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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT992476 Staphylococcus aureus isolate 21_LA_436 chromosome I 9 crisprs WYL,TnsE_C,csa3,DEDDh,cas3,DinG 2 1 12 0

Results visualization

1. NZ_LT992476
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_1 462168-462301 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_2 465712-465845 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_3 490309-490403 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_4 534656-534734 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_5 873666-873816 Orphan NA
2 spacers
TnsE_C,csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_6 929235-929447 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_7 1258429-1258511 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_8 2184327-2184407 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT992476_9 2395771-2395879 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT992476_4 4.1|534679|33|NZ_LT992476|CRISPRCasFinder 534679-534711 33 NZ_LT992476.1 2795438-2795470 2 0.939
NZ_LT992476_8 8.1|2184352|31|NZ_LT992476|CRISPRCasFinder 2184352-2184382 31 NZ_LT992476.1 2239209-2239239 2 0.935

1. spacer 4.1|534679|33|NZ_LT992476|CRISPRCasFinder matches to position: 2795438-2795470, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatg	Protospacer
*** ********.********************

2. spacer 8.1|2184352|31|NZ_LT992476|CRISPRCasFinder matches to position: 2239209-2239239, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT992476_6 6.2|929367|34|NZ_LT992476|CRISPRCasFinder 929367-929400 34 NC_027332 Acinetobacter phage YMC13/03/R2096, complete genome 68639-68672 11 0.676
NZ_LT992476_6 6.2|929367|34|NZ_LT992476|CRISPRCasFinder 929367-929400 34 KY000079 Acinetobacter phage AM24, complete genome 74925-74958 11 0.676

1. spacer 6.2|929367|34|NZ_LT992476|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************..... 

2. spacer 6.2|929367|34|NZ_LT992476|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************..... 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 774377 : 859524 89 Staphylococcus_phage(85.29%) capsid,protease,holin,transposase,tail,integrase,portal,head attL 767042:767058|attR 859425:859441
DBSCAN-SWA_2 1151008 : 1198854 47 Staphylococcus_phage(91.89%) transposase,protease,tRNA NA
DBSCAN-SWA_3 1334065 : 1343108 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 1412532 : 1420844 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_5 1694610 : 1699798 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_6 1956144 : 1964617 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1984400 : 2008867 27 Planktothrix_phage(50.0%) holin,protease,bacteriocin NA
DBSCAN-SWA_8 2063337 : 2086562 23 Streptococcus_phage(94.74%) integrase attL 2059046:2059063|attR 2098089:2098106
DBSCAN-SWA_9 2135745 : 2176984 66 Staphylococcus_phage(73.44%) capsid,plate,holin,integrase,terminase,tail,portal,head attL 2129033:2129048|attR 2185429:2185444
DBSCAN-SWA_10 2267681 : 2281997 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_11 2293967 : 2301787 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_12 2695349 : 2740449 66 Staphylococcus_phage(95.45%) capsid,plate,holin,protease,integrase,terminase,tail,portal,head attL 2686782:2686797|attR 2745873:2745888
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage