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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT992458 Staphylococcus aureus isolate 7_4623 chromosome I 9 crisprs csa3,WYL,TnsE_C,DEDDh,cas3,DinG 2 1 11 0

Results visualization

1. NZ_LT992458
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_1 850462-850595 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_2 854006-854139 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_3 878603-878697 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_4 922950-923028 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_5 1218685-1218835 Orphan NA
2 spacers
TnsE_C,csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_6 1287611-1287823 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_7 1661210-1661292 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_8 2545543-2545623 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992458_9 2757153-2757261 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT992458_4 4.1|922973|33|NZ_LT992458|CRISPRCasFinder 922973-923005 33 NZ_LT992458.1 299200-299232 2 0.939
NZ_LT992458_8 8.1|2545568|31|NZ_LT992458|CRISPRCasFinder 2545568-2545598 31 NZ_LT992458.1 2600522-2600552 2 0.935

1. spacer 4.1|922973|33|NZ_LT992458|CRISPRCasFinder matches to position: 299200-299232, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatg	Protospacer
*** ********.********************

2. spacer 8.1|2545568|31|NZ_LT992458|CRISPRCasFinder matches to position: 2600522-2600552, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT992458_6 6.2|1287743|34|NZ_LT992458|CRISPRCasFinder 1287743-1287776 34 NC_027332 Acinetobacter phage YMC13/03/R2096, complete genome 68639-68672 11 0.676
NZ_LT992458_6 6.2|1287743|34|NZ_LT992458|CRISPRCasFinder 1287743-1287776 34 KY000079 Acinetobacter phage AM24, complete genome 74925-74958 11 0.676

1. spacer 6.2|1287743|34|NZ_LT992458|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************..... 

2. spacer 6.2|1287743|34|NZ_LT992458|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************..... 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 200169 : 244211 63 Staphylococcus_phage(100.0%) capsid,plate,holin,portal,integrase,head,tail,terminase,protease attL 191602:191617|attR 249635:249650
DBSCAN-SWA_2 1356355 : 1428365 96 Staphylococcus_phage(94.74%) capsid,transposase,holin,portal,integrase,head,terminase,tail,protease attL 1375919:1375934|attR 1429545:1429560
DBSCAN-SWA_3 1552714 : 1601635 48 Staphylococcus_phage(92.11%) protease,tRNA,transposase NA
DBSCAN-SWA_4 1736845 : 1745888 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 1815312 : 1823624 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_6 2097389 : 2102577 9 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_7 2358925 : 2367398 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 2387181 : 2411648 27 Planktothrix_phage(50.0%) protease,bacteriocin,holin NA
DBSCAN-SWA_9 2466118 : 2489343 23 Streptococcus_phage(94.74%) integrase attL 2461827:2461844|attR 2500870:2500887
DBSCAN-SWA_10 2628994 : 2643310 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_11 2655280 : 2663100 10 Pandoravirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage