CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS399318	Klebsiella pneumoniae isolate CNR48 chromosome CNR48	1 crisprs	csa3,cas3,DinG,WYL,DEDDh	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS399318_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS399318_1

1632146-1632240

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS399318_1

>merge|NZ_LS399318|1|1632146-1632240|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_LS399318|1|1|1632146-1632240|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS399318.1\|WP_002888332.1\|1634727_1635555_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_LS399318.1\|WP_002888320.1\|1643127_1643607_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_LS399318.1\|WP_004145972.1\|1618361_1619207_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_LS399318.1\|WP_023343000.1\|1639493_1640483_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_LS399318.1\|WP_002888373.1\|1617465_1618233_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_LS399318.1\|WP_002888329.1\|1638201_1639488_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_LS399318.1\|WP_004177424.1\|1621264_1622767_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_LS399318.1\|WP_004178574.1\|1626320_1629227_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_LS399318.1\|WP_002888345.1\|1630692_1632057_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_LS399318.1\|WP_004177431.1\|1641685_1642534_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_LS399318.1\|WP_111778331.1\|1619544_1621254_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_LS399318.1\|WP_023342999.1\|1623775_1626133_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_LS399318.1\|WP_002888323.1\|1641303_1641681_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_LS399318.1\|WP_016531719.1\|1622904_1623600_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_LS399318.1\|WP_002888337.1\|1633996_1634695_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_LS399318.1\|WP_004177427.1\|1629239_1629899_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_LS399318.1\|WP_002888347.1\|1629973_1630513_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_LS399318.1\|WP_004147026.1\|1635798_1638147_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_LS399318.1\|WP_002888324.1\|1640479_1641301_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_LS399318.1\|WP_023302315.1\|1632381_1634007_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827

Protein	Function_ID	Function_description	E-value
NZ_LS399318.1\|WP_002888332.1\|1634727_1635555_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_LS399318.1\|WP_002888320.1\|1643127_1643607_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_LS399318.1\|WP_004145972.1\|1618361_1619207_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_LS399318.1\|WP_023343000.1\|1639493_1640483_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_LS399318.1\|WP_002888373.1\|1617465_1618233_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_LS399318.1\|WP_002888329.1\|1638201_1639488_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_LS399318.1\|WP_004177424.1\|1621264_1622767_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_LS399318.1\|WP_004178574.1\|1626320_1629227_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_LS399318.1\|WP_002888345.1\|1630692_1632057_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_LS399318.1\|WP_004177431.1\|1641685_1642534_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_LS399318.1\|WP_111778331.1\|1619544_1621254_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_LS399318.1\|WP_023342999.1\|1623775_1626133_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_LS399318.1\|WP_002888323.1\|1641303_1641681_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_LS399318.1\|WP_016531719.1\|1622904_1623600_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_LS399318.1\|WP_002888337.1\|1633996_1634695_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_LS399318.1\|WP_004177427.1\|1629239_1629899_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
NZ_LS399318.1\|WP_002888347.1\|1629973_1630513_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_LS399318.1\|WP_004147026.1\|1635798_1638147_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_LS399318.1\|WP_002888324.1\|1640479_1641301_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_LS399318.1\|WP_023302315.1\|1632381_1634007_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172

>NZ_LS399318.1|WP_002888345.1|1630692_1632057_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_LS399318.1|WP_002888347.1|1629973_1630513_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_LS399318.1|WP_004177427.1|1629239_1629899_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_LS399318.1|WP_004178574.1|1626320_1629227_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_LS399318.1|WP_023342999.1|1623775_1626133_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_LS399318.1|WP_016531719.1|1622904_1623600_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_LS399318.1|WP_004177424.1|1621264_1622767_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_LS399318.1|WP_111778331.1|1619544_1621254_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILLVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_LS399318.1|WP_004145972.1|1618361_1619207_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_LS399318.1|WP_002888373.1|1617465_1618233_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_LS399318.1|WP_023302315.1|1632381_1634007_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_LS399318.1|WP_002888337.1|1633996_1634695_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_LS399318.1|WP_002888332.1|1634727_1635555_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_LS399318.1|WP_004147026.1|1635798_1638147_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_LS399318.1|WP_002888329.1|1638201_1639488_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_LS399318.1|WP_023343000.1|1639493_1640483_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_LS399318.1|WP_002888324.1|1640479_1641301_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_LS399318.1|WP_002888323.1|1641303_1641681_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_LS399318.1|WP_004177431.1|1641685_1642534_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_LS399318.1|WP_002888320.1|1643127_1643607_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

627784 : 637258

Brazilian_cedratvirus(16.67%)

tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023302125.1\|627784_629506_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_023302126.1\|629550_630252_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|630605_630824_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|630954_633234_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|633264_633582_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|633907_634129_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|634205_636146_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|636142_637258_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_2

1118867 : 1170251

Cronobacter_phage(27.66%)

head,tRNA,lysis,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040181289.1\|1118867_1119107_-	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
WP_071854268.1\|1119212_1120013_-	hypothetical protein	NA	NA	NA	NA
WP_040186451.1\|1122098_1124576_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.4e-197	45.3
WP_040181295.1\|1124562_1124958_-	C40 family peptidase	F1C5F2	Cronobacter_phage	4.7e-36	54.8
WP_004196571.1\|1124954_1125425_-	hypothetical protein	R9TPR6	Aeromonas_phage	1.2e-27	40.4
WP_023283377.1\|1125424_1125901_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.0
WP_071854269.1\|1126014_1126428_+	hypothetical protein	G0ZNE8	Cronobacter_phage	5.0e-65	89.8
WP_040181302.1\|1126447_1126627_-	hypothetical protein	NA	NA	NA	NA
WP_058842809.1\|1126667_1130108_-	tape measure protein	Q5G8W8	Enterobacteria_phage	7.3e-133	40.5
WP_029884072.1\|1130202_1130706_-	hypothetical protein	NA	NA	NA	NA
WP_074160392.1\|1130808_1131036_-	hypothetical protein	NA	NA	NA	NA
WP_129693860.1\|1131130_1131448_+	hypothetical protein	NA	NA	NA	NA
WP_023328739.1\|1131499_1131820_-	hypothetical protein	NA	NA	NA	NA
WP_048294323.1\|1132302_1132776_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	2.1e-14	40.6
WP_072061015.1\|1132812_1133244_-	hypothetical protein	NA	NA	NA	NA
WP_129312537.1\|1133254_1133620_-	hypothetical protein	NA	NA	NA	NA
WP_049182521.1\|1133616_1133922_-	hypothetical protein	NA	NA	NA	NA
WP_004178855.1\|1134226_1134910_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.3e-75	59.7
WP_048294321.1\|1134962_1135715_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	1.7e-42	41.8
WP_048294319.1\|1135783_1136176_-	hypothetical protein	G0ZNE4	Cronobacter_phage	2.0e-34	51.9
WP_004151265.1\|1136172_1136598_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_058842810.1\|1136600_1136963_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.3e-20	49.2
WP_038434988.1\|1136962_1137136_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	1.2e-12	51.8
WP_058842811.1\|1137135_1137516_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.8e-29	56.1
WP_058842812.1\|1137518_1137794_-	hypothetical protein	NA	NA	NA	NA
WP_004191540.1\|1137804_1138899_-	hypothetical protein	F1C5E1	Cronobacter_phage	2.2e-123	62.8
WP_058842813.1\|1138910_1139339_-	hypothetical protein	F1C5E0	Cronobacter_phage	8.1e-42	60.8
WP_040186437.1\|1139342_1140728_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.5e-153	59.7
WP_049185996.1\|1140800_1141151_-	hypothetical protein	NA	NA	NA	NA
WP_064148479.1\|1141250_1142264_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.5e-110	67.5
WP_058842815.1\|1142196_1143660_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	4.0e-149	56.1
WP_048294304.1\|1143672_1144971_-\|terminase	PBSX family phage terminase large subunit	Q5G8Y7	Enterobacteria_phage	3.0e-241	94.3
WP_111778328.1\|1144954_1145422_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.7e-56	73.2
WP_058842816.1\|1145452_1146079_-	hypothetical protein	I6S676	Salmonella_phage	8.4e-104	84.9
WP_058842820.1\|1146928_1147387_+	hypothetical protein	NA	NA	NA	NA
WP_087760209.1\|1147820_1147958_-	hypothetical protein	NA	NA	NA	NA
WP_058842818.1\|1147960_1148428_-\|lysis	lysis protein	A0A192Y689	Salmonella_phage	1.0e-53	71.6
WP_004146527.1\|1148424_1148955_-	lysozyme	G9L6J6	Escherichia_phage	5.4e-80	79.7
WP_004151282.1\|1148957_1149206_-\|holin	class II holin family protein	NA	NA	NA	NA
WP_048322094.1\|1149633_1150158_+	hypothetical protein	NA	NA	NA	NA
WP_048322093.1\|1150502_1151192_-	antiterminator	I6PDF8	Cronobacter_phage	1.9e-56	54.5
WP_048322092.1\|1151188_1151329_-	YlcG family protein	NA	NA	NA	NA
WP_058842819.1\|1151325_1151961_-	recombination protein NinG	M9NYX8	Enterobacteria_phage	2.2e-80	77.0
WP_032431555.1\|1151953_1152124_-	NinE family protein	G8C7V4	Escherichia_phage	5.7e-15	73.2
WP_016530701.1\|1152104_1152572_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	1.5e-33	46.5
WP_048322089.1\|1152762_1153020_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.4e-26	74.0
WP_032432693.1\|1153348_1153546_-	hypothetical protein	NA	NA	NA	NA
WP_048322087.1\|1153538_1153805_-	hypothetical protein	A0A077SLR0	Escherichia_phage	4.6e-27	69.8
WP_048322086.1\|1154816_1155335_-	hypothetical protein	G9L6B3	Escherichia_phage	1.8e-91	92.7
WP_048322084.1\|1155837_1156035_-	hypothetical protein	NA	NA	NA	NA
WP_048322083.1\|1156027_1156291_-	DUF4752 family protein	T1S9K2	Salmonella_phage	1.3e-29	75.6
WP_040181698.1\|1156287_1156710_-	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
WP_004218528.1\|1156706_1157009_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040181695.1\|1157005_1157743_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
WP_170324251.1\|1157739_1158768_-	replication protein	A5VW95	Enterobacteria_phage	1.5e-62	80.8
WP_040181694.1\|1158764_1159562_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
WP_004139615.1\|1159647_1159869_-	bacteriophage CII family protein	NA	NA	NA	NA
WP_004178811.1\|1159908_1160142_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_024622727.1\|1160246_1160936_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-86	70.6
WP_032434121.1\|1161276_1161993_+	hypothetical protein	NA	NA	NA	NA
WP_032434120.1\|1161983_1162529_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_024622729.1\|1162577_1162781_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.0e-18	71.6
WP_074183191.1\|1163090_1163216_+	hypothetical protein	NA	NA	NA	NA
WP_019704100.1\|1163208_1163403_+	hypothetical protein	NA	NA	NA	NA
WP_040182107.1\|1163492_1163777_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-40	81.9
WP_040182110.1\|1163793_1164540_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	7.0e-65	67.7
WP_040182112.1\|1164536_1165160_+	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	5.8e-57	59.2
WP_040182113.1\|1165188_1165716_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.0
WP_040182114.1\|1165712_1165931_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
WP_071531921.1\|1165932_1166268_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004143017.1\|1167739_1168606_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004143016.1\|1168607_1168820_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|1168865_1170251_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_3

3802894 : 3862082

Klebsiella_phage(55.32%)

head,portal,tRNA,terminase,integrase,tail,protease,holin,capsid

attL 3825894:3825917|attR 3865348:3865371

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004145598.1\|3802894_3804313_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_002913435.1\|3804364_3804757_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002913434.1\|3804760_3805114_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_023301631.1\|3805735_3807907_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002913423.1\|3807955_3809158_-	nucleoside permease NupC	NA	NA	NA	NA
WP_002913421.1\|3809504_3810746_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_004899719.1\|3810803_3811157_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_023301632.1\|3811287_3812280_-	aldo/keto reductase	NA	NA	NA	NA
WP_023301633.1\|3812460_3814122_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_004180794.1\|3814118_3815354_-	ion channel protein	NA	NA	NA	NA
WP_002913377.1\|3815617_3816583_+	glucokinase	NA	NA	NA	NA
WP_002913374.1\|3816636_3817374_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
WP_004149230.1\|3817385_3819083_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-47	28.5
WP_004153200.1\|3819081_3819195_+	hypothetical protein	NA	NA	NA	NA
WP_032409803.1\|3819191_3819377_-	hypothetical protein	NA	NA	NA	NA
WP_002913372.1\|3819465_3820680_+	alanine transaminase	NA	NA	NA	NA
WP_099119320.1\|3820750_3820822_-	membrane protein YpdK	NA	NA	NA	NA
WP_004185022.1\|3821160_3822357_-	cyanate transporter	NA	NA	NA	NA
WP_023301635.1\|3822353_3822812_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	7.2e-12	33.1
WP_004149227.1\|3822944_3823853_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2
WP_023301636.1\|3823862_3824744_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_004174945.1\|3825110_3825593_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
3825894:3825917	attL	NA	NA	NA	NA
WP_064184927.1\|3826111_3827281_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	1.1e-200	85.5
WP_064184926.1\|3827313_3828252_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	5.8e-08	31.7
WP_077255880.1\|3828267_3828453_-	hypothetical protein	G3CFG7	Escherichia_phage	2.4e-14	61.4
WP_064184925.1\|3828460_3829069_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.8e-48	82.4
WP_004141386.1\|3829065_3829278_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_064184924.1\|3829277_3830018_-	hypothetical protein	R9TPK2	Aeromonas_phage	2.5e-30	97.3
WP_048270910.1\|3830295_3830706_-	hypothetical protein	NA	NA	NA	NA
WP_064184923.1\|3830833_3831619_-	hypothetical protein	C7BGF1	Burkholderia_phage	8.1e-64	53.3
WP_040149782.1\|3831618_3831918_-	hypothetical protein	NA	NA	NA	NA
WP_019705289.1\|3832306_3832951_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.2e-38	40.7
WP_024176406.1\|3833045_3833255_+	cell division protein	NA	NA	NA	NA
WP_004213338.1\|3833280_3833742_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_001208720.1\|3833979_3834159_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_064184921.1\|3834148_3835117_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	5.5e-86	66.4
WP_049006283.1\|3835113_3835923_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	3.5e-110	69.3
WP_000779146.1\|3835932_3836310_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_071854253.1\|3836322_3837303_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-134	66.9
WP_064184919.1\|3837316_3837895_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.9e-49	55.6
WP_064184918.1\|3838046_3838286_+	hypothetical protein	NA	NA	NA	NA
WP_024176410.1\|3838455_3838755_+\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_064184917.1\|3838751_3839291_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.1e-99	96.6
WP_064184916.1\|3839287_3839635_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.7e-38	78.3
WP_064184915.1\|3839631_3839907_+	hypothetical protein	G8C7W1	Escherichia_phage	2.1e-22	65.2
WP_052454910.1\|3839857_3840055_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	7.3e-22	84.5
WP_106493672.1\|3840210_3840633_+	hypothetical protein	NA	NA	NA	NA
WP_064184914.1\|3840629_3841922_+	hypothetical protein	NA	NA	NA	NA
WP_004216876.1\|3841998_3842244_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
WP_042950192.1\|3842310_3842532_+	hypothetical protein	NA	NA	NA	NA
WP_042950190.1\|3842588_3842879_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.7e-51	94.8
WP_004216880.1\|3842891_3843101_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	2.6e-25	87.0
WP_064184913.1\|3843222_3843657_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	2.4e-73	99.3
WP_004143904.1\|3843666_3845199_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_017880221.1\|3845201_3846479_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_077269009.1\|3846484_3847165_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	6.0e-124	99.6
WP_064184946.1\|3847176_3848340_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	7.7e-212	99.7
WP_133060710.1\|3848376_3848619_+	hypothetical protein	NA	NA	NA	NA
WP_017880223.1\|3848566_3848893_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_004143899.1\|3848953_3849151_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
WP_064184945.1\|3849152_3849485_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	1.5e-56	99.1
WP_064184944.1\|3849477_3850017_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	2.3e-94	99.4
WP_000561415.1\|3850013_3850379_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_000115125.1\|3850435_3850927_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_004899623.1\|3850970_3851354_+\|tail	phage tail assembly chaperone family protein, TAC	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
WP_004104224.1\|3851356_3851620_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	3.0e-39	91.9
WP_133060711.1\|3851678_3852056_+	hypothetical protein	NA	NA	NA	NA
WP_064184943.1\|3852104_3854639_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	74.4
WP_004899614.1\|3854638_3855118_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_064184942.1\|3855104_3855587_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.9e-85	98.8
WP_064184941.1\|3855596_3855977_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-69	96.0
WP_065802474.1\|3855973_3859042_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.7
WP_040181868.1\|3861087_3861888_+	hypothetical protein	NA	NA	NA	NA
WP_074177881.1\|3861899_3862082_+	helix-turn-helix domain-containing protein	A0A286S1P7	Klebsiella_phage	1.5e-18	88.9
3865348:3865371	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4087003 : 4093908

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|4087003_4087867_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|4087877_4088651_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|4088891_4089788_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|4090030_4091392_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|4091710_4092433_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|4092429_4093908_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_5

4363402 : 4432113

Salmonella_phage(26.98%)

transposase,plate,lysis,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175494.1\|4363402_4364698_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
WP_074183181.1\|4364709_4365519_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021312745.1\|4365759_4367022_-	DUF3596 domain-containing protein	A0A286S1S8	Klebsiella_phage	1.7e-233	95.0
WP_040181674.1\|4367064_4367310_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.9e-35	92.1
WP_016529283.1\|4367313_4367532_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
WP_040181675.1\|4367528_4367738_-	hypothetical protein	NA	NA	NA	NA
WP_040181676.1\|4367734_4368040_-	hypothetical protein	A0A1B3AZN4	Gordonia_phage	7.4e-05	35.6
WP_040181677.1\|4368036_4368228_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	1.6e-13	64.4
WP_040181678.1\|4368224_4368989_-	hypothetical protein	Q71T76	Escherichia_phage	2.7e-72	58.7
WP_040181679.1\|4369205_4369976_-	hypothetical protein	D5LH17	Escherichia_phage	3.2e-65	51.0
WP_040181681.1\|4369972_4370500_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
WP_016529279.1\|4370496_4370655_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
WP_040181683.1\|4370651_4371338_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.8e-113	90.6
WP_129693859.1\|4371330_4371951_-	hypothetical protein	A0A076GAP8	Staphylococcus_phage	5.5e-23	43.8
WP_040181685.1\|4371947_4372793_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
WP_040181687.1\|4372808_4373093_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.3e-39	78.7
WP_004151303.1\|4373182_4373377_-	hypothetical protein	NA	NA	NA	NA
WP_165758635.1\|4373369_4373528_-	hypothetical protein	NA	NA	NA	NA
WP_040181691.1\|4373821_4374454_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	9.2e-34	40.0
WP_023284762.1\|4374553_4374769_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	4.2e-15	60.9
WP_040181693.1\|4374818_4375139_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	7.7e-37	69.8
WP_040181694.1\|4375225_4376023_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
WP_170324251.1\|4376019_4377048_+	replication protein	A5VW95	Enterobacteria_phage	1.5e-62	80.8
WP_040181695.1\|4377044_4377782_+	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
WP_004218528.1\|4377778_4378081_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040181698.1\|4378077_4378500_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
WP_040181701.1\|4378496_4378757_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_004141386.1\|4379288_4379501_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_087750241.1\|4380129_4380543_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	1.1e-11	34.6
WP_040181178.1\|4381043_4381499_+	hypothetical protein	K7P7B8	Enterobacteria_phage	4.0e-55	68.2
WP_040181180.1\|4381498_4381669_+	NinE family protein	G8C7V4	Escherichia_phage	1.7e-14	73.2
WP_040181182.1\|4381661_4382300_+	recombination protein NinG	H6WRY9	Salmonella_phage	1.2e-73	68.4
WP_040181184.1\|4382296_4382437_+	YlcG family protein	NA	NA	NA	NA
WP_040181186.1\|4382433_4383243_+	antitermination protein	M9NZB0	Enterobacteria_phage	1.9e-116	75.1
WP_004146347.1\|4384428_4384743_+	hypothetical protein	H6WRZ3	Salmonella_phage	6.3e-44	86.1
WP_040181191.1\|4384745_4385249_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
WP_111778345.1\|4385245_4385713_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.2e-56	73.5
WP_087749278.1\|4385715_4385853_+	hypothetical protein	NA	NA	NA	NA
WP_021441335.1\|4386209_4386698_+	hypothetical protein	NA	NA	NA	NA
WP_040181195.1\|4386648_4388049_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	7.2e-188	69.2
WP_039108763.1\|4388286_4389738_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	7.2e-191	68.4
WP_025714257.1\|4389793_4390342_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.0e-49	56.9
WP_025714258.1\|4390387_4390582_+	hypothetical protein	NA	NA	NA	NA
WP_040181203.1\|4390591_4391794_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	5.3e-107	52.8
WP_040181205.1\|4391797_4392292_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	2.1e-49	61.5
WP_040181207.1\|4392303_4393245_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	7.8e-138	77.4
WP_040181209.1\|4393284_4393566_+	hypothetical protein	NA	NA	NA	NA
WP_040181211.1\|4393534_4393954_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.1e-40	61.5
WP_040181213.1\|4393950_4394457_+	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	2.4e-16	37.2
WP_023312779.1\|4394456_4394843_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.8e-49	79.0
WP_004152176.1\|4394937_4395378_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_040181215.1\|4395381_4396527_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	77.2
WP_023312781.1\|4396536_4396980_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.1e-61	80.0
WP_040181217.1\|4396983_4397403_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	8.8e-41	63.4
WP_016244729.1\|4397444_4397597_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.4e-17	84.0
WP_040181220.1\|4397586_4399506_+	bacteriophage protein	A0A0M4REK7	Salmonella_phage	3.0e-192	72.3
WP_016244727.1\|4399505_4400105_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_074183180.1\|4400180_4400408_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.7e-19	54.7
WP_040181225.1\|4400410_4401442_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	3.5e-99	54.0
WP_087760196.1\|4401542_4401776_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	8.9e-19	52.6
WP_040181227.1\|4401814_4402321_+	hypothetical protein	A0A0M3ULK2	Salmonella_phage	3.1e-32	47.6
WP_040181228.1\|4402359_4403115_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.0e-84	66.0
WP_023312790.1\|4403114_4403468_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.8e-50	79.5
WP_040181231.1\|4403467_4404667_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	1.3e-161	75.3
WP_040181232.1\|4404663_4405437_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.8e-68	51.0
WP_023284799.1\|4405436_4406210_+	hypothetical protein	A0A248SL44	Klebsiella_phage	3.0e-26	49.7
WP_013815099.1\|4406278_4407247_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
WP_111778346.1\|4407294_4409274_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	8.1e-28	28.4
WP_072040613.1\|4409283_4410084_+	hypothetical protein	NA	NA	NA	NA
WP_040181236.1\|4410189_4410429_+	hypothetical protein	K7P7N3	Enterobacteria_phage	1.1e-16	54.4
WP_040181238.1\|4410428_4410746_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.8e-22	52.0
WP_040181240.1\|4411720_4412203_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|4412394_4413093_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_002910652.1\|4413118_4413658_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|4413772_4414102_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_009307582.1\|4414667_4416008_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004175498.1\|4416004_4416658_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009307583.1\|4416661_4418359_+	OmpA family protein	NA	NA	NA	NA
WP_009307584.1\|4418817_4421445_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.3e-17	31.5
WP_023342696.1\|4421447_4423475_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JIA8	uncultured_Caudovirales_phage	2.6e-74	31.6
WP_004148791.1\|4423489_4424386_+	hypothetical protein	NA	NA	NA	NA
WP_032413757.1\|4424878_4425286_+	hypothetical protein	NA	NA	NA	NA
WP_029499423.1\|4425311_4425569_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_040181245.1\|4425573_4426785_+	hypothetical protein	NA	NA	NA	NA
WP_023301801.1\|4426799_4430216_+	type VI secretion system protein ImpL	NA	NA	NA	NA
WP_040181246.1\|4430349_4432113_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_6

5103253 : 5114128

Escherichia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040182019.1\|5103253_5106361_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004176258.1\|5106415_5107681_+	MFS transporter	NA	NA	NA	NA
WP_040182017.1\|5107711_5108800_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
WP_004176262.1\|5108886_5109147_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_002904004.1\|5109444_5110305_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|5110325_5111087_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|5111348_5112251_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210516.1\|5113507_5114128_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage