP-domain-containing-protein
MFWKLFLAFWLATSLTFMVGAGLFMFTQSGRGDPSFSTVLDNEVRILQRSGIAAGRALLDTWQPEGQGRVGLYDNQGLLLAGEALENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPSQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCRVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGSDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>NZ_LT962480.1|WP_024638938.1|4465152_4465842_-|response-regulator-transcription-factor
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGATLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLITP
>NZ_LT962480.1|WP_104684469.1|4466058_4468431_+|outer-membrane-protein-assembly-factor-BamA
MISSRLLLSFCLLISVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTEDLVKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSSNLITRRLGNDGYTFANVNGVPKANVADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGTYASQGQIYYSDRDTEALGGNILISGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>NZ_LT962480.1|WP_003402465.1|4468550_4468964_+|hypothetical-protein
MSREVRQITPDVQEIIQHALRSLLGKGFVIALFGSEDATGAMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVVQTAEAAGRECLSALRERRLRA
>NZ_LT962480.1|WP_104684470.1|4468983_4469883_-|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATIALIWPSLGRLRNSAPGTRLAMLNKHPISLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTSSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>NZ_LT962480.1|WP_104684471.1|4469971_4470754_+|NAD(P)H-dependent-oxidoreductase
MNVLIVYAHPEPRSLNGSLKDFAVDHLQNNGHQVQVSDLYQMGWKPIIDANDAPGLESSSRFDPALESQRVFAAGIQPPDIEAEQARLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDQHWGDRYGEGTLAGKRAMLTVTMGGWESHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSATFARICADYGNRLDTLFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLGIHLRDQ
>NZ_LT962480.1|WP_104684472.1|4470814_4471843_-|alpha/beta-hydrolase
MKKILLMLGLLISSYAATGADMSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPKGSNPNVKAPAIIVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKKRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVDKLTDTSGPIEREFYDFYRTPRGEFTPEGQSPELTTHPTLTSNIKFMNFYPFNDIATISPRPMLFIAGSKAHSLEFSEEAYKLAGQPKQLIIVPEAGHVDLYDRVDLIPFDKLGEFFKNNLK
>NZ_LT962480.1|WP_024659747.1|4471839_4473102_-|MFS-transporter
MQAFDSTLKQSEITTHPPAWGAVFSMALCVVVLIASEFMPVSLLTPIAQDLGISQGQAGQAISISGFFAVLTSLLNTPLTGHLDRKPVLLGFSLLLLVSGVIVTLASNGWLFMTGRALLGIAIGGFWSMSTATVMKLVPKQSVAKGLALINGGNALAATVAAPLGSFMGQYIGWRGAFFLVIPLAALAFAWQWLSLPAMRSQPHNRARNPFRLLRNPQVAVGMSAILLLFMGQFAVFTYLRPFLEEITGVSVNTLSLMLLALGASGLVGTYLIGRLLHKGLYACLIVIPLLMAVLAVALTGLGHSPQAVAIVLAVWGLIATPAPVAWGLWLSRTLPDDAEAGGGLMVATIQLAITAGAGIGGALFDSLGWWSPFAFGGVLLACSAALAWTARDNALLQEKNTGQGRADKRGSISQRGNTP
>NZ_LT962480.1|WP_024650586.1|4473208_4474102_+|LysR-family-transcriptional-regulator
MSTPKLNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGERLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQVEICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQDLTQHTCINIRHSPNGSCYAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYVPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVEAVRYRG

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Crispr_ID: NZ_LT962480_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT962480_4

5728185-5728260

Orphan

Consensus_repeat	Method
TCGTTCCTCACGCTCCAGCGTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT962480_4

>merge|NZ_LT962480|4|5728185-5728260|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGAGCGATAATCATATGGCCGCACGATTATCGTTCCGCACGCTCCAGCGTGGGA

>NZ_LT962480|4|4|5728185-5728260|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGA	GCGATAATCATATGGCCGCACGATTA
TCGTTCCGCACGCTCCAGCGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT962480.1\|WP_104684643.1\|5719632_5720775_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_LT962480.1\|WP_002555770.1\|5734468_5734684_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NZ_LT962480.1\|WP_004407339.1\|5735519_5736317_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
NZ_LT962480.1\|WP_104684642.1\|5714269_5716657_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_LT962480.1\|WP_080278018.1\|5729234_5730314_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_LT962480.1\|WP_003372160.1\|5718715_5719636_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_LT962480.1\|WP_004407337.1\|5736345_5737311_-\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
NZ_LT962480.1\|WP_003318285.1\|5737693_5738332_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314
NZ_LT962480.1\|WP_060400258.1\|5722096_5723194_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LT962480.1\|WP_024640640.1\|5723337_5724702_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_LT962480.1\|WP_162886835.1\|5732133_5733311_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_LT962480.1\|WP_003413528.1\|5726723_5728100_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_LT962480.1\|WP_011269280.1\|5738501_5739848_-\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
NZ_LT962480.1\|WP_002555767.1\|5724770_5726129_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_LT962480.1\|WP_060400257.1\|5730542_5731628_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_LT962480.1\|WP_104684644.1\|5720830_5721925_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LT962480.1\|WP_003427335.1\|5734710_5735523_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NZ_LT962480.1\|WP_004407356.1\|5717837_5718719_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_LT962480.1\|WP_024642508.1\|5728558_5729203_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LT962480.1\|WP_024642007.1\|5713059_5714001_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176

Protein	Function_ID	Function_description	E-value
NZ_LT962480.1\|WP_104684643.1\|5719632_5720775_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_LT962480.1\|WP_002555770.1\|5734468_5734684_-\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	1.14695e-16
NZ_LT962480.1\|WP_004407339.1\|5735519_5736317_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	1.60766e-137
NZ_LT962480.1\|WP_104684642.1\|5714269_5716657_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	0
NZ_LT962480.1\|WP_080278018.1\|5729234_5730314_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.19612e-30
NZ_LT962480.1\|WP_003372160.1\|5718715_5719636_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152
NZ_LT962480.1\|WP_004407337.1\|5736345_5737311_-\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.78911e-144
NZ_LT962480.1\|WP_003318285.1\|5737693_5738332_-\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	6.31398e-131
NZ_LT962480.1\|WP_060400258.1\|5722096_5723194_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_LT962480.1\|WP_024640640.1\|5723337_5724702_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_LT962480.1\|WP_162886835.1\|5732133_5733311_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.37375e-71
NZ_LT962480.1\|WP_003413528.1\|5726723_5728100_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
NZ_LT962480.1\|WP_011269280.1\|5738501_5739848_-\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	9.41389e-140
NZ_LT962480.1\|WP_002555767.1\|5724770_5726129_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
NZ_LT962480.1\|WP_060400257.1\|5730542_5731628_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	6.84115e-30
NZ_LT962480.1\|WP_104684644.1\|5720830_5721925_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_LT962480.1\|WP_003427335.1\|5734710_5735523_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	8.46185e-172
NZ_LT962480.1\|WP_004407356.1\|5717837_5718719_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.58132e-118
NZ_LT962480.1\|WP_024642508.1\|5728558_5729203_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.6796e-09
NZ_LT962480.1\|WP_024642007.1\|5713059_5714001_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.3758e-34

>NZ_LT962480.1|WP_003413528.1|5726723_5728100_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_LT962480.1|WP_002555767.1|5724770_5726129_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>NZ_LT962480.1|WP_024640640.1|5723337_5724702_-|aspartate-aminotransferase-family-protein
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVESVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLKPDMMTIAKGLTSGYVPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAQIDELVEKARKCLDLTLAVLQG
>NZ_LT962480.1|WP_060400258.1|5722096_5723194_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLLAGKSGYDVVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGE
>NZ_LT962480.1|WP_104684644.1|5720830_5721925_-|polyamine-ABC-transporter-substrate-binding-protein
MSISILSKALLAAAGLTLTLGAQAKSTVHIYNWSDYIGKTTLTDFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKKAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKEASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPPKVQRLMTRSWTKVKSGK
>NZ_LT962480.1|WP_104684643.1|5719632_5720775_-|polyamine-ABC-transporter-ATP-binding-protein
MAVASGAYKKALEGGQQPKEVLVKIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTDGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>NZ_LT962480.1|WP_003372160.1|5718715_5719636_-|ABC-transporter-permease-subunit
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>NZ_LT962480.1|WP_004407356.1|5717837_5718719_-|ABC-transporter-permease-subunit
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQMIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQAIEESAADAWKQPDPRRAPAA
>NZ_LT962480.1|WP_104684642.1|5714269_5716657_+|penicillin-acylase-family-protein
MKRSLFILAIIIALLAGGAGWYVNSKLPVRDGEIAMSRLQAPVTLRYDERGVPHIRAENEADLYRALGYAHAQDRLFQMEMLRRLARGELAEVLGPNLLETDKLFRTLRIREHADAYVARQDKNTPTWKALEAYIDGINQYQDTHARPMEFDALGIPRRRFTPEDTVSIAGYLAYSFAAAFRTEPLLTYVRDQLGPEYLKVFDLDWHPDGMLDSKPALADADWKGLNQLAQLSHKALEDAGLPQFEGSNAWVISGSRTQSGKPILAGDPHIRFSVPSVWYEAQLSAPGFELYGHFPALNPFALLGHNMDFGWSLTMFQNDDVDLIAEKTNPDNPNQVWYHGQWVDMKRTEQQIAIKGQAPVTLTLLESPHGPIVNNVMGKNAGQAPIAMWWSFLVSANPVLDGFYEANRADTLDKMRSAAEKIQSPGLNIVWANAKGDIGWWAAAQLPIRPQGVNPTFILDGSTAQADKLGFYPFSANPHEENPARGYIVSANFQPLSPTGMQIPGYYNPAERGQELNRQLSDASVKWDLAASKALQLDTQTDYAPSILRPLIPVLRSVVSDPDELALVERLASWKGDYPVDSVGATLFNQFLFDLTEETFHDELGDAMFETLLSSRVLDAALPRLAADADSPWWNNRNSPHEESRANTVKVAWRASVSHLRSLYGTNPDEWVWGKAHTLTQGHPLGSQKPLDMIFNVGPYAAPGTHEVPNNLSSSIRPAPWPVGYGPSTRRLIDFADPAHSLGINPVGQSGVPFDKHYSDQAKAFVNGEYLPQRFSEKDVAEHTEGVLRLVPGA
>NZ_LT962480.1|WP_024642007.1|5713059_5714001_-|alpha/beta-hydrolase
MSVTFDPDNLRASLLPLSVIDPLSMEGLAYQRFYGLAGLCGENVIRSWLGRLDVAGYEVVGQVWLPDSPVATLFLFHGFYDHMGLYRHVIEWALEQRFAVIACDLPGHGLSSGSRACINDFAEYQLVLQRLLLEAEGLGLPHPWHLCGQSMGGAIVTDHLLHQGADSPAQGEVILLAPLVRPRAWGWSRLSYHLLRPFVNGIARRFTENSNAPAFLPFLMADPLQPLRLPTAWVGALAQWIVRVESAPRSLRSPLIIQGEADMTVDWSHNLAILKDKFSQPQILMLGHARHHLANETPELRARYFDFLKGRLR
>NZ_LT962480.1|WP_024642508.1|5728558_5729203_+|TetR/AcrR-family-transcriptional-regulator
MTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>NZ_LT962480.1|WP_080278018.1|5729234_5730314_-|RHS-repeat-associated-core-domain-containing-protein
MASLDPIMLCTYRYDPLDRLASSSPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSPSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPAMTWEYRVKKAEEFHHPVSTAVPTDFEVAKIYLERHLKRLLDVENTILFYKSNRAVDTGNFIEAGPSQFYKAILLRDINAFKVYAAGMSRKHRKAIRKQR
>NZ_LT962480.1|WP_060400257.1|5730542_5731628_-|RHS-repeat-associated-core-domain-containing-protein
MTSPDQTVLCKYRYDPLDRLASSSPAGQADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRRVEGAIETTLLATDQQRSVLRLVDKSGVEPVAYSAYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPVGVVDPSGHMPFSILIQAADMIEKFGPQAATLIAQRALQGVSPAARVLGGKHTPAAVPSLVSKKASKLPSASASASTSTSSAKSVSSRRRTEQRRTLELKRKNLINGLSTRLPIDESSAKRRYERFEGRVRDAEYLIEHYTKNPERVKHSIINPSQSRELFGAKLVNAETNFNAYRKKYIEKFGEYVRDPPKDK
>NZ_LT962480.1|WP_162886835.1|5732133_5733311_-|IS3-family-transposase
MTKPKTDRVKYTLEFKLEAVRLVDTGLTLAAAARSLGISDQTLFNWVKAHRQGRLTGADIKSVTPEQMEISRLRAELARVKMERDILEKANGVLRKSIQLKYAFIFTHRRLWPIGVQCRVLGVSATGFHCHQARCAVNCPQRGLSDAALLVHIRAAHARSRGSYGWPRIWHGLLADGVRVGKERVQKLMQLHGICGKGKRRFKVTTDSAHDLPISENLLDRQFAVMEPDRAWVGDITYIPTDEGWLFLAVVVDLFSRQIVGWSMDERMKSSLVIDALRMAWFKRHPHKASGLLFHSDRGSQYASFDFRHVLQGYGIVSSMSRRGNCWDNACSETVFGSLKVERLHGLKFKTRRAAKDEVINWLLWYNQERLHSTLHYVSPMQYEQNWQRQQP
>NZ_LT962480.1|WP_002555770.1|5734468_5734684_-|TOBE-domain-containing-protein
MTIKAINVRNQFKGTIKEIVHGDVLSEIDVQTASGVVTSVITTRSVKELELVVGSEVIAFVKSTEVSIAKL
>NZ_LT962480.1|WP_003427335.1|5734710_5735523_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MTSLKQQPPHLLRGIPLAVRKLKKAFGAREVLKDIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDKPTQGQLLAGSAPLDDAREDTRLMFQEARLLPWKKIIDNVGLGLSGDWRAQALEALEAVGLAERANEWPAALSGGQKQRVALARALIHKPRLLLLDEPLGALDALTRIEMQQLIEKLWGQYGFTVLLVTHDVSEAVAIADRVILIEEGQIGLDLLVDLPRPRVRGSHRLAALEAEVLNRVLALPGSPPDPEPFSPLPTQLRWAN
>NZ_LT962480.1|WP_004407339.1|5735519_5736317_-|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MSLSASQRIVHRLAPWALPVLLLAVWQLSVSAGWLSTRILPAPSAVIEAGINLVASGEIWTHLAISGWRAGIGFAIGGGIGLALGFITGLSKWGERLLDSSVQMIRNVPHLALIPLVILWFGIDETAKIFLVALGTLFPIYLNTYHGIRNIDPALVEMSRSYGLSGFSLFRHVILPGAMPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAIVLYAVLGKLADLAARGLERVCLRWHPAYQTSKGGAA
>NZ_LT962480.1|WP_004407337.1|5736345_5737311_-|sulfonate-ABC-transporter-substrate-binding-protein
MRTVILRRGLVALFAAAVALGAVTQAQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQGVKVQWTEFPGGPQLLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKGKKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPPADARAAFERGSVDAWVIWDPYQAAAEKQLQARTLKDGTGIVDNHQFYLATKPYAQKNPKVIQALVEEVRAVGEWSKANPDEVTQQVAPLLGLPADITLTSVKRQGYGAQFLTPPVVAAQQKIADTFYQLKLIPKPLSIADVVWTPPAAVAQAQ
>NZ_LT962480.1|WP_003318285.1|5737693_5738332_-|peroxiredoxin
MTLRLGDIAPDFEQESSEGRIRFHEWLGDSWGVLFSHPADFTPVCTTELGFTAKLKDEFAKRGVKAIALSVDPVDSHIKWIDDINTTQNTLVNFPILADADRKVSDLYDLIHPNANDTLTVRSLFVIDPNKKVRLTITYPASTGRNFHEILRVIDSLQLTDNYKVATPANWVDGDDVVIVPSIKDEAEIKQRFPKGYKAVTPYLRLTPQPNR
>NZ_LT962480.1|WP_011269280.1|5738501_5739848_-|outer-membrane-porin,-OprD-family
MKKSTLALAVTVGVLAQQASAAGFLEDSKASVSSRTLYFNNDLREGFRASDQRETSTGLKFDYLSGFTQGTVGFGLDAQAVMGLHLGGGIEHHNANTANTVVPTDTDGSSVSDWSRVGANAKMRFSKTELKVGNALAPNLPILVSNDGRLLPQAFEGGILTSKDLDNVTFTAGQLNKSIGRASSNWTDLSVAGATQTADQFRFAGADWKVTKDLTLQYYYANLEDFYKQHFLGLVHVYQIDNDQSFKTDLRYFNSSADGKNSEAAAGYRFNNNGGYASHTGEVDNQTWSAMFTYALGGHSFMVGHQQVGDSGGMVYLGQGNVVDGRGRPEGNGGSSFYLFTDSMINGFNRAGENTTFGQYSYDFAKVGVPGLKAAIAYLSGDDIRDVNRNLGSHSEWERDMRVDYVIQSGPLKGFGTTVRHGSFRGDSATTADTDQTRILFNYTYSFM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2405311 : 2460636

Pseudomonas_phage(67.35%)

protease,portal,tail,head,tRNA,terminase,integrase,capsid

attL 2412714:2412767|attR 2461794:2461847

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011267470.1\|2405311_2407234_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.8e-125	37.7
WP_170846037.1\|2407233_2407785_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	9.2e-14	37.3
WP_002553160.1\|2407845_2408040_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002553161.1\|2408069_2408426_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_003367019.1\|2408530_2409547_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	8.4e-29	39.3
WP_104683990.1\|2409574_2411953_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002553164.1\|2411956_2412259_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
WP_004408375.1\|2412239_2412596_+	MerR family transcriptional regulator	NA	NA	NA	NA
2412714:2412767	attL	NA	NA	NA	NA
WP_096137031.1\|2412849_2413962_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A0U4JIT5	Pseudomonas_phage	4.0e-32	31.4
WP_096137030.1\|2413961_2414174_-	hypothetical protein	NA	NA	NA	NA
WP_104683991.1\|2414211_2414673_-	hypothetical protein	A0A0U4IIZ7	Pseudomonas_phage	6.7e-58	71.5
WP_104683993.1\|2414724_2415054_-	hypothetical protein	A0A059VA44	Pseudomonas_phage	4.4e-56	91.0
WP_158661325.1\|2415263_2415476_-	hypothetical protein	A0A0A8IL71	Aurantimonas_phage	8.1e-11	54.8
WP_104683995.1\|2415472_2415949_-	hypothetical protein	A0A2H4PI30	Pseudomonas_phage	1.7e-27	64.3
WP_104683999.1\|2416865_2417489_+	hypothetical protein	K7PJU1	Enterobacteria_phage	3.2e-39	42.4
WP_104684001.1\|2417843_2418656_-	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	3.9e-45	39.3
WP_016567829.1\|2418696_2419050_-	hypothetical protein	NA	NA	NA	NA
WP_104684002.1\|2419135_2419723_-	hypothetical protein	NA	NA	NA	NA
WP_104684004.1\|2419722_2420061_-	hypothetical protein	NA	NA	NA	NA
WP_003364229.1\|2420499_2420901_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.2e-18	61.7
WP_032662050.1\|2421248_2421857_+	hypothetical protein	NA	NA	NA	NA
WP_129450392.1\|2422125_2422671_+	hypothetical protein	NA	NA	NA	NA
WP_016567843.1\|2423426_2423666_-	hypothetical protein	NA	NA	NA	NA
WP_032662046.1\|2423711_2424419_-	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	3.1e-38	46.4
WP_003364215.1\|2424502_2424742_+	hypothetical protein	A0A2H4J0V8	uncultured_Caudovirales_phage	3.8e-25	74.7
WP_032662044.1\|2425118_2425538_-	hypothetical protein	NA	NA	NA	NA
WP_104684011.1\|2425742_2426519_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104684012.1\|2426515_2427187_+	replication P family protein	NA	NA	NA	NA
WP_104684014.1\|2427183_2427480_+	DUF1364 domain-containing protein	A0A2D1GNQ4	Pseudomonas_phage	5.6e-42	84.4
WP_104684016.1\|2427476_2427908_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	4.2e-54	74.1
WP_104684017.1\|2427904_2429185_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	7.7e-221	86.4
WP_158661326.1\|2429201_2429507_+	hypothetical protein	NA	NA	NA	NA
WP_104684019.1\|2429503_2429824_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	2.2e-39	78.3
WP_104684020.1\|2429826_2430210_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	5.2e-32	50.8
WP_104684024.1\|2430989_2431418_+	hypothetical protein	NA	NA	NA	NA
WP_046719593.1\|2431512_2431884_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	3.4e-44	77.2
WP_016567852.1\|2431883_2432222_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	2.6e-27	73.4
WP_104684027.1\|2432858_2433089_+	hypothetical protein	A0A1S6UB66	Serratia_phage	1.7e-17	63.4
WP_104684028.1\|2433561_2433912_+	hypothetical protein	NA	NA	NA	NA
WP_024668580.1\|2433962_2434142_+	hypothetical protein	NA	NA	NA	NA
WP_104684030.1\|2434132_2434528_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	2.8e-57	75.2
WP_060414661.1\|2434695_2435181_+\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	1.2e-78	90.7
WP_057420836.1\|2435181_2436915_+\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	91.0
WP_085990167.1\|2436911_2437076_+	hypothetical protein	Q9MCB1	Pseudomonas_phage	5.5e-07	61.5
WP_060404360.1\|2437068_2438379_+\|portal	phage portal protein	A0A1V0E8B9	Vibrio_phage	5.4e-137	55.8
WP_104684032.1\|2438382_2439246_+\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	2.0e-92	62.5
WP_104684034.1\|2439242_2440436_+\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	8.9e-139	67.4
WP_104684035.1\|2440486_2440903_+	hypothetical protein	NA	NA	NA	NA
WP_104684037.1\|2440906_2441383_+\|head,tail	phage gp6-like head-tail connector protein	G3ENA1	Psychrobacter_phage	2.7e-14	38.1
WP_024639064.1\|2441382_2441721_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	4.8e-29	60.9
WP_104684039.1\|2441713_2442199_+	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	1.9e-55	67.3
WP_104684041.1\|2442198_2442567_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	8.5e-40	65.0
WP_003407816.1\|2442630_2443134_+	hypothetical protein	A0A0U4ISC1	Pseudomonas_phage	1.9e-50	61.0
WP_104684042.1\|2443143_2443581_+\|tail	phage tail assembly chaperone family protein, TAC	Q9MCA4	Pseudomonas_phage	7.2e-38	66.7
WP_173924660.1\|2443637_2443784_+	hypothetical protein	Q9MCA3	Pseudomonas_phage	2.8e-10	66.7
WP_104684044.1\|2443831_2446402_+\|tail	phage tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	2.2e-158	45.3
WP_057404769.1\|2446401_2446746_+\|tail	phage tail protein	A0A2D1GNJ1	Pseudomonas_phage	8.8e-31	53.5
WP_104684046.1\|2446965_2447196_-	hypothetical protein	NA	NA	NA	NA
WP_104684047.1\|2447688_2448387_+\|tail	phage minor tail protein L	A0A2D1GNF3	Pseudomonas_phage	5.6e-109	81.4
WP_104684049.1\|2448389_2449172_+\|tail	phage tail protein	A0A2D1GNP8	Pseudomonas_phage	2.1e-120	75.0
WP_104684050.1\|2449168_2449756_+\|tail	tail assembly protein	A0A2D1GNM2	Pseudomonas_phage	5.7e-70	69.4
WP_104684052.1\|2449760_2450153_-	hypothetical protein	NA	NA	NA	NA
WP_104684054.1\|2450277_2454975_+	DUF1983 domain-containing protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	49.5
WP_104684055.1\|2455291_2455978_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	9.3e-40	39.5
WP_104684057.1\|2456003_2457107_+\|tail	phage tail protein	A0A059VJZ6	Pseudomonas_phage	1.6e-153	75.1
WP_010416637.1\|2457106_2457421_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	1.4e-19	49.5
WP_010416640.1\|2457434_2457803_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	8.5e-40	74.8
WP_104684058.1\|2458098_2458632_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	1.6e-87	91.0
WP_104684060.1\|2458628_2459159_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	9.7e-61	83.3
WP_099315025.1\|2459215_2459395_+	hypothetical protein	NA	NA	NA	NA
WP_104684061.1\|2459391_2460636_+	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	3.0e-206	86.5
2461794:2461847	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3152852 : 3224048

Shigella_phage(40.0%)

protease,integrase,transposase

attL 3190528:3190542|attR 3204275:3204289

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162886835.1\|3152852_3154030_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.2e-52	39.0
WP_024642371.1\|3154115_3155066_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_024642388.1\|3156155_3156785_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_024641763.1\|3159402_3160455_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_024641764.1\|3162127_3163288_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA
WP_104684214.1\|3163328_3164783_-	MFS transporter	NA	NA	NA	NA
WP_024641766.1\|3165016_3166438_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_104684216.1\|3166434_3167049_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_080267652.1\|3167122_3167293_-	hypothetical protein	NA	NA	NA	NA
WP_011266541.1\|3167388_3167688_+\|transposase	IS3 family transposase	Q716C1	Shigella_phage	3.9e-19	54.1
WP_080267648.1\|3167684_3168149_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.3e-16	40.3
WP_080267649.1\|3168041_3168878_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024642061.1\|3170047_3170476_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024660460.1\|3170526_3171783_+	amidohydrolase	NA	NA	NA	NA
WP_032607581.1\|3171790_3172399_+	TRIC cation channel family protein	NA	NA	NA	NA
WP_024642059.1\|3172421_3173318_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024642058.1\|3173425_3174040_+	nitroreductase family protein	NA	NA	NA	NA
WP_060406552.1\|3174061_3174367_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_104684217.1\|3175172_3176096_-	transporter	NA	NA	NA	NA
WP_060406553.1\|3176189_3177641_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_024642054.1\|3177668_3178817_-	NAD(P)-dependent alcohol dehydrogenase	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	3.8e-09	26.9
WP_032607580.1\|3178863_3179820_-	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_046236261.1\|3180562_3181810_+	hypothetical protein	NA	NA	NA	NA
WP_080267065.1\|3181955_3182153_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_024660461.1\|3182529_3183351_-\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA
WP_024642050.1\|3183950_3185240_-	salicylate 1-monooxygenase	NA	NA	NA	NA
WP_024642049.1\|3185499_3185697_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_104684219.1\|3185784_3186138_+	hypothetical protein	NA	NA	NA	NA
WP_046236264.1\|3187151_3188519_+	MFS transporter	NA	NA	NA	NA
WP_024642046.1\|3189327_3190122_-	SDR family oxidoreductase	NA	NA	NA	NA
3190528:3190542	attL	NA	NA	NA	NA
WP_024642044.1\|3191423_3191828_-	response regulator	NA	NA	NA	NA
WP_046236276.1\|3195524_3195707_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_024660464.1\|3195807_3197796_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_024642041.1\|3198142_3199048_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046236265.1\|3199169_3199688_+	phenolic acid decarboxylase	NA	NA	NA	NA
WP_050594029.1\|3199700_3200669_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_024642038.1\|3201026_3201512_-	hypothetical protein	NA	NA	NA	NA
WP_024642037.1\|3202015_3202558_+	hypothetical protein	NA	NA	NA	NA
WP_024642033.1\|3204627_3205563_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
3204275:3204289	attR	NA	NA	NA	NA
WP_024642032.1\|3206150_3207197_+	phenylacetaldoxime dehydratase family protein	NA	NA	NA	NA
WP_024642031.1\|3207337_3208207_+	transporter	NA	NA	NA	NA
WP_024642030.1\|3208543_3210058_+	amidase	NA	NA	NA	NA
WP_024642029.1\|3210245_3210872_+	nitrile hydratase subunit alpha	NA	NA	NA	NA
WP_060406555.1\|3210892_3211546_+	nitrile hydratase subunit beta	NA	NA	NA	NA
WP_024642027.1\|3211542_3211983_+	nitrile hydratase accessory protein	NA	NA	NA	NA
WP_024642026.1\|3212055_3212733_+	energy-coupling factor ABC transporter permease	NA	NA	NA	NA
WP_104684220.1\|3217094_3217367_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024642202.1\|3217560_3218031_+	hypothetical protein	NA	NA	NA	NA
WP_024642201.1\|3218124_3218880_+	NAD-dependent deacylase	A0A220NU33	Escherichia_phage	5.7e-14	40.5
WP_024642200.1\|3219341_3219575_+	hypothetical protein	NA	NA	NA	NA
WP_104684222.1\|3219835_3220315_-	hypothetical protein	NA	NA	NA	NA
WP_024642198.1\|3220683_3221124_+	DNA-binding protein	NA	NA	NA	NA
WP_024642197.1\|3221107_3221962_-	hypothetical protein	NA	NA	NA	NA
WP_158527656.1\|3222215_3224048_+\|transposase	Mu transposase C-terminal domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

3744414 : 3752158

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004417288.1\|3744414_3745716_-	MFS transporter	Q6JIH2	Burkholderia_virus	8.2e-61	36.5
WP_003317940.1\|3745950_3746343_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.8e-56	81.5
WP_004417284.1\|3746344_3746707_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.7e-37	61.7
WP_003395712.1\|3746706_3747006_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.2e-29	62.6
WP_003411635.1\|3747002_3747338_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.0e-44	79.3
WP_024665363.1\|3747334_3748336_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.0e-164	84.5
WP_104684388.1\|3748432_3749431_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_024652457.1\|3749482_3750877_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003317946.1\|3750877_3752158_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8

DBSCAN-SWA_4

5376312 : 5410000

Pseudomonas_phage(57.69%)

plate,tRNA,lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032656582.1\|5376312_5377524_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003401947.1\|5377725_5379153_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_003401948.1\|5379156_5380251_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5380313_5380664_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_011269099.1\|5380872_5381907_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003401951.1\|5382040_5382469_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_011269100.1\|5382554_5383469_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003372679.1\|5383525_5384302_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003316306.1\|5384405_5384744_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003401955.1\|5384865_5385513_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003316303.1\|5385582_5386377_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003401957.1\|5386619_5387042_-	OsmC family protein	NA	NA	NA	NA
WP_058399200.1\|5387243_5387888_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_058399201.1\|5387899_5388595_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_011269105.1\|5388629_5389466_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.0e-68	56.2
WP_024639970.1\|5389462_5390512_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.1e-111	58.0
WP_003394873.1\|5390533_5391133_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_162496852.1\|5391544_5392057_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	1.4e-27	47.8
WP_003316293.1\|5392053_5392599_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.0e-69	73.3
WP_096135730.1\|5392769_5393246_-\|tail	phage tail protein	NA	NA	NA	NA
WP_096135729.1\|5393245_5395105_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	1.3e-38	53.7
WP_010439013.1\|5395115_5395715_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.7e-85	72.4
WP_096135728.1\|5395702_5396743_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.6e-131	69.8
WP_024652217.1\|5396732_5397131_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	4.4e-42	62.9
WP_003372720.1\|5397127_5397640_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
WP_003401994.1\|5397636_5398764_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.7e-113	60.2
WP_096127451.1\|5398767_5400192_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	3.4e-108	45.3
WP_096135727.1\|5400188_5402348_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.3e-71	40.2
WP_103360398.1\|5402347_5402554_-	hypothetical protein	NA	NA	NA	NA
WP_096135726.1\|5402478_5402775_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.7e-33	74.0
WP_011269114.1\|5402771_5403119_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	5.0e-42	70.4
WP_003422754.1\|5403179_5404676_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.2e-235	80.7
WP_003394899.1\|5404694_5404883_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.1e-14	73.5
WP_011269116.1\|5404879_5405470_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.4e-52	52.6
WP_011269117.1\|5405515_5405854_-	lipoprotein	A0A059VJW1	Pseudomonas_phage	1.2e-19	59.2
WP_003411734.1\|5405834_5406224_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_053275682.1\|5406346_5407519_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_011269119.1\|5407530_5407716_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	1.3e-12	89.5
WP_011269120.1\|5407988_5408432_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	4.6e-24	45.8
WP_024639984.1\|5408621_5409233_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.0e-49	49.2
WP_003402012.1\|5409387_5409636_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003316268.1\|5409757_5410000_+	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-16	51.2

DBSCAN-SWA_5

5514287 : 5546845

Bacteriophage(33.33%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104684614.1\|5514287_5514746_-\|transposase	transposase	NA	NA	NA	NA
WP_003402189.1\|5514872_5515976_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011269185.1\|5516759_5517707_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_170846044.1\|5517771_5518620_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011269186.1\|5518616_5519795_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.4
WP_024640219.1\|5520053_5521307_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.0e-102	54.0
WP_058823188.1\|5521324_5522575_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_003316160.1\|5522590_5522887_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_104684615.1\|5522883_5525904_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_024640216.1\|5525954_5526587_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_003402204.1\|5526792_5527650_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_024640215.1\|5527758_5528958_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_024659767.1\|5530445_5531462_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	8.4e-29	41.8
WP_104684616.1\|5531582_5537408_-	hypothetical protein	NA	NA	NA	NA
WP_003402209.1\|5537632_5538196_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_104684617.1\|5538175_5539243_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	6.8e-29	37.4
WP_104684618.1\|5539293_5540187_-	acyltransferase	NA	NA	NA	NA
WP_003402218.1\|5540380_5540884_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_080396087.1\|5540856_5540976_-	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_104684619.1\|5541263_5541893_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003402221.1\|5541962_5542145_-	hypothetical protein	NA	NA	NA	NA
WP_104684620.1\|5542141_5543275_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_032657259.1\|5543396_5544380_-	FecR family protein	NA	NA	NA	NA
WP_011269200.1\|5544376_5544895_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003402225.1\|5545138_5546845_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.9e-49	29.0

DBSCAN-SWA_6

5780005 : 5832877

Paramecium_bursaria_Chlorella_virus(28.57%)

protease,plate,integrase,transposase

attL 5775830:5775872|attR 5803119:5803161

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5775830:5775872	attL	NA	NA	NA	NA
WP_104684741.1\|5780005_5780986_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_104684652.1\|5780982_5781267_+	hypothetical protein	NA	NA	NA	NA
WP_104684653.1\|5781454_5782255_+	cyclodeaminase/cyclohydrolase family protein	NA	NA	NA	NA
WP_104684654.1\|5782336_5783098_+	hypothetical protein	NA	NA	NA	NA
WP_104684655.1\|5783398_5784715_+	hypothetical protein	NA	NA	NA	NA
WP_104684657.1\|5785349_5788460_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_104684658.1\|5788449_5789262_-	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_162496880.1\|5790226_5790592_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_024640495.1\|5791428_5791770_-	hypothetical protein	NA	NA	NA	NA
WP_024640494.1\|5791957_5792380_+	DUF1493 family protein	NA	NA	NA	NA
WP_173924666.1\|5792754_5793931_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-52	39.0
WP_104684660.1\|5793960_5794719_+	hypothetical protein	NA	NA	NA	NA
WP_024642613.1\|5794730_5795204_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_104684661.1\|5795299_5796739_-	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_024642611.1\|5796731_5797364_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_162496854.1\|5797521_5798070_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004407013.1\|5798230_5798725_+	hypothetical protein	NA	NA	NA	NA
WP_104684663.1\|5798996_5800271_-	OprD family porin	NA	NA	NA	NA
WP_011269317.1\|5800492_5800699_-	hypothetical protein	NA	NA	NA	NA
WP_011269318.1\|5800917_5802024_-	agmatine deiminase	A7IVE6	Paramecium_bursaria_Chlorella_virus	9.3e-106	50.6
WP_003372277.1\|5802029_5802908_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	2.7e-76	48.5
WP_104684664.1\|5803250_5806091_-	aminotransferase	A0A1V0SKB7	Klosneuvirus	2.9e-18	23.8
5803119:5803161	attR	NA	NA	NA	NA
WP_104684665.1\|5806404_5807487_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	4.1e-98	52.7
WP_004407004.1\|5807567_5808113_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	57.5
WP_162496881.1\|5808283_5810092_+	sensor histidine kinase	NA	NA	NA	NA
WP_024659894.1\|5810088_5811480_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_104684666.1\|5811466_5811940_+	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_060408875.1\|5812487_5813330_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_003372295.1\|5813326_5813893_-	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_003343604.1\|5813990_5814653_+	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_024660323.1\|5814697_5815138_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_003401941.1\|5815287_5816169_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003401939.1\|5816272_5817109_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003401937.1\|5817105_5819442_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_003401931.1\|5819651_5820092_+	hypothetical protein	NA	NA	NA	NA
WP_162496855.1\|5820225_5822160_-	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	4.9e-54	40.2
WP_104684669.1\|5823759_5825931_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_003401916.1\|5826631_5827381_+	hypothetical protein	NA	NA	NA	NA
WP_003318241.1\|5827450_5827984_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003343625.1\|5827998_5829501_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003318239.1\|5829528_5830011_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003343627.1\|5830010_5831843_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003318236.1\|5831806_5832877_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT962480

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection