CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_LT985195	Pseudomonas syringae strain CFBP 2116 plasmid PP4, complete sequence	0 crisprs	NA	0
NZ_LT985193	Pseudomonas syringae strain CFBP 2116 plasmid PP2, complete sequence	0 crisprs	NA	0
NZ_LT985194	Pseudomonas syringae strain CFBP 2116 plasmid PP3, complete sequence	0 crisprs	NA	1
NZ_LT985192	Pseudomonas syringae strain CFBP 2116 chromosome 1	8 crisprs	DEDDh,PD-DExK,csa3,cas3,DinG,RT	7

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT985192_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_1

1457829-1457961

Orphan

Consensus_repeat	Method
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_1

>merge|NZ_LT985192|1|1457829-1457961|CRISPRCasFinder
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACCACGCGGAGCGTGGGAACGAGAATCTGAGCCGAACACCAATTCACCTGAAGTCACAGAACCGCTGTGTGACGCAGAGCGTCACGAAAGGCATTACTACGC

>NZ_LT985192|1|1|1457829-1457961|CRISPRCasFinder
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACCACGC	GGAGCGTGGGAACGAGAATCTGAGCCGAACACCAATTCACCTGAAGTCACAGAACCG
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_004656016.1\|1447889_1448627_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT985192.1\|WP_004656031.1\|1454697_1456059_+\|porin	unknown	unknown	gnl\|CDD\|226185
NZ_LT985192.1\|WP_004656012.1\|1445050_1446877_+\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_LT985192.1\|WP_060403907.1\|1456167_1457043_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_LT985192.1\|WP_002552316.1\|1446873_1447839_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_LT985192.1\|WP_005732729.1\|1459075_1460545_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_LT985192.1\|WP_044319264.1\|1451655_1452564_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_LT985192.1\|WP_004656040.1\|1462064_1462319_-\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|378970
NZ_LT985192.1\|WP_060403908.1\|1453404_1454571_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
NZ_LT985192.1\|WP_002552324.1\|1457989_1458856_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183082
NZ_LT985192.1\|WP_060403904.1\|1464808_1466173_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_LT985192.1\|WP_002552321.1\|1452556_1453402_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LT985192.1\|WP_002552329.1\|1462522_1463002_+\|PA2169-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|131337
NZ_LT985192.1\|WP_060403909.1\|1450264_1451551_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_LT985192.1\|WP_002552318.1\|1448688_1450095_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_LT985192.1\|WP_044321789.1\|1463069_1464599_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_LT985192.1\|WP_002552331.1\|1466162_1466840_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_LT985192.1\|WP_044323222.1\|1460531_1461245_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694
NZ_LT985192.1\|WP_111780123.1\|1466850_1469955_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_LT985192.1\|WP_060403906.1\|1461262_1461937_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_004656016.1\|1447889_1448627_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.03657e-81
NZ_LT985192.1\|WP_004656031.1\|1454697_1456059_+\|porin	gnl\|CDD\|226185	COG3659, OprB, Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane].	5.26241e-170
NZ_LT985192.1\|WP_004656012.1\|1445050_1446877_+\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_LT985192.1\|WP_060403907.1\|1456167_1457043_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	5.20832e-82
NZ_LT985192.1\|WP_002552316.1\|1446873_1447839_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	4.16018e-170
NZ_LT985192.1\|WP_005732729.1\|1459075_1460545_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_LT985192.1\|WP_044319264.1\|1451655_1452564_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.35737e-73
NZ_LT985192.1\|WP_004656040.1\|1462064_1462319_-\|DUF3820-family-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	6.78719e-36
NZ_LT985192.1\|WP_060403908.1\|1453404_1454571_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.17728e-177
NZ_LT985192.1\|WP_002552324.1\|1457989_1458856_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	0
NZ_LT985192.1\|WP_060403904.1\|1464808_1466173_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	2.59347e-128
NZ_LT985192.1\|WP_002552321.1\|1452556_1453402_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.7775e-76
NZ_LT985192.1\|WP_002552329.1\|1462522_1463002_+\|PA2169-family-four-helix-bundle-protein	gnl\|CDD\|131337	TIGR02284, conserved_hypothetical_protein, conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.	3.88627e-44
NZ_LT985192.1\|WP_060403909.1\|1450264_1451551_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.95551e-36
NZ_LT985192.1\|WP_002552318.1\|1448688_1450095_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.69236e-49
NZ_LT985192.1\|WP_044321789.1\|1463069_1464599_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.84453e-61
NZ_LT985192.1\|WP_002552331.1\|1466162_1466840_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	8.49768e-97
NZ_LT985192.1\|WP_044323222.1\|1460531_1461245_+\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	2.21463e-73
NZ_LT985192.1\|WP_111780123.1\|1466850_1469955_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_LT985192.1\|WP_060403906.1\|1461262_1461937_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	1.91619e-119

>NZ_LT985192.1|WP_060403907.1|1456167_1457043_+|D-hexose-6-phosphate-mutarotase
MTSLDAQLPEHPLQRFFRSRRARPTFEWERHQLRDVLVIDHPQCQAVFSRQGAQLLHFQPQGQKPWLWCAAQWPQVGAIRGGVPVCWPWYGRHPGESGWPAHGWGRLLDWKLIDSSESEKGVSLHWRLQLWDWQVDLHAELGQGMELRLSTRHEDSEPCHFSHALHAYWRIGDVAEVALEGLDGAQGYDELSRQVCQQQGELRVVGGCQRVFEHAGALQLQDPTWQRRLNIDTGDSANTVVWHPGNRPLLGVCGSETAGFVRVEAASGSGDAFSLQPGEQVQLKLQASLAG
>NZ_LT985192.1|WP_004656031.1|1454697_1456059_+|porin
MKKINKGKSLSRFQLVSTLSVLGAMGLAGSVHAADAFSADSPWMTGDWNGKRTELLDKGYDFSLEYVSEMASNIKGGYNDDKTGRYSDQFALGMKVDLQKAFGWQDAEFKLAITERSGRNISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFDGALDVKAGRFGPGEDFNSFPCDFQNLSFCGSQVGNYVNTWYNWPISQWALRVKYNITPEVYAQVGVYEQNPSNLETGNGFKLSGSGTKGMILPVELVWTPTVNSLPGEYRVGFYKSTPNADDVYEDVNGQPQAATGAAFKSHDSKHGWWVVAQQQLTTHDGDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSRPKDDIGIGIARIHVNDDVQDRVRLANQISGINDYDNPGYLPVQSTEYNSEIYYGFHVTNWLTVRPNLQYVKHPGGVDQVDDAIVAGIKIQSKF
>NZ_LT985192.1|WP_060403908.1|1453404_1454571_+|ABC-transporter-ATP-binding-protein
MATLELRNVNKTYGSNLPDTLKNIDLSIKDGEFLILVGPSGCGKSTLMNCIAGLESISGGEILIDGQDVSSTSPKDRDIAMVFQSYALYPTMSVRENIAFGLKIRKMPQADIDAEVARVAKLLQIEHLLNRKPGQMSGGQQQRVAMGRALARRPKIYLFDEPLSNLDAKLRVEMRTEMKLMHQRLKTTTVYVTHDQIEAMTLGDKVAVMKDGIVQQFGTPKQIYTDPANLFVASFIGSPPMNFIPLRLQRKDGQLIALLDSGQARCELPVGVSHAGLEDREVILGIRPEQIMLAGAESNGMPTIRAEVQVTEPTGPDTLVFVTLNQSKVCCRLAPDVAPQVGESLTLQFDPSRVLIFDAQSGERLGVLGAPPLAERANNVPVEPQVIN
>NZ_LT985192.1|WP_002552321.1|1452556_1453402_+|carbohydrate-ABC-transporter-permease
MTSHVEKPGISVSRVLIYAVLILACLIYLVPLVVMLLTSFKTPEDIGTGNLLSWPSVITVIGWIKAWDIVDGYFWNSIKITVPAVVISTSIGALNGYVLSMWRFKGSELFFGLLLFGCFLPFQTVLLPASYTLGKMGLASTTVGLVFVHVVYGLAFTTLFFRNYYVSIPDALVKAARLDGAGFFTIFGRIILPMSTPIVMVCLIWQFTQIWNDFLFGVVFSSGDSQPITVALNNLVNTSTGAKEYNVDMAAAMIAGLPTLLVYVLAGKYFLRGLTAGAVKG
>NZ_LT985192.1|WP_044319264.1|1451655_1452564_+|sugar-ABC-transporter-permease
MSSVAAISKASPMDALQRWLPKLVLAPSMFIVLVGFYGYILWTFVLSFTNSTFLPTYSWAGLAQYSRLMDNDRWWVASKNLAVFGGMFIAISLVIGVLLAILLDQRIRREGVIRTIYLYPMALSMIVTGTAWKWLLNPGLGLDKMLRDWGWEGFRLDWLIDSDRVIYCLVIAAVWQSSGFVMALFLAGLRGVDQSIIRAAQMDGASLPMIYWRVVLPSLRPVFFSAIMILAHIAIKSFDLVAAMTAGGPGYSSDLPAMFMYSFTFSRGQMGMGSASAILMLGAILAILVPYLYSELRAKRHD
>NZ_LT985192.1|WP_060403909.1|1450264_1451551_+|carbohydrate-ABC-transporter-substrate-binding-protein
MNSMSRLAFVISLASLFPLSATAAESKGTVEVVHWWTSGGEKAAVDVLKAQVEKDGFTWKGDGISGGGGAAAMTVLKSRAMASNPPGAAQIKGPDIQDWAKMGLLDTDALKDVAKAEKWDSLLDKKVSDTVKYDGDYVAVPVNIHRVNWLWINPEVFKKAGIDKAPTTLEEFYAAGDKLKKAGFIPLAHGGQPWQDSTVFEAVVLSVMGADGYKKALVDLDKGALTGEGMVKSLTELKKVATYMDVDGKGQDWNLEAAKVINGKAGMQIMGDWAKSEWTAAKKVAGKDYQCVAFPGTDKAFTYNIDSLAVFKQKDKGTTAAQQDLAKVAMGEDFQKVFSINKGSIPVRQDMLADMDKYGFDSCAQTAAKDFLADAKTGGLQPSMAHNMATSLAVQGAFFDVITNYINDPKADPAETAKKLATAVKSVQ
>NZ_LT985192.1|WP_002552318.1|1448688_1450095_+|HAMP-domain-containing-protein
MLLLTLLAVLLAQTLSSVIWLSQLRATQTEGLVTSARSLAYSMAASVSYFRSLPLAYRPMVLDQLRSMGGTRFVVSLNDHPLDMQIMQPTPRKQAVLDVVGEVLRQRLGNGPDITVWFARPDELRIFNSGLKLDELPRSWAHYALTLEPVNPPVLVTQIEMAPGEWFYIASLLPEPYTSLEEQELPLQQVSFIVLTSMFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVVEGGGSEVIEVSRAFNAMRTRISRYLTERGQLFSAISHDLRTPITRLRLRVELLEDEHLQRKFSRDLDELELLVKGALQCVKDTDIHENIEPVDLNALLDCLVEPWLLADGNGRVTQQGEAQAAYPGKPLALRRCMGNLIDNALKYGHRAHLKVEDNATAFVLHVDDEGPGVPEQRLEHVFEPHFRLAGNQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPRTAE
>NZ_LT985192.1|WP_004656016.1|1447889_1448627_+|response-regulator-transcription-factor
MSSVSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDGFSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRAQFGQERPGGDVILFDEWRLDMVSHRLFHNDGEEVILSGADFALLKLFLDNPQQILDRDTIGNATRGRELMPLERIVDMAVSRLRQRLRDTGKSPRLIRTIRGSGYLLAANVNSQAGNGY
>NZ_LT985192.1|WP_002552316.1|1446873_1447839_+|glucokinase
MKLALVGDIGGTNARFAIWEDDTLHSVRVFPTIDYAGPEKAIEVYLQDLELQRGDISHVCLAVAGPVDGDFFQFTNSHWQLSREAFCADLKVDHLLLINDFTAMALGMTRLKEDEYLTVCPGAGKPDRPRVVVGPGTGLGIGTLIKLDGSRWLALPGEGGHADLPIGTAREALLWTRLMAEHEHVSAEVVLSGAGLLLLYQVSCALDDIEPVLKSPAAVTSAALAGDPVAAAVLEQFCVFLGRVVGNNVLTLGSLGGVYIVGGVVPRFTEFFINSGFKRAMAEKGVMSDYFKNLPVWLVTAEYPGLMGSGVALQQAFGSQI
>NZ_LT985192.1|WP_004656012.1|1445050_1446877_+|phosphogluconate-dehydratase
MHPRVLEVTERLIARSRDTRQRYLQLIRGAASDGPMRGKLQCANFAHGVAACGPEDKQSLRLMNAANVAIVSSYNEMLSAHQPYEHFPAQIKQALRDIGSVGQFAGGVPAMCDGVTQGEPGMELAIASREVIAMSTAVALSHNMFDAAMMLGICDKIVPGLMMGALRFGHLPTIFVPGGPMVSGISNKEKADVRQRYAEGKASREELLDSEMKSYHGPGTCTFYGTANTNQLLMEVMGMHLPGASFVNPYTPLRDALTAEAAHQVTRLTKQSGSFMPIGEIVDERSLVNSIVALHATGGSTNHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMSFLIRELLAAGLLHENVNTVAGYGLSRYTKEPFLEDGKLVWREGPLESLDENILRPVARPFSPEGGLRVMEGNLGRGVMKVSAVAPEHQIVEAPAKVFQDQKELADAFKAGELECDFVAVMRFQGPRCNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVCPEAFDGGPLALVRDGDVIRVDGVKGTLQVLVEASELAAREPAINQIDNSVGCGRELFGFMRMAFSSAEQGASAFTSSLETLK
>NZ_LT985192.1|WP_002552324.1|1457989_1458856_-|MurR/RpiR-family-transcriptional-regulator
MDRVRNLLEQIQGRLDELNKAERKVAEVILLNPQMATRLSIAALAQAAKVSEPTVNRFCRSFSVSGYPELKLQLAQSLASGAAYVSRAVEADDNPEAYTQKIFGSAIASLDSACQQLDPALISKSVDMLIQARQIHFFGLGASAPVALDAQHKFFRFNLAVTAHADVLMQRMIASVAHTGELFVIISYTGRTRELVEVARIARANGASVLGLTAAGSPLAQASTVSLNIPLPEDTDIYMPMTSRIIQLTVLDVLATGMTLRRGVDFQPHLRKIKESLNDSRYPIEDQG
>NZ_LT985192.1|WP_005732729.1|1459075_1460545_+|glucose-6-phosphate-dehydrogenase
MPLITVEPCTFALFGALGDLAVRKLFPALYQLDRAGLLHEDTKILALAREPGDEQSHLAYIEKSMRRFIPEAELEPDNLGRFLARLSYLHVDFLKAEDYVALAERVGNAETLIAYFATPASVYGAICENLASVNLAERTRAVLEKPIGHDLASSRRVNDAVAQFFPENRVYRIDHYLGKDTVQNLIALRFANSLFETQWNQNHISHVEITVAEKVGIEGRWGYFDQAGQLRDMIQNHLLQLLCLIAMDPPSDLSADSIRDEKVKVLKALAPFTPERLATQVVRGQYTAGYSEGKAVPGYLEEENSNTQSDTETFVALRADIRNWRWSGTPFYLRTGKRMPQKMSQIVIHFKEPPHYIFAPEQRLQISNRLIIRLQPDEGISLQVMTKDQGLDKGMQLRSGPLQLNFSDTYRSARVPDAYERLLLEVMRGNQNLFVRKDEIEYAWQWCDQLIAGWKKAGDAPKPYPAGTWGPMSSIALITRDGRSWYGDM
>NZ_LT985192.1|WP_044323222.1|1460531_1461245_+|6-phosphogluconolactonase
MAICDLELPAGLVARDFDTPQQLADALAANVAERLKQAIGENGLATLVVSGGRSPVAFFKSLAVQPLHWSKVVISLADERFVPTEHADSNAGLLQRHLLQGPVAKAKFLGLYSVAGSVEEAALAADQALAELPPIDVLILGMGDDGHTASLFPGSPNLKEALDLQGERRCLPMLAPSVPHQRLTLTRRLLASARSPILSVSGQAKLDTLRTALAGDDLAEMPVRAFLNPSLEIYWCP
>NZ_LT985192.1|WP_060403906.1|1461262_1461937_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MTQNENNQPLISMANKIAQIDELCAKAKILPVITIARDQDALPLADALAAGGMTALEVTLRSAFGLSAIRILREQRPELCVGAGTILDRKMLADAEAAGSQFIVTPGSTQDLLQAAVDSPLPLLPGVSSASEIMIGYAMGYRRFKLFPAEISGGVAAIKALGGPFNEVRFCPTGGVNEQNLKSYMALPNVMCVGGTWMIDNAWVKNGDWGRIQEATAQAMALFD
>NZ_LT985192.1|WP_004656040.1|1462064_1462319_-|DUF3820-family-protein
MGGLQVNPEKLRLLVTQEMPFGKYKGRLIADLPGHYLNWFAREGFPKGELGGLLALMQEIDHNGLGALLDPLRTRPRQSFKDKG
>NZ_LT985192.1|WP_002552329.1|1462522_1463002_+|PA2169-family-four-helix-bundle-protein
MTDINKETISILNDLIETSKDGEEGFRTSAEHAKSAQVKSFLANRSTEVAAAVRELQAEVTALGGKPEDSSSVSGALHRAWVNLKSMVTSDDDKAVLEEVEKGEDVAKKAYREALEKARAKNVSPNVIALIEKQQAGVLANHDKVKALRDAARAAHAAS
>NZ_LT985192.1|WP_044321789.1|1463069_1464599_-|diguanylate-cyclase
MMLFASSRQDRLKWTRPELMLIFGSSLSMFAILGIVASLLARESDDAAQTAARAAANIVQLIDADVMHNAELYDSSLQGMISAWQRPDLQDLSPELRQLVLFDRSTAASFKGDLVLLDNKGAILADSLSVIPRNDNFSDRSYFKDHKADPSLGLHVSAPYKSRWGYKDWCISFSRRMSGPNGEFTGMVSAAMRLVYFKHLFMSQNLGVGSSINLINTAGILIVRYPDLEGEDLIGKDYSHSPNFQRILQEGHGSFAAMSTQLNARRLYTFSRVGNLPLVVVIGQSEDEVYAVWRRNAWLVGSATSVLCLGILWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETDLPGAMMIAEQIRKAAESLPLFPGAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKHKGRNRVEHRSSVAREMTDQV
>NZ_LT985192.1|WP_060403904.1|1464808_1466173_-|heavy-metal-sensor-histidine-kinase
MRVDAIALRLSGLFALVALVVFLLIGSALYLQVDKSLDLLPRAEVDARYSVLESAVGRFGNPEHWGKIKAKLELLSEEDKRLRFWVVSDNPLYEFGNPDANIRRFAQGAPGMHDLKLADHPFAFKVLVSEFPAKEQRPALRFLTAIDTETFWHTQHSLLVALISLATLGILLASALGYWVARIGLRPLTSLSQEVQKLAPPRLSGRLQLSPLPPELEQFVASFNSTLERVEQAYSRLESFNADVAHELRSPLTNLIGQTQVALTRGRSAEHYFEVLQSNLEELERLRSIINDMLFLASADQGTKVKAQTCASLADEVATTLDYLDFILEDAHVQVRVQGDASAPIEKPHLRRALINLLHNAVQHTDAGQVIEVTIESRDADVSISVTNPGVQIAPEHLPRLFERFYRVDASRSNSGANHGLGLAIVKAIALMHGGTVFVNSDKGVNTFGIQLPR
>NZ_LT985192.1|WP_002552331.1|1466162_1466840_-|heavy-metal-response-regulator-transcription-factor
MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGFGVLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLENRSAG
>NZ_LT985192.1|WP_111780123.1|1466850_1469955_-|multidrug-efflux-RND-transporter-permease-subunit
MSGRGSVSAWCIDHPVATLLLTFALVLLGVIAFPRLPIAPLPEAEFPTIQVTAQLPGASPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADSPVLILSVSSSLIPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAALGLTLADIRLAVQQTSLNLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVAWVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQRELPRLQEMLPATVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHNPHQKPGFGERLLASYERGLRKALAHQRLMLGVFGLTLALAVVGYILIPKGFFPVQDTAFALGTTEAAADISYPDMVEKHLQLAKIVGADPAVLAFSHSVGVSGSNQTIANGRFWISLKPRSERDVSVSEFIDRLRPKLAKVPGIVLYLRAGQDINLSSGPSRSQYQYVLKSNDGELLNTWTQRLTEKLRSNPAFRDMSNDLQLGGSVTHIDIDRSAAARFGLTTADVDQALYDAFGQRQISEYQTEVNQYKVILELDAQQRGKAESLAYFYLRSPLTNEMVPLSALAKVSAPRMGPLSISHDGMFPAANLSFNLASGVALGDAVSMLDQAKKEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVDFALQAQREQGLSPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVSQMLTLFTTPVIYLQLERLFHKCHPAPAAPALALHK

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Crispr_ID: NZ_LT985192_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_2

1521438-1521547

Orphan

Consensus_repeat	Method
GGCATGCGACGCAGAGCGCCGCACGATAGTTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_2

>merge|NZ_LT985192|2|1521438-1521547|CRISPRCasFinder
GGCATGCGACGCAGAGCGCCGCACGATAGTTGCGGTTATCGTTCCCATGCTCCAGCGTGGTAACGCAGCCCGGAACGGCATGCGACGCGGAGCGCCGCACGATAGTTGCG

>NZ_LT985192|2|2|1521438-1521547|CRISPRCasFinder
GGCATGCGACGCAGAGCGCCGCACGATAGTTGCG	GTTATCGTTCCCATGCTCCAGCGTGGTAACGCAGCCCGGAAC
GGCATGCGACGCGGAGCGCCGCACGATAGTTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_044319588.1\|1525127_1526081_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_LT985192.1\|WP_044323371.1\|1524226_1524724_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379324
NZ_LT985192.1\|WP_060403892.1\|1517124_1518546_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_LT985192.1\|WP_002552382.1\|1521594_1521756_-\|DUF2986-domain-containing-protein	unknown	unknown	gnl\|CDD\|314517
NZ_LT985192.1\|WP_060403889.1\|1524798_1525086_-\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|183233
NZ_LT985192.1\|WP_002552375.1\|1515333_1515714_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319937
NZ_LT985192.1\|WP_044319582.1\|1520131_1520548_+\|ester-cyclase	unknown	unknown	gnl\|CDD\|227772
NZ_LT985192.1\|WP_060403888.1\|1526138_1527158_-\|transketolase-family-protein	unknown	unknown	gnl\|CDD\|226467
NZ_LT985192.1\|WP_005743283.1\|1527154_1528003_-\|transketolase	unknown	unknown	gnl\|CDD\|238970
NZ_LT985192.1\|WP_002552376.1\|1515812_1516292_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_LT985192.1\|WP_044319585.1\|1523740_1524196_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_LT985192.1\|WP_002552381.1\|1520675_1521302_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198298
NZ_LT985192.1\|WP_002552372.1\|1511034_1512144_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962
NZ_LT985192.1\|WP_004656170.1\|1529423_1530173_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_LT985192.1\|WP_060403887.1\|1530361_1531279_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_LT985192.1\|WP_044319595.1\|1516454_1517075_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_LT985192.1\|WP_060403893.1\|1513278_1515084_-\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NZ_LT985192.1\|WP_060403890.1\|1521822_1523568_-\|OPT/YSL-family-transporter	unknown	unknown	gnl\|CDD\|367370
NZ_LT985192.1\|WP_111780124.1\|1518855_1520043_+\|NO-inducible-flavohemoprotein	unknown	unknown	gnl\|CDD\|237337
NZ_LT985192.1\|WP_054071374.1\|1512153_1513263_-\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380618

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_044319588.1\|1525127_1526081_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	5.42617e-73
NZ_LT985192.1\|WP_044323371.1\|1524226_1524724_-\|ATP-binding-protein	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	8.1735e-31
NZ_LT985192.1\|WP_060403892.1\|1517124_1518546_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.19799e-132
NZ_LT985192.1\|WP_002552382.1\|1521594_1521756_-\|DUF2986-domain-containing-protein	gnl\|CDD\|314517	pfam11661, DUF2986, Protein of unknown function (DUF2986). This family of proteins has no known function.	9.50843e-06
NZ_LT985192.1\|WP_060403889.1\|1524798_1525086_-\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|183233	PRK11616, PRK11616, hypothetical protein; Provisional.	4.18751e-11
NZ_LT985192.1\|WP_002552375.1\|1515333_1515714_-\|VOC-family-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	5.33597e-32
NZ_LT985192.1\|WP_044319582.1\|1520131_1520548_+\|ester-cyclase	gnl\|CDD\|227772	COG5485, COG5485, Predicted ester cyclase [General function prediction only].	1.85125e-53
NZ_LT985192.1\|WP_060403888.1\|1526138_1527158_-\|transketolase-family-protein	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	1.18222e-146
NZ_LT985192.1\|WP_005743283.1\|1527154_1528003_-\|transketolase	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	3.86392e-120
NZ_LT985192.1\|WP_002552376.1\|1515812_1516292_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.00872e-43
NZ_LT985192.1\|WP_044319585.1\|1523740_1524196_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.17195e-13
NZ_LT985192.1\|WP_002552381.1\|1520675_1521302_+\|glutathione-S-transferase	gnl\|CDD\|198298	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	7.73403e-40
NZ_LT985192.1\|WP_002552372.1\|1511034_1512144_-\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.94308e-74
NZ_LT985192.1\|WP_004656170.1\|1529423_1530173_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	2.8023e-87
NZ_LT985192.1\|WP_060403887.1\|1530361_1531279_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	4.11757e-69
NZ_LT985192.1\|WP_044319595.1\|1516454_1517075_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.50006e-27
NZ_LT985192.1\|WP_060403893.1\|1513278_1515084_-\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
NZ_LT985192.1\|WP_060403890.1\|1521822_1523568_-\|OPT/YSL-family-transporter	gnl\|CDD\|367370	pfam03169, OPT, OPT oligopeptide transporter protein. The OPT family of oligopeptide transporters is distinct from the ABC pfam00005 and PTR pfam00854 transporter families. OPT transporters were first recognized in fungi (Candida albicans and Schizosaccharomyces pombe), but this alignment also includes orthologues from Arabidopsis thaliana. OPT transporters are thought to have 12-14 transmembrane domains and contain the following motif: SPYxEVRxxVxxxDDP.	1.58967e-93
NZ_LT985192.1\|WP_111780124.1\|1518855_1520043_+\|NO-inducible-flavohemoprotein	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	0
NZ_LT985192.1\|WP_054071374.1\|1512153_1513263_-\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380618	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type 1 periplasmic sugar-binding protein-like fold.	1.96538e-128

>NZ_LT985192.1|WP_002552381.1|1520675_1521302_+|glutathione-S-transferase
MITVHHLNNSRSQRILWLLEELDLPYEIKRYQRDPKTNLAPPELKTVHPLGKSPVIEDGPHVVIESGAIVDYLIRRHGDGRLQPDPASATYDEYVQWLHFAEGSAILPLMLNLYVGRLGDAGAPLHPRIQSELANYLGYLNDSLGLTPYLLGEDLSGADIQMSFIGEFAKAQGMLQPYPNVTAWVERLQSRPAYRKALEQGGEYSFAK
>NZ_LT985192.1|WP_044319582.1|1520131_1520548_+|ester-cyclase
MNLAEQYRAYIACLNERRWQDLGDFVDDDVQYNGERISVAGYRAMLENDVRIIPDLRFNIDLLVVEASQVAARLIFNCSPQGRFLGLDAHGQRITFSENVFYTFSDGKIVSVWSVIDKAAVERELRGEPAAGSSDRGT
>NZ_LT985192.1|WP_111780124.1|1518855_1520043_+|NO-inducible-flavohemoprotein
MLSTAHRDIIKATVPILETGGEALSTHFYRIMLNDYPQVRPLFNQANQANGAQPRALANAVLMYARNIDRLENLGPLAAQIVNKHVALQILPEHYPIVGACLLRAIREVLGAEIATDAVIDAWAAAYQQLADMLINAERDVYESIAAAPGGWRGGRLFKVVRKVPESSEIMSFYLQPVDGKPVIAHKPGQYIGIRLNTEGGEIRRNYSLSAPANGVSYRISVKREQGGVASGYLHDQVAVDDTVELFPPSGEFVLIEGSKPLVLISGGVGITPTLAMAEAALQAGGRHVVFIHYARNARVQAFQAVIDDWRERYAQFAAHVVYSEATAGDVPANTVTGLASTEHLQQWLPEDTDVEAYFLGPKPFMVFIKRALHELGVPDRQSHYEFFGPAEALA
>NZ_LT985192.1|WP_060403892.1|1517124_1518546_-|sugar-porter-family-MFS-transporter
MSSSSTSAAADPQGQQSASPNRLIFISVLVATMGALAFGYDTGIIAGALPFMTLPTDQGGLGLDAYSEGMITASLIVGAAFGSLASGYISDRFGRRLTLRLLSVLFIAGALGTAIAPSIPFMVAARFLLGIAVGGGSATVPVFIAEIAGPSRRARLVSRNELMIVSGQLLAYVLSAVMAALLHTPGIWRYMLAIAMVPGVLLLVGTFFVPPSPRWLASKGRFNEAQDVLEQLRTNKQDAQREVDEMKAQDEEARHRPKARELLRQGWVIKLLLIGIGLGFTAQLTGVNAFMYYTPIILKNTGMGTNAALTATIGNGVVSVIATLLGIWAIGRYGRRHLLMTGLVMVILMQAALGCVLQFMPQNLTQSYTALACILVFLLFMQMCISPVYWLLMSELFPMQVRGLLTGTAVSMQWLFNASVAFTFPIAVDTIGNPTFFIFAAINVGSLIFVFLCLPETKGKSLEQIEKHLKKEL
>NZ_LT985192.1|WP_044319595.1|1516454_1517075_+|LysE-family-translocator
MLDLTQVLTYSAALGIAAAIPGPGMAALVARSVSGGALSGFCLLAGLILGDLTYLSFAVFGLAMIAEHFNALFQVVRWGAAIYLCYLAWQFWFADHQAIEIGKSAKKTELLSAAASGLTITLGNPKTIAFYLALLPLVIHLETVSLQTWGLVLVPLTVLVLLGVGAVFIFAALRIRHLLSSERAQRKLFRGAAAIMVAAAASMLVR
>NZ_LT985192.1|WP_002552376.1|1515812_1516292_-|Lrp/AsnC-family-transcriptional-regulator
MTSPTLSSIDMRILTALQQDGRITNQTLADQIGMSASPCWRRVKQLEEHRYVLGYRAVLDRRKIGLGVMVFIRVSIDSHSEAEARKFEQEVMQLENVVACYSIGGDADFLLQVVARDLDSFADFAMTVVRRLPGIKEMQSMFVLKEIKPFVSFPVKPAA
>NZ_LT985192.1|WP_002552375.1|1515333_1515714_-|VOC-family-protein
MSTTEQATVTFDSAIPILRMFDERKAREFYLDFLGFSVEFEHRFEADLPLYLGISRNGLHLHLSEHHGDACPGAAVFIPTQNIEQLRDELLGKQYGYARPDIVQQGWGQVLEVCDPFGNRIRFCQS
>NZ_LT985192.1|WP_060403893.1|1513278_1515084_-|allophanate-hydrolase
MTALDISQLQSALRSGQTTLTALVQTLTAHIDADDRAEVWIHRVPVTQLLERAKTLESIAAEAGDSVYEQLPLFGVPFAVKDNFDVAGMPTTAACPAFAYTPKENAHVVQLLLDSGAILMGKTNLDQFATGLVGVRSPYGAVRNAQDPAYVSGGSSSGSAVAVARGYVSFALGTDTAGSGRVPAGFNGIVGLKPSLGLFSSRGVVPACRTLDCPSIFAGDVLQAWQVAQVIAAYDPLDPASVAVQALAVQRRARRVAVPRHCEFFGDAQAQTAYIKTLEALQSDPLVTIEPIDFDVFAEAAALLYQGPWVAERRAAVGRFFTTHADDIHQVVRGILQSAASFDAVDTFNARYRLAELTRTAQQLLTDIDVLVVPTAPCMPTIEAVLGNPVELNSQLGYYTNFVNLMNMCAIAIPADLRADGLPAGITLIGSAGTDQRLAEIAAAWQPLFGQADQRDAVAMAPLPYNSPTVQVAVVGAHLVGQPLNWQLLEGGARLLRTTTTSADYRLYALAATTPPKPGLVRVAEQGASIEIEVWEMPLSQFGAFVAAIPAPLGIGSLQLADGQWVKGFICEPGGLEGALDITDYKGWRAYRAAHTSSIAQ
>NZ_LT985192.1|WP_054071374.1|1512153_1513263_-|BMP-family-ABC-transporter-substrate-binding-protein
MSNVDRRSFIKLAGIIGLSAALPFGRAYSADAPLVVGFIYVGARDDFGYNQAHAQAAAIIKTLPNVKVIEEENVPETVAVQKTMEAMIRQDGATLIFPTSFGYFEPHVVKVAKKYPDVRFAHCGGLWQKGKDPINAGSFFGYIDEAQYLNGVIAGHMSKSKKLGFVAAKPVPQVLRNLNAFAMGARSVDPSIVTTVIFTGDWSLPVKEAEAANGLIDQGCDVLTCHVDGPKVIVETAEKRGVMTCGYHASQAALAPKGYLTGAEWNWETPYRAHVAAAQSGAPMINFLRGGLKEGFVKTSAYGPSVTADAKQQADAIKAQMMAGQFVIFKGPLKDNKGAVVIADGVSQGQTDIALESMNYLVEGVLGQL
>NZ_LT985192.1|WP_002552372.1|1511034_1512144_-|ABC-transporter-permease
MSLSISLRRLASALLPGLPTVLAVFSSCVLFGLFLAVQGKPAWQALQLVGEGAFGSWFALENTLQRAAPLMLTALCVALPARAGLIIIGGEGALVLGGLAAAVTPLWLGPLSPGVMLVCMALAAMSVGALWIGLSGWMRQRRGVNETISSLLLSYIALALFRQLVEGPLRDPASLNKPSTPPLDDAYRLGTISDGFEVHWGLVAGVVACLLAYVLVRHSIKGFALAVVGGNVRTALMIGLPVDRLILLSCLLGGAAAGLAGMFEVTAVQGSANAALIAGYGTSGILVAFAARHHPLAIIVCAILLGGLEASGGLLQRRLGLPDATTLILEGLLFTNLLLWEALGGRIAAWKIRLTASPASLDKGALQHG
>NZ_LT985192.1|WP_002552382.1|1521594_1521756_-|DUF2986-domain-containing-protein
MNRRKKIQQLLKAHAKKASAKLAPQSKAKYISKADRLKLAAEADQDSISLSEG
>NZ_LT985192.1|WP_060403890.1|1521822_1523568_-|OPT/YSL-family-transporter
MLSTSPSIPLASPVERELSLRAVITGVVLGILLTPSNVYAGLKIGWSFNMSIIALLIGYAIWQGLSKRSSAHLPWTLHESNINQTVASAAASIISGGLVAPIPAYTLLTGQQLDAVPMIAWVFSVSFLGIWIAWYLRPSLLNDKSLKFPEGMATLETLLHIYNHGREAAIRLKVLLSTALLSALAKWVDTFIWAFPRWSPSAQLERLTFTADPSLLLVGFGAIIGIRVGMTLLLGALLAWGGVGPWLLEQGLVILPADSSGPQFAALVEWLLWPGVSLMVCSTLASLVIRLWALHKSTRASGGTTWSMPKAGPAAGFVLAIILVVSLQALLFGINLWMALLTIPLAICLAAVAARVVGATGIPPIGAIGQLSQLSFGIVAPGQVPINLMSANTAGGSAGQCTDLMNDFKVGRAIGATPRKQLIAQTLGIFVGSIVGVLAYMALIPDPQSMLLTEEWPAPAVATWKAVAQTLTHGLDSLSASIRWAIFIGGLAGLLLGILDSTLPAHRTRYMPSAAALGLAFVLPASVSLMMALGAVLTWLVNCRWPSLTERFAITAAAGLIAGESITGVGASLWQMVGNVG
>NZ_LT985192.1|WP_044319585.1|1523740_1524196_+|GNAT-family-N-acetyltransferase
MTHVDIRKVIELPPQLLILEKEAVAQGFRFVTRLIDDWESGNNRFDAQGECLMGAFLNDDLVGIGGVSRDLRTQSNTGRLRRVYIAGSYRGQGIGRILVERLVSQASRHFRVLRLFTDTSSGSAFYARCGFQRVDEDDATHMKFLKEFASR
>NZ_LT985192.1|WP_044323371.1|1524226_1524724_-|ATP-binding-protein
MLATKLHLLCGKIASGKSTLAKSLAAEYSAILLSEDQWLSRLYPDEIKSVSDYVRLAHRIRDIIGPLVIDMLKSDICLVLDFPANTLADREWLLSLAEDAQVKHRLHYLDVEDDICLARLHARNEKADHDFAATDEQFKLITGYFCVPDTEEGLDILIHRRGFIK
>NZ_LT985192.1|WP_060403889.1|1524798_1525086_-|YceK/YidQ-family-lipoprotein
MFKQCLLLATAISLSGCWSLMYHLDGERCVYPGTRHGWAWCTKDVTSTWPWLIDVPFSLALDTLFLPYDLTAFLPENLGGDDRECHFNDGLNVLG
>NZ_LT985192.1|WP_044319588.1|1525127_1526081_-|alpha/beta-hydrolase
MNANELLDPAYHSFMDEPAGSWTHQTLPGIRARVGAAWTAATAARSEQHWTTGVSDVGIRLCLYRPGPPLEHPTPPVILYIHGGGFVLGSPEMADDYLAELAVELKAIIVAVDYRLAPEHPFPIPLEDCYAALEWIFSHGPTLGMNTGNLVIMGHSAGGGLAAALALLARNKGLRTLAGLVLIYPMLDHRTGAPDAPPANPTTGTFSWSRQANHFCWESLRGAYALDDDRKTLFSPALATDLSDLPPTFICVGALDLFLEEDLAFALTLSRSGVPVEMHVYPGVPHMFDQLPGEQTGQATQDIARAVRRMIAAGLCD
>NZ_LT985192.1|WP_060403888.1|1526138_1527158_-|transketolase-family-protein
MSSANNTSAPSVAPKKKLTTSAMIASIASEGQATRPAPFGHALAALAEQRQDIVGLSADLSKYTDLHIFAKAHPERFYQMGMAEQLLMSAAAGMAREGFVPFATTYAVFASRRAYDFICMAIAEDNLNVKIVCGLPGLTTGYGPSHQATDDLAIFRAMPNLMIVDPCDALEIEQAVPAIAAHQGPVYMRLLRGNVPLVLDEYGYTFEIGKAKTLRTGNDVLIISTGLMTMRALEAAKALQADGVDVAVLHVPTIKPLDEQTILAEARKPGRLVMTAENHSIIGGLGEAVATVLLRNGVTPTFRQIALPDAFLDAGALPTLHDRYGISTPAVCTQIKAWL
>NZ_LT985192.1|WP_005743283.1|1527154_1528003_-|transketolase
MTATTLSAPSTSLAQRAHNIRRHALRMGQVQGQGYVGQALGAADLLAVSYFHALNYRPEDPEWEQRDRFYLSIGHYAIALYAALIEAEIVPLDELETYGSDDSRLPMSGMATYTPGMEITGGSLGHGLGIAVGACLGLKRKASRSFVYNLLSDGELNEGSTWEAAMSASHWKLDNLIAIVDVNNQQADGHSSEVLAFEPIVDRWQAFGWFTQRVDGNDLNALVAAFDAARQHVGAQPRVIICDTKMGKGVAFLETREKTHFIRVDEHEWDVALNNLDEGKTV
>NZ_LT985192.1|WP_004656170.1|1529423_1530173_-|SDR-family-oxidoreductase
MLLQGKIAVITGAASERGIGRATAVTFARHGARVVIIDLDESAARDAAAALGEGHLGLAANVADEKQVHEAVSKIIAHYGRIDILVNNAGITQPIKTLDIRPGDYDKVLDVSLRGTLLMSQAVIPTMRAQSSGSIVCMSSVSAQRGGGIFGGPHYSAAKAGVLGLGKAMAREFGPDQVRVNSIAPGLIHTDITGGLMQDERRHAIIDGIPLGRLGAAQDVANAALFLASDLSSYLTGITLDVNGGMLIH
>NZ_LT985192.1|WP_060403887.1|1530361_1531279_+|LysR-family-transcriptional-regulator
MQPDEDAPLSLPPLKALQAFEQTARFGNLARAAEVLDLTPSAVSHQLARLEALIGRQLFVRAARGVTLTPVGEQYLKDVSGVLHSLAVATERAASDVSLDCLRLHSAPSFGLLWLMPRLEAFRVSHPDIQINLSCSYESLHFSRDKIDVDIRHGRPNWPSYEVRTLRDEKFAVLASPQLLARRPVHSAADLLDRELILSEATLLKWPEWFARHGLARPEKPYALSFDRSYMTLEATSHGLGFALESTLLAQKYLGTGELIEVAPQELTAPVAAHHLVFPRAHSGFPRVRRFLEWMEHELGQGFVF

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Crispr_ID: NZ_LT985192_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_3

2564365-2564488

Orphan

Consensus_repeat	Method
ACGCGGAGCGTGAGGAACGAGCGGCGTCTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_3

>merge|NZ_LT985192|3|2564365-2564488|CRISPRCasFinder
ACGCGGAGCGTGAGGAACGAGCGGCGTCTGGGATAACAAAGGTGACCTGAGTCGAACGTCAATCCACCTGAAACCACAGAACCGCTTTGTGACGCGGAGCGTGAGGAACGAGAGGCGTCTGGGA

>NZ_LT985192|3|3|2564365-2564488|CRISPRCasFinder
ACGCGGAGCGTGAGGAACGAGCGGCGTCTGGGA	TAACAAAGGTGACCTGAGTCGAACGTCAATCCACCTGAAACCACAGAACCGCTTTGTG
ACGCGGAGCGTGAGGAACGAGAGGCGTCTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_057401625.1\|2570256_2571147_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_LT985192.1\|WP_002553129.1\|2571223_2571448_-\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NZ_LT985192.1\|WP_057432709.1\|2554268_2555339_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_LT985192.1\|WP_005753503.1\|2555691_2556621_+\|pca-operon-transcription-factor-PcaQ	unknown	unknown	gnl\|CDD\|274127
NZ_LT985192.1\|WP_016981977.1\|2564581_2565910_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_LT985192.1\|WP_004665140.1\|2557477_2558080_+\|protocatechuate-3,4-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|274126
NZ_LT985192.1\|WP_010212247.1\|2568542_2569214_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
NZ_LT985192.1\|WP_002553125.1\|2560898_2561297_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
NZ_LT985192.1\|WP_060403654.1\|2572772_2573984_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_LT985192.1\|WP_002553131.1\|2572226_2572766_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NZ_LT985192.1\|WP_002553127.1\|2563066_2563954_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_LT985192.1\|WP_002553133.1\|2574071_2574998_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_LT985192.1\|WP_002553121.1\|2556746_2557466_+\|protocatechuate-3,4-dioxygenase-subunit-beta	unknown	unknown	gnl\|CDD\|131475
NZ_LT985192.1\|WP_060403653.1\|2569217_2570072_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|183586
NZ_LT985192.1\|WP_005732574.1\|2566527_2568435_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|225726
NZ_LT985192.1\|WP_060403344.1\|2561549_2562806_-\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_LT985192.1\|WP_002553130.1\|2571545_2572151_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_LT985192.1\|WP_005732565.1\|2555396_2555639_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NZ_LT985192.1\|WP_002553123.1\|2558166_2559516_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NZ_LT985192.1\|WP_057432705.1\|2559540_2560902_+\|3-carboxy-cis,cis-muconate-cycloisomerase	unknown	unknown	gnl\|CDD\|181627

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_057401625.1\|2570256_2571147_+\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	1.89417e-123
NZ_LT985192.1\|WP_002553129.1\|2571223_2571448_-\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	1.38937e-32
NZ_LT985192.1\|WP_057432709.1\|2554268_2555339_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.16945e-26
NZ_LT985192.1\|WP_005753503.1\|2555691_2556621_+\|pca-operon-transcription-factor-PcaQ	gnl\|CDD\|274127	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. [Energy metabolism, Other, Regulatory functions, DNA interactions].	2.48521e-146
NZ_LT985192.1\|WP_016981977.1\|2564581_2565910_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.44869e-88
NZ_LT985192.1\|WP_004665140.1\|2557477_2558080_+\|protocatechuate-3,4-dioxygenase-subunit-alpha	gnl\|CDD\|274126	TIGR02423, Protocatechuate_34-dioxygenase_alpha_chain, protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA. [Energy metabolism, Other].	6.46805e-89
NZ_LT985192.1\|WP_010212247.1\|2568542_2569214_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	1.26575e-57
NZ_LT985192.1\|WP_002553125.1\|2560898_2561297_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	1.94089e-67
NZ_LT985192.1\|WP_060403654.1\|2572772_2573984_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	2.86557e-161
NZ_LT985192.1\|WP_002553131.1\|2572226_2572766_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	3.56886e-104
NZ_LT985192.1\|WP_002553127.1\|2563066_2563954_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	6.57277e-12
NZ_LT985192.1\|WP_002553133.1\|2574071_2574998_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.36095e-15
NZ_LT985192.1\|WP_002553121.1\|2556746_2557466_+\|protocatechuate-3,4-dioxygenase-subunit-beta	gnl\|CDD\|131475	TIGR02422, Protocatechuate_34-dioxygenase_beta_chain, protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA. [Energy metabolism, Other].	5.39393e-136
NZ_LT985192.1\|WP_060403653.1\|2569217_2570072_-\|shikimate-dehydrogenase	gnl\|CDD\|183586	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.	0
NZ_LT985192.1\|WP_005732574.1\|2566527_2568435_+\|TIM-barrel-protein	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	7.67777e-139
NZ_LT985192.1\|WP_060403344.1\|2561549_2562806_-\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0
NZ_LT985192.1\|WP_002553130.1\|2571545_2572151_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.23227e-81
NZ_LT985192.1\|WP_005732565.1\|2555396_2555639_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	1.2394e-18
NZ_LT985192.1\|WP_002553123.1\|2558166_2559516_+\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.88236e-147
NZ_LT985192.1\|WP_057432705.1\|2559540_2560902_+\|3-carboxy-cis,cis-muconate-cycloisomerase	gnl\|CDD\|181627	PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional.	0

>NZ_LT985192.1|WP_002553127.1|2563066_2563954_+|DMT-family-transporter
MSTASTPLSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMACIFMPSAGLRVLRTKRPGLQALRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTALSVPLLHERVTRGQWVAVVVGFIGVMIIIHPGGELFTPAILLPLSSALCFALYQLLTRLVSPFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFAAPAMLAPFSYCQIVFAGLLGFVVFDHMPSPTAQAGIAIICLSGLAAAWQQRRKGG
>NZ_LT985192.1|WP_060403344.1|2561549_2562806_-|OprD-family-porin
MRANSSCKLLCGLSAAIAANLTPISGNAAGFVEDTKVNLNLRNFYINRNFVDPANAQNYAEEWTQNFILDARSGFTQGTVGFGVDALGLYSLKLDGGKGTGGTQLLPIHSDGRPADDFGRLAVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFQGGQITSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRSAFTSDRFNFGGGEYVFNEKRTQVGVWYAELEDIYHQQYFNLLHSQPLGSWTLGANLGYFQGKDDGQSLAGDLDNKTWSAMLSARHGGNTFYLGLQKVSGDSAWMRVNGTSGGTLANDSYNSSFDNAREKSWQLRHDYDFAALGAPGLTLMNRYISGDNVHTGAITDGEEWARETELAYVFQSGAFKSLSLKWRNSTMRRDYNTNQFDENRLIVSYPLSLL
>NZ_LT985192.1|WP_002553125.1|2560898_2561297_+|4-carboxymuconolactone-decarboxylase
MTEDERYEAGMQVRRAVLGDAHVDNSLSKLTPFNEEFQEMITRHAWGDIWTRPGLPRHTRSLITIAMLIGMNREGELRLHLKAAKNNGVTREEIKEVLMQSAIYCGIPAANATFHLAETVWDEMGVESLKED
>NZ_LT985192.1|WP_057432705.1|2559540_2560902_+|3-carboxy-cis,cis-muconate-cycloisomerase
MNRVSNQLFDAYFMQPEMREIFSDEGRVQGMLDFEAALARAQARVGLIPPELVADIELSCDARLFDFDALAIAIGSAGNSAIPLVKALGKQIAASSAEAERYVHMGATSQDVMDSGLILQLRRAIVLLERDLTLLADAMAEQAQRHAGTPLAGRTWLQQATPVTLGMKIAGWLGAVTRHRQRLNEIKPRLLCLQFGGASGSLAALGDQAFSVAEALAGELQLALPEQPWHTQRDRLVEFAGLLGLIAGSLGKLGRDVSLLMQTEVGEVFEPSAPGKGGSSTMPHKRNPVGAAVMISTATRAPGLVATMLAAMPQEHERSLGLWHAEWETLPELCCLVSGSLQQALQVLPGLQVDAERMASNLQSTKGLVLAEAVSISLAQRIGRDAAHHLVEQCCRRAVEQGAHLRQVLGETPQVSEQFSSDELDRLLDPAHYLGQARQWVERAVAEHTRISR
>NZ_LT985192.1|WP_002553123.1|2558166_2559516_+|MFS-transporter
MTLSASRPVPCTLDVQAFINAQPLSGYQWRVVALCFLIVFLDGLDTAAMGFIAPALSQDWGIDRASLGPVMSAALIGMVFGALGSGPLADRFGRKVVLVFAVFLFGLFSLASAYSSNIDQLLVLRLLTGLGLGAAMPNATTLLSEYTPERLKSLLVTSMFCGFNLGMACGGFVSAKLIPSMGWHSLLMLGGILPLILAMVLMVWLPESARFLVVRNRGAERIRKVLAPIAPKALAGITDFSVPEQKTVSSRNVLKVIFSGTYSAGTLLLWLTYFMGLVIVYLLTSWLPTLMRDSGASMEQSAFIGALFQFGGVLSAVGVGWAMDRYNPHKVIGLAYALAGVFAWLVGQSLGNVALLATLVLLAGMCINGAQSAMPSLAARFYPTQGRATGVSWMLGIGRFGAILGAWAGATLLGLGWSFEQVLTALVVPAALAAIAVLIKGWVSHSDAT
>NZ_LT985192.1|WP_004665140.1|2557477_2558080_+|protocatechuate-3,4-dioxygenase-subunit-alpha
MPVQLLQETPSQTAGPYVHIGLAPQVAGNPTRELEIWNEMARPDAPGEHIVLLGNVFDGNGHLIRDAYLEFWQADHQGAYHSEFDPERPFNGFGRTATTDDGQWILKTIKPGSAHNAAGVPMAAHINVSLFARGINIHLQTRLYFDDEAQANAQDPVLNLIEQPPRRETLVARRCTHDGQTAYRFDIRVQGEGETVFFDF
>NZ_LT985192.1|WP_002553121.1|2556746_2557466_+|protocatechuate-3,4-dioxygenase-subunit-beta
MSAADNSRFVIRDRNWHPKALTPDYKTSILRSPRQALVSIPQSISETTGPDFSHLKFGQHDNDLLLNFNNGGLPIGERILLAGRVCDQYGKPIPHTLVEIWQANAGGRYRHKRDAYLAPIDPNFGGVGRALTDSEGNYSFRTVKPGPYPWRNGPNDWRPAHIHVSISGPSIATRLVTQLYFEGDPLIPICPIVKAIANPDAVQSLIARLDLGMGNPMDCLAYRFDIVLRGQRKTHFENC
>NZ_LT985192.1|WP_005753503.1|2555691_2556621_+|pca-operon-transcription-factor-PcaQ
MNIDTRIKFRHLVCFLEVARQGSLARASDVLAISQPALSKSLKELETLLATTLFVRSKSGAALTEAGVAFMRFAGPSVQALREGVSSLRSGEHETVTARLGVLSTAESLLVPEVVHRLHERHPALIVSVMTGPSAYLLSQLRVGELDLVVGRMTDSPQIQGLTFEHLYNESMTLVVRNDHPLLTAPLKPESLEQFPLVLPLAGTTIRKFADSLFVQCGIRMPRQRLETLSLTLSRRYVQCSDAVWIAPLDAVSLELKGGTLVELDMGIREPGGSVGLCSNPALPLTRAAQWCVDELRGVGETYRKAQYA
>NZ_LT985192.1|WP_005732565.1|2555396_2555639_+|glutaredoxin-family-protein
MPPECQLFSTLGCPLCEVAEAVLLPFAIEHGLLVELVDICEDEQLFERYELRVPVLRRVDTGDELDWPFDAPQVASFLSR
>NZ_LT985192.1|WP_057432709.1|2554268_2555339_+|acyltransferase
MERLYSLQGLRGIAVLGVVLFHMMSVESKFSGGDILLPPLLDFFQLGVDLFFVISGFVMVIVSRGRFQSGVEARRFLFNRVSRIYPTYWLYFFITLAVYLVQPGMVNSGHGASNLIMSFLLLPNDKVLLVMVAWSLLFELWFYVVYSGFLLFRERSVPLLLGGWALIIIVFNVLADWQDYSPALKIILHPYALEFILGAALALFFYGRHSARVPTAAVLASLGGALLLGVPLIGYFRLYDSQGLLRMLMVGGTFGLLVLTLALLERRRQLAVPGFLVAVGDMSYTIYLSHLLVLGVIGRLWSLVGAWPESYLDNLFFALLMMAATVCYGWVGYRCFEKPVLDRANAFSKTHFRVST
>NZ_LT985192.1|WP_016981977.1|2564581_2565910_-|MFS-transporter
MLNTQTNPVAQAARAGMGEKIRGALAVGKTRWGMLALVFFATTLNYIDRAALGVMQPILAKEMSWTAMDYANINFWFQVGYAVGFVLQGRFIDKVGVKRAFFLAVLLWSLATGAHGLATSAVGFMVCRFILGLTEAANYPACVKTTRLWFPAGERAVATGIFNAGTNVGAMLTPALLPLILTVWGWQAAFIAMGSLGLIWVIMWRLKYYNPEEHPTVSKAELDYINQEVEPAPVKVPFTGILKMRGTWAFALAYAITAPVFWFYLYWLPPFLNQQYNLGISVTQMGIPLILIWLTADFGSVGGGILSSWLIGRGMRATTARLLSMLIFAITICSVVFAANASGLWVAVLAISLAVGAHQAWTANIWSLVMDYTPKHMMSTVFGFGGMCAAIGGMFMTQIVGAVLTATNNNYNVLFTMIPAMYFIALIWLYFMAPRKVPTLSE
>NZ_LT985192.1|WP_005732574.1|2566527_2568435_+|TIM-barrel-protein
MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLYYDGSPRNVRQICADLGIAITLFQPFRDFEGCRRDRLQRNVDRAERKFDLMQELGTDLVLVCSNASADSVGDENILLDDLSLLAERAGARNLRVGYEALAWGKHVNTWQQVWNLVRQVDHPALGVLLDSFHTLSLKGDPSAIAQIPGDKIFFVQMADAPILAMDVLEWSRHFRCFPGQGEFDLAGFLAPILRSGYTGPLSLEVFNDGFRAAPTRANAADGLRSLLYLEEKTRQLMARDEPAAVPEILFNPPAASTYNGVEFLEFAVDESHGARLSGWLQRLGFARLGQHRSKAVSLLGQGDIKIVLNAEPYSFAHSFFEAHGPSLCATALRVDDGHQSLERARAFKGQPYRGLVGPNEREIPSVRAPDGSLIYLVDSAGPGESIYDSDFVVDPQAVAKGGLQRIDHMAMALPADSLDSWVLFYKSILDFEADDEVVLPDPYGLVKSRALRSRCSTVRLPLNISENRNTAISHALSSYRGSGVHHIAFSCEDIFAEVSRAKEAGVPLLDIPLNYYDDLAARFDFDEEFLSELAYYNVLYDRDAQGGELFHVYTDAFDGRFFFEILQRKNGYVGYGAANVPVRLAAMAKARNVAARQARL
>NZ_LT985192.1|WP_010212247.1|2568542_2569214_+|TetR-family-transcriptional-regulator
MKKIDSAVAVEPAATVPKGRKNNPEKTREDILQAAVAEFVAHGLTGARVDAIAERTKTSKRMIYYYFGSKEQLYVEVLEKLYGAIRNTESELNLSELEPVEAIHRVVEFTFDHHDSNVDFVRIVCIENIHYGENVKQSDSIQAKSQNIIRALDGILRRGEASGLFRDGVHPVDLHLMISSFCFYRISNRHTFSEIFQIELWSEEVKQRHKAMICDAVLRYLKR
>NZ_LT985192.1|WP_060403653.1|2569217_2570072_-|shikimate-dehydrogenase
MTHAEKKSVLAGLIGSGIQASRTPAMHEQEGDAQGLRYLYRLIDIDALQLDISALPQLIESAQNCGFTGLNITFPCKQAVIPLLDELSAEARGIGAVNTVVFKDGKRIGHNTDCLGFAEGFQRGLDKAPRQQVVQMGAGGAGAAVAHALLSAGVECLTVFEVEPQRAQGLVDNLNEHFGAGRAKVGIDLPAAMAEADGLVNTTPVGMAKLPGTPLPVELLRPELWVAEIIYFPLETELLKHARALGCRTLDGSTMAVFQAVKAFDLFSGQSADAERMMAHFHTL
>NZ_LT985192.1|WP_057401625.1|2570256_2571147_+|pseudouridine-synthase
MPDSVFSAAQQQASTLYLPPGAWATVLDCLCAKFTAISREQWLDRIARGRVLDENGKAIAPDLAYREGLRIHYFREVPNETPIPVLETILYADEHLVVADKPHFLPVTPAGEYVEQTLLRRLIHRLGNPDLVPLHRIDRHTAGLVLFSANRQTRSAYQALFPTRQIDKFYEAIAPALPGLEFPRLHESRLVEGEPFFRMQEGAGASNTRTQIEVLERQDQLWRYGLYPVTGKKHQLRVHMAALGAGICNDPFYPDVVKNPVDDYQNPLKLLAKGLRFIDPLSGKQRQFESLLELDW
>NZ_LT985192.1|WP_002553129.1|2571223_2571448_-|YgdI/YgdR-family-lipoprotein
MKQRTLPAAFLLALSIASLAGCASPTVITLNDGREIQAVDTPKYDEESGFYEFKQLDGKQTRINKDQVRTVKDL
>NZ_LT985192.1|WP_002553130.1|2571545_2572151_-|molybdenum-cofactor-guanylyltransferase-MobA
MNVPAALPPCSILLLAGGRGQRMGGRDKGLIEWQGKALIEHLHRLTRPLTDDLIISCNRNIERYAQYADQLVQDDDADFNGPLAGIRAALPLARHQWLLVLPCDVPLVDEPLLQALREKAVECPERPIMVREGQHWQPLLCMIPIAHAATLEAAWQAGERSPRRALEPLQPVALQLEAGDPRLANLNTPCLLTGISENCGK
>NZ_LT985192.1|WP_002553131.1|2572226_2572766_+|molybdenum-cofactor-biosynthesis-protein-B
MKAKADTPFVPLNIAVLTVSDTRTRETDTSGQMFVDRLTDAGHGLIERVLLKDDLYKIRAQVATWIADDQVQVVLITGGTGFTGRDSTPEAVACLLDKQVDGFGELFRQISVPDIGTSTIQSRALAGLSNGTLVCCLPGSTNAVRTAWDGILAQQLDSRFRPCNFVPHLKQAEPCATRG
>NZ_LT985192.1|WP_060403654.1|2572772_2573984_+|molybdopterin-molybdotransferase-MoeA
MNNEPKTLLPVEEAIARLLAMAEATPITDRQRAPLADAEGRVLAVDLISTLDLPPWPNSAMDGYALRVADWSGEPLNVSQRIFAGQAPEPLAPGTCARIFTGAPMPEGADCVEMQENAEVLADQRVCFSEPLSVGQNIRPQGQETRVGDTVLAAGTRLGPIELGLAASLGLAELEVIRRVRVAVLSTGDELIEPGQPLGPGQIYNSNRVLLCSWLKRLECEVVDAGILPDDLAKTRTALANLHDVDLILSTGGVSVGEADFLGHALRKEGELTLWKLAIKPGKPLTFGHFRGVPVIGLPGNPASTLVTFALLARAYLLRRQGVIDVAPLQFPVPAGFVWTRPGNRREYLRGRLEQGRAVAYRNQSSGVLRSAAWADGLIEVREGSTVAEGDWVNFIPLSEVLG
>NZ_LT985192.1|WP_002553133.1|2574071_2574998_+|glycosyltransferase-family-2-protein
MAPLRVACVIPTYNGRKDLERLLDSLATQTASFDTLIVDSSSSDGTLELAQARCANVLRIDSKDFNHGGTRQMMVDLHPDYDVYVYLTQDAYVEDINAIANILLPFADPKVGAVCGRQLPHKNANLLAQHARLFNYPPTSQIKTLADARTLGIKTPFMSNSFAAYRGEALRAIGGFPRHVILSEDMYVTAKMLIDGWKAAYEGSAVCRHSHNYSLREEFCRYFDIGVFQSREAWIYETFGGIGGEGMRYVKSELKFLGPRRILWWPMSFVRNALKLLAYKLSKQEKRLPRGVKKKLGMYKRYWDSPYA

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Crispr_ID: NZ_LT985192_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_4

3971143-3971226

Orphan

Consensus_repeat	Method
CGACGCAGAGCGACGCACGATAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_4

>merge|NZ_LT985192|4|3971143-3971226|CRISPRCasFinder
CGACGCAGAGCGACGCACGATAGTTGCGATGATCGTTCCTCACGCTCCCGAACGGCATGACGACGCGGAGCGACGCACGATAGT

>NZ_LT985192|4|4|3971143-3971226|CRISPRCasFinder
CGACGCAGAGCGACGCACGATAGT	TGCGATGATCGTTCCTCACGCTCCCGAACGGCATGA
CGACGCGGAGCGACGCACGATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_005733729.1\|3971329_3972235_-\|catechol-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|239543
NZ_LT985192.1\|WP_060403155.1\|3978139_3979693_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_LT985192.1\|WP_005733728.1\|3972296_3972587_-\|muconolactone-Delta-isomerase	unknown	unknown	gnl\|CDD\|213786
NZ_LT985192.1\|WP_054097500.1\|3970482_3971028_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182749
NZ_LT985192.1\|WP_002554194.1\|3965408_3965861_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|179596
NZ_LT985192.1\|WP_060403156.1\|3979776_3980712_-\|transporter	unknown	unknown	gnl\|CDD\|226763
NZ_LT985192.1\|WP_005744635.1\|3967941_3968151_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NZ_LT985192.1\|WP_005744634.1\|3968147_3969032_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|182548
NZ_LT985192.1\|WP_044323094.1\|3980752_3981289_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NZ_LT985192.1\|WP_005780529.1\|3965857_3967945_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NZ_LT985192.1\|WP_002554192.1\|3962108_3962798_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_LT985192.1\|WP_057455032.1\|3973806_3974829_-\|anthranilate-1,2-dioxygenase-electron-transfer-component-AntC	unknown	unknown	gnl\|CDD\|183350
NZ_LT985192.1\|WP_044320909.1\|3972627_3973749_-\|muconate-cycloisomerase-family-protein	unknown	unknown	gnl\|CDD\|239434
NZ_LT985192.1\|WP_031597597.1\|3962776_3964165_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_LT985192.1\|WP_002554204.1\|3974844_3975354_-\|anthranilate-1,2-dioxygenase-small-subunit	unknown	unknown	gnl\|CDD\|132275
NZ_LT985192.1\|WP_002554193.1\|3964184_3964853_-\|polysaccharide-lyase-family-7-protein	unknown	unknown	gnl\|CDD\|378049
NZ_LT985192.1\|WP_161938310.1\|3975356_3976763_-\|anthranilate-1,2-dioxygenase-large-subunit	unknown	unknown	gnl\|CDD\|132272
NZ_LT985192.1\|WP_158662082.1\|3964907_3965183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_060403152.1\|3969028_3970462_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_LT985192.1\|WP_060403154.1\|3976968_3977979_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|373110

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_005733729.1\|3971329_3972235_-\|catechol-1,2-dioxygenase	gnl\|CDD\|239543	cd03460, 1,2-CTD, Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.	1.71779e-163
NZ_LT985192.1\|WP_060403155.1\|3978139_3979693_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.20271e-55
NZ_LT985192.1\|WP_005733728.1\|3972296_3972587_-\|muconolactone-Delta-isomerase	gnl\|CDD\|213786	TIGR03221, muco_delta, muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol. [Energy metabolism, Other].	4.71383e-50
NZ_LT985192.1\|WP_054097500.1\|3970482_3971028_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182749	PRK10809, PRK10809, 30S ribosomal protein S5 alanine N-acetyltransferase.	4.20133e-51
NZ_LT985192.1\|WP_002554194.1\|3965408_3965861_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	1.27228e-16
NZ_LT985192.1\|WP_060403156.1\|3979776_3980712_-\|transporter	gnl\|CDD\|226763	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion].	3.22953e-83
NZ_LT985192.1\|WP_005744635.1\|3967941_3968151_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	8.39455e-12
NZ_LT985192.1\|WP_005744634.1\|3968147_3969032_+\|HlyD-family-secretion-protein	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	8.33074e-75
NZ_LT985192.1\|WP_044323094.1\|3980752_3981289_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	2.34285e-54
NZ_LT985192.1\|WP_005780529.1\|3965857_3967945_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	9.99642e-174
NZ_LT985192.1\|WP_002554192.1\|3962108_3962798_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	1.6578e-105
NZ_LT985192.1\|WP_057455032.1\|3973806_3974829_-\|anthranilate-1,2-dioxygenase-electron-transfer-component-AntC	gnl\|CDD\|183350	PRK11872, antC, anthranilate 1,2-dioxygenase electron transfer component AntC.	0
NZ_LT985192.1\|WP_044320909.1\|3972627_3973749_-\|muconate-cycloisomerase-family-protein	gnl\|CDD\|239434	cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.	0
NZ_LT985192.1\|WP_031597597.1\|3962776_3964165_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	1.44758e-136
NZ_LT985192.1\|WP_002554204.1\|3974844_3975354_-\|anthranilate-1,2-dioxygenase-small-subunit	gnl\|CDD\|132275	TIGR03231, anthran_1_2_B, anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases. [Energy metabolism, Amino acids and amines].	3.37878e-89
NZ_LT985192.1\|WP_060403152.1\|3969028_3970462_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.36921e-67
NZ_LT985192.1\|WP_161938310.1\|3975356_3976763_-\|anthranilate-1,2-dioxygenase-large-subunit	gnl\|CDD\|132272	TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases. [Energy metabolism, Amino acids and amines].	0
NZ_LT985192.1\|WP_002554193.1\|3964184_3964853_-\|polysaccharide-lyase-family-7-protein	gnl\|CDD\|378049	pfam08787, Alginate_lyase2, Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426.	7.60161e-73
NZ_LT985192.1\|WP_060403154.1\|3976968_3977979_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|373110	pfam14525, AraC_binding_2, AraC-binding-like domain. This domain is related to the AraC ligand binding domain pfam02311.	1.44887e-27

>NZ_LT985192.1|WP_054097500.1|3970482_3971028_-|GNAT-family-N-acetyltransferase
MQYSGEGFSIRVLAFDDCELINRYEKANRKHLQPWEPLRDDDYFILENARSRVQQQWESMQSGSAIFFLVTEPDGGELLGRCSYTNIVRGVFQACNLGFSLAEAAQGRGLMQRALEVGNRYCFEQMGLHRIMASHMPANVRSERLLQSLGFEKEGYARAYLKIAGVWEDHVLRALINPNEA
>NZ_LT985192.1|WP_060403152.1|3969028_3970462_+|efflux-transporter-outer-membrane-subunit
MKRALRMAALGFTAVLSACQVVGPDYQLPKDGAINRPDLQGELAGRSVNTVSAPVPAHWWRLYQDARLDELVRQAIASNTDLRIAAANLQRARYQTSEAEAAGGFTNGAKIGAQRVQESGEAFLLTDKVPVANVGDVGLTTSYQFDLFGTLQRGIEAAQANVDANQAAVDTARITVVADVVRAYTQICAANEELDIARESLDLQQQSVTLNQRLRDAGRGDETQVTRSQTQFKSLRAEMPRYEARRQAAMFRLSMLLAKPVEQLPAGVSSCNALPHIAQVMPVGDGATLLKRRPDVRQAERHLAMSTAQIGVATGELYPDISIGASIGTTGLIENLGKPAANRWGFGPLLNWTIPSNGSRARIHQAEASAQAAMARFDGVVLNAIRETQTGLAQYTALLDRRDALKEAEQSAKEAADQTHRFYQAGRASFLADLQATRTYTDVRAQMAEANTQVAMGQINLFLALGGGWEKDDVPQK
>NZ_LT985192.1|WP_005744634.1|3968147_3969032_+|HlyD-family-secretion-protein
MKKPILTLGRVVLTLLVVTLAAVVVWRMVMYYMYAPWTRDGHIRADIVQIAPDVSGLIQKVEVTDNQPVHKGQVLFTIDQDRFRLALRQAQATVAERQETWEQARRENRRNRGLGNLVAREQLEESQSREARALSALGESKVAVDAAQLNLDRSVIRSPVDGYLNDRAPRDHEFVTAGRPVLSVVDAASFHIDGYFEETKLDGIHVGQGVDIRVIGDNARLTGHVVSIVAGIEDRDRSSGSNLLPNVNPAFSWVRLAQRIPVRIAFDDVPADFRMIAGRTATVSIIDDTQEGTR
>NZ_LT985192.1|WP_005744635.1|3967941_3968151_+|DUF1656-domain-containing-protein
MIGDLDISGIFIPTFLAMMGIAYLLFLAVHALLSRAHFYRLVWHRALFNVGLYALLLGAVDTLSRYLMT
>NZ_LT985192.1|WP_005780529.1|3965857_3967945_+|FUSC-family-protein
MNGFFSSVPPARDWFYGVRTFGASMLALYIALLMEMPRPYWAMATVYIVSSPFVGPTSSKALYRAAGTLAGAAASVLLVPMFVQTPLLLAIVVGLWTGTLLFLSLHLRTANSYALMLAGYTMPLISLPVVDNPQAVFDIAVSRTEEIFLGIICAAVVGAMFWPRRLAPVFQATTEKWFSDASTYSQRFISRTCQPEEIGALRNSMVGSFNSLEMMIGQLSHEGARKQTVRNANELRGRMIHLLPVIDALDDALWALERRTPELLASLKPVLQKACDWLESTADGPQREQWQQLHDELERLQPNSTQLDDRDQLLLSNTLFRLGEWIDLWLDCRTLQYAIKTDDQSPWRAVYRHWRLGRLTPFLDRGLMLYSVTSTVLAIIAASVLWILLGWKDGASAVALAAVSCSFFAAMDDPAPQIYRFFFWTLLSVVFASLYLFVVLPNLHDFPMLVLAFAVPFICVGTLTVQPRFFLGTLLTIVNTSSFISIQSAYDADFMNFLNSNLAGPAGLLFAFIWTLVFRPFGVELAVKRLTRFSWRDIASLSEDASLAEHRRMGVQMLDRLMQQLPRLTLTAQDTGIALRELRVALNMLDLLAYTRRATPAAQVLLRQVIDEVSGYFKHCRKAGERLPAPRGLLMAMDRARRSLTAQEMGDNPARLHLLHALSGLRLALLPGVEIVTVGGELTEQLPHNIDGAPL
>NZ_LT985192.1|WP_002554194.1|3965408_3965861_+|winged-helix-DNA-binding-protein
MLVDPLHRAVSSGLVAASRQWRRICQNTLVTYEISEACAGPLLAIARLGDGVHQVKVAQAAGMESPTLVRLLDQLCKAGIVCRSEDPNDRRAKALSLTDKGRALAGSIEQELTRLRADVLQGLQPADLEATLRVFQAFAEAAQGEHGGQV
>NZ_LT985192.1|WP_158662082.1|3964907_3965183_+|hypothetical-protein
MLARCGQPDYRLNRLFFKQQRQRNDANKPTQKDRCHYFDAISLHKADRHPFAADGDSSGPSYRVPRHFFEWCCVDARDFWAFYRRTVAIIF
>NZ_LT985192.1|WP_002554193.1|3964184_3964853_-|polysaccharide-lyase-family-7-protein
MIDLATWNLSVPVGSPATIIETPKLVKGYRDGYFQSGDTLFFWAPVTGSTTENAKYPRSELRETTSDGRVFNWAYSSADNFLRATLEVDQVPSTGKIVIGQIHCYQSTEPLLKVEYQYKEKLQTGNIVAKFRRTPDSEIEVINIAQGVPLNKQFNYTINLSPSGDLTVNAFDAVWYAKLDSAWASKLFYFKAGVYTQDNTGYTTEGGSATFYKLAIAHEKKN
>NZ_LT985192.1|WP_031597597.1|3962776_3964165_+|heavy-metal-sensor-histidine-kinase
MRRQPSLTLRSTLAFALVAMLTVSGAGLYLYQSIEETVMQRSDHAVLARLDHFRKLLRYDLTMDNLKGSPQLFENMLDSEEDIFIIGEPGKPPVISVNPQRAPLPELPTVAQDQPLRVDDLRSGLSLQGVPLRAAAVQVMSNGVAVRLQAAHLMVKEMAMLASFRQSIYIAVALAFLITAVLGYVLLRRGLRPLRRMAAHAAAITPASLHKRLDSHDTPVELQQLSDAFNAMLDRLDDGYRRLMQFSADLAHEIRTPVGSLMGHCQVALRQNRSADEYQVLLASNLEELERISRLVESILFLARADEAQAALERQPLDLHDELQRVAGYFEGLAEERNLRLSHSGQGTLLADPILLRRALSNLVANAIRYANENSEILIRVAAVDRQWRIEVENQGPVLPQATLARLFDRFYRGDASRHERSDSNGLGLAIVTAIMHLHGGRAEVAQPAAGRICFSLIFPAV
>NZ_LT985192.1|WP_002554192.1|3962108_3962798_+|heavy-metal-response-regulator-transcription-factor
MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDMNFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEVRPCDASLP
>NZ_LT985192.1|WP_005733729.1|3971329_3972235_-|catechol-1,2-dioxygenase
MSVRISQTDDVQQFFNEACGLDQPGGSPRMKSVVHRVLTETIKIIEDLRITPEEFWKAVNYLNVLGSRQEAGLLVAGLGLEHYLDLLMDAEDEQAGQTGGTPRTIEGPLYVAGAPLSDHYARLDDGQDPATVLFMTGQVRGTDGAPLANAIVDVWHANTGGTYSYFDPSQSAFNLRRRIRTDAQGRYRFQSIVPSGYGCPPDGPTQQLLDQLGRHGQRPAHIHFFISAPGHRHLTTQINLAGDKYLHDDFAYATRDELIAEIRFTEDANGRHADIDFDFVLQPATTVEDERRQERLRALEV
>NZ_LT985192.1|WP_005733728.1|3972296_3972587_-|muconolactone-Delta-isomerase
MLFHVRMTVKLPIDMPVDKAARLKADEKALAQRLQQEGTWRHLWRIAGLYANVSIFDVADAQALHDTLLQLPLYPYMEIEVTALCRHPSSIHQDDR
>NZ_LT985192.1|WP_044320909.1|3972627_3973749_-|muconate-cycloisomerase-family-protein
MSAITIERFETLIVDLPTIRPHKLAMHTLHGQTLVILRIRCSDGIIGIGEATTIGGLAYAGESPESIKVNLDKWFAPLLVGQDATNLNALMQRVDRAVRGNTFARSAVETALLDAQGKRLGLPVAELLGGRVRDGVEVAWTLASGDTGRDIEEAEHMLEMRRHRHFKLKIGAGEPARDIAHVAAIKRALGDRASVRVDINQAWSEAVAIRGCQLLAEAGVELIEQPLSRHDRAAMVRLNARSPIPLMADEAIESVQDSFALAQSGAASIFALKIAKVGGPRAVLRTAAIAEAAGIGLYGGTMLEGSVGTLAAAHAFATLDRLEWHTELFGPLLLTEDILVEPPVYRDFQLIIPDTPGLGLELDAERLSHFARS
>NZ_LT985192.1|WP_057455032.1|3973806_3974829_-|anthranilate-1,2-dioxygenase-electron-transfer-component-AntC
MTYKVAFSFADGKTLFCNVQNNELLLDAALRSGITLPMDCREGVCATCQGRCESGQYTQDYVDDEALSASDLAQRKVLSCQTRVKSDAAFYFDFASSLCDNTGPSALQGKVSQVELVSQGTAIVQVTLDEQNSGLDYLPGQYARLQIPGTDLRRSYSFANAPGSNTLEFLIRLLPDGAMSNYVRDRCQVGDVIQFEAPLGTFYLRHVDRPLTLVAGGTGLSAFLGMLDQIAAKGGCGQPVHLYYGVRTAQDLCQLARIEAYSQQIPGFRFVPVVSEEQADWSERRGYIVDHLDAAALAEVPTDIYVCGPPPMVESIKDWLHGHSLDASRLYFEKFADSSV
>NZ_LT985192.1|WP_002554204.1|3974844_3975354_-|anthranilate-1,2-dioxygenase-small-subunit
MSAQLQYRIEQFLYHMAEVCDAQDWDRYLDLFSEDSEFHLPQWDSEHVYTTDPRKGMSLIYYPNRGGLEDRVYRLRTGKAASTIPMPRTLHLISNVRIAPAGEGANGQAGELDVQVNWHTLYYRLQVAEQFFGRASYRLRPDGDSWKIARKHVVLLNDTINSVLDFYHL
>NZ_LT985192.1|WP_161938310.1|3975356_3976763_-|anthranilate-1,2-dioxygenase-large-subunit
MMSSAKTVSQWQHFVEGCLDFRPVEGVYRIAREMFTEPELFDLEMELIFEKNWIYACHESEIANNHDFMTMRAGRQPMIITRDGSGQLNALINACQHRGTTLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYPEGFDKATRGLRKARIESYKGFVFISLDVHGSDSLADYLGDAKVFFDMMVAQSATGELEVLPGKSAYTYDGNWKLQNENGLDGYHVSTVHYNYVATVQHRQQVNAEKGAAAGSTLDYSKLGAGDADTNDGWFSFHNGHSLLFSDMPNPSVRPGYATIMPRLVEEYGQSKAEWMMHRLRNLNIYPSMFFLDQISSQLRIIRPLAWNKTEINSFCLGVKGESDADRENRIRQFEDFFNVSGLGTPDDLVEFREAQRGFQARLERWSDISRGYEKWVDGATPNSEAIGISPVLTGTEFTHEGLYVNQHGNWQRFLLEGLARKAAEEHSLKLREV
>NZ_LT985192.1|WP_060403154.1|3976968_3977979_+|AraC-family-transcriptional-regulator
MKSEAVLPNDLRAHGLHAAHHDLDGARAWMSTICGPHSLQASAPHCLEFEHSANVLSAMSTVLGRIQYGTDVVIGVEPGSSLKSYSISLPLDGEQELDCGKGLLRSNAGTGLIISPFDSQRLSITGNCRKLQVAIDCCSMQRVLDELLERPAQAPLVFEPCINAELGATASWWRMVRYLVDEMDGDSDYFEHLPMARDLERSLIKGLILSQPNNYSAALNEKVQSRCPAYLKRAQQFIEDHCGDDIHLIDIERAAGIGPQKLHDSFKTHFGVSPVAYLKRFRLQSARRSLLQGHSGYNIAAIASQWGFNHLGRFAQDYQRLFGELPSQTLERGSRH
>NZ_LT985192.1|WP_060403155.1|3978139_3979693_-|methyl-accepting-chemotaxis-protein
MTIPSNSSAPSRPALICRTNLKGQIKHCSDGFAREHGYARDELLEASVTLLRHELMPAAVFASLWSTLGQGTPWMGIVCNRHRDGSQRWHNVYIKPVYGSEGVQGYGAIYLPLSSEQQHRAQVFFARWQRRGSPVSAVAAMTRWLSWSWPTLLVGSGIALACAALESAWLQGASALLGVLVLTGWQSWRQNRQVRAVLASHPKAFSAPALAGLYADMSATPALVNMALIAGEARLQTALSRIGMSGRLIDEHMGALHELIGHEARRLEEQRSESDQSVVALSEMTATIQEVSRNLQHIAEATGQAVEQSSQGQALAEQSLSAMQRLNASVAEISAAAGELSTATESIGSITDIISNIAGQTNLLALNAAIEAARAGDAGRGFSVVADEVRQLATRTQEATLNIQPLLQRFRQTTEQTVQLTHEGQTLSRQGMTAVTSVRESFSQVNEALDRISSMSVQIASAMEQQGQVAEDLNQQAMRIADASRQSAAKALDGRRISEEIGHQVEGLRSLAERFDR
>NZ_LT985192.1|WP_060403156.1|3979776_3980712_-|transporter
MKTQLMCVCGAGLLIAQGAGAYDLPVVNLGLTSFLDGGLPAGPGWYLQEYFQNYSADRLRDKDGKALGLPKQDLDYQVAVTQLSYLSNVRLGNASLGLNAVLPVVTRMKVDDGLNNAALRGQTGMGDLLIGPFIQFDPVMGPAGPRFVQRIELQVNLPTGEYDDKHAINPGNNAWSFNPYWAATYWFTPKWTASVRAHYLYNGKNDDPAQSFGNVSDIQAGQALHANFATEYAVTDQLRLGINGYWLKQITDTQVDGHDVSGRREKLWAIGPGAMYSFSQNDHVFVNAYFEQDVENRPDGSRVQMRYVHHF
>NZ_LT985192.1|WP_044323094.1|3980752_3981289_-|flavin-reductase-family-protein
MSTDIETTQTLCDAKDSDPRDLRGLLGQFATGVTVITTCTADGRKVGMTANSFSSVSLEPALVLWSLARSAPSLNDFCEASHFAINVLGAEQHGLSRHFSRPSSDKFAGVAHAAGTAGVPLLDDVVATLVCRNVRQYEGGDHLIFIGEIEHYRYSGAEPLVFHAGQYRIAAAHPGLAQ

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Crispr_ID: NZ_LT985192_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_5

4420891-4420972

Orphan

Consensus_repeat	Method
GGAAAGGCATGCGACGCAGAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_5

>merge|NZ_LT985192|5|4420891-4420972|CRISPRCasFinder
GGAAAGGCATGCGACGCAGAGCGTCGCACGATAGTTGCGATGATCGTTCCGCACGCCTGGAAAGGCATGTCGACGCAGAGCG

>NZ_LT985192|5|5|4420891-4420972|CRISPRCasFinder
GGAAAGGCATGCGACGCAGAGCG	TCGCACGATAGTTGCGATGATCGTTCCGCACGCCTG
GAAAGGCATGTCGACGCAGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_002554606.1\|4422559_4423324_-\|NAD-dependent-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_LT985192.1\|WP_060402874.1\|4425351_4426455_-\|DUF2066-domain-containing-protein	unknown	unknown	gnl\|CDD\|378267
NZ_LT985192.1\|WP_005782621.1\|4419146_4420475_+\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NZ_LT985192.1\|WP_002554602.1\|4418110_4418722_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|235662
NZ_LT985192.1\|WP_002554607.1\|4423317_4424022_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|168147
NZ_LT985192.1\|WP_002554611.1\|4427854_4428505_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_LT985192.1\|WP_002554595.1\|4411212_4412265_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234636
NZ_LT985192.1\|WP_004657225.1\|4421125_4421671_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_LT985192.1\|WP_044320849.1\|4412783_4414244_-\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NZ_LT985192.1\|WP_002554608.1\|4424239_4425313_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_LT985192.1\|WP_005782617.1\|4416142_4416793_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|162875
NZ_LT985192.1\|WP_060402872.1\|4414240_4415245_-\|threonine-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|180188
NZ_LT985192.1\|WP_002554596.1\|4412261_4412783_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612
NZ_LT985192.1\|WP_002554594.1\|4410643_4411216_-\|alpha-ribazole-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|274461
NZ_LT985192.1\|WP_060402875.1\|4426796_4427855_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_LT985192.1\|WP_002554613.1\|4429709_4429889_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_057421516.1\|4415237_4416146_-\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
NZ_LT985192.1\|WP_060402873.1\|4416789_4418085_-\|cobyrinate-a,c-diamide-synthase	unknown	unknown	gnl\|CDD\|234896
NZ_LT985192.1\|WP_111780168.1\|4421761_4422484_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_LT985192.1\|WP_002554612.1\|4428513_4429227_+\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_002554606.1\|4422559_4423324_-\|NAD-dependent-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	1.10268e-95
NZ_LT985192.1\|WP_060402874.1\|4425351_4426455_-\|DUF2066-domain-containing-protein	gnl\|CDD\|378267	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066). This domain, found in various prokaryotic proteins, has no known function.	4.11655e-77
NZ_LT985192.1\|WP_005782621.1\|4419146_4420475_+\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	2.61212e-106
NZ_LT985192.1\|WP_002554602.1\|4418110_4418722_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|235662	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase.	1.07916e-111
NZ_LT985192.1\|WP_002554607.1\|4423317_4424022_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|168147	PRK05642, PRK05642, DnaA regulatory inactivator Hda.	3.29558e-165
NZ_LT985192.1\|WP_002554611.1\|4427854_4428505_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.98634e-116
NZ_LT985192.1\|WP_002554595.1\|4411212_4412265_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|234636	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed.	2.96866e-171
NZ_LT985192.1\|WP_004657225.1\|4421125_4421671_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	5.65719e-42
NZ_LT985192.1\|WP_044320849.1\|4412783_4414244_-\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NZ_LT985192.1\|WP_002554608.1\|4424239_4425313_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.48785e-52
NZ_LT985192.1\|WP_005782617.1\|4416142_4416793_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|162875	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase. A previously published hypothesis that BluB, involved in cobalamin biosynthesis, is EC 1.16.8.1 (cob(II)yrinic acid a,c-diamide reductase) is now contradicted by newer work ascribing a role in 5,6-dimethylbenzimidazole (DMB) biosynthesis. The BluB protein is related to the nitroreductase family (pfam0881). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	3.85719e-79
NZ_LT985192.1\|WP_060402872.1\|4414240_4415245_-\|threonine-phosphate-decarboxylase	gnl\|CDD\|180188	PRK05664, PRK05664, threonine-phosphate decarboxylase; Reviewed.	0
NZ_LT985192.1\|WP_002554596.1\|4412261_4412783_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	5.77163e-97
NZ_LT985192.1\|WP_002554594.1\|4410643_4411216_-\|alpha-ribazole-phosphatase-family-protein	gnl\|CDD\|274461	TIGR03162, Adenosylcobalamin/alpha-ribazole_phosphatase, alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	7.79103e-64
NZ_LT985192.1\|WP_060402875.1\|4426796_4427855_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_LT985192.1\|WP_057421516.1\|4415237_4416146_-\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	1.64956e-140
NZ_LT985192.1\|WP_060402873.1\|4416789_4418085_-\|cobyrinate-a,c-diamide-synthase	gnl\|CDD\|234896	PRK01077, PRK01077, cobyrinate a,c-diamide synthase.	0
NZ_LT985192.1\|WP_111780168.1\|4421761_4422484_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.68395e-34
NZ_LT985192.1\|WP_002554612.1\|4428513_4429227_+\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	1.2752e-23

>NZ_LT985192.1|WP_005782621.1|4419146_4420475_+|sorbosone-dehydrogenase-family-protein
MFRLRPHYAVLLLVAGGLAACGESSTLQVSDGTGPSPKLPEPNKTLIPTVNIAPAVGWEKGAKPVAAPGTQVAAFAENLDHPRWLYVLPNGDVLVAETNSPAKPDDSKGIRGWVMEKVMGRAGAGVPSANRITLLRDVDKDGVAETRTVFLQNLNSPFGMTLVGNKLYVADTDRLISFPYEAGQTSISAQPTKVVDLPGGTLNHHWTKNVIASKDGSKLYVTVGSNSNVAENGMDKEEGRAAIWEVDAATGNHRIFASGLRNPNGMDWEPKTGKLWTAVNERDEIGSDLVPDYVTSVQDGAFYGWPYSYYGQHVDERVKPQNPALVAKAIAPDYAVGPHTASLGLVFADGKTLAAPFNEGLFIGQHGSWNRKPHSGYKVVFVPFSGGKPNGAPVDVLTGFLNKDEKAMGRPVGVVNDQRGGLLVADDVGNKIWRVTSAKAAQ
>NZ_LT985192.1|WP_002554602.1|4418110_4418722_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MNESPERDERHLARMLRKKAVMDERIASSPNECGLLLVLTGNGKGKSSSAFGMLARAMGHDMQCGVVQFIKGRNSTGEEMFFRRFPEQVRYHVMGEGFTWETQDRQRDIAAAEAAWAVSREMLRDPAIGLVVLDELNIALKHGYLDLEQVLSDLQARPPMQHVLVTGRGAKPELIDLADTVSDIGVVKHAFQAGIRAQKGIEL
>NZ_LT985192.1|WP_060402873.1|4416789_4418085_-|cobyrinate-a,c-diamide-synthase
MRAPRDCPAVLIAAPASGQGKTTVTAALARLHRNQGRKVRVFKCGPDFLDPMILERASGAPVYQLDMWMVGADESRRLLWEAADEADLILIEGVMGLFDGTPSSADLARHFGVPVLGVIDGTAMAQTFGALALGLARYQPDLPFAGVLANRVGTVRHAQLLENSLTEGLRWYGALSREVGFELPSRHLGLVQASELNDLDVRLDMAAAALASTCEVALPPAVTFTAPEPVQVEPLLSGVRIAIARDEAFAFLYGASLDLLRNMGAELSFFSPIHDRELPDADSLYLPGGYPELHHVALAENLTMQASIRAHHIAGKPILAECGGMLYLLEALSDVEGVRAELVGLLSGEAVMQKRLAALALQAVELPEGTLHGHTYHHSLTSTELQPIARGVSPNGGRGAEAVYRLGRLTASYVHFYFPSCPQAIAALFKP
>NZ_LT985192.1|WP_005782617.1|4416142_4416793_-|5,6-dimethylbenzimidazole-synthase
MTEQAFSPEERAAVYRAIAERRDMRHFVGGTVAPELLARLLEAAHQAPSVGLMQPWRFIRISDPALRGKMQAQVEEERIRTAQALGERTDEFMKLKVEGINDCAEVLVAALMEGREQHIFGRRTLPEMDMASLSCAIQNLWLASRAEGLGMGWVSLFDPEALAELLGMPDGAKPLAIICLGPVKEFYPAPMLVMEGWAQARPLHELLYENQWGVNQ
>NZ_LT985192.1|WP_057421516.1|4415237_4416146_-|cobalamin-biosynthesis-protein
MSVALLSVAGVALDALLGEPKRWHPLVAFGNFANRVEQRFNSGGRGWRSHGVTAWVITVVPLTLLATLLSWLPGVGWLFEILALYGALGMRSLGEHVQPVAQALRSDDLVEARQRVGYLVSRQTSELDATEVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDLLNYLPARLVALTYALLGKTRLALRCWRTQAPAWDSPNAGPVMAAGAGALGVELGGAAIYHGELHQRPQLGEGAPADADSIDRGWQLVQRGVWLWLLVICVVAEFYA
>NZ_LT985192.1|WP_060402872.1|4414240_4415245_-|threonine-phosphate-decarboxylase
MLEHGGRLRAAAQHYGIELADWLDLSTGIAPWSWPIPEIPTRAWARLPEIDDGLESAACRYYGVPRLLPVSGSQAAIQALPRVRSGGRVGVLSPCYAEHAHAWRKNGFVVREVSEQEVEYFLDTLDVLVVVNPNNPTGLHLSAERLLEWHARLAERGGWLVVDEAFMDNTPGLSLAAETWRTGLIVLRSFGKFFGLAGVRLGFVMAEPVLLRMLAQEIGPWSVSGPTRIIGQVCLNDQEGHARQRQRSEHARERLVALLDQYGLSPQGGCALFQWRVTPEAQTLYEFCARHGVLLRLFNGGTPESSSLRFGLPRDEADWLRLHTVLLEYRKEYP
>NZ_LT985192.1|WP_044320849.1|4412783_4414244_-|cobyric-acid-synthase
MTTLMVQGTTSDAGKSTLVTALCRWLTRQGVKVVPFKPQNMALNSAVTADGGEIGRAQAVQAQACFLEPHTDMNPVLLKPNSDTGAQVIIHGRAVTTMNAVAYHGYKEIAMQAVLESHRRLGESYPVIMVEGAGSPAEINLRANDIANMGFAEAVDCPVLLIADINRGGVFAHLVGTLELLSPSEQARVKGFIINRFRGDIALLQPGLDWLEARTGKPVVGVLPYVMDLHLEAEDGLDQRQTDKVEQVLNVVVPVLPRISNHTDFDPLRLHPQVNLQFVGPGQDIPPADLIILPGSKSVRSDLNYLRNSGWDTAIERHLRYGGKLMGICGGLQMLGEQVHDPLGLEGAAGSSAGFGLMAMSTVLEAEKQLRNVRGRLTLEDAEVSGYEIHAGVTTGPALEQAAVQLDDGRCDGAQSVDGQVLGTYLHGLFESPAACSALLRWAGLANVQSVDYHALRERDIERLADLVEKHLDGPLLRELCGLEAN
>NZ_LT985192.1|WP_002554596.1|4412261_4412783_-|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MLQLILGGARSGKSRLAEKLAADSTLKVTYIATSQPLDGEMNQRVASHRARRPEHWGLVEEPIELARVLRENAAPDCCLLVDCLTLWLTNLLMLDNPERLLQERESLLDSLAGLLGEIIFVSNETGLGVVPLGELTRRYVDEAGLLHQALAERCQRVVLTVAGLPLTLKGTAL
>NZ_LT985192.1|WP_002554595.1|4411212_4412265_-|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MSNSWWLKPAQAIDVPMREAALARQQQLTKPAGSLAQLERLAVQLASLQGRERPAADKLWIAIFAGDHGVVAEGVSAYPQEVTGQMLHNFVNGGAAISVLARQLSAQLDVVDLGTVAPLDLPGVRHLRIGAGTANFAHGPAMSAEQGLAALQAGRDSVLRAKAVGTELFIGGEMGIGNTTAASAVACSVLECAAPLLVGPGTGLNAEGIEHKTRVIERALALHAEQAGDPLHSLFCLGGFEIAALTGAYLACAQEGIVALVDGFICSVAALVAVRLNPSCRNWLLFGHRGAEPGHRHLLETLQAEPLLDLGLRLGEGSGAALAVPLVRLACELHNGMATFAEAAVADRPA
>NZ_LT985192.1|WP_002554594.1|4410643_4411216_-|alpha-ribazole-phosphatase-family-protein
MTLRLDLLRHGETELGGGLRGSLDDALTELGWQQMRAAVANGGPWERIVSSPLQRCARFSEELAQRLSLPMQLEPGLQELHFGDWEGHSPAQLMETDAEGLGLFWADPYAFTPPNGEPVIDFSTRVLNAVARLHKAYADERVLLVSHGGVMRLLLAQARGLPREQLLQVVVGHGALLSIQVAADGVITEV
>NZ_LT985192.1|WP_004657225.1|4421125_4421671_-|C40-family-peptidase
MSIALRLIVISVAALLGACASAPPPPKAPRVVQRPVVTAPPQILSPAAEDVLFRALGLVGTPYRWGGNTPDSGFDCSGLIGYVYRDAAGISLPRSTREMIVMGAPNIRREQLQSGDLVFFATSGGSQVSHAGIYVGEGRFVHAPASGGTVKLDSLDKPYWQKAYLNAKRVIQPSSLAQIRP
>NZ_LT985192.1|WP_111780168.1|4421761_4422484_-|C40-family-peptidase
MQVVRFAPLVPLALVTFLFGCSANMPVAQQEQAQPVARYQSAANAQSAARRADAAALQDEIATEDELAHFADNKSYQLPVLADSILERGKSLIGTRYKFGGTSTSSGFDCSGFIGYLFREEAGMSLPRSTREMINVDAPLVSRKNLQPGDVLFFSTRGRGRVSHAAIYAGNQQFIHSSSRRSGGVRIDSLDDAYWSKTFIEAKRPLAMAPGTVAVRSTPDATQTTAMTSTTVKTAPKRRK
>NZ_LT985192.1|WP_002554606.1|4422559_4423324_-|NAD-dependent-deacylase
MVDQALLMQTAAALRHAQRILVITGAGLSADSGLPTYRGVGGLYNGKTDDGLPIEMALSGPMLRRDPELCWKYIAELGRACLGGEPNIAHYAIAQLQRIKPECWVLTQNVDGYHRAAGSPPERLIEIHGQLSPLFCQSCGAEDPQLSEHLQRPLPPLCSACSGVMRPPVVLFQEMLPERALETLYEQLAKGYDAVLSIGTTASFPYIHEPVIRTRVSGGFTAEINPQPTDHSAQMDVFLQCRAAHVMAELISHI
>NZ_LT985192.1|WP_002554607.1|4423317_4424022_-|DnaA-regulatory-inactivator-Hda
MKPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHLLQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETLGW
>NZ_LT985192.1|WP_002554608.1|4424239_4425313_-|AI-2E-family-transporter
MTDTRRWFWIGGLALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSRTLSVVAVFGLFTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKAAISEHMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLPRQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSEIYAGAEDPEL
>NZ_LT985192.1|WP_060402874.1|4425351_4426455_-|DUF2066-domain-containing-protein
MRFSRVLLVGCLSLISLPSLAETVSNLYQVREPVTGQSPDERTRATQAAVETLVLRLTGDAKAAQGSAIAALRKDPQQIISQYGYEAGPPETLLVDFDPATTDRALRDAGLSIWGSNRPSILGWWLNDSVEGSNLVGDGQAAAEPLRRAAQHRGLPLRLPLADLSEQGVGNAKTLEGTDAAPLKEASERYGADAILAVHAKEDAGQWQGKWRLWLGDQREQGTATGATSEALADAVLLSVSQRLAPRFVAKPGASTGLLVQVRGMTLERYAQLLQLLDPFGVRLSSVDGDKVVFEVSGSTDQLRSLLSLAKLQEVPAAEAAAAATPPAAPVDATAPVAPANGAAAVPAPAPAAMIVPASAPQLYFRW
>NZ_LT985192.1|WP_060402875.1|4426796_4427855_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSKQPSLSYKDAGVDIDAGEALVERIKSVAKRTKRPEVMGGLGGFGALCEIPAGYKQPVLVSGTDGVGTKLRLALNLNKHDTIGIDLVAMCVNDLVVCGAEPLFFLDYYATGKLNVDTAAQVVTGIGAGCELAGCSLVGGETAEMPGMYEGEDYDLAGFCVGVVEKAEIIDGSKVAAGDALLALPSSGPHSNGYSLIRKIIEVAGAYIESIQLDGKPLTELLMAPTRIYVKPLLKLIKETGAVKAMAHITGGGLLDNIPRVLPQGAQAVVDVASWQRPAVFDWLQQQGNVAENEMHRVLNCGVGMVICVAQEHVEAALKVLREAGEQPWVIGQIATAAEGAAQVELKNLKAH
>NZ_LT985192.1|WP_002554611.1|4427854_4428505_+|phosphoribosylglycinamide-formyltransferase
MPAICDVVVLLSGTGGNLQAMIDSFKDGSSPVRIRAVISNRADAFGLQRARDAGIEACVLDHTAYEGREAFDAALIELIDTFQPQLVVLAGFMRILSAGFVRHFHGRLLNIHPSLLPRYKGLHTHKRALEAGDTEHGCSVHFVTEELDGGPLVVQAVISVQLHDTPTTLAQRVHVQEHRIYPLAIRWFAEGRLSLGEQGALLDSQLLPASGHLIRH
>NZ_LT985192.1|WP_002554612.1|4428513_4429227_+|DUF3108-domain-containing-protein
MRRALLFAFALLALPAVQAAELQPFSASYTADWKQLPMSGTAERSLEAGANGTWTLSFKASMMIASLTEVSTLKVDKETLLPQTYSFERSGLGKSKKVDLAFDWNTKFVTGTDRGDAIKLPLNRGILDKSTYQLALQHDIADGKKSMSYQVVDGDEVDTYDFRVLGSEKVTTKTGQVDAIKVERVRDPTQSKRTTVLWFAKDWDYLLVRLQQVETDGKEYNIVLLDGTVNGKAVKGS
>NZ_LT985192.1|WP_002554613.1|4429709_4429889_+|hypothetical-protein
MTVRVTERDDAHLSHEAVADGIQIWDVHQQDQLVGMFHVESDALRYKEELEALESQGNH

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Crispr_ID: NZ_LT985192_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_6

4460361-4460449

Orphan

Consensus_repeat	Method
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_6

>merge|NZ_LT985192|6|4460361-4460449|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGGCCAACAAGCCGAATGCTGACTTGTAGACTCCTGTAGGAGCGGACTTGTCCGCGAAGAGG

>NZ_LT985192|6|6|4460361-4460449|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CCAACAAGCCGAATGCTGACTTGTAGACT
CCTGTAGGAGCGGACTTGTCCGCGAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_060402886.1\|4452858_4453593_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_LT985192.1\|WP_044319333.1\|4453593_4454340_-\|siderophore-iron-reductase-FhuF	unknown	unknown	gnl\|CDD\|274875
NZ_LT985192.1\|WP_060402884.1\|4448266_4449613_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|182754
NZ_LT985192.1\|WP_060402893.1\|4465736_4466021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_057411796.1\|4457375_4460288_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|235966
NZ_LT985192.1\|WP_060402885.1\|4450314_4450665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_002554639.1\|4460612_4461860_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
NZ_LT985192.1\|WP_054070840.1\|4450837_4451626_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_LT985192.1\|WP_060402894.1\|4466036_4467380_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_002554629.1\|4449609_4450287_-\|response-regulator	unknown	unknown	gnl\|CDD\|182755
NZ_LT985192.1\|WP_060402905.1\|4464905_4465154_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_060402892.1\|4465355_4465700_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_060402889.1\|4462026_4463148_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366960
NZ_LT985192.1\|WP_044321986.1\|4451705_4452239_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_LT985192.1\|WP_060402896.1\|4471879_4473445_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_LT985192.1\|WP_060402890.1\|4463565_4464141_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NZ_LT985192.1\|WP_060402891.1\|4464193_4464484_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_060402895.1\|4467946_4470952_-\|autotransporter-serine-protease	unknown	unknown	gnl\|CDD\|226973
NZ_LT985192.1\|WP_060402888.1\|4454297_4455908_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236724
NZ_LT985192.1\|WP_060402883.1\|4446454_4447807_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|234968

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_060402886.1\|4452858_4453593_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	3.8763e-62
NZ_LT985192.1\|WP_044319333.1\|4453593_4454340_-\|siderophore-iron-reductase-FhuF	gnl\|CDD\|274875	TIGR03951, Fe_III_red_FhuF, siderophore-iron reductase FhuF. Members of this protein family, including FhuF of E. coli, are siderophore ferric iron reductases that appear to play a role in iron removal from certain hydroxamate-type siderophores, including coprogen, ferrichrome, ferrioxamine B, and aerobactin. Genes occur in regularly in siderophore transport and/or biosynthesis clusters. The C-terminus includes four Cys residues in a C-C-10(X)-C-X-X-C motif that binds a 2Fe-2S cluster. Family TIGR03950 is similar, but especially in the C-terminal region, but likely acts on a different panel of siderophores. [Energy metabolism, Electron transport, Transport and binding proteins, Cations and iron carrying compounds].	1.20019e-65
NZ_LT985192.1\|WP_060402884.1\|4448266_4449613_-\|histidine-kinase	gnl\|CDD\|182754	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ.	1.58481e-80
NZ_LT985192.1\|WP_057411796.1\|4457375_4460288_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_LT985192.1\|WP_002554639.1\|4460612_4461860_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NZ_LT985192.1\|WP_054070840.1\|4450837_4451626_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.52639e-58
NZ_LT985192.1\|WP_002554629.1\|4449609_4450287_-\|response-regulator	gnl\|CDD\|182755	PRK10816, PRK10816, two-component system response regulator PhoP.	2.72873e-81
NZ_LT985192.1\|WP_060402889.1\|4462026_4463148_+\|HNH-endonuclease	gnl\|CDD\|366960	pfam02182, SAD_SRA, SAD/SRA domain. The domain goes by several names including SAD, SRA and YDG. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix.The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA.	7.66005e-06
NZ_LT985192.1\|WP_044321986.1\|4451705_4452239_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00166468
NZ_LT985192.1\|WP_060402896.1\|4471879_4473445_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.99334e-64
NZ_LT985192.1\|WP_060402890.1\|4463565_4464141_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.50029e-24
NZ_LT985192.1\|WP_060402895.1\|4467946_4470952_-\|autotransporter-serine-protease	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	1.59386e-95
NZ_LT985192.1\|WP_060402888.1\|4454297_4455908_-\|HAMP-domain-containing-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	5.42387e-85
NZ_LT985192.1\|WP_060402883.1\|4446454_4447807_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0

>NZ_LT985192.1|WP_057411796.1|4457375_4460288_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MQTDTTRENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRAPEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGTLPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ
>NZ_LT985192.1|WP_060402888.1|4454297_4455908_-|HAMP-domain-containing-protein
MNSIFLRIYGGMLGVLVLVALLGVFALHVLNQSRGEQYRERLAHGTFTVMADNLVPLNDIERRRALAIWERLLGIPLSLQSIEQAGLDSGARGRLARGQAVVEQIGPHAARVYRQLNDKEPLLLSGEVQQITEQLARATIYLLIDELVRFPVDEQPARLQALRIDKGFGFDLHLLALDQADLDDDQRRRIYEGDTVMALGKGGDSIRVLAGIVDTNWVLEIGPLYQMNPYPLHWLLVIALMGLCFIGLVVYLLVRRLERRVLELEAAATQIAQGSLQTRVPTEGSDSVGRVAAAFNSMAEHLQRSLMIQRELVRAVSHELRTPVARLRFGLEMVSDPTTPEARRKYMRGMDSDIQDLDKLVDEMLTYARLEQGAPTLNFQRVDLDALIDQVIAELAPLRADVRVSRGECLRAEECEAAWVEGEPRYLHRAVQNLVSNALRHAESEVRISYRLEAQQCRIDVDDDGLGVPEQAWEQIFTPFMRIDDSRTRASGGHGLGLSIVRRIIHWHEGRALIGHSVSLGGACFSLSWPRTQVPR
>NZ_LT985192.1|WP_044319333.1|4453593_4454340_-|siderophore-iron-reductase-FhuF
MLQPVLAAHAGAALSLPSFVGPFARFGRTLLTADDARPVVTLPDLLQPERLDQLLLAVYGPQLMPGQLPVLVSQWAKFYFMQLIPPVLVASLVHHWHWPLQVEQVALALDERGVPNGVRLAEEGRVWRGMSVDPFQRFAGLLDDNLQPFIASLSAYGGLPAAVLWSSAGDYLEGCLAQLATCSDVSLAAGLALLSEKKRPDGRANPLFQAVRYVPQAQGGEPRRQRRVCCLSHRVEWVGRCEHCPLSG
>NZ_LT985192.1|WP_060402886.1|4452858_4453593_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MPPMTRLSDLPICCPELIRHWPLPQALPGAVLVSGHFDPLKLVDGDFQRCELQMPASIQRSVAKRQTEFLAGRLCAREAMRQLDGRLHVPAVGEDRAPAWPADVCGSITHSTGWAAAVVAHKRQWRGLGLDTENLLSHERASRLAGEILTAAELADMAAGAQDQVALRVTLTFSIKEALFKSLYPIVQKRFYFEDAQLLEWSADGSARLRLLIDLSSEWHAGKELDGQFSVLGDHLLSLVAVEG
>NZ_LT985192.1|WP_044321986.1|4451705_4452239_-|transposase
MGRSRYTITEPEKPHFLTCTVVEWLPLFTRPALVDVLLNAWRYQQLHQGLQLYGYVILENHLHFVAQAPELDKCVNSFKSFTARQIIHVLEKANAQSALQRLRFVKPMHKTDRVYQVWQEGAHAELVWNEAVMRQKLDYIHHNPVKRGYVDVGEHWRYSSARDYEGQRGLIDIQRWY
>NZ_LT985192.1|WP_054070840.1|4450837_4451626_+|dienelactone-hydrolase-family-protein
MRVWIAMIMMGLTGLAQAAIKTEQIDYKSADGTKLVGYYAYDDAVKGPRPGVLVVHEWWGLNDYAKRRARDLAALGYSAMAIDMYGEGKNTEHPKDAMAFMQAALKDSDAADKRFDAGLEQLKQQPQTDPKKIAAIGYCFGGKIVLDAARRGEPLLGVVSFHGALVTNTPAKPGIKVPMLVEHGAKDSMVTAENVAAFKKEMDDAKADYKFVSIDGAKHGFTNPDADRLSHGDHGGPDIGYDKAADQSSWSDMQVFFKKIFG
>NZ_LT985192.1|WP_060402885.1|4450314_4450665_-|hypothetical-protein
MLNLNKFFLALAFLGGSAAAQAGDGRLDVARIEFGKTSERLDDANSWGHALGEQAHTNVSVGTLYSPPVYGTLTGTHNGVPVSREILLGSYDVTQQVPVSARLLSTDATMSFHSLS
>NZ_LT985192.1|WP_002554629.1|4449609_4450287_-|response-regulator
MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGLDLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNERCT
>NZ_LT985192.1|WP_060402884.1|4448266_4449613_-|histidine-kinase
MIRSLRLRLMLGAATLAVIFMLLMLPALQGAFSLALRGAIEQRLASDVTTMISAARVEDGHLLMPSVLPGEQFNLPGSRLLGYIYNRQGQMVWRSLSTEGENIDYRPQYDGQGSEFTKIKEINGDEYFVYDVEIRLLGGRNAAFSIVAVQPLRGYQETIDGLRRKLYLGFGAALAVLLGLLWMGLTWGLRALRGLSQELDQVEAGVRDSLSEEHPSELLRLTDSLNRLLRSEREQRIRYRDSLDDLAHSLKTPLAVLQGVSENIAKRPEDVEQAWVLQSQIERMSQQIGYQLQRASLRKSGLVRHHVMLRPVVESLCNTLYKVYRDKQVKATLDLPEHCQVHMEEGALLEMLGNLLENAYRLCLSEVRVSFTRSADGDELCIEDDGPGVPQSQRARILERGERLDRQNPGQGIGLAVVKDIIESYGAQLTLGDSPLGGAAFRIHFLAQ
>NZ_LT985192.1|WP_060402883.1|4446454_4447807_-|dicarboxylate/amino-acid:cation-symporter
MTTRQPIYKSLYFQVIVAIVIGILIGHFYPDTGKALKPLGDGFIKLIKMVIAPIIFCTVVSGIAGMQNMKSVGKTGGYALLYFEIVSTIALLIGLIVVNVVQPGAGMNIDVSTLDASKIAAYVTAGQDQSIIGFILNVIPNTIVGAFANGDILQVLMFSVIFGFALHRLGSYGKPVLDFIDRFAHVMFNIINMIMKLAPIGAFGAMAFTIGAYGVSSLVQLGQLMICFYITCALFVVLVLGAICRAHGFSVFKLIRYIREELLIVLGTSSSESALPRMLIKMERLGAKKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNTHMDITHQITLLLVLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNAVATVVVAKWVGELDTDKLQSELTSGGSAILETRPEDDLGVAEGPTPAGAVNTTKTV
>NZ_LT985192.1|WP_002554639.1|4460612_4461860_+|ribonucleotide-diphosphate-reductase-subunit-beta
MLSWDEFDKEDGEVVAKATNAGHANEANMDRLDSAGGLAAQEARAVTAADSAALIRAKKALDALDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD
>NZ_LT985192.1|WP_060402889.1|4462026_4463148_+|HNH-endonuclease
MAIPAVEQKAIEKALKKFDKELRKQPDWATWESNRSHKFAIRVEGQLYPAKKIVSLATGIAVYDFTGGRPTNGYLRARGFEVVDLRKSPKLEFVKGEIYDRRSEIHAPFGGSFQSGIAPSDKAPAVFLFTGSSGEQYGYRDKIDASGVYSYTGEGQIGDMTLTRGNLAIQKHAETGRSLHLFKALDERKGQQYVGEFSCADISWTDGPDREGTTRKALIFHLIPVIDLLTNEESPREILQEEDQQEIDIDILRNLAYEATVALPSKGKMTAIRTVYARSQAVKDYVLRRANGECESCEKSAPFVTKKEQPYLEPHHINRLSDDGLDHPQFIAALCPSCHKEIHYGKMGEQKNEILKEIISSKESPWLANKNKH
>NZ_LT985192.1|WP_060402890.1|4463565_4464141_+|Bro-N-domain-containing-protein
MLSNLFQASARQPREVCAGFTPTPFHRHNRQLLALLLENQPWFSARDLGRMIGWPLNERTLRKLDADQHRMITLDLHGEAQSELMVSESGAYAMMVHHYHAENRGLRQWLTNEVVPALRDGQVLFDDCTPHLSMLQWPGLSVSMLHWHSEPWIRLRDMPMVLAHPQMQVDARPHRLAKSWWRAVLPVSRLG
>NZ_LT985192.1|WP_060402891.1|4464193_4464484_-|hypothetical-protein
MKKTGTGFVAILALLCAFSANAREAQVTDASIVKAIIQESIDSYPGNCPCPYNSARNGSQCGKRSAYSRKSGYAPICYKEDVTKEMISDYRRRLKD
>NZ_LT985192.1|WP_060402905.1|4464905_4465154_-|hypothetical-protein
MLLEPVLAISIKNVAKMAAGSQPYVLRIDDGFVHEILAEVVSVEKSLVIVGQLTIELDDVLPGDIDLGDMISFSCERLDVIS
>NZ_LT985192.1|WP_060402892.1|4465355_4465700_-|hypothetical-protein
MKRSCQALFIVPIGASKVLGDYGWEFNSLERLPESIGEYLVRYLGLKFEEEYAGIKKYTNGQINMSIFLDGNNEVESIYFQAFESFLAGIYKACQNEAVFSGAEIFIPEEMKSF
>NZ_LT985192.1|WP_060402893.1|4465736_4466021_-|hypothetical-protein
MKYENVRHMLKTVFCSDFNLAEDVAIGIYVNSLNSSGKTDEMRYELAECLRDQNVSWRDMLVNDEYEVLDFETEQEAKDYIKRILWQPLDKKTN
>NZ_LT985192.1|WP_060402894.1|4466036_4467380_-|hypothetical-protein
MFFFHMLPSWDDIRRKLDRDIAPYRGGHFRTHRNEPVPSPALIIRRFNCVRSAFDRAESEACRILGQRFVDLDISSIIKDLIDVVAQMAMIVVGSAFVGGVAGASAGALFFGVGAAPGGLMGATLGAQASTFILGILGLESIAESVIDGFPRIIHYYTRGISTAWQGPREQGWSSFMGDDPVAQNSAVQEIAQGHVEVVILLLGAIVQYITRGRGNARALANEMRASAKGERLGQWMLEHEDELKKRPDLQGPEPRRGALEPQEALSTNRSKTADAAKPDAIDQKTVSSKIDAKQLDLVTGHPNAHSLSVHGGKVSDGDLMLRAKSAIKPNGDVGPSVPPLSSAFHSDELLIFADQTIRNGGALERAIARQPGQDVIRVTAQDAGDIGVDLGRGFKRVLPTGNILKNLETNGAPEKLENLRSIEGLYQYNPSKKNWETITIFPAPAP
>NZ_LT985192.1|WP_060402895.1|4467946_4470952_-|autotransporter-serine-protease
MRKSKRLGAVRYSFKPLASGALCALSFTFGCSAYADYVEQGKPDDAASWRSAEFQSDWGLGRIQADQAYAAGITGAGVKIGALDSGFDPSHPEATPSRYHAVTATGTYVDGSPFSITGAINPNNDTHGTHVTGTMGAARDGVGVHGVAYNAQIYVGNTNQNDSFLFGPSPDPQYFKAVYGALADAGVRAINNSWGSQPSDVTYATEAGVRAAYAQHYNRGTWLDEAANVSRKGVINVFSAGNSGYANASVRASLPYFEPDLEGHWLAVSGLDSSNGQRYNQCGLSKYWCITMPGRLINGTVPGGGYGIKSGTSMSAPHATGALALVMERFPYLNNEQALQVLLTTATQLDGSVTQAPTNSVGWGVANLERAMRGPGQLLGTFDANLGAGVSDVWSNDISDQALLQRQAEDTAEQATWQQTLISKGWQNGVASTASQQDQADYATGTARAAAAAQRQYQGSLVKSGAGRLILQGANTYRGDTLVNGGLLSVNGSLVSAVQVNAGGTLGGNGQIGGLTARSGGIVAPGNSIGTLQVNGDVTLQPGSTYAVELSPTASDRIVATGSATVSGANMTLAQENATPVALSSAPIQSVVGRQYNVLQAANGVNGQFGSVTSNYAFLGGRLDYAATGVALNVEQTSAFSSVAQTPNQSALATAAEQLGAGNAVYENLLLTQSAAAARDSFQQLSGEIYPAIGSVLINDSRQIRDAVGERLGTSVFGTDGNTAAQDNVWIKALGAWGKTDSRDDTAGYTTSIGGLLAGVDGNLADDTRLGVVAGYSDSSLNMGSGMHSRASVDSYHLGAYLGHEIGALRLTLGGAHSWHRIDAQRDVQVGGAAGKEKTKHDAQSTQVFTEAAYRIHLQPATLEPFANLAYVHLNTDSFTEKGDAAALSAGSDNRDAVLSTLGVRALKTIAISDRQKIDLSGSLGWQHNLSNTDSEQHLAFASAGNSFNVQSVSMDRDAAVVGARASLALGKDARINLDYNGLLGARDKTHGVGLSLDWQF
>NZ_LT985192.1|WP_060402896.1|4471879_4473445_-|methyl-accepting-chemotaxis-protein
MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVALSGFTREELVGQPHNLVRHPDMPASVFAHMWETIKQGKPWMGVVKNRSKQGDYYWVSAYVTAVYENGRIVGYESVRSLPTRDQVRRAEALYARLRAGKSAVSATSSAAYHLVHQLPMILCALALAVGVYLLDDLPSIIMIPIVMVVLGGFLEMRQRRSIRNTLEEHPKAFTSSLVALTYSDNRGPQAQLDLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMANSVTDIGNAVGELASATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQIITSLRDGADRAVQTANKGEQISQESVASVEAVQKALDGISQSVTRITGMSQQMASASEEQSHVAENISQQITRIAQLCDESASQAQQGSQISGELEEMAQYLHSLAERFSR

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Crispr_ID: NZ_LT985192_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_7

4754308-4754447

Orphan

Consensus_repeat	Method
GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_7

>merge|NZ_LT985192|7|4754308-4754447|CRISPRCasFinder
GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAGTTGAGGGTTCTTATTGGACTGGCCGCTGTGGTGAGTAAAGACGTTTAGTGATGCGGGTATAGTTTAGTGGTAGAACGAAAGCTTCCCAAGCTTTAG

>NZ_LT985192|7|7|4754308-4754447|CRISPRCasFinder
GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAG	TTGAGGGTTCTTATTGGACTGGCCGCTGTGGTGAGTAAAGACGTTTAGTGAT
GCGGGTATAGTTTAGTGGTAGAACGAAAGCTTCCCAAGCTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_060404231.1\|4741426_4742152_+\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|163257
NZ_LT985192.1\|WP_060404236.1\|4759759_4761556_-\|trypsin-like-peptidase-domain-containing-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|239569
NZ_LT985192.1\|WP_002554933.1\|4753277_4754159_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_LT985192.1\|WP_060404238.1\|4754901_4755873_-\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NZ_LT985192.1\|WP_060404232.1\|4742890_4746673_+\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264
NZ_LT985192.1\|WP_002554923.1\|4736801_4737494_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_LT985192.1\|WP_060403329.1\|4769046_4770063_+\|alpha-xenorhabdolysin-family-binary-toxin-subunit-B	unknown	unknown	unknown
NZ_LT985192.1\|WP_057401534.1\|4740647_4741430_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NZ_LT985192.1\|WP_060404229.1\|4737686_4738178_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_LT985192.1\|WP_054071037.1\|4752287_4752980_+\|16S-rRNA-pseudouridine(516)-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_LT985192.1\|WP_004664032.1\|4770120_4770738_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|226285
NZ_LT985192.1\|WP_060403330.1\|4766312_4767533_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379330
NZ_LT985192.1\|WP_005735135.1\|4742163_4742781_+\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|132465
NZ_LT985192.1\|WP_019331803.1\|4762987_4763791_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_LT985192.1\|WP_173929299.1\|4763783_4765283_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_LT985192.1\|WP_005735140.1\|4752027_4752252_+\|cysteine-rich-CWC-family-protein	unknown	unknown	gnl\|CDD\|379586
NZ_LT985192.1\|WP_060404234.1\|4757155_4758706_+\|TIGR04141-family-sporadically-distributed-protein	unknown	unknown	gnl\|CDD\|275009
NZ_LT985192.1\|WP_060404230.1\|4739835_4740651_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_LT985192.1\|WP_060404237.1\|4761865_4762732_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985192.1\|WP_054071039.1\|4767829_4769050_+\|alpha-xenorhabdolysin-family-binary-toxin-subunit-A	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_060404231.1\|4741426_4742152_+\|urea-carboxylase-associated-family-protein	gnl\|CDD\|163257	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	2.8409e-123
NZ_LT985192.1\|WP_060404236.1\|4759759_4761556_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|239569	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	2.42452e-70
NZ_LT985192.1\|WP_002554933.1\|4753277_4754159_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17441e-15
NZ_LT985192.1\|WP_060404238.1\|4754901_4755873_-\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	2.4727e-14
NZ_LT985192.1\|WP_060404232.1\|4742890_4746673_+\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_LT985192.1\|WP_002554923.1\|4736801_4737494_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	1.46883e-156
NZ_LT985192.1\|WP_057401534.1\|4740647_4741430_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.54375e-100
NZ_LT985192.1\|WP_060404229.1\|4737686_4738178_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	1.14394e-05
NZ_LT985192.1\|WP_054071037.1\|4752287_4752980_+\|16S-rRNA-pseudouridine(516)-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	5.72554e-88
NZ_LT985192.1\|WP_004664032.1\|4770120_4770738_-\|TPM-domain-containing-protein	gnl\|CDD\|226285	COG3762, COG3762, Predicted membrane protein [Function unknown].	1.32958e-31
NZ_LT985192.1\|WP_060403330.1\|4766312_4767533_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379330	pfam13679, Methyltransf_32, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.20755e-32
NZ_LT985192.1\|WP_005735135.1\|4742163_4742781_+\|urea-carboxylase-associated-family-protein	gnl\|CDD\|132465	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	2.32191e-133
NZ_LT985192.1\|WP_019331803.1\|4762987_4763791_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	3.61367e-76
NZ_LT985192.1\|WP_173929299.1\|4763783_4765283_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.69382e-14
NZ_LT985192.1\|WP_005735140.1\|4752027_4752252_+\|cysteine-rich-CWC-family-protein	gnl\|CDD\|379586	pfam14375, Cys_rich_CWC, Cysteine-rich CWC. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 74 and 102 amino acids in length. It contains eight conserved cysteines, including a conserved CWC sequence motif.	3.25878e-12
NZ_LT985192.1\|WP_060404234.1\|4757155_4758706_+\|TIGR04141-family-sporadically-distributed-protein	gnl\|CDD\|275009	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family. This model describes a sporadically distributed conserved hypothetical protein in which complete members average over 500 amino acids in length, although matching sequences frequently are truncated or broken into tandem ORFs. Regular co-clustering with known markers of mobility (integrases, transposases, phage proteins, restriction enzymes, etc.) suggests this family also is part of the mobilome. The function is unknown.	0
NZ_LT985192.1\|WP_060404230.1\|4739835_4740651_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	3.23004e-43

>NZ_LT985192.1|WP_002554933.1|4753277_4754159_+|alpha/beta-hydrolase
MSPEKAVLDIQGQFRVYTEFYHTDAAAKTIILVNGSLATTASFAQTVRNLYPTFNVVLYDQPYSGRSKPHNVHGAPLTREEEGQLLLELIDHFNAEHVLSFSWGGAATLVALAHQPRRIESAVISSFSPVINGPMREYLDKGLDYLGAHSRYDMGHLINNTIGKHLPALFKRVNYRHVSSLDGHEYDQMHHHFSQVLELDPDNYLTAGQRIKVPVLFINGAWDEYTSANDAAQFSRYLQNCSFNTIEATGHFLDMEHKAACRDSKQALMNFLQPAQASSSVYNRVQGHHAFAF
>NZ_LT985192.1|WP_054071037.1|4752287_4752980_+|16S-rRNA-pseudouridine(516)-synthase
MRLDRFLSNLPSLNRKSVRLALASGRVQVDGQTTSDPHHEVREFSRVALDGEILQAGKAARYFMLHKPEGCVSATVDTQHPTVLDLLDEPDRHELHIAGRLDFNTTGLMLITNDGQWSRRLTQPQNKMPKVYYVETEQPIDERYAATFAAGMYFSFENITTQPAQLTLLGPRSARLTIVEGRYHQVKRMFGHFNNKVLRLHRENIGALALDPALAPGGYRALHAAEISLF
>NZ_LT985192.1|WP_005735140.1|4752027_4752252_+|cysteine-rich-CWC-family-protein
MNDTRLCPLCGFSNQCSLADPRTADQACWCFSESIDPALLEALPAAIRDKACLCPRCAGIQEAASGQSADRINK
>NZ_LT985192.1|WP_060404232.1|4742890_4746673_+|urea-carboxylase
MFDKLLIANRGAIACRILRTLRTLQVKGVAVYSEADAASLHLMQADEAHSLGEGGAAGTYLAVDKILAIAKASGARAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTELLDSLESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTEQVWGVDLVSWMVQLAAGDLPPLEQLQAGLKPSGHAIQARLYAEDPGRDFQPCPGLLTAVNFPPADGHALRIDTWVEAGCEIPPYFDPMIAKLISWAQTREQASTGLIDALNETRLYGVETNRDYLRQIIADTPFASGQPWTRCLEGLVYHADTFEVLSGGTQTSVQDYPGRLGYWAVGVPPSGPMDSRALRQGNGLLGNAEGCAALEITMSGPLLRFNTDAVIAVTGAQIPITLDGEPRAMNTALLVCAGSTLALGTIAGAGVRSYLCVRGGLDVPDYLGSKSTFTLGQFGGHGGRALRAGDVLHIALLVDRSAGQRVADDALEALPDIRRIRIIYGPHAAPEYFTEAYIETFFATDWEVHFNSSRTGVRLIGPKPEWVRADGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPDGPSLGGFVCPVTIIEADLWQLGQLKAGDRVRFTPVSVEACHAERCRSELVREGYIPDAENTSTVPTSSRASSLPQGTADSRGSELVREGYIPDAENTSTVPPSSRTSPLPQGIANSRGSEAVRIEDLPSPVILDIGQDDKRLVARLSGDTHLLLEIGAPELDLVLRLRGHALMLALEAKQLGGVIDLTPGIRSLQVHYRPEQLPLRQLLDIVAGEWDAVCAAKDLQVASRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLPNLDEVQRTVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYMCVYGMEGPGGYQFVGRTLQMWNRYRNVAAFEGKPWLLRFFDQIRFYPVSADELLRIRRDFPLGRFDLNIEHSTLNMADYQAFLTREAEGITAFRAQQQSAFNAERERWIANGQADFQSDEGVAPNTEELPLQTGQQGVDSHIAGNLWQVQVQPGERVEAGDVLVILESMKMEIPLLAPVAGVVQEVRVQPGSAVRAGQRVVVLAAD
>NZ_LT985192.1|WP_005735135.1|4742163_4742781_+|urea-carboxylase-associated-family-protein
MNSHTHICCDATIPAGEPFLAEVKAGQTVRILDLQGNQAVDTLFFSLANPRERYDVQRTLRRQNSVYLTTGSVLFSNLGQPMLTIVDDTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRACLHDGRLTKADIGPNINFFMNVPVTAEGGLTFEDGISAPGKYVELRAEMDVIVLISNCPQLNNPCNGYNPTPAQLLIRD
>NZ_LT985192.1|WP_060404231.1|4741426_4742152_+|urea-carboxylase-associated-family-protein
MTDSTTLYPVFAEEMLPGGGHRSFILKRGELLRLTDLHGNANVSLTLLNAHEKTERLNLPDSLKCQHTARLSNGHCLYSDMGRVLAAIVTDTCGWSDSIGGVLNAQEVAEKYGQGRYQELRNGFFRNGVDNLLVELGKWGLGLSDLLMTLNLFSRIDVDEAGILHFAANNSKAGDYIELYAPMDTLVVLTALQHPMDPNPQYAPQPLRLSWMKADASVAEHCRTSRPENERGFINTDRLFA
>NZ_LT985192.1|WP_057401534.1|4740647_4741430_+|ABC-transporter-ATP-binding-protein
MSFICVRNVWQQYDDQVVLEGLNLDVAEGEFCTLVGASGCGKSTFLRLLLGQETPSRGLITLDGKALRNEPDASRGVVFQRYSVFPHLSVLDNVALGLELPRSAWLGRLFGQAKSEAREHAAQLLGKVGLGHALDKYPTQLSGGMQQRLAIAQALIMKPRVLLLDEPFGALDPGIRKDMHHLLLDLWRETKLTVFMVTHDLSEGFNLGTRLLVFDKVRHDPHEPGAYGARITYDIPLNSERRAERAAIDSLLNVSEEPVQ
>NZ_LT985192.1|WP_060404230.1|4739835_4740651_+|ABC-transporter-permease
MRLINRHPDRAGRLILVILPFALLLFAYFMGSATRLAENPTDKLLPSAVQMADAVKRMAFTADTRSGDYLLWQDTASSLHRLAIGLGISALLGLCLGIAAGILPLFGAQLSPLLTVMSMVPPLAILPILFIVFGLGELSKVMLIVIGITPILARDLEQRAREIPVELLIKAQTLGASTWTLILRVILPQLLPRLLIALRLVLGSAWLFLIAAEAIASTDGLGYRIFLVRRYLAMDVILPYVVWITLLAWLMDWGLKALTRRAFPWYEGART
>NZ_LT985192.1|WP_060404229.1|4737686_4738178_-|hypothetical-protein
MYRRLLLITLLTLFLAGCYAGPGYYESDVYTQPTTVVGGAYAYDNGYRSTYYQEQRIYVAPQPRYYTQPRYYAPAPRYYAPPPVPRYYQPGRPPGYGWRNDGFRGNGGFGRNDGFRGNGGFGRNDGFRGDRGNRGWEDHGGRGGRDGRDHGRGGRGDGRGGHR
>NZ_LT985192.1|WP_002554923.1|4736801_4737494_-|uracil-DNA-glycosylase
MTSDDRIKLEPSWKEALRDEFEQPYMAQLREFLRQEHAAGKEIYPPGPLIFNALNSTPLNNVKVVILGQDPYHGPNQAHGLCFSVQPGVPTPPSLVNIYKELKRDLNIDIPNHGCLQSWADQGVLLLNTTLTVERANAASHAGKGWQHFTDRIIQVVSEHQPHLVFLLWGAHAQSKQKLVDATKHLVLTSVHPSPLSAYKGFLGNGHFGRANKYLEQNGIEPIDWRLPVL
>NZ_LT985192.1|WP_060404238.1|4754901_4755873_-|toll/interleukin-1-receptor-domain-containing-protein
MPNVFFSYCHADEALRDQLEKQLSMLKRQGVIETWHDRRISAGQEINPAIDDHINTDEIILLLVSPDFIASDYCYDIEMTRAMERHQAKQATVIPVILRACDWHHAPFGKLMGTPQDGKPVTLWPDRDEAFLQVATEVRKAAEKWRNSKPVSPLSSVLTASSASVAAAPHAITGPRSSNLRLAKSFTQLDKDQFQFETFEYIARYFESSLAELQSRNSGYQGTFRRVDANRFSVTIYKDGRDVAKASVFVGGQMGAGIYYSQGDGFGGGSFNEALHVESDDQTLYWRTLGMASFHSQRDQKLSQEGAAEALWEIVITPLQRGH
>NZ_LT985192.1|WP_060404234.1|4757155_4758706_+|TIGR04141-family-sporadically-distributed-protein
MKITINVFMLKEGRAVQDALNDEVNLQPIAFELNGVDCLFYHQKNPSHPKWTQLFKDIEEVVALDLTGRSLKALLVMAVRGRVFCFTFGHARYLIDSLAIERYFGLRTALSLTDPLLIKSVEKSNIDRTPLRSKSQSSKHLSIAEFDFKFDSEILKSLTGIVESDQDDGEYVSGSDSLALHSDVKLEEFPEIASRLLTAYEDERCKEKYPWMDYIVPVRDSSLNGDLDGLLVEAINAEQFDRVRAASPELLGNDISGFGYVKHSARSHHGPALAFDLDLRQALLAKHILGAVTHPLLLSERIYLYGAEEQRIAMWSLYNCLEAEVEHDGKVYLLSEGDWYQIDRDYTDQVNRFFEAATRCELQFPRYNADNEGPYLRRIADNANFYLLDQKLVRLNNASSPFEFCDLLTPDHHIIHVKKYSSSSVLSHLFSQAYVSAEALINAPDVTAQVNTHLSELGPFQFVFDPATLPRNKIVFAIMQPNDELHMPFFSKVNFRQFSQRLGAMGYQVEVCRIAN
>NZ_LT985192.1|WP_060404236.1|4759759_4761556_-|trypsin-like-peptidase-domain-containing-protein
MDIDSIFKDLFGPGFQSLDGFCRLLEVDQNKLLNFLYNRKGSHYVSFSILKKNKTHRSIKAPKRVMKKIQHALLPHLEKFYSPKSSSHGFVKGRNVKTNAQIHSRKRYVFNIDLKDFFESIHFGRVRNLFMAHPFNAPHNVATVIAQICCSYGKLAQGAPTSPLISNMICRKLDSQLQALAKTSKCHFTRYADDITFSFTSTEKHLPKDIVEVSEDGRAIPGRELEEIIRAAGFAINSEKTRLQHRTQRQMVTGLVVNEMPNVTREFIRLTSSMINALKSYGPELAEAKYLEILKAKNHTLQPRQLLRTNDGNGDFFIKVVKGRLNYIQMIRGRGDKIYRRLAYEFTVALGKENPEFKKSPEEILGNSIFVVNNIISESQGAAFLLEGVGIVTNEHVVSGVSKTIARHSISFHRAGDTKEYSAELILSDKKADLAVFRPNEEFRNIPVLKKSDKTIVRAMDAVLSIGFPKYRDGTAHYIARGHTTQRRRQVDLDLWLVDFMLLEGNSGGPMFNDSMEVIGVTARGAKNNIDAALYGFIPLESLNSFTSRSDFILLNRLHDYIGNGSLSLLPQTLGKGVLSITYQAMLRKQHLLPLTEN
>NZ_LT985192.1|WP_060404237.1|4761865_4762732_-|hypothetical-protein
MSSQSTALEELRAVIGEQSKLLTLILFTISQGPVLRQGQWLSCSLDTEQARATAAVAMGAGQSLGTVVKNSGERGLAVRDLYPIARSVVEGFINAAFFATQPVHVAKRALAHIPYAAWKHSNRVIGSGDFMMTLGDDPTPKATAARLFPDFAGRGQDSWCSLDAPSRINRIGQVVQASGGAFLGAYGGIYSVSSEIIHGSVYGMSYFMSAYTGQARTTEAFQRGTEGQMIDILSAVGHAASGFISAYANIHQYGPLVLEEHELFRRLFKAATGDTWVGGDQPADIPQL
>NZ_LT985192.1|WP_019331803.1|4762987_4763791_-|ATP-binding-protein
MRDLMAELKELRLHGMAHAWEELAAQGEASTASSKWLLEHLLQQEQADRAVRSVNHQMNMAKLPMHRDLAGFEFSASSADARLVKELSSLDFTETAQNVVFIGGPGTGKTHLASALAVAGITVHNKRVRFFSTVDLVNLLEREKHDGKTGRIAQGLLRTDLVILDELGYLPFSQSGGALLFHLLSKLYEHTSVIITTNLSFSEWSSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSTLADQTKIKTRERKRKEADVVEDDEPF
>NZ_LT985192.1|WP_173929299.1|4763783_4765283_-|IS21-family-transposase
MEMMGKIRRMYFRDKLSLHQIAKRTGLSRNTIRKWIRAPETKQPVYQRRAAFNKLSPFHATLEQALKADSLRAKHNRRTAKALFEQIKAEGYDGGYSQLTAFIRAWRGEQGKSLRAFVPLTFALGEAFQFDWSEEGLLIGGLFRRIQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKTAVDKVSKGKGRTVNARFSVMCAHYLFDPDFCNVASGWEKGIVEKNVQDSRRRIWLDAQDCLFHTFDELNVWLGQRCRTLWSELPHPQYKGLTVADVLELERVEMMPMPSAFDGYVERTVRVSSTCLISVARNRYSVPCERVGQWVSSRLYPSRVVVVADETTIASHERLFDRDQVSYDWQHYIPLIERKPGALRNGAPFADLPKPLRLLKRGLRRHANGDRVMTQVLAAVPISGLDSVLVAVEIVLESGSLSADHILNVLARLTSTAPPPSVETNLQLKVAPAANTARYDQLRAKDEESRNA
>NZ_LT985192.1|WP_060403330.1|4766312_4767533_-|SAM-dependent-methyltransferase
MSVITPTSSSTAPDHRAQFLGLLDTSLSQNSLIKLVLAKYVGSEAELQRVIIKPLTVKEQPCLTFVYRYKTRDITKNFPLAEAVGAIASLIPESFKNAHLLSLTDEVQLEFSKKGKSTLFKSKAQQEREAPSAGHDREKKRYLELSRPFLADLGVTNRQHELIPAMSRKWKQINKFIEVFSHALSSSPLKLDQPIKVADFGSGKGYLTFAIHDYLCNTLQAQGQVTGVELRKDMVTLCNNAAAGLEHPGLTFQHGDVRTVAPSALDVMIALHACDIATDYAIHMGIRSGASIIMCSPCCHKQIRLQIQSPALLKPMLQYGLHMGQQAEMVTDSLRALLLEACGYETKVFEFISLEHTNKNKMILAVKRAEPVNPDLLIARIQELKTFYGISEQCLETLLRADGFIG
>NZ_LT985192.1|WP_054071039.1|4767829_4769050_+|alpha-xenorhabdolysin-family-binary-toxin-subunit-A
MLSQAALLENEDIARVTLKPVEYLSVILDDEKSGGRSAALILTKEDILSLKRYERHALNIPTSLNRVEQQLGFTRSYIPGLEPKDMLVTYQAINNHGKSWLSIEDGIKRSGFAIELFATQFSRQGEQIINYIEKMDFARQLDLTVADLNIEEVRNTAPVPLGETDQRVCITLAEFLKKTASQIKNHQHAAQTLADHIDTFSTVLSVQLIPGINDKVKLANCSDLDQQIQDLEKDIEQLTTEIEQKNNEYKTALYNIAWGLFGGAIGVAITGGIFGAQAEEIRKEKNRMVASKNQKVQKLKEKSPLSAAVRSLQILFEDMNIRMMDAHQSATHLKDLWTMLAAYIDRSASELSAITTDQALMIFAMQFQGVVTPWREIRGMANQLLKIFDSALDQFQREQQSGKRGQ
>NZ_LT985192.1|WP_060403329.1|4769046_4770063_+|alpha-xenorhabdolysin-family-binary-toxin-subunit-B
MIMSTETLSEPLVLTPPDNKVMTAARQNILAQVSTSKLNFLPAMKEKMLPLQDALISADKVYRQELANITVQLNTVNLKPIDQKQQLIEADATLSDKQKQQAINLLNGQRIRQVSNITAAVRRSAAAIAEHSDNVAQINLTLESNRLLETLQQQIDSITQRSATLESAMALIAEDRRLLDATISTLEKYNIADLFKELLPTQEELQLIITPSPELALVSVGIARLEKLLDKISSALTYLDLTRERDRLRSRYNALLDDSRMSTQETKVIKEKLDELTGLAGVAQSKALWVQEAKKVYQSLYHFLDQITSPGDASALISQHVEQLKTYIKSFYDVKRIV
>NZ_LT985192.1|WP_004664032.1|4770120_4770738_-|TPM-domain-containing-protein
MALLNRDEQRQVAEAIDRVEQRTDAELVTVLAARADDYAYMPLIWAGLIGLLLPGTVNYCVQWLSADELMLAQMSTFIVVALVCRVSNVSALLVPLSVRRWRAGNLARRQFLEQNLHKTHDGTGILVFVSEAERYVEILVDHGIASRLHDDTWKAMVDVFTQQVRDGQTLQGFLGCIHACGELLADHVPVTHGRNELPNRLVVLG

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Crispr_ID: NZ_LT985192_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985192_8

4954483-4954591

Orphan

Consensus_repeat	Method
CGCGCACCTATCGTTCTTCACGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT985192_8

>merge|NZ_LT985192|8|4954483-4954591|CRISPRCasFinder
CGCGCACCTATCGTTCTTCACGCTCCAGCGTGGGGGCGCCGTTCTGGAAGCTTTGCGTCCACTGTTGGGTACGCGGTGCAACACGCGCACCTATCGTTCCTCACGCTCC

>NZ_LT985192|8|8|4954483-4954591|CRISPRCasFinder
CGCGCACCTATCGTTCTTCACGCTCC	AGCGTGGGGGCGCCGTTCTGGAAGCTTTGCGTCCACTGTTGGGTACGCGGTGCAACA
CGCGCACCTATCGTTCCTCACGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985192.1\|WP_080164776.1\|4948641_4949757_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_LT985192.1\|WP_002555119.1\|4964002_4964356_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_LT985192.1\|WP_005733040.1\|4964644_4966750_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_LT985192.1\|WP_172456487.1\|4963489_4963864_+\|DUF2845-domain-containing-protein	unknown	unknown	gnl\|CDD\|371338
NZ_LT985192.1\|WP_003364106.1\|4948157_4948649_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_LT985192.1\|WP_060403286.1\|4942036_4945852_-\|TIGR02099-family-protein	unknown	unknown	gnl\|CDD\|273971
NZ_LT985192.1\|WP_044323130.1\|4955189_4956221_+\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|273039
NZ_LT985192.1\|WP_060403285.1\|4960551_4963530_+\|DUF748-domain-containing-protein	unknown	unknown	gnl\|CDD\|377502
NZ_LT985192.1\|WP_004666201.1\|4951485_4952937_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_LT985192.1\|WP_057456139.1\|4959411_4960428_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_LT985192.1\|WP_057456138.1\|4957679_4959254_-\|alkaline-phosphatase-D-family-protein	unknown	unknown	gnl\|CDD\|226070
NZ_LT985192.1\|WP_060403287.1\|4941142_4941988_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143596
NZ_LT985192.1\|WP_002555105.1\|4947487_4948090_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|234584
NZ_LT985192.1\|WP_002555114.1\|4956632_4957574_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_LT985192.1\|WP_044320432.1\|4952947_4954393_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_LT985192.1\|WP_005733046.1\|4956252_4956636_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|131478
NZ_LT985192.1\|WP_044323131.1\|4951183_4951471_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_LT985192.1\|WP_002555108.1\|4949940_4950978_-\|rod-shape-determining-protein-MreB	unknown	unknown	gnl\|CDD\|237562
NZ_LT985192.1\|WP_004666200.1\|4946033_4947491_-\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
NZ_LT985192.1\|WP_111780176.1\|4954743_4955112_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868

Protein	Function_ID	Function_description	E-value
NZ_LT985192.1\|WP_080164776.1\|4948641_4949757_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	7.2844e-103
NZ_LT985192.1\|WP_002555119.1\|4964002_4964356_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	3.84632e-14
NZ_LT985192.1\|WP_005733040.1\|4964644_4966750_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_LT985192.1\|WP_172456487.1\|4963489_4963864_+\|DUF2845-domain-containing-protein	gnl\|CDD\|371338	pfam11006, DUF2845, Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.	5.74806e-26
NZ_LT985192.1\|WP_003364106.1\|4948157_4948649_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.84226e-26
NZ_LT985192.1\|WP_060403286.1\|4942036_4945852_-\|TIGR02099-family-protein	gnl\|CDD\|273971	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane. [Hypothetical proteins, Conserved].	0
NZ_LT985192.1\|WP_044323130.1\|4955189_4956221_+\|calcium/sodium-antiporter	gnl\|CDD\|273039	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein. This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General].	1.21171e-71
NZ_LT985192.1\|WP_060403285.1\|4960551_4963530_+\|DUF748-domain-containing-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	2.8001e-41
NZ_LT985192.1\|WP_004666201.1\|4951485_4952937_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_LT985192.1\|WP_057456139.1\|4959411_4960428_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	3.66763e-58
NZ_LT985192.1\|WP_057456138.1\|4957679_4959254_-\|alkaline-phosphatase-D-family-protein	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
NZ_LT985192.1\|WP_060403287.1\|4941142_4941988_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143596	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10.	4.17662e-141
NZ_LT985192.1\|WP_002555105.1\|4947487_4948090_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|234584	PRK00032, PRK00032, septum formation inhibitor Maf.	5.15298e-127
NZ_LT985192.1\|WP_002555114.1\|4956632_4957574_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.81523e-44
NZ_LT985192.1\|WP_044320432.1\|4952947_4954393_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_LT985192.1\|WP_005733046.1\|4956252_4956636_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	4.12288e-47
NZ_LT985192.1\|WP_044323131.1\|4951183_4951471_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	3.39473e-39
NZ_LT985192.1\|WP_002555108.1\|4949940_4950978_-\|rod-shape-determining-protein-MreB	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_LT985192.1\|WP_004666200.1\|4946033_4947491_-\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_LT985192.1\|WP_111780176.1\|4954743_4955112_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	8.88342e-51

>NZ_LT985192.1|WP_044320432.1|4952947_4954393_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MQWEVVIGLEIHTQLSTQSKIFSGSATTFGSEPNTQASIVDLGMPGVLPVLNKEAVRMAVKFGLAVDAEIGQHNVFARKNYFYPDLPKGYQISQMELPIVGKGHLDITLEDGTVKRIGITRAHLEEDAGKSLHEDFQGMTGIDLNRAGTPLLEIVSEPDMRSAKEAVAYVKAIHAIVRYLGICDGNMAEGSLRCDCNVSIRPKGQVEFGTRCEIKNVNSFRFIEKAINSEIQRQIDLIEDGGKVIQQTRLYDPNTNETRAMRSKEEANDYRYFPDPDLLPVIIEDSFLEETRATLPELPPQKRERFQSQFGLSTYDASVLASSREQADYFEQVVSISGDAKLAANWVMVELGSLLNKQGLEIEQSPVSAEQLGGMLKRITDNTISGKIAKMVFEAMANGEGSADEVIDKRGLKQVTDSGAIESMLDEMLAANAEQVEQYRAADEAKRGKMFGFFVGQAMKASKGKANPQQVNELLKAKLEG
>NZ_LT985192.1|WP_004666201.1|4951485_4952937_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MHQMTLAEIARGLAEKKFSSEELTRVLLSRIATLDPQLNSFISLTEDLAITQAQAADARRAAGENGPLLGAPLAHKDLFCTQGIRTSCGSRMLDNFKAPYDATVVSKLASAGTVTLGKTNMDEFAMGSANESSHYGAVKNPWNLQCVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQDSTSIDEPVPDYSASLNTSLKGLRIGVPKEYFSAGLDPRIAQLVHESVKELEKLGAVVKEVSLPNLQHAIPAYYVIAPAEASSNLSRFDGVRFGYRCEDPKDLTDLYKRSRAEGFGPEVQRRIMVGAYALSAGYYDAYYLQAQKIRRLIKNDFMSAFAEVDVILGPTTPNPAWKIGAKTNDPIAEYLEDFYTITANLAGLPGLSMPAGFVDGLPVGVQLLAPYFQEGRLLNVAHQYQQVTDWHTRAPEGF
>NZ_LT985192.1|WP_044323131.1|4951183_4951471_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MALERSDVEKIAHLARLGLNDADIPRTTEALNSILGLVDQMQAVDTTGIEPLAHPLEASQRLREDAVTERNRRDTYQAIAPAVQDGLYLVPKVIE
>NZ_LT985192.1|WP_002555108.1|4949940_4950978_-|rod-shape-determining-protein-MreB
MFKKLRGMFSSDLSIDLGTANTLIYVRERGIVLNEPSVVAIRTHGNQKSVVAVGTEAKRMLGRTPGNIAAIRPMKDGVIADFSVCEKMLQYFINKVHENSFLQPSPRVLICVPCKSTQVERRAIRESALGAGAREVFLIEEPMAAAIGAGLPVEEARGSMVVDIGGGTTEIALISLNGVVYAESVRVGGDRFDEAIITYVRRNYGSLIGESTAERIKQEIGTAYPGGEVREVDVRGRNLAEGVPRAFTLNSNEVLEALQESLATIVQAVKSALEQSPPELASDIAERGLVLTGGGALLRDLDKLLAQETGLPVIVAEDPLTCVARGGGRALEMMDKHTMDLLSSE
>NZ_LT985192.1|WP_080164776.1|4948641_4949757_-|rod-shape-determining-protein-MreC
MKPLFAKGPSLGVRLLVLAVLSVALMVVDARFTILKPVRSQMSMVLMQSYWIVDLPQRLYQGVASQFGSRTELIAENEKLKTEALLLQGRLQKLAALTEQNVRLRELLNSSALVNEKVEVAELIGMDPNPFTHRIIINKGERDGVVLGQPVLDARGLMGQVVELMPYTSRVLLLTDTTHSIPVQVNRNGLRAIASGTGNPERLELRHVADTADIKEGDLLVSSGLGQRFPAGYPVATVKEVIHDSGQPFAIVRAVPTAALNRSRYLLLVFSDGRSPEERAADAAQAQESIDKGIEPSVMATLPPPTPAFPMWPQATVPVFPGSTATHKPAAQSTTPAPAAAPVTPARPAARPAASQPPASRPSTAREPIDG
>NZ_LT985192.1|WP_003364106.1|4948157_4948649_-|rod-shape-determining-protein-MreD
MVSHVSGRNGWVVWLTFAIGLLLSVSPLPQFMEIFRPLWLALLLTFWVLALPHKYGMTTAWILGLMEDVLYGTLLGQNALILSLITFLVMSLQQRLRMFPMWQQCLVLLVVFGLAQLAQLWLSALTGNRQPTLALVLPALVSALLWPWISYGLRGLRKRLKIN
>NZ_LT985192.1|WP_002555105.1|4947487_4948090_-|septum-formation-inhibitor-Maf
MPSLYLASGSPRRRELLTQIGVSFTVLNAQIDETPFDHETPAAYVERLALGKAQAGLSVLAAEQQACVMGADTAVVLDGRILGKPADEADALAMLTALSGREHEVMTAVALSDRHRSETRIVTSRVRFRPIQPHEAQAYWASGEPADKAGGYAIQGLAAIFVEGLQGSYSGVVGLPLCETAELLGHFGIPCWQCLEGDES
>NZ_LT985192.1|WP_004666200.1|4946033_4947491_-|ribonuclease-G
MSEEILINITPMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFIDIGLDRAAFIHASEISMREGPAVESIASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVGISLKIEDEAERERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPPTVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQRVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDVVLL
>NZ_LT985192.1|WP_060403286.1|4942036_4945852_-|TIGR02099-family-protein
MGRLPRLVATLTRWSLSLCALVLVLAALYVSLGRQLTPLVAEYRVDVETRASSALGMPLSIGSLEGSWSRFAPVFLAHDVMVGEGSSAVRLDRVRVVPDLWESLLARQVRIAHLEVDGLQFMLRQDKEGNWSVQGLPVRNDSPFDPGQVLEQMQMVSHLSLLDSQVTVQPFDAAPLTLTYVNLSLATGSYHQRLDARLTLPDGQPFALNVRSRIQASQWKDGEADFYASLPQSDWARWLPKSLTREWTLSKLQAGGELWMSWGKGTVQSATARLNAPHVKGVYAGRKPSTVDNLALNAWFARTDTGFDLNLDSLAMSLGDKRWESRLQLTQTAATPDSEELWHVQADRLDLTPLTPLIDSLAPLPEKAMAVVDGLKVTGGLRNVLLDYRPQAAGDKRLSFAANLDKVGFNAYRGAPAAGNVTGAISGDLGQGELRLDTNDFMLHLDPIFAKPWRYQKANARLTWKLDDQAFTLIAPYIKVLGDEGKIAADFLIRIHLSHEQEDYMDLRVGMVDGDGRYTSKYLPTALSPELDHWLRTAVVSGAVKQGFFQYQGSLNKSSPDTARVISLFFDVSNATLAFQPGWPSLTGVDGKVYVENSGVRVKASKGQLLDTKVSNVLVNIPHVPAGQDSHLLVDGSFSGNLIDGLKILQQAPIGTASTFAGWTGEGPLDGKLKLDIPLAKGVEPKVVVDFSTDNARLKLADPVLELTRLKGDFRFDSAKGLSGKGIKAQAFDRPVTAEIAAEGKPGDNVTRIVANGQITVKRLTDWLSVTQPLPVSGDLPYQLQLTLDSKDSPLVINSTLKGVAIDLPAPFGKTAEEERPSEFRMTLQGAERRLGAAYNDQANFAFAAPNGKFADGRGELYLGRGGAIVPDAKGLRIRGELSELDVAPWQELAGRYTGNDPGGSAKQLLNSVDLQIGKLTAMGTTLDNVRVQLQRNAAAWALSLDSALAKGTAVLPDAKSAPIGINMLYVRLPASDPNAAVVENAPDPLADIDPHNIPALDVKIAQLFQGDQLLGAWSLKTRPTATGMRMSDLSLGLKGILLEGDGAWEGIPGSSSSSFKGRVAGKNLADVLKAWNFAPTVTSESFEMNVDGRWPGSPAWVGLKRYSGSLDATLNRGQFVEVEGGAQALRVFGLLNFNSIGRRLRLDFSDLLGKGLSYDRVKGLLVASDGVYVTRNPITLTGPSSNLELNGTLDMVRDRVDAKLLVTLPVTNNLPIAALIVGAPAIGGALFLVDKLLGDRVARFASVQYKVEGPWKEPKITFDKPFEKPQ
>NZ_LT985192.1|WP_060403287.1|4941142_4941988_-|carbon-nitrogen-hydrolase-family-protein
MSFAVIQMVSQSDVQANLVSARRLLEQAAEGGARLAVLPENFVAMGRRDVADIGRAEAHGHGPILPWLKLAARDLKLWIVAGTLPLPPDERPDGKVTACSLLIDEHGEQVARYDKLHLFDVDVADNRGRYRESDDYAHGNNVVVADTPVGRVGLTVCYDLRFPELYTALREAGAELITAPSAFTAVTGAAHWDILIRARAIETQCYVLAAAQGGVHPGPRETYGHAAIVDPWGRVLAEQAQGEAVLVARRDSEEQASIRARMPVSSHRRFFSQDAMRPASE
>NZ_LT985192.1|WP_111780176.1|4954743_4955112_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MRRLIFACSLLTLLAGCANHIIDPHGYDETGTAAYYGARHHGNRTASGEPFNQNALTAAHRQLPFGTRVKVTNLDNDRSVVVRINARGPHTRGRLIDVSREAAEQLGMLRSGTAPVRVQALD
>NZ_LT985192.1|WP_044323130.1|4955189_4956221_+|calcium/sodium-antiporter
MFSGLLLLLIGAELSVRAAVHLAAIFKVRPLLIGMTVVAMGTSAPQMAVSLQAAFADNTDIAVGSVIGGNIFNVLVILGLCALIIPLRVARQVLHIDIPLMIGACLLAIGLSWNGEFSKFDGALLLAGLLVCLIVIIRQGGHTPRHGHAETTEKPRTFTRILMLAAGLLLLTAGGHLLVDASVVIAIHLGLSERIVGLTIIAIGTSLPALMTSLIAAFRGERDIAVGNVIGSNLFNLLGVLGVTALFAPVPLTISPNAMVFDLPIMLGVSLLCVPLFYSGYRIDRMEGLFLLSLYLTYGLHILAISTGMALAERLETKMLTLVLPVLGVVVAWGTIRAWRRQH
>NZ_LT985192.1|WP_005733046.1|4956252_4956636_+|carboxymuconolactone-decarboxylase-family-protein
MTDKTISEGEQIRRQVMGDVYVDRALGNATEFSQPLQDFVNEHAWGSVWSREGLPLKTRSLITLATLTALKCPQELKGHVRGALNNGCTVEEIREALLHCAVYAGVPAAIDAFRAAQEVIDSYVKPD
>NZ_LT985192.1|WP_002555114.1|4956632_4957574_-|AEC-family-transporter
MLAIFLQTLNITAPVFAMLFLGVLLKRIGAINDGFIVAASGLVFNVTMPALLFLGIIHADLRAALQPGLLIFFSVATLLSFAFAWGWAIWRCPQEERGVYVQGAFRGNNGVIGLALAASMYGPYGISLGAILAALVIVFYNTLSTIVLAVYSPVIKSDPWSVFKSVLANPLIISVIIASPFAYFSIGLPRWLETSGSYLAQMTLPLALICIGGTLSLASLRKSGSLAISASVMKMITLPLLCTLAAWLVGFRGAELGILFLYFASPTAAASYIMARTANGNYELAAAIIVITTLAAAVTTNVGIFILQWGGWI
>NZ_LT985192.1|WP_057456138.1|4957679_4959254_-|alkaline-phosphatase-D-family-protein
MSQFDLKRRRVIQAVGAGLLLPGLAPAVIASVQDRPKMVDGVQSGDVLGDKAMVWSRSDRPSRMVVEWDTRSMFTQPRRVVSALADPRTDFTARVELSGLPVDQAIFYRVSFEDAQSGVASEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDVGGMRIYEAMRLRLPDFFIHSGDTIYADGPVPEQITTEGGRIWRNLTTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEVPQIWQWDDHEVTNNWSPSKQLDGRYKVKDIQLLSSRARQAYLEYAPLRLQQADNGGRIYRKIPYGPMLDVFVLDMRSYRDGNDANLAEKPGPTTAFLGREQLDWLKRELNASRAQWKVIAADMPIGLGVPDGEVSPGVARWEAIANGNDGPALGRELEVAELLAYLRAQKIRDCVWLTADVHYCAAHHYQPDRAVFQDFDPFWEFVAGPLNAGSFGPNVLDKTFGPELVFQKAPPAQNTSPFAGYQFFGEVNIDGQTGEMSVALRDLDGVSVFERKLQPTVEISRIV
>NZ_LT985192.1|WP_057456139.1|4959411_4960428_+|class-I-SAM-dependent-rRNA-methyltransferase
MSSLNQALSVALDNRQSLLGELHQQGTDCYRLFHGSQEGASGLTIDRYGPQLLVQSFHTRLDRDALLALHEQVNARLGLETLLVYNDRSQGNSRVDRQDTVYKADEAALADHIGHEWGLNYRVRGRHAGQDPLLFLDLRNTRGWVKQHSAGKSVLNLFAYTCGVGLSAAAGGASEVCNLDFAEGNLAVGRENGALNPQLPPMQFIQSDYFPAIRQLAGLPIAARRSQQLPSYMKLQQRQYDLVLLDPPAWAKSAFGTVDLLRDYQSLLKPALLTTADGGVLICCNNLAKVSMQDWREQVLRCATKAGRPVRDCQEMLPAKDFPSLDNQPPLKTLILQL
>NZ_LT985192.1|WP_060403285.1|4960551_4963530_+|DUF748-domain-containing-protein
MSRGLKRTLGSLLTVIVLYSLLGFFILPGVALRIANQQLANYATVPAKLERLEFNPYTLELTLWGLNIGTPGKEQVAFEKLYANLQIDSLWTRALHLQRIELIKPKTELLFDKQGKLNLAQLFKLPASEPAKDEPPGKPFPLRIDEIKLADGYVHFQDMRPSQPIEFLYDTLNFELKNLSTLPEDNADMTLVAAGPDGGQIDWVGRISLIPITSEGTLKVTDSKMKLWWPYVRDALPLALEDGVLNFSTAYTLNLAKETELKLTNVSASVAPFALNTPDGRPLVRLQRLDVSETSVNLAKQLVTVGKIRSQKLETWAAREADGQLDWQKLFASQPGKPAAPQTPAVDDKAAEPAPTTDASAKASAKPATQSTPWQVLLRDVQLRNYMVHLADRVPQEPVALDVGPLNLDIQNFDSLNKSPFTLKLDTGLGKQGNLTAAGDVNLNPVSAQLNVTTRDIDLRLAQAYISPFIRLEMRSGMLGSDLAVNLKSTEPLAFSVTGKAQVNQLHTLDTLKQRDFLKWQQLQLEGLDYQHGTGLSIAKVNMDQPYARFMINEDRTTNVDDLLIPQPDDKTASQPKTARTQPKAKAKADNPLAIYVGEVNIMDGSANFADMTLTPNFATAVQQLNGRIGTIDNRKATPAPVDIQGKVDRYAPVTIKGSLNPFDPMASLDITTSFKRVELTNLTPYSGKFAGFRIRKGRLNLDLHYLITKGQLKAQNKVLVEQLQLGERVDSPDALDLPIRLAVALLKDTQGRISLELPIEGDLNNPQFSVMPIVWQTLRNLVLRAAQAPFKMLGGLVAGGSSEDLGSVSFAPGSSDLSAEAQSALDKLSVALKERPDLKLEIEGTSAASSDGPLLAQQRLEREYQYTYYKILQRRGDKVPARAGLIQVPEDEKAPMLEGIYRTRLKQQPPAEWANLGKEQRANQMRAAVLKFWSSNEVLLRELGQGRASSIKDYLVDKGKLEDARVYFVDARLGQAQPDGKVISPLHLDSE
>NZ_LT985192.1|WP_172456487.1|4963489_4963864_+|DUF2845-domain-containing-protein
MVKSSAPSTSTVNEALARTRIKLLINLTLATLAGSVATSSYATSTLRCGNQLVSTWDRAFEVQQKCGEPVSQEVLGTQETFNSNYRRSEAVRIEEWIYGPDNGMYRYLRFEGGRLVRIESKRRT
>NZ_LT985192.1|WP_002555119.1|4964002_4964356_-|BON-domain-containing-protein
MKKFAIAAATATALTLTMANAAFAQTSAQAPMVLAANTTTQEVKEDTSDTWITTKVKADLLTEKGIPGSDIKVETNKGVVSLSSMVKVTEAQKNTAVAITKKIKGVKDVSAAGLKAE
>NZ_LT985192.1|WP_005733040.1|4964644_4966750_-|polyribonucleotide-nucleotidyltransferase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

87181 : 128494

Bacillus_phage(33.33%)

transposase,integrase

attL 88741:88767|attR 128650:128676

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015062536.1\|87181_88411_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_015062535.1\|88391_88673_-	hypothetical protein	NA	NA	NA	NA
88741:88767	attL	NA	NA	NA	NA
WP_060402797.1\|89151_90474_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_057411778.1\|90740_91625_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005732795.1\|91652_92906_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_060402796.1\|92898_93711_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_002551393.1\|94214_95195_-	sulfate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-30	33.7
WP_004662918.1\|95197_96070_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA
WP_002551395.1\|96083_96905_-	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA
WP_002551396.1\|97000_98011_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002551397.1\|98161_98344_-	sulfur starvation response protein OscA	NA	NA	NA	NA
WP_060402795.1\|98540_100469_-	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	1.0e-11	31.9
WP_004660010.1\|100624_101809_+	fatty acid desaturase	NA	NA	NA	NA
WP_002551400.1\|101938_102937_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.8e-15	32.3
WP_081080307.1\|103198_104593_-	response regulator	NA	NA	NA	NA
WP_060402794.1\|104749_106030_-	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	1.4e-28	29.9
WP_010205737.1\|106209_107652_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_060402798.1\|108106_109375_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_038819968.1\|109722_110796_+\|integrase	site-specific integrase	A0A1S6L1B6	Ralstonia_phage	3.9e-61	40.6
WP_103408422.1\|111051_111369_+	hypothetical protein	NA	NA	NA	NA
WP_003417182.1\|112101_112905_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.4e-33	37.0
WP_103356851.1\|112897_114397_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_003348789.1\|114736_114988_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_135003699.1\|115356_115629_+	hypothetical protein	NA	NA	NA	NA
WP_060403123.1\|115724_116084_+	hypothetical protein	NA	NA	NA	NA
WP_143519795.1\|116208_116514_+	hypothetical protein	NA	NA	NA	NA
WP_019331341.1\|116532_116784_+	hypothetical protein	NA	NA	NA	NA
WP_024659455.1\|116978_117533_+	hypothetical protein	NA	NA	NA	NA
WP_060403125.1\|117937_120583_+	ATP-binding protein	NA	NA	NA	NA
WP_060403126.1\|120979_121333_+	hypothetical protein	NA	NA	NA	NA
WP_057427112.1\|121773_122808_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_057427112.1\|124600_125635_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_060402792.1\|126062_126716_-	Abi family protein	NA	NA	NA	NA
WP_146047469.1\|127336_128494_-\|transposase	IS91 family transposase	NA	NA	NA	NA
128650:128676	attR	NA	NA	NA	NA

DBSCAN-SWA_2

133830 : 204749

Escherichia_phage(26.67%)

transposase,integrase

attL 121659:121718|attR 197798:199286

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
121659:121718	attL	NA	NA	NA	NA
WP_060403780.1\|133830_134793_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	1.6e-08	23.3
WP_057432311.1\|135131_135380_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_057456423.1\|135392_135743_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_057456424.1\|135849_136254_-	hypothetical protein	NA	NA	NA	NA
WP_060403779.1\|136243_139066_-	RHS repeat protein	NA	NA	NA	NA
WP_057431753.1\|139062_139854_-	RHS repeat protein	NA	NA	NA	NA
WP_081083437.1\|140580_141804_-	RHS repeat protein	NA	NA	NA	NA
WP_054071526.1\|143021_143327_+	type III chaperone protein ShcF	NA	NA	NA	NA
WP_060403777.1\|143968_144631_+	hypothetical protein	NA	NA	NA	NA
WP_044295311.1\|144899_145505_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	9.2e-15	33.9
WP_060403776.1\|145598_148487_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.5e-173	35.8
WP_057425411.1\|148528_149434_-	serine hydrolase	V5R9Q0	Mycobacterium_phage	2.3e-06	24.5
WP_002556026.1\|150026_151112_-	DUF3616 domain-containing protein	NA	NA	NA	NA
WP_004666801.1\|151262_151484_+	hypothetical protein	NA	NA	NA	NA
WP_057427112.1\|152017_153052_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_057427112.1\|154952_155987_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_180275929.1\|156360_156669_+	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_003407168.1\|156743_157028_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.1e-10	41.4
WP_044322659.1\|157024_157324_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.4e-21	52.6
WP_060403106.1\|157925_158342_+	hypothetical protein	NA	NA	NA	NA
WP_060403115.1\|158737_159391_+	AAA family ATPase	E5FFJ3	Burkholderia_phage	4.6e-36	41.4
WP_003348789.1\|159479_159731_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_060403107.1\|159995_160637_+	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	1.3e-38	41.1
WP_060403108.1\|161020_163636_+	AAA family ATPase	NA	NA	NA	NA
WP_060403116.1\|164099_166130_-	hypothetical protein	NA	NA	NA	NA
WP_025992726.1\|166674_166971_+	hypothetical protein	NA	NA	NA	NA
WP_005769724.1\|166989_167610_-	recombinase family protein	NA	NA	NA	NA
WP_060403109.1\|168200_170231_-	methyl-accepting chemotaxis protein	A0A1B0VAH3	Salmonella_phage	1.4e-06	33.6
WP_060403110.1\|171209_171620_+	hypothetical protein	NA	NA	NA	NA
WP_060403111.1\|171958_173995_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.8e-42	36.9
WP_060403112.1\|174281_175808_-\|transposase	IS66-like element ISPsy43 family transposase	A0A218MNE7	uncultured_virus	1.2e-122	47.6
WP_004409766.1\|175891_176227_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_003317539.1\|176223_176556_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010431494.1\|176996_177428_-	hypothetical protein	NA	NA	NA	NA
WP_060403113.1\|178626_179052_-	DUF1493 family protein	NA	NA	NA	NA
WP_060403114.1\|179052_179484_-	hypothetical protein	NA	NA	NA	NA
WP_003318711.1\|179494_179998_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_005741073.1\|181059_181869_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
WP_002551322.1\|181865_182888_-\|transposase	IS21-like element ISPsy4 family transposase	A0A2L1IVA1	Escherichia_phage	1.7e-77	46.1
WP_060404375.1\|183624_184128_-	hypothetical protein	NA	NA	NA	NA
WP_060404374.1\|184164_186336_-	DotA/TraY family protein	NA	NA	NA	NA
WP_060404373.1\|186332_186659_-	hypothetical protein	NA	NA	NA	NA
WP_060404372.1\|187252_187915_+	hypothetical protein	NA	NA	NA	NA
WP_060404371.1\|188825_190595_+	ATP-binding protein	NA	NA	NA	NA
WP_060404370.1\|190795_192169_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_005745773.1\|193117_193309_+	hypothetical protein	NA	NA	NA	NA
WP_060403774.1\|193395_193668_-	hypothetical protein	NA	NA	NA	NA
WP_019741216.1\|193858_194434_+	hypothetical protein	NA	NA	NA	NA
WP_060403773.1\|195113_195890_-	hypothetical protein	NA	NA	NA	NA
WP_057427112.1\|196707_197742_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_057425783.1\|198799_201055_+	peptidase	NA	NA	NA	NA
197798:199286	attR	NA	NA	NA	NA
WP_104721035.1\|201334_202315_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	3.9e-92	54.9
WP_060402808.1\|202523_203141_-	type III effector	NA	NA	NA	NA
WP_060402809.1\|203153_203549_-	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_104721035.1\|203768_204749_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	3.9e-92	54.9

DBSCAN-SWA_3

2182059 : 2266294

uncultured_Caudovirales_phage(43.24%)

holin,terminase,head,integrase,plate,tRNA,tail,transposase,bacteriocin,portal,capsid

attL 2199271:2199286|attR 2273490:2273505

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103379487.1\|2182059_2183040_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.8e-92	54.9
WP_044321752.1\|2183214_2183985_+	DNA-binding transcriptional repressor DeoR	NA	NA	NA	NA
WP_060403863.1\|2183990_2185058_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_060403862.1\|2185054_2186386_-	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_054098903.1\|2186415_2187342_-	ribokinase	NA	NA	NA	NA
WP_044321749.1\|2188526_2188712_+	hypothetical protein	NA	NA	NA	NA
WP_060403861.1\|2190207_2190603_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_044323915.1\|2190580_2191033_+	hypothetical protein	NA	NA	NA	NA
WP_005734443.1\|2191150_2191549_-	hypothetical protein	NA	NA	NA	NA
WP_060403860.1\|2192266_2192833_+	cysteine hydrolase	NA	NA	NA	NA
WP_060403859.1\|2192846_2195591_-	DEAD/DEAH box helicase	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	1.2e-42	29.6
WP_060403858.1\|2195665_2196190_-	hypothetical protein	NA	NA	NA	NA
WP_060403857.1\|2196201_2199654_-	transcription-repair coupling factor	NA	NA	NA	NA
2199271:2199286	attL	NA	NA	NA	NA
WP_005734450.1\|2199844_2201308_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_060403856.1\|2201454_2202717_+	MFS transporter	NA	NA	NA	NA
WP_005734453.1\|2202801_2204094_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.9e-70	38.9
WP_161938303.1\|2204510_2205503_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_002552886.1\|2205669_2207064_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_010203821.1\|2207106_2207829_-	glycerophosphodiester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	2.7e-05	38.6
WP_002552888.1\|2207901_2208489_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_004659831.1\|2208591_2209842_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_011168252.1\|2209849_2210533_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	4.6e-39	42.1
WP_060403855.1\|2210609_2211854_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_060403854.1\|2211984_2212815_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	1.1e-37	37.2
WP_005744385.1\|2213056_2213326_-	DUF4404 family protein	NA	NA	NA	NA
WP_060403853.1\|2213429_2214038_-	hypothetical protein	NA	NA	NA	NA
WP_004659844.1\|2214237_2214939_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_060403852.1\|2215027_2215327_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_002552897.1\|2215592_2216777_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_003315067.1\|2216773_2217259_+	STAS domain-containing protein	NA	NA	NA	NA
WP_004659848.1\|2217345_2218272_-	transaldolase	A0A1D7SEQ4	Cyanophage	6.5e-12	34.4
WP_060403851.1\|2218480_2220850_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_060403850.1\|2221090_2222335_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_011168258.1\|2222469_2222913_+	ultraviolet light resistance protein RulA	A0A1L5C2A3	Pseudoalteromonas_phage	2.2e-10	33.7
WP_004659854.1\|2222991_2223231_+	hypothetical protein	NA	NA	NA	NA
WP_003417182.1\|2224545_2225349_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.4e-33	37.0
WP_103356851.1\|2225341_2226841_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_146050435.1\|2227331_2227868_+	pancortin-3	A0A2H4J137	uncultured_Caudovirales_phage	8.4e-20	37.5
WP_060403845.1\|2227870_2228995_+	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	1.0e-43	33.1
WP_099456489.1\|2229004_2229739_-	peptidase S24	Q94MM0	Bordetella_phage	8.8e-28	45.2
WP_081080412.1\|2230899_2231127_+	TraR/DksA family transcriptional regulator	A2I309	Vibrio_virus	5.8e-07	40.0
WP_011104541.1\|2233328_2233688_+	hypothetical protein	NA	NA	NA	NA
WP_060403843.1\|2234215_2234539_+\|holin	phage holin, lambda family	A0A1V0DYG4	Shewanella_phage	8.9e-09	37.8
WP_060403842.1\|2234535_2234922_+	hypothetical protein	NA	NA	NA	NA
WP_143519753.1\|2235092_2235356_-	hypothetical protein	NA	NA	NA	NA
WP_060403840.1\|2235596_2236082_+\|terminase	terminase small subunit	A0A2D1GMW4	Marinobacter_phage	5.8e-20	38.5
WP_060403839.1\|2236161_2238051_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	7.2e-167	50.9
WP_004663043.1\|2238061_2238277_+	hypothetical protein	NA	NA	NA	NA
WP_054089135.1\|2238279_2239881_+\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	1.1e-94	39.4
WP_017698648.1\|2239883_2241116_+	S49 family peptidase	A0A2H4EXF7	Aeromonas_phage	1.4e-46	41.6
WP_004663038.1\|2241129_2241480_+\|head	head decoration protein	NA	NA	NA	NA
WP_060403838.1\|2241492_2242521_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	6.9e-71	41.6
WP_060403837.1\|2242522_2242744_+	hypothetical protein	NA	NA	NA	NA
WP_060403836.1\|2242746_2243061_+	hypothetical protein	NA	NA	NA	NA
WP_020313276.1\|2243057_2243714_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	7.2e-74	65.9
WP_060403835.1\|2243706_2244219_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.2e-49	57.4
WP_057411557.1\|2244215_2244800_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	7.9e-56	59.5
WP_060403834.1\|2244843_2245122_+	hypothetical protein	NA	NA	NA	NA
WP_004407126.1\|2245125_2245452_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.6e-34	64.8
WP_020313281.1\|2245448_2246330_+\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	4.5e-103	66.4
WP_020313282.1\|2246331_2246937_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	3.4e-78	69.3
WP_060403833.1\|2246933_2248556_+\|tail	phage tail protein	A4PE45	Ralstonia_virus	4.7e-66	45.8
WP_060403832.1\|2248556_2248988_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	1.5e-27	44.7
WP_003377416.1\|2249063_2250227_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.9e-181	81.9
WP_032719689.1\|2250239_2250749_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.7e-67	73.7
WP_003377418.1\|2250795_2251068_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_060403831.1\|2251206_2253945_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	5.3e-110	41.9
WP_060403830.1\|2253954_2254800_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.6e-87	58.2
WP_060403829.1\|2254774_2254981_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.8e-22	71.6
WP_060403849.1\|2255480_2256524_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.3e-145	73.5
WP_060403828.1\|2256562_2257108_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.4e-67	70.6
WP_060403827.1\|2257311_2258106_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	5.4e-100	65.8
WP_060403826.1\|2258234_2258723_+	hypothetical protein	NA	NA	NA	NA
WP_081080415.1\|2259655_2261308_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-33	34.9
WP_060403825.1\|2261849_2263928_+	PAS domain-containing hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_060403824.1\|2264040_2265171_-\|integrase	tyrosine-type recombinase/integrase	A0A2K8I325	Pseudomonas_phage	2.1e-145	67.2
WP_060403823.1\|2265274_2266294_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
2273490:2273505	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3297995 : 3364708

Pseudomonas_phage(63.64%)

terminase,holin,head,integrase,tRNA,tail,protease,portal,capsid

attL 3353261:3353277|attR 3378273:3378289

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060404343.1\|3297995_3299495_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_044318338.1\|3299487_3299880_-	cupin domain-containing protein	NA	NA	NA	NA
WP_060404365.1\|3300214_3301180_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_060404344.1\|3301412_3301886_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_044322374.1\|3301891_3302875_-	oxidoreductase	NA	NA	NA	NA
WP_005730183.1\|3302925_3303513_-	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_002553427.1\|3303704_3304784_+	nitronate monooxygenase	NA	NA	NA	NA
WP_004667651.1\|3304885_3305653_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_054072592.1\|3305653_3306334_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_060404345.1\|3306337_3307426_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-20	32.3
WP_044323261.1\|3307513_3308584_+	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	3.3e-44	33.7
WP_002553400.1\|3310754_3311141_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_044323259.1\|3311142_3312156_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_060404366.1\|3312383_3313022_-	cysteine hydrolase	NA	NA	NA	NA
WP_031597096.1\|3313215_3313593_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_154618376.1\|3314894_3315068_-	hypothetical protein	NA	NA	NA	NA
WP_057432078.1\|3315574_3315787_+	hypothetical protein	NA	NA	NA	NA
WP_060404347.1\|3315952_3317197_-	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	3.8e-201	84.5
WP_057421970.1\|3317193_3317373_-	hypothetical protein	NA	NA	NA	NA
WP_060404348.1\|3317429_3317960_-	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	5.7e-61	79.6
WP_057421440.1\|3318516_3318885_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	5.2e-29	72.6
WP_057421439.1\|3318884_3319223_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	4.9e-18	46.4
WP_060404349.1\|3319222_3320326_-	hypothetical protein	A0A059VJZ6	Pseudomonas_phage	1.8e-157	77.5
WP_060404350.1\|3320353_3321016_-	hypothetical protein	A0A059VF40	Pseudomonas_phage	5.9e-124	97.3
WP_057434431.1\|3321012_3321381_-	hypothetical protein	A0A059VJS9	Pseudomonas_phage	1.1e-60	94.3
WP_060404351.1\|3321377_3324998_-\|tail	phage tail protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	68.2
WP_005747032.1\|3325052_3325640_-\|tail	tail assembly protein	A0A2D1GNM2	Pseudomonas_phage	1.5e-75	74.6
WP_060404352.1\|3325636_3326419_-	C40 family peptidase	A0A2D1GNP8	Pseudomonas_phage	6.7e-119	73.1
WP_060404353.1\|3326421_3327120_-\|tail	phage minor tail protein L	A0A2D1GNF3	Pseudomonas_phage	1.3e-108	81.4
WP_081080474.1\|3327275_3327530_+	hypothetical protein	NA	NA	NA	NA
WP_057432694.1\|3327613_3327871_+	hypothetical protein	NA	NA	NA	NA
WP_060404354.1\|3328368_3330939_-\|tail	phage tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	9.5e-154	45.2
WP_172456599.1\|3330994_3331672_-	hypothetical protein	NA	NA	NA	NA
WP_172456600.1\|3331728_3331875_-	hypothetical protein	Q9MCA3	Pseudomonas_phage	8.0e-10	64.6
WP_060404355.1\|3331931_3332369_-\|tail	phage tail assembly chaperone family protein, TAC	K7PJU9	Enterobacteria_phage	8.0e-37	65.0
WP_005747041.1\|3332378_3332876_-	hypothetical protein	H2BDC0	Pseudomonas_virus	4.7e-57	66.5
WP_060404356.1\|3332940_3333309_-	DUF3168 domain-containing protein	A0A1J0GUW9	Halomonas_phage	3.2e-39	62.7
WP_060404357.1\|3333308_3333794_-	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	1.6e-54	66.0
WP_057434088.1\|3333786_3334125_-\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	1.6e-29	60.0
WP_057434086.1\|3334124_3334601_-\|head,tail	phage gp6-like head-tail connector protein	Q6JIM5	Burkholderia_virus	3.1e-10	33.1
WP_060404358.1\|3334604_3335021_-	hypothetical protein	NA	NA	NA	NA
WP_060404367.1\|3335071_3336280_-\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	1.4e-131	64.0
WP_060404359.1\|3336468_3337311_-\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	3.9e-88	62.0
WP_060404360.1\|3337314_3338625_-\|portal	phage portal protein	A0A1V0E8B9	Vibrio_phage	5.4e-137	55.8
WP_099456466.1\|3338617_3338782_-	hypothetical protein	Q9MCB1	Pseudomonas_phage	4.2e-07	61.5
WP_060404361.1\|3338778_3340512_-\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	91.3
WP_010436441.1\|3340512_3340998_-\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	3.6e-78	90.1
WP_054072595.1\|3341165_3341561_-	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	3.0e-59	79.2
WP_060404368.1\|3341551_3341737_-	hypothetical protein	NA	NA	NA	NA
WP_060404362.1\|3341930_3342179_+	hypothetical protein	NA	NA	NA	NA
WP_054072597.1\|3342347_3342737_-	hypothetical protein	NA	NA	NA	NA
WP_054072598.1\|3342733_3343051_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_158662085.1\|3343350_3344142_+\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA
WP_054072599.1\|3344256_3344640_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	3.1e-32	51.6
WP_060404475.1\|3344642_3344963_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	2.8e-31	62.3
WP_057432216.1\|3344982_3346263_-\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	5.0e-220	86.4
WP_060404474.1\|3346259_3346691_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.3e-50	70.6
WP_060404473.1\|3346687_3346984_-	DUF1364 domain-containing protein	A0A2D1GNQ4	Pseudomonas_phage	3.6e-41	83.3
WP_060404472.1\|3346980_3347652_-	replication P family protein	A0A1B0YZY6	Pseudomonas_phage	1.2e-42	46.4
WP_060404471.1\|3347648_3348422_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_135004251.1\|3348858_3349338_-	hypothetical protein	NA	NA	NA	NA
WP_057432225.1\|3349485_3349707_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_060404470.1\|3349809_3350640_+	LexA family transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	2.3e-69	67.2
WP_060404469.1\|3350722_3351583_+	hypothetical protein	NA	NA	NA	NA
WP_060404468.1\|3351848_3352244_+	hypothetical protein	NA	NA	NA	NA
WP_057432390.1\|3352285_3352597_-	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	1.8e-30	67.0
WP_134931290.1\|3352689_3352935_-	hypothetical protein	NA	NA	NA	NA
WP_060404467.1\|3352988_3353390_+	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	4.1e-19	61.7
3353261:3353277	attL	NA	NA	NA	NA
WP_060404466.1\|3353854_3354193_+	hypothetical protein	NA	NA	NA	NA
WP_060404465.1\|3354192_3354780_+	hypothetical protein	NA	NA	NA	NA
WP_060404464.1\|3354776_3355046_+	hypothetical protein	NA	NA	NA	NA
WP_060404463.1\|3355058_3355880_-	TIR domain-containing protein	K7PLZ9	Enterobacterial_phage	3.2e-63	50.6
WP_054072602.1\|3355988_3356753_+	hypothetical protein	B5WZW7	Pseudomonas_phage	2.1e-40	63.6
WP_054072603.1\|3356824_3357148_+	hypothetical protein	NA	NA	NA	NA
WP_135004254.1\|3357125_3358073_-	hypothetical protein	NA	NA	NA	NA
WP_054071686.1\|3359055_3359637_+	hypothetical protein	NA	NA	NA	NA
WP_054071688.1\|3360095_3360878_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.2e-14	30.1
WP_060404461.1\|3360945_3361527_+	hypothetical protein	I6NP82	Burkholderia_phage	2.2e-18	36.5
WP_054071691.1\|3362379_3362697_+	hypothetical protein	A0A059VA44	Pseudomonas_phage	7.5e-53	86.1
WP_054071692.1\|3362836_3363049_-	hypothetical protein	NA	NA	NA	NA
WP_060404478.1\|3363186_3363378_+	hypothetical protein	NA	NA	NA	NA
WP_080438951.1\|3363414_3363657_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	2.8e-07	38.8
WP_060404459.1\|3363658_3364708_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	2.0e-102	56.3
3378273:3378289	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3726559 : 3734315

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002553984.1\|3726559_3727861_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.8e-61	35.8
WP_002553985.1\|3728095_3728488_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	8.2e-57	82.3
WP_002553986.1\|3728489_3728852_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.1e-35	60.8
WP_002553987.1\|3728851_3729151_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.9e-30	62.6
WP_054072424.1\|3729147_3729483_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.4e-43	77.5
WP_054072423.1\|3729479_3730481_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.6e-163	83.2
WP_060403593.1\|3730589_3731588_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_060403594.1\|3731639_3733034_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_060403595.1\|3733034_3734315_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	53.9

DBSCAN-SWA_6

5371368 : 5404910

Pseudomonas_phage(57.69%)

plate,lysis,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010203126.1\|5371368_5372580_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_057421167.1\|5372781_5374200_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_002551954.1\|5374203_5375298_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5375360_5375711_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_004663836.1\|5375810_5376845_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_004660765.1\|5376978_5377407_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_044321639.1\|5377515_5378421_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_002551949.1\|5378487_5379264_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002551948.1\|5379367_5379706_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_002551947.1\|5379828_5380476_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_002551946.1\|5380552_5381347_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_060403198.1\|5381589_5382012_-	OsmC family protein	NA	NA	NA	NA
WP_005743964.1\|5382222_5382867_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_044321640.1\|5382878_5383574_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_002551942.1\|5383603_5384440_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.3e-69	56.2
WP_005733295.1\|5384436_5385486_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.1e-111	58.0
WP_002551940.1\|5385507_5386107_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.5e-73	64.7
WP_005733294.1\|5386520_5387030_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	9.7e-26	46.6
WP_005733293.1\|5387026_5387572_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.0e-69	72.8
WP_057424631.1\|5387684_5388230_-	hypothetical protein	NA	NA	NA	NA
WP_060403197.1\|5388240_5390115_-	hypothetical protein	A0A077K818	Ralstonia_phage	1.3e-38	53.7
WP_060403196.1\|5390125_5390725_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	7.5e-86	72.4
WP_060403195.1\|5390712_5391753_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	7.1e-132	70.1
WP_005733287.1\|5391742_5392141_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	1.5e-42	63.6
WP_002551923.1\|5392137_5392650_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.4e-64	73.2
WP_060403194.1\|5392646_5393774_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	2.1e-113	60.5
WP_060403193.1\|5393777_5395118_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	9.5e-113	47.7
WP_060403192.1\|5395114_5397259_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.0e-76	39.1
WP_103356788.1\|5397258_5397444_-	hypothetical protein	NA	NA	NA	NA
WP_002551918.1\|5397389_5397686_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	77.4
WP_003316279.1\|5397682_5398030_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
WP_060403191.1\|5398090_5399587_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	1.9e-234	80.1
WP_060403190.1\|5399605_5399794_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	7.7e-13	61.0
WP_058408563.1\|5399790_5400381_-	hypothetical protein	B5TK65	Pseudomonas_phage	3.7e-53	52.6
WP_003372736.1\|5400426_5400765_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	9.0e-20	59.2
WP_003411734.1\|5400745_5401135_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_060403189.1\|5401257_5402430_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_005733278.1\|5402432_5402627_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	2.7e-13	92.1
WP_057433292.1\|5402899_5403343_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.5e-24	45.8
WP_003372744.1\|5403532_5404144_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.0e-49	49.2
WP_060403188.1\|5404297_5404546_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_031597872.1\|5404667_5404910_+	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.5e-16	51.2

DBSCAN-SWA_7

5629486 : 5692882

Escherichia_phage(28.57%)

transposase,holin,integrase,tRNA

attL 5659270:5659288|attR 5695973:5695991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060403475.1\|5629486_5630464_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	9.1e-97	57.6
WP_060402959.1\|5630962_5631340_+	hypothetical protein	NA	NA	NA	NA
WP_060402940.1\|5631593_5632919_-	OprD family porin	NA	NA	NA	NA
WP_060402941.1\|5633370_5633595_-	hypothetical protein	NA	NA	NA	NA
WP_060402942.1\|5633812_5634142_+	DUF2790 domain-containing protein	NA	NA	NA	NA
WP_044322400.1\|5634421_5635681_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	3.0e-108	85.6
WP_111780182.1\|5635681_5636581_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_060402944.1\|5636862_5638179_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060402945.1\|5638218_5638992_+	L-iditol 2-dehydrogenase	NA	NA	NA	NA
WP_002555713.1\|5639115_5639937_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.7e-46	43.5
WP_002555714.1\|5640048_5641869_-	translational GTPase TypA	NA	NA	NA	NA
WP_004654939.1\|5642013_5643468_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_060402946.1\|5643803_5645210_+	glutamate--ammonia ligase	NA	NA	NA	NA
WP_002555717.1\|5645374_5645932_+	chorismate mutase	NA	NA	NA	NA
WP_005733883.1\|5645971_5646553_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_005733882.1\|5646564_5647182_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_002555720.1\|5647465_5648551_+	nitrogen regulation protein NR(II)	Q8QKV7	Ectocarpus_siliculosus_virus	6.1e-09	24.3
WP_002555721.1\|5648547_5649984_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_002555722.1\|5650083_5651877_+	amidase	NA	NA	NA	NA
WP_134941831.1\|5651873_5652056_+	hypothetical protein	NA	NA	NA	NA
WP_005733878.1\|5652021_5653059_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_060402947.1\|5653141_5654077_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060402948.1\|5654292_5655618_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_060402960.1\|5655653_5657921_-	TonB-dependent receptor	NA	NA	NA	NA
WP_060402949.1\|5658142_5659189_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
5659270:5659288	attL	NA	NA	NA	NA
WP_004667123.1\|5659348_5661343_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	2.6e-21	27.0
WP_135003628.1\|5661606_5661822_+	hypothetical protein	NA	NA	NA	NA
WP_057411913.1\|5661955_5663653_+	urocanate hydratase	NA	NA	NA	NA
WP_005733872.1\|5663765_5664734_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005745086.1\|5664807_5665659_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
WP_007247035.1\|5665655_5666486_+	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.9e-27	35.9
WP_111780184.1\|5666498_5668040_+	histidine ammonia-lyase	NA	NA	NA	NA
WP_060402951.1\|5668095_5669643_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	7.4e-85	37.6
WP_044322806.1\|5669749_5671126_+	amino acid permease	NA	NA	NA	NA
WP_060402952.1\|5671141_5672347_+	imidazolonepropionase	NA	NA	NA	NA
WP_044321000.1\|5672358_5673159_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_099456774.1\|5673345_5675598_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.1e-141	41.2
WP_002555740.1\|5675684_5676131_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_002555741.1\|5676152_5677049_-	hypothetical protein	I6PD67	Cronobacter_phage	8.0e-15	28.6
WP_103356851.1\|5678401_5679901_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_003417182.1\|5679893_5680697_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.4e-33	37.0
WP_044310655.1\|5681296_5681938_-	HAD family hydrolase	NA	NA	NA	NA
WP_044310657.1\|5682316_5682814_-	hypothetical protein	NA	NA	NA	NA
WP_002551322.1\|5683211_5684234_+\|transposase	IS21-like element ISPsy4 family transposase	A0A2L1IVA1	Escherichia_phage	1.7e-77	46.1
WP_005741073.1\|5684230_5685040_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
WP_044310665.1\|5685192_5685942_-	metallophosphoesterase family protein	A0A292GAR7	Xanthomonas_phage	5.6e-30	35.6
WP_044310659.1\|5686214_5686655_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044310660.1\|5687134_5687968_-	thymidylate synthase	E5DV96	Deep-sea_thermophilic_phage	1.9e-103	63.9
WP_044310661.1\|5687964_5688471_-	hypothetical protein	NA	NA	NA	NA
WP_060403503.1\|5688467_5690537_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_060403504.1\|5690533_5692882_-\|integrase	site-specific integrase	NA	NA	NA	NA
5695973:5695991	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT985194

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3587 : 68348

Escherichia_phage(33.33%)

transposase,integrase

attL 1417:1431|attR 21055:21069

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1417:1431	attL	NA	NA	NA	NA
WP_099456684.1\|3587_4550_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4IA68	Gordonia_phage	2.0e-16	29.0
WP_044310941.1\|5284_5713_+	pilin	NA	NA	NA	NA
WP_099456683.1\|5865_6282_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	4.8e-15	36.4
WP_099456682.1\|10027_11563_-	RHS repeat protein	NA	NA	NA	NA
WP_103356851.1\|11902_13402_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.8e-12	27.0
WP_003417182.1\|13394_14198_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.4e-33	37.0
WP_057447598.1\|14538_15384_-	hypothetical protein	NA	NA	NA	NA
WP_053486278.1\|17275_17716_+	hypothetical protein	NA	NA	NA	NA
WP_044424146.1\|17873_18422_-	hypothetical protein	NA	NA	NA	NA
WP_007247501.1\|18927_19305_+	hypothetical protein	NA	NA	NA	NA
WP_103753198.1\|19351_20188_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	6.0e-49	42.1
WP_004666908.1\|20255_20456_+	hypothetical protein	NA	NA	NA	NA
WP_111780218.1\|20522_20801_-	mobilization protein	NA	NA	NA	NA
WP_005622131.1\|21098_21443_-	hypothetical protein	NA	NA	NA	NA
21055:21069	attR	NA	NA	NA	NA
WP_060402973.1\|21702_22032_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_060402972.1\|22042_23998_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_019740136.1\|24241_24607_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_053486275.1\|25001_25205_+	hypothetical protein	NA	NA	NA	NA
WP_015062536.1\|26040_27270_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_015062535.1\|27250_27532_-	hypothetical protein	NA	NA	NA	NA
WP_060403602.1\|28270_28543_+	hypothetical protein	NA	NA	NA	NA
WP_081080454.1\|28755_29430_+	MobA/MobL family protein	NA	NA	NA	NA
WP_003348567.1\|29426_29954_-	hypothetical protein	NA	NA	NA	NA
WP_005730619.1\|30069_30363_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_060403601.1\|30634_30928_-	HU family DNA-binding protein	B5TA87	Burkholderia_phage	6.6e-11	40.0
WP_015062535.1\|31250_31532_+	hypothetical protein	NA	NA	NA	NA
WP_015062536.1\|31512_32742_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_005735414.1\|33029_33539_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.3e-17	39.5
WP_024420007.1\|34167_35133_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_005622074.1\|35171_36620_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_111780219.1\|38792_39980_-	AMP-binding protein	NA	NA	NA	NA
WP_065348661.1\|40062_41439_-	multidrug transporter MatE	NA	NA	NA	NA
WP_104721077.1\|42010_43240_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_060407302.1\|43220_43502_-	hypothetical protein	NA	NA	NA	NA
WP_104721076.1\|43775_45002_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_044310977.1\|45557_45740_+	type II toxin-antitoxin system HicA family toxin	A0A2H4JDU5	uncultured_Caudovirales_phage	2.1e-07	54.2
WP_060404204.1\|45771_46194_+	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	4.6e-21	39.0
WP_060404205.1\|46702_49729_-\|transposase	Tn3-like element ISPsy30 family transposase	NA	NA	NA	NA
WP_057425230.1\|49718_50315_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.6e-41	50.3
WP_005752338.1\|50631_51162_-	hypothetical protein	NA	NA	NA	NA
WP_060402791.1\|52548_52830_-	hypothetical protein	NA	NA	NA	NA
WP_104698134.1\|53330_54563_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_060403786.1\|54687_55293_+	T3SS effector protein kinase HopBF1	NA	NA	NA	NA
WP_005741073.1\|56359_57169_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
WP_002551322.1\|57165_58188_-\|transposase	IS21-like element ISPsy4 family transposase	A0A2L1IVA1	Escherichia_phage	1.7e-77	46.1
WP_103356806.1\|58242_58503_-	hypothetical protein	NA	NA	NA	NA
WP_060404139.1\|58919_59744_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_060404140.1\|60041_60353_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004643047.1\|60349_60601_-	antitoxin	NA	NA	NA	NA
WP_004666950.1\|62539_62779_+	hypothetical protein	NA	NA	NA	NA
WP_015060871.1\|62855_62993_+	hypothetical protein	NA	NA	NA	NA
WP_015060872.1\|63112_63541_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_111780220.1\|63894_64797_+	hypothetical protein	NA	NA	NA	NA
WP_111780221.1\|64813_65041_+	hypothetical protein	NA	NA	NA	NA
WP_099456498.1\|65510_66257_+	hypothetical protein	NA	NA	NA	NA
WP_015062536.1\|67118_68348_-\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT985192

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT985194

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection