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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT992475 Staphylococcus aureus isolate 20_LA_415 chromosome I 8 crisprs TnsE_C,csa3,DEDDh,cas3,DinG,WYL 2 0 12 0

Results visualization

1. NZ_LT992475
NZ_LT992475 040000080000012000001600000200000024000002800000 CRISPR 1 2 3 4 5 6 7 8 Self-targeting Prophage 1 2 3 4 5 6 7 8 9 10 11 12 anti-CRISPR
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_1 193103-193253 Orphan NA
2 spacers
TnsE_C,csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_2 619575-619657 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_3 1547910-1547990 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_4 1759520-1759628 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_5 2709346-2709479 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_6 2712890-2713023 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_7 2737487-2737581 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992475_8 2781834-2781912 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT992475_3 3.1|1547935|31|NZ_LT992475|CRISPRCasFinder 1547935-1547965 31 NZ_LT992475.1 1602889-1602919 2 0.935
NZ_LT992475_8 8.1|2781857|33|NZ_LT992475|CRISPRCasFinder 2781857-2781889 33 NZ_LT992475.1 2158129-2158161 2 0.939

1. spacer 3.1|1547935|31|NZ_LT992475|CRISPRCasFinder matches to position: 1602889-1602919, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

2. spacer 8.1|2781857|33|NZ_LT992475|CRISPRCasFinder matches to position: 2158129-2158161, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatg	Protospacer
*** ********.********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 317331 : 387695 90 Staphylococcus_phage(78.57%) head,protease,tail,capsid,terminase,transposase,holin,portal,integrase attL 336601:336616|attR 388875:388890
DBSCAN-SWA_2 512154 : 560000 47 Staphylococcus_phage(91.89%) transposase,protease,tRNA NA
DBSCAN-SWA_3 695210 : 704253 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 773677 : 781989 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_5 1056779 : 1061967 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_6 1318314 : 1326787 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1346570 : 1371037 27 Planktothrix_phage(50.0%) holin,bacteriocin,protease NA
DBSCAN-SWA_8 1425507 : 1448732 23 Streptococcus_phage(94.74%) integrase attL 1421216:1421233|attR 1460259:1460276
DBSCAN-SWA_9 1497925 : 1543887 71 Staphylococcus_phage(70.15%) head,plate,tail,capsid,terminase,holin,portal,integrase attL 1491203:1491218|attR 1549012:1549027
DBSCAN-SWA_10 1631361 : 1645677 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_11 1657647 : 1665467 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_12 2059098 : 2103140 63 Staphylococcus_phage(98.41%) head,plate,protease,tail,capsid,terminase,holin,portal,integrase attL 2050531:2050546|attR 2108564:2108579
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage