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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT992436 Staphylococcus aureus isolate 1549-REV chromosome I 4 crisprs DEDDh,DinG,cas3,csa3,WYL 2 0 8 0

Results visualization

1. NZ_LT992436
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992436_1 1239985-1240123 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992436_2 1430971-1431064 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992436_3 2437182-2437283 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992436_4 2647048-2647193 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 30035-30048 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 130496-130509 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 350011-350024 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 1267738-1267751 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 1278544-1278557 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 1278658-1278671 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 1278718-1278731 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 1313112-1313125 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 1471625-1471638 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 1983162-1983175 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 2020315-2020328 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 2542274-2542287 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 2598342-2598355 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 2647194-2647207 0 1.0
NZ_LT992436_4 4.2|2647165|14|NZ_LT992436|PILER-CR 2647165-2647178 14 NZ_LT992436.1 2647250-2647263 0 1.0
NZ_LT992436_1 1.1|1240036|37|NZ_LT992436|CRISPRCasFinder 1240036-1240072 37 NZ_LT992436.1 1239947-1239983 2 0.946

1. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 30035-30048, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

2. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 130496-130509, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

3. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 350011-350024, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

4. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 1267738-1267751, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

5. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 1278544-1278557, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

6. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 1278658-1278671, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

7. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 1278718-1278731, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

8. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 1313112-1313125, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

9. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 1471625-1471638, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

10. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 1983162-1983175, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

11. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 2020315-2020328, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

12. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 2542274-2542287, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

13. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 2598342-2598355, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

14. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 2647194-2647207, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

15. spacer 4.2|2647165|14|NZ_LT992436|PILER-CR matches to position: 2647250-2647263, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

16. spacer 1.1|1240036|37|NZ_LT992436|CRISPRCasFinder matches to position: 1239947-1239983, mismatch: 2, identity: 0.946

agctcacaaaacccttgatatcattggtttcccatga	CRISPR spacer
agctcacaaaacccttgatatcactggtttctcatga	Protospacer
***********************.*******.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31716 : 40189 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 295550 : 308537 23 Staphylococcus_phage(60.0%) portal,terminase,integrase attL 289373:289390|attR 312843:312860
DBSCAN-SWA_3 594721 : 603033 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_4 672347 : 681391 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 804775 : 851104 43 Staphylococcus_phage(91.43%) tRNA,protease,transposase NA
DBSCAN-SWA_6 943627 : 1037622 114 Staphylococcus_phage(87.18%) capsid,tRNA,portal,head,protease,terminase,tail,holin,integrase attL 1004474:1004491|attR 1028820:1028837
DBSCAN-SWA_7 2488041 : 2502317 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_8 2554521 : 2575022 26 Staphylococcus_phage(66.67%) coat,integrase,transposase attL 2557183:2557198|attR 2573210:2573225
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage