CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT992490	Vibrio cholerae strain 4295STDY6534200 chromosome 1	1 crisprs	cas3,DEDDh,csa3,DinG,csx1,TnsE_C,WYL	0	1	4	0
NZ_LT992491	Vibrio cholerae strain 4295STDY6534200 chromosome 2	2 crisprs	cas3,csa3	0	6	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT992490_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT992490_1

2645278-2645521

Orphan

Consensus_repeat	Method
AAAATGTGCCTCCTTAGCTCAGTCGGTAGAGCAACGGACTGATAATCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT992490_1

>merge|NZ_LT992490|1|2645278-2645521|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATTCCGGCAGCCGGCACCATTTAAAATTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCACGATTAAAAGTTGTGCCAAAGACACAATAAAAATTGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

>NZ_LT992490|1|1|2645278-2645521|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGG	TCGCCAGTTCGATTCCGGCAGCCGGCACCATTTAAAA
TTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTG	TCGGTGGTTCGATTCCGCCTCGAGGCACCACGATTAAAAGTTGTGCCAAAGACACAATAAAAAT
TGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT992490.1\|WP_000725010.1\|2638373_2638976_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_LT992490.1\|WP_174566580.1\|2649497_2651891_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_LT992490.1\|WP_174566581.1\|2651943_2653239_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_LT992490.1\|WP_000383338.1\|2655131_2655512_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_LT992490.1\|WP_000546918.1\|2648484_2649339_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_LT992490.1\|WP_001243260.1\|2654234_2655050_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_LT992490.1\|WP_071179064.1\|2640376_2641297_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_LT992490.1\|WP_000095771.1\|2653228_2654221_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_LT992490.1\|WP_000954087.1\|2656990_2657464_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|182143
NZ_LT992490.1\|WP_071179065.1\|2638969_2640145_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_LT992490.1\|WP_001087261.1\|2636979_2637537_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_LT992490.1\|WP_174566579.1\|2645811_2647437_+\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_LT992490.1\|WP_000825422.1\|2643907_2645038_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_LT992490.1\|WP_000973532.1\|2656480_2656978_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_LT992490.1\|WP_000035020.1\|2655522_2656332_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NZ_LT992490.1\|WP_142610654.1\|2641407_2642127_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_LT992490.1\|WP_113611148.1\|2642365_2643427_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_LT992490.1\|WP_000124738.1\|2643440_2643713_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_LT992490.1\|WP_001233673.1\|2637872_2638304_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_LT992490.1\|WP_000741914.1\|2637536_2637827_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931

Protein	Function_ID	Function_description	E-value
NZ_LT992490.1\|WP_000725010.1\|2638373_2638976_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.42971e-127
NZ_LT992490.1\|WP_174566580.1\|2649497_2651891_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_LT992490.1\|WP_174566581.1\|2651943_2653239_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	3.92922e-157
NZ_LT992490.1\|WP_000383338.1\|2655131_2655512_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	1.16069e-74
NZ_LT992490.1\|WP_000546918.1\|2648484_2649339_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	7.70901e-154
NZ_LT992490.1\|WP_001243260.1\|2654234_2655050_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	4.52694e-145
NZ_LT992490.1\|WP_071179064.1\|2640376_2641297_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_LT992490.1\|WP_000095771.1\|2653228_2654221_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_LT992490.1\|WP_000954087.1\|2656990_2657464_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	7.45224e-67
NZ_LT992490.1\|WP_071179065.1\|2638969_2640145_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_LT992490.1\|WP_001087261.1\|2636979_2637537_+\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	2.77868e-12
NZ_LT992490.1\|WP_174566579.1\|2645811_2647437_+\|cache-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.01152e-58
NZ_LT992490.1\|WP_000825422.1\|2643907_2645038_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	9.06542e-157
NZ_LT992490.1\|WP_000973532.1\|2656480_2656978_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	6.18348e-92
NZ_LT992490.1\|WP_000035020.1\|2655522_2656332_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	8.17182e-169
NZ_LT992490.1\|WP_142610654.1\|2641407_2642127_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.72054e-111
NZ_LT992490.1\|WP_113611148.1\|2642365_2643427_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_LT992490.1\|WP_000124738.1\|2643440_2643713_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	5.47988e-59
NZ_LT992490.1\|WP_001233673.1\|2637872_2638304_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	3.97459e-66
NZ_LT992490.1\|WP_000741914.1\|2637536_2637827_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	1.27614e-60

>NZ_LT992490.1|WP_000825422.1|2643907_2645038_+|membrane-bound-lytic-murein-transglycosylase-MltC
MKRLGLYLVVVLLLSGCSREAIENMYQVDYEPTNRFAKNLAGMPGQYSKDTDGFDALINSFSGNIEKRWGRDQLKMAGRTNYVKYIDNYLSRSDISFSEGKITVETVSPTDPKAHLRNAIITTLLTPDDPAGVELFSSKNITLANKGEPFLYQQVVDQDKQPIQWSWRANRYADYLIANHLQVKQVGFKKAYYVVIPMVKNQVEIRGNRYADIIRRASRKYDIPEDLILAIIKTESSFNPYAVSWANAYGLMQVVPATAGRDVFRMVKNRPGDPTPEYLFNPENNIDTGTAYFYLLKNHYLKDVRHPLSLEYSMISAYNGGAGGVLNTFHSDRKRAMQDLNSLQPNQVYWALTKKHANAEARRYLEKVTKFKKEFN
>NZ_LT992490.1|WP_000124738.1|2643440_2643713_+|oxidative-damage-protection-protein
MARTVFCTRLQKEADGLDFQLYPGELGKRIFDNICKEAWAQWQTKQTMLINEKKLNMMDPEHRKLLEQEMVNFLFEGKEVHIEGYTPPAK
>NZ_LT992490.1|WP_113611148.1|2642365_2643427_+|A/G-specific-adenine-glycosylase
MTPFAQAILTWYDAYGRKNLPWQQNKNAYRVWLSEIMLQQTQVATVIPYFERFLERFPTVHALAAAPQDEVLHFWTGLGYYARARNLHKAAKMIVSEYGGEFPTDLEQMNALPGVGRSTAAAVLSSVYKKPHAILDGNVKRTLARCFAVEGWPGQKSVENQLWHYAEMHTPKVDVDKYNQAMMDMGAMICTRSKPKCSLCPVESFCLAKQQGNPQEYPGKKPKTDKPVKATWFVMLYHDNAVWLEQRPQSGIWGGLYCFPQSEIANIQTTIDQRAIGDSTITSQQTLIAFRHTFSHYHLDITPILLQLSRKPDIIMEGSKGLWYNLSQPDEIGLAAPVKQLLHSLPFDIDSHI
>NZ_LT992490.1|WP_142610654.1|2641407_2642127_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVITQEYTEDGKVLRRIRSFVRREGRLTKGQEAAMKECWPTMGIDYQPGLLDWQQVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASAREAGVTNLRVMCHDAVEVFAHMIPDNSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLIIGSGVFHMATDWENYAEHMIEVMNQAPGFANLATDGDYIPRPDERPLTKFEQRGHRLGHGVWDIKYQRTA
>NZ_LT992490.1|WP_071179064.1|2640376_2641297_-|glutaminase-B
MKPTAEILASIIEEVRPLIGQGKVADYIPALAKVPSEKLGIAVFTNQGEVITAGDAQEGFSIQSISKVLSLTLAMGLYQPDELWSRVGKEPSGQAFNSLIQLEMEQGIPRNPFINAGAIVVCDMLQSRLSAPRQRLLEFVRQLSGEPLIAYDKIVAASEMMHSDRNAAIAYLMRSFGNFHNEVIPVLHNYFHACALKMSCVELAKTFSYLANKGVSVVTGETVITPTQSKQTNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPALDQSGNSLAGTRALELLAQRIGRSIF
>NZ_LT992490.1|WP_071179065.1|2638969_2640145_+|radical-SAM-family-heme-chaperone-HemW
MLTPPPLSLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDALLQDLDRDIERYQLKGDPRLLHSIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTAGVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQALADLDQAIALNPPHLSWYQLTIEPNTLFYSKPPKLPDEDALWDIFELGHQKLSEAGYVQYEISGYSKLGYQCQHNLNYWRFGDYLGIGCGAHGKLSFTDGRIVRTTKTKHPRGYLAALNNLAKAYLDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWAISEGYLSEDDQHWQITEKGKLFLNDLLEAFMADEEE
>NZ_LT992490.1|WP_000725010.1|2638373_2638976_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLSDFGFDVVAQSEFNVPEAAETGTTFIENAIIKARHAAKITGLPAIADDSGLEVDYLNGAPGIYSARYAGEHASDGDNLNKLLVAMQDVPDDQRSARFHCVLVLMRHADDPTPIVCHGKWEGKILTAPHGSNGFGYDPIFWVPEENCASAELEPVRKKQLSHRGKALQKLFKAIEEQSTC
>NZ_LT992490.1|WP_001233673.1|2637872_2638304_+|DUF4426-domain-containing-protein
MRKWMMSLLLTLLALPASAEQQKTIKDIEVHYSAFNSTFLTPKVASSYQLTRNGYTAILNISVLDRASLGKPATEAKLTGHAKNLIGNLRELSFKQVKEGNAIYYLAEIPISNEEMLTFDIDVDAGLKGAGKLTFSQKFYTEQ
>NZ_LT992490.1|WP_000741914.1|2637536_2637827_+|YggU-family-protein
MAAVWREGDDLLLRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKLCKVAKGSVVIEKGELGRHKQVRILQPSQIPAEIAALIE
>NZ_LT992490.1|WP_001087261.1|2636979_2637537_+|YggT-family-protein
MNSLSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILSWVSQGRSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSILVLFIVLQFANFLMGDVIGPIWYQL
>NZ_LT992490.1|WP_174566579.1|2645811_2647437_+|cache-domain-containing-protein
MKLKTQAYLLSAIILAALLALATTGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEANARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRICRKFAIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELADAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIAHRINMIEESGSKLSRVVMESHNSTQTLTKLSLELEQWAAHFEVTR
>NZ_LT992490.1|WP_000546918.1|2648484_2649339_-|co-chaperone-DjlA
MHIFGKILGAFFGFLFGGPFGAIFGIFLGHQFDKARRLNQAGFQSGTFGAGPSQAERQEDFFKSAFSVMGHVAKAKGQVTKEEIQLATIMMDRMNLTLEQKRAAQDAFRDGKESDFPLEQVLDRVKIATGGRFDLLQFFLELQISSAFADGDVHPSERQVLHRIARGLGFSSEQLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPPSRNQLADAYEVLGVSESASAQEVKRAYRKLMNEHHPDKLMAKGLPPEMMNVAKEKSQQIQHAYELIRKEKGIK
>NZ_LT992490.1|WP_174566580.1|2649497_2651891_+|LPS-assembly-protein-LptD
MPCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNNLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTVNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYSPELMKYLDFDLISHISRFETDVRGKPSATRVHIEPGLKIPFSNTWGSWTTEARLLGTYYQQDLTNVDTSSFIDSNNDGKNDNIYYGLEESVTRVIPEFRSVAGVVLERDTVLLDNYTQTLEPKIQYLFVPEKDQNNIGYYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNDNSKDKESSYSAWAVEMDFNFADYLFYHGGIQYDINGQAVQLGNSTLEYRVASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN
>NZ_LT992490.1|WP_174566581.1|2651943_2653239_+|peptidylprolyl-isomerase-SurA
MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIANNNQQTQEQLITSIAQEGLTYPEFREQIRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEVLKDEKDEQ
>NZ_LT992490.1|WP_000095771.1|2653228_2654221_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLAQRAAQLGIQVKLLDYQPDNPVQAQQAGTLLVEHISLAEPVVAGQLNPANGHYVLKTLERAAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTALVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEDGVLGMEEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ
>NZ_LT992490.1|WP_001243260.1|2654234_2655050_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRIFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPDSKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPSMRPENLTLAQFVALANWLDATHKTHA
>NZ_LT992490.1|WP_000383338.1|2655131_2655512_+|Co2+/Mg2+-efflux-protein-ApaG
MDVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPFRLAVPHVLN
>NZ_LT992490.1|WP_000035020.1|2655522_2656332_+|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MANYIVGDIQGCFDELQQLLKQADFNSQLDTLWFAGDLVARGPKSLETLRFAYQLGDAARVVLGNHDLHLLSVALGHHPAKRRDQTQAILDAPDATQLLDWLRQQPLLAEHKEFVLCHAGISPQWDLTTARQAAQEVESVLRSPKWSTLIEQMYSDQPDTWHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPQEVTDGSLLPWFQLSQRIALEKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA
>NZ_LT992490.1|WP_000973532.1|2656480_2656978_-|type-3-dihydrofolate-reductase
MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMGRKTYQSIGRPLPGRHNIVISRDASLLIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLYAACLPMAHKLYITEIHAKLEGDTQFPEWGSDWLERSREHYPADEKNAYEMDFVIFERQNPLPT
>NZ_LT992490.1|WP_000954087.1|2656990_2657464_-|threonine/serine-exporter-family-protein
MLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCALGGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVPGVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPII

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT992490_1	1.1\|2645327\|37\|NZ_LT992490\|PILER-CR	2645327-2645363	37	NC_049942	Escherichia phage JLK-2012, complete sequence	23524-23560	3	0.919
NZ_LT992490_1	1.1\|2645327\|37\|NZ_LT992490\|PILER-CR	2645327-2645363	37	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35428-35464	4	0.892

1. spacer 1.1|2645327|37|NZ_LT992490|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 3, identity: 0.919

taggtcgccagttcgattccggcagccggcaccattt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.************ *

2. spacer 1.1|2645327|37|NZ_LT992490|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

694364 : 700970

Staphylococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210574.1\|694364_695498_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-64	40.4
WP_000366562.1\|695509_696760_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.0e-100	49.5
WP_000543544.1\|696859_697309_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_029627451.1\|697334_698438_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.5e-44	33.1
WP_000493874.1\|698442_699096_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-31	38.2
WP_001122865.1\|699136_700246_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_000864130.1\|700499_700970_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7

DBSCAN-SWA_2

2017461 : 2088098

uncultured_Caudovirales_phage(20.0%)

tRNA,transposase,integrase

attL 2025123:2025150|attR 2083556:2083583

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029628384.1\|2017461_2018361_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_032480817.1\|2018703_2020827_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-13	35.6
WP_032480818.1\|2021022_2023992_+	EAL domain-containing protein	G3MA91	Bacillus_virus	8.8e-18	33.5
WP_000266180.1\|2024029_2024230_-	hypothetical protein	NA	NA	NA	NA
2025123:2025150	attL	NA	NA	NA	NA
WP_000359330.1\|2025252_2026152_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_000097694.1\|2026191_2027355_-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
WP_000038553.1\|2027608_2029033_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_000066204.1\|2029100_2030204_+	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	1.5e-47	44.1
WP_029628382.1\|2030200_2030665_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_001001302.1\|2030734_2031610_+	CNNM family magnesium/cobalt transport protein CorC	NA	NA	NA	NA
WP_029628381.1\|2031650_2033168_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_001125919.1\|2033223_2033694_-	zinc ribbon-containing protein	NA	NA	NA	NA
WP_001157862.1\|2033823_2036400_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.8e-187	43.3
WP_001246438.1\|2036576_2037191_+	luciferase	NA	NA	NA	NA
WP_001223847.1\|2037196_2038225_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_001161139.1\|2038293_2038611_+	ribosome silencing factor	NA	NA	NA	NA
WP_000701620.1\|2038613_2039084_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_000945981.1\|2039090_2040995_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_000781446.1\|2040991_2042113_+	peptidoglycan glycosyltransferase MrdB	NA	NA	NA	NA
WP_001080122.1\|2042112_2042904_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.5e-20	57.1
WP_000748297.1\|2042995_2044171_+	serine hydrolase	B6DZZ7	Stx2-converting_phage	1.3e-89	47.7
WP_000932180.1\|2044318_2044597_+	YbeD family protein	NA	NA	NA	NA
WP_000431347.1\|2044784_2045435_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_000042593.1\|2045427_2046393_+	lipoyl synthase	NA	NA	NA	NA
WP_001015525.1\|2046588_2046915_+	hypothetical protein	NA	NA	NA	NA
WP_000919130.1\|2047077_2048328_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.4e-97	50.5
WP_000410937.1\|2048668_2049265_+	YitT family protein	NA	NA	NA	NA
WP_001187398.1\|2049414_2049849_-	VanZ family protein	NA	NA	NA	NA
WP_000990927.1\|2049827_2050535_-	hypothetical protein	NA	NA	NA	NA
WP_000147057.1\|2050531_2052745_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_002021173.1\|2052769_2053294_-	polysaccharide export protein	NA	NA	NA	NA
WP_119565014.1\|2053449_2054775_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_174566534.1\|2054767_2056504_+	hypothetical protein	NA	NA	NA	NA
WP_119565122.1\|2056500_2058561_+	hypothetical protein	A0A2H4J185	uncultured_Caudovirales_phage	2.6e-13	25.1
WP_119565121.1\|2058563_2059022_+	hypothetical protein	NA	NA	NA	NA
WP_119565087.1\|2063141_2063996_+	co-chaperone YbbN	NA	NA	NA	NA
WP_174566535.1\|2064056_2067821_-	BCSC C-terminal domain-containing protein	NA	NA	NA	NA
WP_005382071.1\|2067811_2068918_-	cellulase	NA	NA	NA	NA
WP_119565089.1\|2068917_2071203_-	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA
WP_119565090.1\|2071192_2073826_-	UDP-forming cellulose synthase catalytic subunit	NA	NA	NA	NA
WP_119565091.1\|2073829_2074609_-	cellulose synthase operon protein YhjQ	NA	NA	NA	NA
WP_119565092.1\|2074605_2074803_-	hypothetical protein	NA	NA	NA	NA
WP_118119227.1\|2076181_2077765_+	cellulose biosynthesis protein BcsE	NA	NA	NA	NA
WP_020840228.1\|2077761_2077938_+	hypothetical protein	NA	NA	NA	NA
WP_174566536.1\|2077937_2079563_+	cellulose biosynthesis protein BcsG	NA	NA	NA	NA
WP_100269006.1\|2079648_2080771_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.9e-26	31.8
WP_020433901.1\|2081099_2081474_+	hypothetical protein	NA	NA	NA	NA
WP_119565093.1\|2081470_2081797_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_119565094.1\|2081912_2083511_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_119565095.1\|2086363_2086669_-	hypothetical protein	NA	NA	NA	NA
2083556:2083583	attR	NA	NA	NA	NA
WP_100269006.1\|2086974_2088098_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.9e-26	31.8

DBSCAN-SWA_3

2258866 : 2266059

Anguillid_herpesvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162850.1\|2258866_2259295_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4
WP_002031209.1\|2259498_2260788_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	6.5e-34	34.0
WP_000872176.1\|2261007_2261202_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_001124189.1\|2261250_2261589_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_029628558.1\|2261602_2263453_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.1e-106	41.2
WP_029628557.1\|2263476_2263992_-	co-chaperone HscB	NA	NA	NA	NA
WP_000301573.1\|2264040_2264364_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_000331703.1\|2264424_2264808_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000775253.1\|2264844_2266059_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.5

DBSCAN-SWA_4

2582692 : 2589917

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002031018.1\|2582692_2583580_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	9.2e-56	40.8
WP_002031016.1\|2583847_2586436_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.9e-33	23.0
WP_000116733.1\|2586529_2587537_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.8e-35	34.2
WP_000177566.1\|2587610_2588546_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	7.8e-05	34.7
WP_000002982.1\|2588545_2589172_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	52.1
WP_000698379.1\|2589164_2589917_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.0e-69	53.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT992491

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT992491_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT992491_1

837677-837760

Orphan

I-F

Consensus_repeat	Method
TAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT992491_1

>merge|NZ_LT992491|1|837677-837760|CRISPRCasFinder
TAAGCTGCCTGTGCGGCAGTGAACGAAACCAATCGCTTCAAGCTCTTGGATTGCACTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LT992491|1|1|837677-837760|CRISPRCasFinder
TAAGCTGCCTGTGCGGCAGTGAAC	GAAACCAATCGCTTCAAGCTCTTGGATTGCACTTTC
TAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT992491.1\|WP_032472129.1\|840810_841029_-\|DUF3709-domain-containing-protein	unknown	unknown	gnl\|CDD\|289275
NZ_LT992491.1\|WP_000246256.1\|829620_829893_+\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|226860
NZ_LT992491.1\|WP_080006745.1\|836491_836728_-\|DUF3709-domain-containing-protein	unknown	unknown	gnl\|CDD\|289275
NZ_LT992491.1\|WP_050485209.1\|842502_842823_-\|DUF645-family-protein	unknown	unknown	gnl\|CDD\|282699
NZ_LT992491.1\|WP_084998671.1\|841375_841558_-\|DUF645-family-protein	unknown	unknown	gnl\|CDD\|282699
NZ_LT992491.1\|WP_000221354.1\|843663_843951_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_LT992491.1\|WP_161768779.1\|839170_839419_-\|DUF3709-domain-containing-protein	unknown	unknown	gnl\|CDD\|289275
NZ_LT992491.1\|WP_113606171.1\|830909_832336_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_LT992491.1\|WP_000982259.1\|829889_830387_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_LT992491.1\|WP_000479758.1\|833176_833635_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_LT992491.1\|WP_029628680.1\|835387_835774_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_LT992491.1\|WP_029628724.1\|839670_840540_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_001107720.1\|841926_842169_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|281658
NZ_LT992491.1\|WP_128974310.1\|834372_834411_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_001250180.1\|843940_844192_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_LT992491.1\|WP_000802134.1\|842165_842465_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_LT992491.1\|WP_029628681.1\|834909_835092_-\|DUF645-family-protein	unknown	unknown	gnl\|CDD\|282699
NZ_LT992491.1\|WP_080006744.1\|834429_834555_-\|DUF645-family-protein	unknown	unknown	gnl\|CDD\|282699
NZ_LT992491.1\|WP_000048762.1\|838570_838855_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_LT992491.1\|WP_113606175.1\|836880_837021_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509

Protein	Function_ID	Function_description	E-value
NZ_LT992491.1\|WP_000246256.1\|829620_829893_+\|DUF1778-domain-containing-protein	gnl\|CDD\|226860	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown].	6.9281e-22
NZ_LT992491.1\|WP_080006745.1\|836491_836728_-\|DUF3709-domain-containing-protein	gnl\|CDD\|289275	pfam12493, DUF3709, Protein of unknown function (DUF3709). This domain family is found in bacteria, and is approximately 30 amino acids in length. There are two conserved sequence motifs: RCLMK and LIEL.	3.16903e-07
NZ_LT992491.1\|WP_050485209.1\|842502_842823_-\|DUF645-family-protein	gnl\|CDD\|282699	pfam04875, DUF645, Protein of unknown function, DUF645. This family includes several uncharacterized proteins from Vibrio cholerae. There is some doubt regarding the existence of these proteins, they are encoded by open reading frames contained within a repeated region in the Vibrio superintegron.	6.35184e-06
NZ_LT992491.1\|WP_084998671.1\|841375_841558_-\|DUF645-family-protein	gnl\|CDD\|282699	pfam04875, DUF645, Protein of unknown function, DUF645. This family includes several uncharacterized proteins from Vibrio cholerae. There is some doubt regarding the existence of these proteins, they are encoded by open reading frames contained within a repeated region in the Vibrio superintegron.	5.21789e-29
NZ_LT992491.1\|WP_000221354.1\|843663_843951_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	8.11754e-23
NZ_LT992491.1\|WP_161768779.1\|839170_839419_-\|DUF3709-domain-containing-protein	gnl\|CDD\|289275	pfam12493, DUF3709, Protein of unknown function (DUF3709). This domain family is found in bacteria, and is approximately 30 amino acids in length. There are two conserved sequence motifs: RCLMK and LIEL.	8.60873e-10
NZ_LT992491.1\|WP_113606171.1\|830909_832336_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.61311e-42
NZ_LT992491.1\|WP_000982259.1\|829889_830387_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.29316e-07
NZ_LT992491.1\|WP_000479758.1\|833176_833635_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	2.97287e-06
NZ_LT992491.1\|WP_029628680.1\|835387_835774_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	4.5231e-26
NZ_LT992491.1\|WP_032472129.1\|840810_841029_-\|DUF3709-domain-containing-protein	gnl\|CDD\|289275	pfam12493, DUF3709, Protein of unknown function (DUF3709). This domain family is found in bacteria, and is approximately 30 amino acids in length. There are two conserved sequence motifs: RCLMK and LIEL.	1.831e-08
NZ_LT992491.1\|WP_001107720.1\|841926_842169_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|281658	pfam03693, ParD_antitoxin, Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH. ParD is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is ParE in, pfam05016. The family contains several related antitoxins from Cyanobacteria, Proteobacteria and Actinobacteria. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all type II antitoxins.	7.7649e-38
NZ_LT992491.1\|WP_001250180.1\|843940_844192_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.77824e-16
NZ_LT992491.1\|WP_000802134.1\|842165_842465_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.2393e-27
NZ_LT992491.1\|WP_029628681.1\|834909_835092_-\|DUF645-family-protein	gnl\|CDD\|282699	pfam04875, DUF645, Protein of unknown function, DUF645. This family includes several uncharacterized proteins from Vibrio cholerae. There is some doubt regarding the existence of these proteins, they are encoded by open reading frames contained within a repeated region in the Vibrio superintegron.	8.40718e-27
NZ_LT992491.1\|WP_080006744.1\|834429_834555_-\|DUF645-family-protein	gnl\|CDD\|282699	pfam04875, DUF645, Protein of unknown function, DUF645. This family includes several uncharacterized proteins from Vibrio cholerae. There is some doubt regarding the existence of these proteins, they are encoded by open reading frames contained within a repeated region in the Vibrio superintegron.	3.35701e-17
NZ_LT992491.1\|WP_000048762.1\|838570_838855_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	8.10797e-13
NZ_LT992491.1\|WP_113606175.1\|836880_837021_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.00176152

>NZ_LT992491.1|WP_113606175.1|836880_837021_-|DUF3265-domain-containing-protein
MKFKHNKRFKRDSQRAAFLLCVGFCVYDVMRKLGSGVVCPLTGRYA
>NZ_LT992491.1|WP_080006745.1|836491_836728_-|DUF3709-domain-containing-protein
MVGSSRFEQFGAFTYGLKVCRQFSIVLCCLMKRQSVFRCKFQCYCLIEFSRPYVVSEFVGEVFNIGLVAKWKPALVSS
>NZ_LT992491.1|WP_029628680.1|835387_835774_-|MmcQ/YjbR-family-DNA-binding-protein
MNHDEFNQFCRSFPATTYVVQWGGSHVWKVAGKVFSIGSIGKDQQPVFTFKTSDLNFEYLSEHDGYIPAPYFANRGMKWIQQTETSGVLDEELKYYLSESYRLVVLGLSKRLQKELGITSRADGESAS
>NZ_LT992491.1|WP_029628681.1|834909_835092_-|DUF645-family-protein
MLSDIQHGKFGFTKGSIIAVSLLSLSRTLNRGQLNLDRFEFWLLTSQLLAFDVCFCDAFE
>NZ_LT992491.1|WP_080006744.1|834429_834555_-|DUF645-family-protein
MLSDIQHGKFGFTKGSIIAVSLLSLSRTLNRGQLNLDRFDI
>NZ_LT992491.1|WP_128974310.1|834372_834411_-|hypothetical-protein
MASDVCMFDAFA
>NZ_LT992491.1|WP_000479758.1|833176_833635_-|GNAT-family-N-acetyltransferase
MFLRKAEPFELDTIYSMGFDVWNGGRSFQEYLVNCQNSKKYQAGTWYVLVDGERIVSSLIVYSGLFGLQEGCFGIGSLVTAPELRHRGYGSQLVGLMKAELLNAPSCKAIYLHSDIGRKYYEDLGFFSINDSDCLCVSKDQSHFENPIPTYF
>NZ_LT992491.1|WP_113606171.1|830909_832336_+|IS66-family-transposase
MSRKKAPKFQEEPPVASDLNEANALIEELWEQLRHLTDKQATNSKNSSKPPSSDNPKDKHERKKNQSSGGRNSRGAKEGHTGHQRKLSRLKTTDVVIDCFPEVCPCCAQSDIDIQGGPYYRHQVFDIPKPTVDITEYRLFSGQCRHCKETVKAQKPDNASQGIIGPNLLSYIGVLAGQYHLSVRKIQSLLKEQLGTTFSVGAISEAQTKVASMLTPLHQAIKQALKKAPLIHADETSHHRNDEQSLRWCWLVASDDLVYEQILYSRSTSSAKKVIDENYTGIVVSDQCPSYNWIAADRHQLCWAHVKRNLQQMADYSGGGHTAYIGRHLCLLTNVLFHTRHRYEQGELDYSRYLRRMHRLQKSFDHWLSKGTGVMVKRYRGRCKLLLKHRESLWVFLKKTSIPLTNNEAERCIRGFVIQRKISFGTTSDAGDKFRSRIHTLIETCKKRGLSAMSVLSEIITSVVEKKPYPNVFDL
>NZ_LT992491.1|WP_000982259.1|829889_830387_+|GNAT-family-N-acetyltransferase
MMNTVLLDKDKHDRNRFNCGTEALNNYLKVMASQQAKKDNTRTFVLEDDNNSAYIIGFYTLTMTPIDLKALPDKLQKKHQSSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADIRAGLG
>NZ_LT992491.1|WP_000246256.1|829620_829893_+|DUF1778-domain-containing-protein
MATTLPRITARVDVDTQDLLTKAAALAGMSSINSFVLNAAIEKAKQVIEREQALKLSQVDAVLLMEALDNPAVANAKLKLASERYESKTQ
>NZ_LT992491.1|WP_000048762.1|838570_838855_-|antibiotic-biosynthesis-monooxygenase
MSKVILKGFIVVPKAELTAVINELDNHIRFTRLEDGCLIFEVTQNEENPYRFDVYEEFRDQAAFDKHQLRVKSSTWGKVSANVERNYEVTVSCA
>NZ_LT992491.1|WP_161768779.1|839170_839419_-|DUF3709-domain-containing-protein
MLSDCLIGVLSPREVSFALSSRFEQFGAFTYRLKISRQLSIVLRCLMKRQCVCRCKFQCYCLIELSCPCVVSEFVGEGFHIG
>NZ_LT992491.1|WP_029628724.1|839670_840540_-|hypothetical-protein
MNSKLPFRKLKKNLVASAVEKAILDSFNKDERYHYIKKSVPELKSLSIPVAYKKISKVLYANEIEPPISKQGHESSTVLGSTGEALTELILPPREELPVNNRGYDLDHDNALIEIKATVAESVALSNVQYYTAQYLVIHVYEKFSDKHRFAYLIPLKILRAIKGRKLGNVSINLFKENWVDFFKVTFVRLSQFFQVRRMYLDGNYNSLVEYRYRSLLDREVVSRGVYVTSLFNHYEKCGSWKWERRYAYYEYYHNSIHWHYQYNSLSNVYNLGLYAVYHDNRWKRRVVR
>NZ_LT992491.1|WP_032472129.1|840810_841029_-|DUF3709-domain-containing-protein
MSFALSSRFEQFGAFTYRLKVSRQLSIVLRCLMKQQYVSRFKFQRHCLIELSRQCVVSWFVGEGLHIGLVAK
>NZ_LT992491.1|WP_084998671.1|841375_841558_-|DUF645-family-protein
MLSDIQHGKFGFTKGSIIAVSLLSLSRTLNRGQLNLDRFEFWLLTSQLLALDVCMFDTFA
>NZ_LT992491.1|WP_001107720.1|841926_842169_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MAKNTSITLGEHFDGFITSQIQSGRYGSASEVIRSALRLLENQETKLQSLRQLLVEGEQSGDADYDLDSFINELDSENIR
>NZ_LT992491.1|WP_000802134.1|842165_842465_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKPFNLTVAAKADLRDIALFTQRRWGKEQRNVYLKQFDDSFWLLAENPDIGKSCDEIREGYRKFPQGSHVIFYQQIGSQQIRVIRILHKSMDVNPIFGA
>NZ_LT992491.1|WP_050485209.1|842502_842823_-|DUF645-family-protein
MLLGVQRGQLGFTKGCIVAEIVLSLLEIRLLANLTLNAMSFGSLLHSFWRWTCVCSMHLRKIIFKQMCLKSHCETIGYEANKRLKRDCQRAAFPVPMSRGGYGCCV
>NZ_LT992491.1|WP_000221354.1|843663_843951_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTYKLKFLPAAQKEWSKLAPTIQSQFKKKLKERLENPHVPSAKLRGYDAVYKIKLRTAGYRLAYEVIDDEIVVYVLAVGKRDKDAVYKKLASRFG
>NZ_LT992491.1|WP_001250180.1|843940_844192_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MRQVLANCSASISELKKNPTALLNEADGSAIAILNHNKPAAYLVPAETYEYLIDMLDDYELSQIVDSRRADLSQAVEVNIDDL

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Crispr_ID: NZ_LT992491_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT992491_2

851820-852447

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

10 spacers

The CRISPR arrays of NZ_LT992491_2

>merge|NZ_LT992491|2|851820-852447|PILER-CR,CRISPRCasFinder,CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAACGAAATACTCAATCGTGATGTCGAAACTCTGACTTTCTAAGCTGCCTGTGCGGCAGTGAACGCAGATTGATGAAATTTTACGCACTGAGGATTTTTCTAAGCTGCCTGTGCGGCAGTGAACTCCCCCCTCACTCTTCTATGTATTTAGTTAACTTTCTAAGCTGCCTGTGCGGCAGTGAACCCAGCAAGATCACCATTTTTAATAAATCTACGTTTCTAAGCTGCCTGTGCGGCAGTGAACTTAGCTATTACAACTCATCATCTAGCGTGCTATTTCTAAGCTGCCTGTGCGGCAGTGAACAGGGTGAGTACGACTTCACTATCGGCCTGAAATTTCTAAGCTGCCTGTGCGGCAGTGAACAATACGAGAATTTTATCCCTATCGCCCTAAAATTTCTAAGCTGCCTGTGCGGCAGTGAACACAATCATCGGCGTTGGTGATAGTATCGTGCATTTCTAAGCTGCCTGTGCGGCAGTGAACCTAATAAAGGAACGGTTGAAAATTTAGAGGATTTTCTAAGCTGCCTGTGCGGCAGTGAACCCCGAGAGCACCAAGGGCGGGGCTGGCCCGTTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LT992491|2|1|851820-852447|PILER-CR
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	GAAATACTCAATCGTGATGTCGAAACTCTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAGATTGATGAAATTTTACGCACTGAGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCCCCCTCACTCTTCTATGTATTTAGTTAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCAGCAAGATCACCATTTTTAATAAATCTACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAGCTATTACAACTCATCATCTAGCGTGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGGGTGAGTACGACTTCACTATCGGCCTGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATACGAGAATTTTATCCCTATCGCCCTAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACAATCATCGGCGTTGGTGATAGTATCGTGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTAATAAAGGAACGGTTGAAAATTTAGAGGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCCGAGAGCACCAAGGGCGGGGCTGGCCCGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LT992491|2|2|851820-852447|CRISPRCasFinder
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	GAAATACTCAATCGTGATGTCGAAACTCTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAGATTGATGAAATTTTACGCACTGAGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCCCCCTCACTCTTCTATGTATTTAGTTAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCAGCAAGATCACCATTTTTAATAAATCTACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAGCTATTACAACTCATCATCTAGCGTGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGGGTGAGTACGACTTCACTATCGGCCTGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATACGAGAATTTTATCCCTATCGCCCTAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACAATCATCGGCGTTGGTGATAGTATCGTGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTAATAAAGGAACGGTTGAAAATTTAGAGGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCCGAGAGCACCAAGGGCGGGGCTGGCCCGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LT992491|2|1|851820-852447|CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	GAAATACTCAATCGTGATGTCGAAACTCTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAGATTGATGAAATTTTACGCACTGAGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCCCCCTCACTCTTCTATGTATTTAGTTAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCAGCAAGATCACCATTTTTAATAAATCTACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAGCTATTACAACTCATCATCTAGCGTGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGGGTGAGTACGACTTCACTATCGGCCTGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATACGAGAATTTTATCCCTATCGCCCTAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACAATCATCGGCGTTGGTGATAGTATCGTGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTAATAAAGGAACGGTTGAAAATTTAGAGGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCCGAGAGCACCAAGGGCGGGGCTGGCCCGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT992491.1\|WP_172774901.1\|850281_850386_-\|DUF3709-domain-containing-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_080006741.1\|850090_850288_-\|DUF3709-domain-containing-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_161768776.1\|854364_854625_-\|DUF3709-domain-containing-protein	unknown	unknown	gnl\|CDD\|289275
NZ_LT992491.1\|WP_000861987.1\|850841_851099_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_LT992491.1\|WP_029628683.1\|853703_854087_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_084988704.1\|852711_853533_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_080281183.1\|856915_857143_-\|cysteine-rich-CWC-family-protein	unknown	unknown	gnl\|CDD\|379586
NZ_LT992491.1\|WP_029628792.1\|847347_847773_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_029628682.1\|856003_856744_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_029628685.1\|851346_851628_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_113606188.1\|855867_855969_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_LT992491.1\|WP_084997917.1\|854760_854871_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_LT992491.1\|WP_174566676.1\|857625_857805_-\|DUF645-family-protein	unknown	unknown	gnl\|CDD\|282699
NZ_LT992491.1\|WP_029628791.1\|848700_849240_-\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NZ_LT992491.1\|WP_029628793.1\|848007_848526_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_001894457.1\|849548_849776_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|225850
NZ_LT992491.1\|WP_029628805.1\|846647_847187_-\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NZ_LT992491.1\|WP_000818171.1\|850551_850854_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_LT992491.1\|WP_113620335.1\|854618_854801_-\|DUF3709-domain-containing-protein	unknown	unknown	unknown
NZ_LT992491.1\|WP_148496366.1\|854878_855802_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376162

Protein	Function_ID	Function_description	E-value
NZ_LT992491.1\|WP_113606188.1\|855867_855969_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.00281489
NZ_LT992491.1\|WP_161768776.1\|854364_854625_-\|DUF3709-domain-containing-protein	gnl\|CDD\|289275	pfam12493, DUF3709, Protein of unknown function (DUF3709). This domain family is found in bacteria, and is approximately 30 amino acids in length. There are two conserved sequence motifs: RCLMK and LIEL.	3.34974e-06
NZ_LT992491.1\|WP_029628805.1\|846647_847187_-\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	7.08796e-58
NZ_LT992491.1\|WP_029628791.1\|848700_849240_-\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.54681e-58
NZ_LT992491.1\|WP_080281183.1\|856915_857143_-\|cysteine-rich-CWC-family-protein	gnl\|CDD\|379586	pfam14375, Cys_rich_CWC, Cysteine-rich CWC. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 74 and 102 amino acids in length. It contains eight conserved cysteines, including a conserved CWC sequence motif.	2.24765e-07
NZ_LT992491.1\|WP_001894457.1\|849548_849776_-\|DUF1289-domain-containing-protein	gnl\|CDD\|225850	COG3313, COG3313, Predicted Fe-S protein [General function prediction only].	4.07073e-17
NZ_LT992491.1\|WP_000861987.1\|850841_851099_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	3.84264e-13
NZ_LT992491.1\|WP_000818171.1\|850551_850854_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	7.4284e-19
NZ_LT992491.1\|WP_174566676.1\|857625_857805_-\|DUF645-family-protein	gnl\|CDD\|282699	pfam04875, DUF645, Protein of unknown function, DUF645. This family includes several uncharacterized proteins from Vibrio cholerae. There is some doubt regarding the existence of these proteins, they are encoded by open reading frames contained within a repeated region in the Vibrio superintegron.	6.71442e-27
NZ_LT992491.1\|WP_084997917.1\|854760_854871_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	8.39024e-06
NZ_LT992491.1\|WP_148496366.1\|854878_855802_-\|hypothetical-protein	gnl\|CDD\|376162	pfam18739, HEPN_Apea, Apea-like HEPN. Apea-like HEPN nuclease. In epsilonproteobacteria embedded in R-M operons.	1.19214e-13

>NZ_LT992491.1|WP_029628685.1|851346_851628_-|hypothetical-protein
MNVDKAKKRILKRVQRGFRGYPQISLEYFGETTDLATEVVITFVPEENAEPQIQRFTSDKDVREDEAIQSVLLKIIERAEAATVLESREISVI
>NZ_LT992491.1|WP_000861987.1|850841_851099_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRMSKWLK
>NZ_LT992491.1|WP_000818171.1|850551_850854_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAEIVWTEPALSDLNDIAEYIALENVVAAKQLVQTIFTKVERLADFPESGRIPPELEHLNYREVVVNPCRVFYKYDDANVRILFVMRAERDLRRLMLTKQ
>NZ_LT992491.1|WP_172774901.1|850281_850386_-|DUF3709-domain-containing-protein
MFVDSLGISFRFCRQFNIVCRCLMKRQCVWRCKF
>NZ_LT992491.1|WP_080006741.1|850090_850288_-|DUF3709-domain-containing-protein
MLSCCLIRFLSLREVRLVGSSRFEQSGAFTYRLEVCRQLSIVFHCLMKQQCVYRCMFQRDCLIEL
>NZ_LT992491.1|WP_001894457.1|849548_849776_-|DUF1289-domain-containing-protein
MCFSEKFSQLCAYNSDVRCTMSENQKVKRAEPIETCSYKSPCVRHCCLDDKDICIGCGRTLDEICCWSSATNSEK
>NZ_LT992491.1|WP_029628791.1|848700_849240_-|hydrolase
MLDKENTGLIIVDIQGKLARLVSDSNELVSNCIKLIKGAQLLGLPIVWLEQNPDKLGQTIEELRVLLGNQQPISKFSFDACGEPRFIETIQKSNKTSWLICGIEAHICVYQTAIHLKNLGYDIHLVSDCVSSRDASNKELAITKLAGAGVEITGLEMSLYELVKDCRAPEFKGILNLIK
>NZ_LT992491.1|WP_029628793.1|848007_848526_-|hypothetical-protein
MPDTWSLITGIVGLLSFLMAVNDKFANLKRFTIPLACALVGFAVGRLSYVGSMGSVSSDGSLGVISIIVVTLLVITAITYLFIKVGQDGFAYIVFIMGATMLPSKFVDSYNNSMDKLSYNDYIQLSQVKLSNSDYDSAIRLLKLAKEKADNSVVKAEISSRIDEVYKKSVSL
>NZ_LT992491.1|WP_029628792.1|847347_847773_-|hypothetical-protein
MKKSLMVLTMLVALVGCEDATKAIDEAQAAANKAVDSLQQKADSLNLKDLNLDVLGDATQKAQEFTQSIDSLINTDFTNHQAVVAATEKISNSYSCLVDVSSEATAENLLDKIVSSVKNDQVLAIIEKGVAQAKTAKECVM
>NZ_LT992491.1|WP_029628805.1|846647_847187_-|hydrolase
MLDKENTGLIIVDIQGKLARLVSDSNELVSNCIKLIKGAQLLGLPIVWLEQNPDKLGQTIEELRVLLGNQQPISKFSFDACGEPRFIETIQKSNKTSWLICGIEAHICVYQTAIHLKNLGYNIHLVSDCVSSRDASNKELAITKLVGAGVEITGLEMSLYELVKDCRAPEFKGILNLIK
>NZ_LT992491.1|WP_084988704.1|852711_853533_-|hypothetical-protein
MKKIYFLDRNAISEIKKSVDGAKTDLSRLRTLKNLDKKGNIISGMLSIREGQSKRLETSEQIVHTIEKDLPYLKQFYKTARTDGDFFIENKEFTGECFGHAEGKELNWDIYIKFINYVQGILYQPIKFSNRLEYAKKIILESKSLGMPKGHLIVGCALASLYGNQSAKKILKSKPGMSPQKAEEAAYNSLSDLLCLTRVLYTQAHVGTDYLVRFLTFDIALHEFFKSIKINRFSPIFNGYESGVFTDLGFSKKIFSEIDDQEFEELSRIILNT
>NZ_LT992491.1|WP_029628683.1|853703_854087_-|hypothetical-protein
MDILTALKNVEALANGIDPISGEVLPESSPYNNPEVIRSLFTVIDAVKQPKKGKKSVEQKQEENISKGLPKNAGLPWSEEERENLANAFNAETSIDELSEIHGRTNGAIISELKKQGLIEEFEATSI
>NZ_LT992491.1|WP_161768776.1|854364_854625_-|DUF3709-domain-containing-protein
MLSDCLIGFLSPREVSFALSSRFVQFGAFTYGLKVRRQLSIVFRCLMKRQCVCCCMYQCDCLIELSCPCVVSWFVGEVFLIGLVAK
>NZ_LT992491.1|WP_113620335.1|854618_854801_-|DUF3709-domain-containing-protein
MYAGASVLRCSHLNRALCLIHKNQLVVIVDSFGISFRFCRQFNIVFRCLMKQQCVWRCKF
>NZ_LT992491.1|WP_084997917.1|854760_854871_-|DUF3265-domain-containing-protein
MTNCLRVIRNAWHFCYALHLVFTVVCGSFGIALLTP
>NZ_LT992491.1|WP_148496366.1|854878_855802_-|hypothetical-protein
MEYMALLGNVDRSILKIDFGEGFRVESVNVDEFVQFCEEHFLFSDVENKIRYPWNCLPDYSERQSTKVFVIRKHFEDYPTYDGCWGDLDERIHNFSKESAFEKSVSDYINHKLNLLRLFNDGDIKCVFESYYQVHDGEIEPMSGRECGDSSRDMTFSLFHYDYNGINAFLREHPLDSLPKYLKFALSNFEKSYFTNHNEFDFLALMIALEAIFNDAKSELTLRVSRGCAVLLTNNETDAQKLFKQVKEFYDKRSKLVHTGDVSTITITDVHELRFIVSRALLKTMELNLSKQDLSARLLMKGFNECW
>NZ_LT992491.1|WP_113606188.1|855867_855969_-|DUF3265-domain-containing-protein
MYWYTVNITNASRRIRNAWHFYNALVLVIKVVC
>NZ_LT992491.1|WP_029628682.1|856003_856744_+|hypothetical-protein
MITDNAAARLLKILDEGKSINPNYPTKQAWGRIFKLENIDTSTEAQSTLMSKLGQVMLLPHETITLVEQYYPTQAPALNHTLAQIQAAFVSQNLSGKWVTFIQHIDTHCINALSMTAALLENKLETKVIDTEKLDNFRAKVQELIEQTIKSDLTSEFKKFMTHYLQKILNAINDYLISGAMPILDAVEATLGHAVLDPSFKEELKESETGQKIRAMLGDLANIVTVAAGAAGAVGYITKNGLPFLG
>NZ_LT992491.1|WP_080281183.1|856915_857143_-|cysteine-rich-CWC-family-protein
MKYRAFHPDPLSCPLCGETNSCVNQGDKDVAKLCWCNDPTITFPEELLSQIPFNRRGKACVCKSCALQFQSSKHD
>NZ_LT992491.1|WP_174566676.1|857625_857805_-|DUF645-family-protein
MLDVLLGKFGFTKGSIIAVILLSLSRALNRGQLNLYCFEFWQSTSQLLALDVCLFDAFA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT992491_2	2.1\|851848\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	851848-851879	32	NZ_CP049915	Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence	37374-37405	1	0.969
NZ_LT992491_2	2.7\|852208\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852208-852239	32	NZ_CP053818	Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence	67549-67580	2	0.938
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	AP014342	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S37-C78, * SEQUENCING IN PROGRESS *	4262-4293	7	0.781
NZ_LT992491_2	2.8\|852268\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852268-852299	32	NC_017971	Pseudomonas phage tf complete genome	14900-14931	7	0.781
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MN694094	Marine virus AFVG_250M290, complete genome	5376-5407	8	0.75
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	NZ_CP039344	Acinetobacter baumannii strain TG31302 plasmid pTG31302, complete sequence	54532-54563	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	NZ_CP015326	Bacillus filamentosus strain Hbe603 plasmid pBEH4, complete sequence	46993-47024	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	31769-31800	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	NZ_CP039342	Acinetobacter baumannii strain TG31986 plasmid pTG31986, complete sequence	8671-8702	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	NZ_CP039932	Acinetobacter baumannii strain TG29392 plasmid pTG29392_2, complete sequence	39659-39690	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475772	Uncultured crAssphage clone G0636S polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MW067001	CrAssphage sp. C0521BW15, complete genome	11014-11045	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475779	Uncultured crAssphage clone J0621H polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MK415404	CrAssphage FA1-2_000172F, complete genome	67417-67448	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475783	Uncultured crAssphage clone B0605S polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475771	Uncultured crAssphage clone E0639H polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475816	Uncultured crAssphage clone CRC_S1 polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475810	Uncultured crAssphage clone CRB_ENV2 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475781	Uncultured crAssphage clone H0593S2 polymerase gene, partial cds	652-683	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MK238400	CrAssphage ZA, complete genome	10809-10840	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MW067000	CrAssphage sp. C0521BD4, complete genome	11014-11045	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475814	Uncultured crAssphage clone CRBF_ENV2A polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475822	Uncultured crAssphage clone CRC_S3 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475812	Uncultured crAssphage clone CRB_ENV1B polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475776	Uncultured crAssphage clone E0626S polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475789	Uncultured crAssphage clone D0618H polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475766	Uncultured crAssphage clone D0618H polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475821	Uncultured crAssphage clone CRBF_ENV1B polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475777	Uncultured crAssphage clone B0611S polymerase gene, partial cds	661-692	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475769	Uncultured crAssphage clone B0600H polymerase gene, partial cds	661-692	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MK415403	CrAssphage ES_ALL_000190F, complete genome	68160-68191	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MK415410	CrAssphage YS1-2_2437, complete genome	69800-69831	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475768	Uncultured crAssphage clone B0601S polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	KX342788	Uncultured phage crAssphage clone ICD-96 polymerase (P) gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475787	Uncultured crAssphage clone B0608S polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475820	Uncultured crAssphage clone CRD_S3 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475767	Uncultured crAssphage clone F0637S polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475811	Uncultured crAssphage clone CRB_ENV3 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475782	Uncultured crAssphage clone C0645H polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475785	Uncultured crAssphage clone B0601H polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475770	Uncultured crAssphage clone B0600S polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MK250029	Prevotella phage Lak-C1, complete genome	91935-91966	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475813	Uncultured crAssphage clone CRA_S1 polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475788	Uncultured crAssphage clone B0608H polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475815	Uncultured crAssphage clone CRC_S2 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475778	Uncultured crAssphage clone J0621S polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MW067002	CrAssphage sp. C0526BW15, complete genome	10696-10727	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	KX342787	Uncultured phage crAssphage clone ICD-53 polymerase (P) gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475784	Uncultured crAssphage clone B0611H polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475774	Uncultured crAssphage clone G0636H polymerase gene, partial cds	652-683	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475823	Uncultured crAssphage clone CRD_S2 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475773	Uncultured crAssphage clone C0616S polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475775	Uncultured crAssphage clone E0626H polymerase gene, partial cds	652-683	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475817	Uncultured crAssphage clone CRE_ENV2 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475786	Uncultured crAssphage clone B0609S polymerase gene, partial cds	652-683	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475818	Uncultured crAssphage clone CRE_S2 polymerase gene, complete cds	1762-1793	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475819	Uncultured crAssphage clone CRD_ENV3 polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT006214	CrAssphage LMMB, complete genome	10356-10387	10	0.688
NZ_LT992491_2	2.4\|852028\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852028-852059	32	MT475824	Uncultured crAssphage clone CRD_S5B polymerase gene, partial cds	691-722	10	0.688
NZ_LT992491_2	2.9\|852328\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852328-852359	32	NC_013390	Staphylococcus epidermidis plasmid SAP108B, complete sequence	430-461	10	0.688
NZ_LT992491_2	2.10\|852388\|32\|NZ_LT992491\|PILER-CR,CRISPRCasFinder,CRT	852388-852419	32	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	126924-126955	11	0.656

1. spacer 2.1|851848|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049915 (Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

gaaatactcaatcgtgatgtcgaaactctgac	CRISPR spacer
gaaatactcaatcgtgatgtcgatactctgac	Protospacer
*********************** ********

2. spacer 2.7|852208|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053818 (Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence) position: , mismatch: 2, identity: 0.938

aatacgagaattttatccctatcgccctaaaa	CRISPR spacer
aatacgagaattttatccctatcgacttaaaa	Protospacer
************************ *.*****

3. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to AP014342 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S37-C78, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ccagcaagatcaccatttttaataaa-tctacg	CRISPR spacer
ggatcaagaccacgatttttaataaattctat-	Protospacer
  * *****.*** ************ ****.

4. spacer 2.8|852268|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NC_017971 (Pseudomonas phage tf complete genome) position: , mismatch: 7, identity: 0.781

acaatcatcggcgttggtgatagtatcgtgca-	CRISPR spacer
gaaatcatcggcgttggtggtggtactg-gcat	Protospacer
. *****************.*.***..* ***

5. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MN694094 (Marine virus AFVG_250M290, complete genome) position: , mismatch: 8, identity: 0.75

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
taagcaagatcacctattttaataacttgacc	Protospacer
. ************  ********* *. **

6. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039344 (Acinetobacter baumannii strain TG31302 plasmid pTG31302, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
ttagaaaaatcaccatttttaataatattgtc	Protospacer
..** **.*****************  .*..

7. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015326 (Bacillus filamentosus strain Hbe603 plasmid pBEH4, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
gaaacaagatcacctttcttaataaattcgac	Protospacer
  *.********** **.*********...

8. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
tccctgggattaccatttgtaataaatctaaa	Protospacer
.*  ...***.******* *********** .

9. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039342 (Acinetobacter baumannii strain TG31986 plasmid pTG31986, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
ttagaaaaatcaccatttttaataatattgtc	Protospacer
..** **.*****************  .*..

10. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039932 (Acinetobacter baumannii strain TG29392 plasmid pTG29392_2, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
ttagaaaaatcaccatttttaataatattgtc	Protospacer
..** **.*****************  .*..

11. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475772 (Uncultured crAssphage clone G0636S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

12. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MW067001 (CrAssphage sp. C0521BW15, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

13. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475779 (Uncultured crAssphage clone J0621H polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

14. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MK415404 (CrAssphage FA1-2_000172F, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

15. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475783 (Uncultured crAssphage clone B0605S polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataattctaaa	Protospacer
    .* ** *************** **** .

16. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475771 (Uncultured crAssphage clone E0639H polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

17. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475816 (Uncultured crAssphage clone CRC_S1 polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

18. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475810 (Uncultured crAssphage clone CRB_ENV2 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
aatttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

19. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475781 (Uncultured crAssphage clone H0593S2 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

20. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MK238400 (CrAssphage ZA, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

21. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MW067000 (CrAssphage sp. C0521BD4, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

22. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475814 (Uncultured crAssphage clone CRBF_ENV2A polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

23. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475822 (Uncultured crAssphage clone CRC_S3 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

24. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475812 (Uncultured crAssphage clone CRB_ENV1B polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

25. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475776 (Uncultured crAssphage clone E0626S polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

26. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475789 (Uncultured crAssphage clone D0618H polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

27. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475766 (Uncultured crAssphage clone D0618H polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

28. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475821 (Uncultured crAssphage clone CRBF_ENV1B polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

29. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475777 (Uncultured crAssphage clone B0611S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

30. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475769 (Uncultured crAssphage clone B0600H polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

31. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MK415403 (CrAssphage ES_ALL_000190F, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

32. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MK415410 (CrAssphage YS1-2_2437, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

33. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475768 (Uncultured crAssphage clone B0601S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

34. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to KX342788 (Uncultured phage crAssphage clone ICD-96 polymerase (P) gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

35. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475787 (Uncultured crAssphage clone B0608S polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

36. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475820 (Uncultured crAssphage clone CRD_S3 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
aatttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

37. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475767 (Uncultured crAssphage clone F0637S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

38. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475811 (Uncultured crAssphage clone CRB_ENV3 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

39. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475782 (Uncultured crAssphage clone C0645H polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataattctaaa	Protospacer
    .* ** *************** **** .

40. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475785 (Uncultured crAssphage clone B0601H polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

41. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475770 (Uncultured crAssphage clone B0600S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

42. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
ttacatggatccccatttttaataaatataat	Protospacer
..*   .**** *************** **

43. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475813 (Uncultured crAssphage clone CRA_S1 polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

44. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475788 (Uncultured crAssphage clone B0608H polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

45. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475815 (Uncultured crAssphage clone CRC_S2 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

46. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475778 (Uncultured crAssphage clone J0621S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

47. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MW067002 (CrAssphage sp. C0526BW15, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

48. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to KX342787 (Uncultured phage crAssphage clone ICD-53 polymerase (P) gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

49. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475784 (Uncultured crAssphage clone B0611H polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

50. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475774 (Uncultured crAssphage clone G0636H polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

51. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475823 (Uncultured crAssphage clone CRD_S2 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

52. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475773 (Uncultured crAssphage clone C0616S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

53. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475775 (Uncultured crAssphage clone E0626H polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

54. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475817 (Uncultured crAssphage clone CRE_ENV2 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

55. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475786 (Uncultured crAssphage clone B0609S polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

56. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475818 (Uncultured crAssphage clone CRE_S2 polymerase gene, complete cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

57. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475819 (Uncultured crAssphage clone CRD_ENV3 polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

58. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT006214 (CrAssphage LMMB, complete genome) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

59. spacer 2.4|852028|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to MT475824 (Uncultured crAssphage clone CRD_S5B polymerase gene, partial cds) position: , mismatch: 10, identity: 0.688

ccagcaagatcaccatttttaataaatctacg	CRISPR spacer
agtttatgaacaccatttttaataactctaaa	Protospacer
    .* ** *************** **** .

60. spacer 2.9|852328|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NC_013390 (Staphylococcus epidermidis plasmid SAP108B, complete sequence) position: , mismatch: 10, identity: 0.688

ctaataaaggaacggttgaaaatttagaggat	CRISPR spacer
gatataaaggaaaggttcaaaatttatgaaaa	Protospacer
   ********* **** ******** ...*

61. spacer 2.10|852388|32|NZ_LT992491|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 11, identity: 0.656

cccgagagcaccaagggcggggctggcccgtt	CRISPR spacer
ggtcagatcaccaagggcggggccggcatcgg	Protospacer
  . *** ***************.*** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

713069 : 743069

Bacillus_phage(28.57%)

transposase,tRNA,integrase

attL 726975:727034|attR 743278:745043

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029628002.1\|713069_714092_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_029628001.1\|714614_714989_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_029628000.1\|715292_715700_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1B1ITQ0	uncultured_Mediterranean_phage	3.0e-22	46.6
WP_000019966.1\|716531_716804_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_029627999.1\|716937_718014_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000118579.1\|718258_719281_+	DUF4118 domain-containing protein	W8CYF6	Bacillus_phage	7.4e-09	22.9
WP_001106951.1\|719283_719982_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.1e-25	32.6
WP_029627998.1\|719974_721435_+	potassium transporter	NA	NA	NA	NA
WP_000929987.1\|721448_722102_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_000250979.1\|722103_723468_+	Ktr system potassium transporter B	NA	NA	NA	NA
WP_029627997.1\|723810_724407_+\|integrase	tyrosine-type recombinase/integrase	A0A141E172	Streptococcus_phage	2.3e-10	31.5
WP_108315934.1\|724498_725678_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.9e-113	65.4
WP_029627991.1\|725776_726817_+\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	1.0e-167	80.9
726975:727034	attL	NA	NA	NA	NA
WP_011787758.1\|727107_728718_+\|transposase	IS1634-like element ISSpu7 family transposase	NA	NA	NA	NA
WP_011787758.1\|728877_730488_+\|transposase	IS1634-like element ISSpu7 family transposase	NA	NA	NA	NA
WP_084998363.1\|730682_734201_-	DNA helicase	NA	NA	NA	NA
WP_000009527.1\|734924_735245_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029627615.1\|735348_735885_+	hypothetical protein	NA	NA	NA	NA
WP_029627614.1\|735890_737267_+	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	1.8e-34	30.7
WP_029627613.1\|737683_738136_-	hypothetical protein	NA	NA	NA	NA
WP_029627612.1\|738254_739550_-	hypothetical protein	NA	NA	NA	NA
WP_029627611.1\|739543_740506_-	hypothetical protein	NA	NA	NA	NA
WP_029627610.1\|740508_740745_-	hypothetical protein	NA	NA	NA	NA
WP_029627609.1\|740741_742298_-	hypothetical protein	NA	NA	NA	NA
WP_029627608.1\|742337_743069_-\|integrase	site-specific integrase	NA	NA	NA	NA
743278:745043	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT992490

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT992491

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection