CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS398547	Orientia tsutsugamushi isolate UT176 chromosome I	5 crisprs	NA	5	2	17	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS398547_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398547_1

222411-222529

Orphan

Consensus_repeat	Method
TATGCCTTTAGCTATGCCTTTAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LS398547_1

>merge|NZ_LS398547|1|222411-222529|CRISPRCasFinder
TATACCTTCAGCTCTGCCTTCAGCTCTGCCTTCAGCTATGCCTTTAGCTATGCCTTTAGCTATGCCTTTAGCTATGCCTTTAGTCTCACCAATCTTTATACCTTTAGCTATGCCTTTAG

>NZ_LS398547|1|1|222411-222529|CRISPRCasFinder
TATACCTTCAGCTCTGCCTTCAG	CTCTGCCTTCAGCTATGCCTTTAGC
TATGCCTTTAGCTATGCCTTTAG	CTATGCCTTTAGTCTCACCAATCTT
TATACCTTTAGCTATGCCTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398547.1\|WP_109490414.1\|223379_224474_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|274285
NZ_LS398547.1\|WP_109489799.1\|236304_236583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_109489789.1\|210539_210860_+\|type-F-conjugative-transfer-system-pilin-assembly-protein-TrbC	unknown	unknown	gnl\|CDD\|370610
NZ_LS398547.1\|WP_109489798.1\|235538_236240_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|367112
NZ_LS398547.1\|WP_109489791.1\|212799_214002_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_LS398547.1\|WP_109489790.1\|210856_212548_+\|conjugal-transfer-protein-TraN	unknown	unknown	gnl\|CDD\|369160
NZ_LS398547.1\|WP_109489788.1\|208525_209185_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|274276
NZ_LS398547.1\|WP_109489792.1\|214684_215401_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372692
NZ_LS398547.1\|WP_109490416.1\|234733_235210_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182169
NZ_LS398547.1\|WP_162562854.1\|221060_222263_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|313610
NZ_LS398547.1\|WP_045914126.1\|233268_233763_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|214643
NZ_LS398547.1\|WP_109489800.1\|236949_237759_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NZ_LS398547.1\|WP_109489797.1\|232621_233227_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LS398547.1\|WP_109490415.1\|226310_229121_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274289
NZ_LS398547.1\|WP_174182853.1\|209475_210453_+\|TraU-family-protein	unknown	unknown	gnl\|CDD\|377717
NZ_LS398547.1\|WP_109489796.1\|231561_232500_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_LS398547.1\|WP_045915302.1\|214112_214673_+\|DUF4065-domain-containing-protein	unknown	unknown	gnl\|CDD\|226128
NZ_LS398547.1\|WP_109489795.1\|230194_230962_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_LS398547.1\|WP_045919231.1\|209268_209475_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_109490413.1\|219370_220507_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
NZ_LS398547.1\|WP_109490414.1\|223379_224474_-\|toprim-domain-containing-protein	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	6.93912e-12
NZ_LS398547.1\|WP_109489800.1\|236949_237759_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	2.01921e-51
NZ_LS398547.1\|WP_109489789.1\|210539_210860_+\|type-F-conjugative-transfer-system-pilin-assembly-protein-TrbC	gnl\|CDD\|370610	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein. This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.	4.59565e-22
NZ_LS398547.1\|WP_109489798.1\|235538_236240_-\|sensor-histidine-kinase	gnl\|CDD\|367112	pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	4.37441e-06
NZ_LS398547.1\|WP_109489791.1\|212799_214002_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.41903e-25
NZ_LS398547.1\|WP_109490415.1\|226310_229121_-\|AAA-family-ATPase	gnl\|CDD\|274289	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.	2.51648e-111
NZ_LS398547.1\|WP_109489788.1\|208525_209185_+\|conjugal-transfer-protein	gnl\|CDD\|274276	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.	5.39997e-54
NZ_LS398547.1\|WP_109489792.1\|214684_215401_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|372692	pfam13728, TraF, F plasmid transfer operon protein. TraF protein undergoes proteolytic processing associated with export. The 19 amino acids at the amino terminus of the polypeptides appear to constitute a typical membrane leader peptide - not included in this family, while the remainder of the molecule is predicted to be primarily hydrophilic in character. F plasmid TraF and TraH are required for F pilus assembly and F plasmid transfer, and they are both localized to the outer membrane in the presence of the complete F transfer region, especially TraV, the putative anchor.	1.31607e-50
NZ_LS398547.1\|WP_109490416.1\|234733_235210_-\|sensor-histidine-kinase	gnl\|CDD\|182169	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS.	0.000230873
NZ_LS398547.1\|WP_162562854.1\|221060_222263_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|313610	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.	0
NZ_LS398547.1\|WP_045914126.1\|233268_233763_-\|ATP-binding-protein	gnl\|CDD\|214643	smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.	8.37983e-08
NZ_LS398547.1\|WP_109489797.1\|232621_233227_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	2.30432e-31
NZ_LS398547.1\|WP_109489790.1\|210856_212548_+\|conjugal-transfer-protein-TraN	gnl\|CDD\|369160	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilisation (adhesin) component of the F-type conjugative plasmid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.	2.68332e-107
NZ_LS398547.1\|WP_174182853.1\|209475_210453_+\|TraU-family-protein	gnl\|CDD\|377717	pfam06834, TraU, TraU protein. This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.	4.02449e-120
NZ_LS398547.1\|WP_109489796.1\|231561_232500_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	2.34535e-48
NZ_LS398547.1\|WP_045915302.1\|214112_214673_+\|DUF4065-domain-containing-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	2.8726e-18
NZ_LS398547.1\|WP_109489795.1\|230194_230962_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.34599e-18
NZ_LS398547.1\|WP_109490413.1\|219370_220507_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	7.99587e-24

>NZ_LS398547.1|WP_162562854.1|221060_222263_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MPLVKNSERLHILITGTTGTGKTNMLNELLPQIRLHKDRAIIVDTTGAFIDRFFDPKCDKLLNPFEKNSEQWLPWNDCFEAADFHDIASSFSNYTPKLDDFFAKNAELVLSEALKLYKDDKDIIKLIHTIIYSDNRQFAKAFRNTAVSGIISESALETSAGIQSTLGKNITSLQYLKPGGSFSIKEWFSNSNETGWLFITANPNQRAALCPLISAWISIAIKALMCRNPNHDNKNMWFILDELPALQKVSSLPVALAESRKYGGCFVAGLQNIHQLEAIYGAAECASMLDLFNSKFIFRVSDQVTAYKSALTLGEQEIIETQENLSYGSNTMRDGVNMNNVERKKILVMPSEIMNLPDLTCYVKLAGNFPITKLTMQLQNLNTAFVWGYKLLKKLKLVEY
>NZ_LS398547.1|WP_109490413.1|219370_220507_+|tetratricopeptide-repeat-protein
MKFIKYITAVLLLLNTAILAEQNNQLVQHDLIQERTIIAREYFNIGSSFLRLKKYQEAIEYFNIAIKYSPGYAPAYNGKGIALDGFGKPLEAIENYDLAIKYNPHFAEAYNNKAVSYREHGKNEEAIILCNLAIKYKPHFAEAYNNKGASLARLGQYEEAMENYDIAIKYEPNNPEAYYNKGIALLHLGDIHGAIENYDIAIRYRPNYSEAYHNKGLTLAIWGQFQNAIEHFDLAIKYDPNDLKAYNNKGYVLNLLKRPAEAMESCNLAIKIDPNCADSYYIKGMVFEKLGKHQEAIKNYDIAIKYNPNFDKNYLEKGISLVNLGQYSSAKENFLLAIKYNPNIISEHETMLKRLTELKNFTGVKEYEQKLQILKKYS
>NZ_LS398547.1|WP_109489792.1|214684_215401_+|conjugal-transfer-protein-TraF
MNAIHLSVIIVLFGYLSMELATANSLPTGFLWYNDKHGHELTESSSKLMSSAHDHRIEELKEQFNRAQRIALDNPTLENVITAQRLQKQIMEKAHKFATMWQLATLLDYQLINAHEASNSLHRKLYQEKSEQKNDLKLKNIAKNWGLILQVKEDCLLCKAFMPIVQSFANKYAFQLLAVSKNNELLNKLNPKHIVPVLYLVASDGKKIYAVARGIISEDKIIDNILAIDRYYHKLETR
>NZ_LS398547.1|WP_045915302.1|214112_214673_+|DUF4065-domain-containing-protein
MTIQQKGELLSCFDVASYFLVLVDREAGDVITQLKLQKLVYFEQGVHLALFDKPLFKEDIEAWENGPVVRHLRSIFGGFETNAIPAPGEIDFSIYTNQQKELIYKIYSSYGEHTASYLRDLTHLHSIWQQAIIRPSHVITKEEMRKFFKNHIKNIEDYLLPVSKKDTVEIVNAEDQWWINYDSGVP
>NZ_LS398547.1|WP_109489791.1|212799_214002_+|tetratricopeptide-repeat-protein
MKFVKYITAVLLLTLLNTTIASKRNNNQPVQQKLIQDKAILAEKHFYVGISFLELNKYQEAIENFDLAIKYNPNYADAYYNKGVCLYELGQQQEAIENYDLAIKYNPNHADAYNNKGVCLYELGQQQEAIENYDLAIKYNPNDADAYYNKGVCLYELGQFQEAIENYDLTIKYNPNFAKAYCNKGVCLDKLGQQQEAIENYDLAIKYNPNDADAYYMKGFCLSKLEKYKEAIENFDLAIKYNPNDADAYYNKGVCLDKLEKYKEAIENYDLAIKYNPSDAKSYNNKGACLSKLEKYKEAIENFDLAIKYKHNYSDAYYNKGVCLSKLEQYKEAIENFDLAIKYNPNYANAYYMKGFCLYRLGQHQEAIENFDLAIKYDPNNGTLYKLINILKQKIAGIKK
>NZ_LS398547.1|WP_109489790.1|210856_212548_+|conjugal-transfer-protein-TraN
MRLLSILTLIVLNISCCLASMQSSYNEASNYNVNLGNSSNTQELFHQGSNVNYPNNDEDLTYHGRNQLGTESGAMLFQAENSKNNALTQHNINDQNYMIANSMRIESDPLSALDSSNFVTQTSTTNTEIIQSCTEGSKFNIELIRELNVECRLENVWLPWQNRQMEFATEKIKENHSNWLKSRSDVYDDESGAQIYCLVDDPEAIERQMKRAIANRLGVSTQHIGRNFLLHEMKKICILEYDYRDKTQELREVAEYWQVLNPELEQLTESNECYEVNRINYDGGDRVFFDKFKVNRPYWKQKIVFSCTSDPKDGCKHLKIQNCELKNSTCQKSVANICLLWQHDYSCSTEKQTMLHSSLRNNSIFCLGGNCNTPTIIPNRDIAKVAHLAMLNQMSKDIKTNPVSVFSGKHRKCKKDVFSFLNCCSSMTGWGRDIGLSQCKSKEQELALYRKKGYCYYIGTYCSSRIPILGICLARKSTYCCFQSKLARIFQEEARKQLKIDFGTPECPKCRGLTVKELQKVDFTKINMDELFGDILTKAQNSMNKDIIAGIKDKVHRMQQSHH
>NZ_LS398547.1|WP_109489789.1|210539_210860_+|type-F-conjugative-transfer-system-pilin-assembly-protein-TrbC
MDKQKTFIFVSFSMSDEALKSYFADSQKAGAQLVMRGLINNSFIQTKNKTMELGISFDIDPSLFEKYKVDVVPVIVIDDEKRGLTKKLTGHIPLATALEIMNENTQ
>NZ_LS398547.1|WP_174182853.1|209475_210453_+|TraU-family-protein
MKELVILFAIVMSITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNASGRLICLCPKPGIPVPVPGIPVGFWEPVRLVDVTKSPMCMVSLGGLSFGSATQKGMKDEAEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNSETLLFQNVAAYQACIADCMSCSAGLLASDYAFWCAGCQGMLYPFTGTAAAHNGGVGTSVLMVSKFMARMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEATWQAGREFPVNGEDFGYLIWRKRDCCLL
>NZ_LS398547.1|WP_045919231.1|209268_209475_+|hypothetical-protein
MKSWKLQQLEQDLVKIFNRTLISGEIQEIVNSGGETAYLVPGVKDIENTASKFRKYKKKEVYIIKKSW
>NZ_LS398547.1|WP_109489788.1|208525_209185_+|conjugal-transfer-protein
MKQGVVIGIGTLFALFAVAYQVSDIRANLLNADIGVEIKDYGTRGHVFPIIEESLLEVIMAKLNAASKSGLLNQMQLEFQEKVRQKIMRPVPVKNLSKATENKTRIYDSTYVQKDDIKTKNGIIIVKGGTKINSLEIINWGEPLILIDGDDEDQVAWAKSRPGKIVLVNGNPIELSNLLGRHVFFDQLGFLSTKFKIQAVPAIIEQENTVLKISEVSTL
>NZ_LS398547.1|WP_109490414.1|223379_224474_-|toprim-domain-containing-protein
MAEGAETALSLQQSGIKGNIIASAGISNLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNNITNVKELYNKSSSLYYFKQKEEAKVETIVVNKYLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQAGVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQQRLCPKH
>NZ_LS398547.1|WP_109490415.1|226310_229121_-|AAA-family-ATPase
MAIQFARIEFLRRSEGGDSCRKAAYNARTIVKNEKTGIKYNFSRKKDNVYHTVLIPDYVNQEFKNIQTLMNEVERTAKKGNSQLLKDIVIALPDDKELNLEHRIEITHQIVDAMEWVQNGLGVQIDIHKPQIGDKNLHANILVTTRRFKENGEELGDKAVDLESKFITVKGQRYIIREVEMIHERVKEIINAYFAKLGLPYRVDKISEVPGKHIGNIKYIEIRNLITEVLNENELRKEAHLKIINDADVITDSITHYKSIFTKQDVEKAVKDIPDPTAREQLVQQVLSSNRILELYHDDGESSKYFTTIEVRNEETRIIRIANKINNQVYYNDIYNLKSDIEGLANVSEEQKQALRHILLSTSGVRVLRGRAGTGKSYVLIKAHELATNRGQKVIGLAPTNKAVSELKSKGYTEVYTVKGFLYNRKKIFMKGSLIVVDEAGMVGTKAYAELFRVVRNNYCQLILAGDEKQLASIERGGMFEMLSNIFGSHVLVNIRRQSKNWSREAAMEFAESNILSGITLLRQNNCVRFDNTLQDSMSKLIYDWSLSKFKPHEKLVITVRNKDVDILNSSIRSLLKANGTLKGTEYERSIDGRKEFYMAGDRIVFQTSDKDLQIQNSEFATLTSVSKNKFIAKTDTGKEVSFDPGKIQFKHGYASTVYKVQGASIKDVYVLHNGVSNISSSYVAMTRYIENLKLYCNKEATKSINSLIKQLSRPNEKSASITLKTAHDLEKERTKTTVFSKIENWFKSIINDINDRSNVNKEYYHFTAKPEEEAKVEKVQLKDISTPLFMHIKEQRQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYASTINKAAKALKSKGAITSIVVPSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVKTEPEQVVKTDIAQKIGLRR
>NZ_LS398547.1|WP_109489795.1|230194_230962_+|tetratricopeptide-repeat-protein
MLTDKYFNKGNSFFQLRKYQEAIKKFNLAIKCNPYSAEAYINKGIALDKLGQHQEAIENYDIAIKYKPDSVEAYINKGISLNELGRYQETIDNYDIAIKYKPDLAKAYINKGNALNALGRYQEAIENFDTGIRYNPNDEKAYYNKGISLYQLGQYQEAIENCDIDIKHKPDLAEAYMNKGVALSKLGQHQEAIKKFNLAIKYKPGFAEAYLNKGESLKQLGQREKAIKNFELAIKYKPGLIAPYIRDILKKVEMQ
>NZ_LS398547.1|WP_109489796.1|231561_232500_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIASKKESIVDVLCKDKNGAQYIIEMQVDPTQGFEKRAQYYAAKAYGRQPNRGKEGKYSDLKEVIFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTFIELPKFKKNRVEELSDITEKWCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVEDYKLERAKAEGKAEGKAEGIKLGEAKGKAEGKAEAKKDLAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK
>NZ_LS398547.1|WP_109489797.1|232621_233227_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MLAFLNCEHINKLLDKLDLINHSFNKRIDLDKHIDLDKVKKAIFYAKKYHSNQKRDTGEPYYMHPLEVALMVADYSFKTDTIITAILHDTIEDTTLTKEKIAIEFNDNIAEQVLALTRNRGGKKTSSMKMIQTLVNQDKVELLLIKLLDRLDNIKTIFIKPAKRRQEIILETQQEFIPLAEYLKLPDIAIELNKYCELYAT
>NZ_LS398547.1|WP_045914126.1|233268_233763_-|ATP-binding-protein
MSHTIKSGDFGIQAKVNNTIRALKPFTENKGINLSCNFKNDIKDLIIVNSFQIQAVLILLIGNATNSQCREISVEVDLLPSANQKTNYRILQLIVFDNGIGISAEKVKKINNELRNLHIKSYAVLESELQLVKRFIHDITGKIKLESQQDKYTAFTCSIPIEVR
>NZ_LS398547.1|WP_109490416.1|234733_235210_-|sensor-histidine-kinase
MLNGTIAAIRVIDEDEKIELREKGNDIYDIITGDRFRIRAVLSQLAESAIMHSTNSKVRVSIDFLPPQNEQSNSKDRILKFVVHSVGAGISKSKLQEMNSELKNPHLIKHQALDSGLEFIKHLTYEMKGSIKIESKEGHYTKFLVSIPIQTSNLNSQH
>NZ_LS398547.1|WP_109489798.1|235538_236240_-|sensor-histidine-kinase
MENNNIYLIQYIRHIVNNCNKTKRNIVELVGYKQDAIAKITDTLGSLDELINHLNDKICVFRKNIESKNVELENFSLQTFVKDTVARLKAIVEDDRIDLKSNFQANIKDSIIGDSLRIRAVLSQLAESAIIYGTKGRTINICVHLLPSQDGKTDSKDKILQFVVHSIGPSIQKEKLQKMNSELSNSNLTKHQELGQGLVFIKQLTHQMKGNLKIDQGSNYISSSFEVPIQLYT
>NZ_LS398547.1|WP_109489799.1|236304_236583_-|hypothetical-protein
MSLGNEGQQKNKSIFNKNIQSKLLLKHLAAGDKALLKLTHQLKALNLNIIDVFKQLKSKPGEVRTLQSEIIENKKSTLREAICHMPISLANC
>NZ_LS398547.1|WP_109489800.1|236949_237759_+|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MSVAVANKSKPFLHWIGSKRRIVNKLIEHLPQGPHYNYYEPFLGGGALFFQVRHLFKQCFLSDINLDLITSYNAVKNNPNEVNRLLSLYHKHHSKDYYYKVKNKYSNNQNEITAKFIYLNKYSFRGIYRVYKNGQSAQTFSGECYIKLHIASRINQCSNLLHGVSIYATDFSFIEPQQNDFVYFDPPYHKSGERFYTRLPFDEKDQIRLRDFVQELTNKGVKIMISNNNTAFIRDLYKDFNINTVTVVYSINEQRNHVNELIITNYKTC

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Crispr_ID: NZ_LS398547_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398547_2

632111-632199

Orphan

Consensus_repeat	Method
AAGTTAAATCTAATCTAGAAACTGAGTTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS398547_2

>merge|NZ_LS398547|2|632111-632199|CRISPRCasFinder
AAGTTAAATCTAATCTAGAAACTGAGTTAAAAATTGTTAAAGAACGTCTTGTCAAAAAAGTTACATCTAATCTAGAAACTGAGTTAAAA

>NZ_LS398547|2|2|632111-632199|CRISPRCasFinder
AAGTTAAATCTAATCTAGAAACTGAGTTAAAA	ATTGTTAAAGAACGTCTTGTCAAAA
AAGTTACATCTAATCTAGAAACTGAGTTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398547.1\|WP_045913361.1\|612645_613866_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_LS398547.1\|WP_109489926.1\|617690_622208_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_109489929.1\|629262_629595_-\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|376552
NZ_LS398547.1\|WP_012460731.1\|609542_610796_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_LS398547.1\|WP_109489924.1\|613946_614963_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_LS398547.1\|WP_045918884.1\|637666_638056_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	unknown	unknown	gnl\|CDD\|239575
NZ_LS398547.1\|WP_012460730.1\|611023_612325_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|237059
NZ_LS398547.1\|WP_109489935.1\|646928_648023_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|274285
NZ_LS398547.1\|WP_174182849.1\|643508_644219_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274289
NZ_LS398547.1\|WP_109489927.1\|623087_623955_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_LS398547.1\|WP_045918888.1\|640072_640858_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_LS398547.1\|WP_045918885.1\|638247_640038_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236375
NZ_LS398547.1\|WP_109489934.1\|645086_646742_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222984
NZ_LS398547.1\|WP_109489936.1\|648074_649082_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NZ_LS398547.1\|WP_109489925.1\|615237_617691_+\|virB4-protein-precursor	unknown	unknown	gnl\|CDD\|273346
NZ_LS398547.1\|WP_109489933.1\|641590_642458_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_LS398547.1\|WP_109489931.1\|637252_637636_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|239579
NZ_LS398547.1\|WP_109489928.1\|627542_629279_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131259
NZ_LS398547.1\|WP_174182850.1\|644275_645058_+\|conjugal-transfer-protein-TraA	unknown	unknown	unknown
NZ_LS398547.1\|WP_012460729.1\|612338_612632_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LS398547.1\|WP_045913361.1\|612645_613866_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	4.02432e-177
NZ_LS398547.1\|WP_045918884.1\|637666_638056_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	gnl\|CDD\|239575	cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	7.68061e-22
NZ_LS398547.1\|WP_109489929.1\|629262_629595_-\|iron-donor-protein-CyaY	gnl\|CDD\|376552	pfam01491, Frataxin_Cyay, Frataxin-like domain. This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport.	4.89123e-20
NZ_LS398547.1\|WP_012460731.1\|609542_610796_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_LS398547.1\|WP_109489924.1\|613946_614963_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	9.97943e-133
NZ_LS398547.1\|WP_174182849.1\|643508_644219_+\|AAA-family-ATPase	gnl\|CDD\|274289	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.	4.54193e-33
NZ_LS398547.1\|WP_012460730.1\|611023_612325_-\|proline--tRNA-ligase	gnl\|CDD\|237059	PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional.	0
NZ_LS398547.1\|WP_109489935.1\|646928_648023_+\|toprim-domain-containing-protein	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	1.36055e-12
NZ_LS398547.1\|WP_109489927.1\|623087_623955_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.12267e-48
NZ_LS398547.1\|WP_045918888.1\|640072_640858_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.1818e-165
NZ_LS398547.1\|WP_045918885.1\|638247_640038_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236375	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_LS398547.1\|WP_109489934.1\|645086_646742_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222984	PHA03100, PHA03100, ankyrin repeat protein; Provisional.	1.60751e-27
NZ_LS398547.1\|WP_109489936.1\|648074_649082_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.82729e-62
NZ_LS398547.1\|WP_109489925.1\|615237_617691_+\|virB4-protein-precursor	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	2.24936e-116
NZ_LS398547.1\|WP_109489933.1\|641590_642458_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.09782e-49
NZ_LS398547.1\|WP_109489931.1\|637252_637636_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl\|CDD\|239579	cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	1.07466e-31
NZ_LS398547.1\|WP_109489928.1\|627542_629279_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	8.38268e-134

>NZ_LS398547.1|WP_109489929.1|629262_629595_-|iron-donor-protein-CyaY
MLERSFIVLASQAISQIADSIISQDLDGIIDVNFIDEMILYITISTKQFVITGHTFARQIWLVSPISGPHHFSYIDNKWLNRDKQDILPLLQTEINQLTGFNIHLNASNE
>NZ_LS398547.1|WP_109489928.1|627542_629279_-|ATP-binding-cassette-domain-containing-protein
MHLMSNYKILHLFLKYLQPYRFKIFIVLISLIMVSGSLLYVGSAIKLLIDHNCSCVNIIMAQISITIVIFSIFSFLRSFTINSISENLILDIRSDLFKHLLKLRISTFAKLKVTDINNRLLSNINNIGELINNLFSFILRNSIMFLGSLMLMFTQSNKFTYLVIIMFITIALPMIKIGHYIRTLAHITQFELLKIHSKIDESFNNIKLIYAFNQQSHQVDTLNTIQREYFVEFKRKIKLRSMFFALTMALVISAVTFIIWLGSNDIAVGVMSSGDLTSFLYYAIVAVASLGGIIESFAKFPGYFMAAEKVFSLFEIDSVESNLSTNELHNGVIKFNNVSFSYPSRPNIAILSNCSLSIAPGQFVGIVGKSGAGKSTILQLLIKFYDPTTGTIQINNVDISSVHLPQLRKNFSYIPQETYIFSDTIKNNILFSNQHASMEDIAYAIQVALIDEFLTKMPDGLNSFIGEKGNMLSGGQKQRLAIARGLITKAPVMLLDEATNAIDSKTEKIILNNLRSISPQKTIIVVTHRISAIEQADNIIVLDNGKVNAQGNHAELMQHCQLYQELIRRRTNSSNCKA
>NZ_LS398547.1|WP_109489927.1|623087_623955_+|IS630-family-transposase
MARRYSYDLRMKIFKAVDDGLSIVKACKIFNISRNTIYRWKHLKCETGDIKAKPYGPAKGYNAKIDLKEFEELIINHHDKTSKELSIILGNRLQRTRINYYRKLLGYTYKKTHFHPKRDTVLRDEFIEKIKQISKENLVFIDESGIEDNACREYGWSIKGTRCYGNKAYQHKSRVSMIAGLCNNQIIAPVIFEGNCNKAIFTTYVETILIKELRPGQIVIMDNINFRKNNTIKVLIESVGCSILFLPTYSPDLNPIEHYWFKIKNEIRKVTAQFKDIRIAVAHLMKFI
>NZ_LS398547.1|WP_109489926.1|617690_622208_+|hypothetical-protein
MKPQHIFLVIIVAVINFITVANATASICTWFRGNRTETWNGDNEDLQGIIKRRKHLSFWQKREKQFTSTENCPPYYKYGGRRGCLLKFEEPATIFDSKFWTTVVDNSQTPDWYYAPGYLRYCGEETMATSYFNPKIRVRHQSCNAIACWHNDSNLSHGDCAVFATSLGIPLLRICARIAIPDTTSFDQDEKFICASDSITNDPLCQYNAKDDPGYTRCYHLNLQGGQEPDKIYDSVDDNCKARIIAPKLCLYVDPSLTSLSALLDPFDYNPVSQPLHSGSQIFPVGKILIELVNAGTSLADALVALVGIVVDKTGLSFLKDIVRFIGNVIQLVGSTFVDILKGAFDLNIVVNPEVLGCVELPLGPLPPPFYNELQKTASGKVEIIPICSKEELNLENKENINVASSQCAVSNIHNNIISNAVRISNSNQLPLCQNGEEGEKSYKANQCVKIQNIELFGPSVIRKKYNDVLKLCKYGNSDEPCVNYNGCEDSDNQLAGCQGRGFRVLYATNIKGKVVDDISQLEPSEKFNYCLPDCVGARCPIPASPGADSCCEGAQLCQQVYGVNVGNFDDIKLVFQQDKVNEGKNGVVKESIRFNGKDFIALITRTTRPICKELLQSSDSNIKCDDPQIIHEQTSDDICVYNINNTKKPLIGCVKRAAPPLPTAFKCRNSKNNHFKPDIGIKLEVKESETNYSLEGCIEAKHSHHQNRTNDVEDDENNNQFNINLAGYDYNAYVTDHKGSVSPDVGTKWGKYDSEAPKDAQDVQSHNAKYRYLKGIEFINNEYVVGGKLICVNQNSNAIPKCPLDEKMCVLAKVKENPECIKAQKNNNTQQNLGPETCKEVSQSIEDRVDPREFALCNEESANYPNCFKLGTNEHYQLTKTGFGNTMSLSGSSIKTEEDIMQTIGNCGSETVKSKECVSYSPRKYIYRFNTVQEVLKCKTDHSRCTVNVRSCTNDELMDRSNTQLTNDAVKSETALIGLFKTTNNLICSGVIDKVCKDVKYKCQPKFTISDNGTVIAIETCTDDASTSANKKKAAPITDFVCSTTKLESCDKLSESKFYTFTNSHENLIRHYNSANLLGELVETKKYVNKLDTKAVLIDPKFCGNRIKQCPENKHCTIFDEGKKFILGDEQEYVIKRCQTQLCYAKTSEEKKVDKDDALVKSPYEGDGKTRFRSKNALELGLCQVIPDIPKCKQEESYNAIWPETNPGDQAIGKCKQGTNPRIKYIPISNDSLKRRCLFDPGIDANSNVHFTSGDTAKPVFALPKNKKVGCQEYKVKCSKISKNGVIWPAVELDAISQPKCVNKAHKLSNPNATRKCELDHNNNPVFTKLAATVTCFHPDMCRKRLDKKTGVMWLKAKVGEMSHPTCINKNHKLSHPSARRLCLLDDEGIPQLTLKAMIQIKPEAVIIKDDLTDILASNVTCYNPNKCSEVLENEIIWSEAEVGKESRPRCKNPDYKVSNSLVTRMCLDDNGVPKLASTVSYSLYPIGQVKASVSSIKCLPRLH
>NZ_LS398547.1|WP_109489925.1|615237_617691_+|virB4-protein-precursor
MGFIHKFLHSRKIDAKQFDSNAQNFIPITCHYNDETLLTKNGELIQILQIKGINSEYTNKDLLGIRAAIRNAIKNHINNSNFAVWIHVVRRCDNIDDSTPYSQALPNFIHNIWSKKNYWQDKFVSTLYISIVHHGCNLGIRNLDSFLNSLSFKTLDSFYDKFIASALKNLSIATNNIITELQRYNPCKLSIKIDNNKVYSDLLNFYKKIIQLKTGLIEVKDVDCAVQLATHKYSFGGDKIEVIHKQEKKFASILGIKEYQDIKDELVSKCLHAPVEFIATEIFYFADQVKAINSYSQQSKVISASRDSELALFKGIEPIVNSDNTLPQFCHQQISIMIMADSIDLLESRVAYISQRLVKQGIIHVREDINLAQTFWSQLPGNFNYIRRVSYNIIDNVAALAALHHYPVGMQHSRWGRSVTIFRTECGTPYFMNFHDESAKGHTCIIGGAQSGRATVTNFLLSEASKYSPTILYLTNRNNAQVFIKGIEGTWYNGDLPFNPLSYLESSDDLLELFKIITGSYFNNLSDSEIECITELAIAVMDMPPESRSLIKIIKDFNFKDYSAGASVKKRIKLFVSDDKCSKIFNQSSTLELQDNNVTAINLADYTDYQFNQSYTPQVGEKPEIYHNKLQTLHCLRSGIIFSLIKKFSLLASPEPKILVVDNMPDLIVEQVFMNLIKQITEQLSENNGIILSVVQVNQNDQFYYSDFWKKWLKFNNTKIILPTNIRNLPIAEICNLSTREAKKFNTISPNSRLFMVKQDNNYVIVELNLEGFPAIRKVLSAEEEDLNLFHKIMQKIGDDAPSAWLSDVYDQFQNSE
>NZ_LS398547.1|WP_109489924.1|613946_614963_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MRIAVNGLGRIGRLVVRAITLLQDSRLELVAANSLAESDIIAHLLNYDSTHGKLTNRFQYNNNYLFNSTSKISLFRQSKPETIPWGKENIDIVIECSGKFNSKSAAIAHLTAGAKKVIISAPCENADATIIVGVNDHLLNSNHNIISVGSCTTNAVAPIVKILNDKFGIQCGHITTVHAYTSDQNILDNSHKDFRRARSCFASIIPTKTGVSTSLKEVIPELANCLDGSSVRVPTSNVSLIDFTFYSHKTLTVQSINNEIKESAKLANMKDILDIAPAPLVSVDFNHSKFSAIFDPYETKVVGKNLGRIVAWYDNEWGFVHRIIDIVKIVELCCRDER
>NZ_LS398547.1|WP_045913361.1|612645_613866_-|phosphoglycerate-kinase
MIQLRQFSDVIVKDKVVLLRLDLNIPQEGGKITDNTRIVRTIPTIKYLILHGAKVVIISHLGNPKGRIELTLSLRSVVTELEALLNIKVQFCSESIGATPKNAIIKMKAGEVLLLENLRFNSGEELNDATFVNELSSLGDIYVNDAFSCSHRKHASICGLPAKLPSAAGFLLLSELKHLTSIFSNANKPFTVIIGGAKMSTKLDLLNSLITKADYLIVAGAMANIFLAMKRFNIGASLYKPELVNVASLILKKATSTNCKIILPFDAVIQNFNSNNITIIELNSSLVMQSNAKIMDIGPKTIAQIINIIKISKTIVWNGPVGAFEQLPFDHGSTYLSKAIAEKTRTGSLCSVAGGGDTISAIKKSGVIDDFSYISTGGGAFLEWLQGKTLPGVEALMQKLDTAKYI
>NZ_LS398547.1|WP_012460729.1|612338_612632_-|hypothetical-protein
MIVIVYNLDDAIKELNSIHVPVIITNPPGSIKYLGALTIDYLFKILKNKFNNISKVIVNVEDDIPALFTLLKLNYSRSEIIYTGSSESAKKLLQLYN
>NZ_LS398547.1|WP_012460730.1|611023_612325_-|proline--tRNA-ligase
MRLSQYFLPLLKEDPAGAEIISHKLMLRAGMIKQACAGIYNWLPLGIKVLQNIQDIVRKNMNAAQCIELLMPCIQPASLWKESSRYNAYGKEMLKIKDRHDNDLLFGPTNEELITDIFRSSIQSYKDLPKNFYHIQWKFRDEIRPRFGVMRSREFIMKDAYSFDIDQASAIQSYNLMYLTYLKIFKDLGLKVIPVQADNGAIGGKLSHEFHIITATGDSKIYYDSTKFNPFDYNQDLSLNKLEQLYIVTEDKHKTDQNQISNDTISTISGIEVGHIFYFGTKYSELMKACIQLQNGKLTAVEMGSYGIGISRLIGAIIEANHDEYGIIWPQNVAPFKVSVINLLPNNDKCKQTSNQLYQILTQQKTDALLDDTSSSAGHKLAAHDLIGIPYQIIIGKNFIETATIEFKYRHNQQLQKLSIDALINQLTEISKH
>NZ_LS398547.1|WP_012460731.1|609542_610796_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MAKKIDNKALSCSFCCKNQNEVKKLIAGFSGFICDECIELCIHLIEEERKSNLAISNYSKLPPKKIYEAINAHVVGQQQAAKILAVAVYIQCIRFEHRELADLVAKSNVLLIGPTGCGKTLIAQTLAKIINVPFAMADATSLTEAGYVGEDVENIILRLLQAADFNVERAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQEFIQIDTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEADDLTKFGLIPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEEEALVAIAQKALAKKTGARGLRAILECVLLDTMFELSNLKNMQVIITADIVKNNLKPIIKPKLQKKSAKKKVTA
>NZ_LS398547.1|WP_109489931.1|637252_637636_+|succinate-dehydrogenase,-cytochrome-b556-subunit
MNKFNNSHTRPISPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRVVVNIFYNLWFQALIYLTIFTTCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF
>NZ_LS398547.1|WP_045918884.1|637666_638056_+|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein
MKAQNLQNSLNTIKSLSTDKYCVQHWWYQRLSAILMLPLLVWLVFFGKAVVQKSPVELVELVKYPYNVLMIILLLITMFFHAAIGLKVIIEDYVNNLLLRYLLIVLVQCFTFVTVVAGIISIILLCINY
>NZ_LS398547.1|WP_045918885.1|638247_640038_+|succinate-dehydrogenase-flavoprotein-subunit
MVKAYKIINHEFDVVVVGAGGAGLRAIVGMAESGLRAACITKLFPTRSHTVAAQGGISAALGNIQPDKWQWHAYDTIKGSDWLGDQDAIAYMCREAPAAIIELEHYGVPFSRTPDGKIYQRPFGGMTTEFGDGAAAVRTCAAADRTGHAMLHTLYQQALKHKAKFFIEYIALDLIMDNGACKGIVAWNLDDGTIHCFRSHIVVLATGGYGRAYFSATSAHSCTGDGNAMCARAGIALQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSEGERFMERYAPSAKDLASRDVVARAMTMEINAGRGVGIYKDHIFLHLNHLDSKTIQQRLPGISETAMIFAGVDVTKQPIPVIPTVHYNMGGIPTNYHGQVVTKTENGDMEIVPGLMAIGEAACVSVHGANRLGSNSLLDLIIFGRAAANKAKEIIAISTKHQPLGNNIVDAIIERFDQTRFLNGNMPIAELRLTMQRAMQNYAGVFRSYDKLTEGMKIIKQNFNSRTDIKLTDHSLIWNTDLVEAIELQNLLYQAAITMFCAANRQESRGAHAREDYPNRDDDNWLKHTLATIDEEGNVDIDYRNVVLDPKDDEMMAIVPKKRVY
>NZ_LS398547.1|WP_045918888.1|640072_640858_+|succinate-dehydrogenase-iron-sulfur-subunit
MVEFRLPPNSKVKVGKHYAAKDSVKKVKRVSVYRYSPDTGDNPRIDIFEIDMENCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCSMNINGTNGLACIKAINDIKGDVIIYPLPHMSVIKDLVSDMTHFYAQYESIEPWLKAETIDITSGERLQTPEDRDKLDGLYECILCACCSTACPSYWWNANKYLGPAVLLQAYRWIIDSRDEHASERLDQLEDSFKLYRCHTIMNCTKTCPKGLNPAKAISEIKKKMFERHGV
>NZ_LS398547.1|WP_109489933.1|641590_642458_+|IS630-family-transposase
MARSYSYDLRMKIFKAVDDGLSIVKACKIFNISRNTIYRWKHLKRETGDIKAKPYGPAKGYNAKIDLKEFEELIINHHDKTSKELSIILGNRLQRTRINYYRKLLGYTYKKTHFHPKRDTVLRDEFIEKIKQISKENLVFIDESGIEDNACREYGWSIKGTRCYGNKAYQHKSRVSMIAGLCNNQIIAPVIFEGNCNKAIFTTYVETILIKELRPGQIVIMDNINFHKNNTIKVLIESVGCSILFLPTYSPDLNPIEHYWFKIKNEIRKVTPQFKDIRIAVAHLMKFI
>NZ_LS398547.1|WP_174182849.1|643508_644219_+|AAA-family-ATPase
MQGSLIVVDEAGMVGTKAYAELFRVVRNNYCQLILAGDEKQLASIERGGMFEMLSNNFGSHVLIDIRRQSENWSREAATKFAESNILSGITLLRQNNCVRFDNTLQDSMSKLIYNWSLSKFKPHEKLVITVRNKDVDILNSSIRSLLKANGTLKGTEYERSIDGRKELYMAGDRIVFQTSDKDLQIQNSEFATLTSVSKNKFIAKTDTGKEVSFDSVKYNLNMAMQVLFIRSRELL
>NZ_LS398547.1|WP_174182850.1|644275_645058_+|conjugal-transfer-protein-TraA
MTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDLEKERTKTTVFSKIENWFKSIINDINDRSHVNEEYYHFTAKPDQEAKVEKVQQENSIKQCTTKDISTPLFMHIKEQRQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVSTINEAAKVLTSKGAITSIVIHSEGEDFNEMLKNKGAIAVKGLMIPEIMKLINTQNVKTESEQVVKTDIAPKIDLRR
>NZ_LS398547.1|WP_109489934.1|645086_646742_-|ankyrin-repeat-domain-containing-protein
MKNWLSWLYSVVQKLKMFFSKSIDLQDAVISGDIKYVKCFFSQDNTIINLQDEDNYTALHYAVICNQIEIIKIILEYNPNINLQDNLGNTALHYAAACGYTSIVELLLQYDPNCINLCDQNQWTALHYAAANGRIESIKLLLQYNPDSGLQNNLGNTALHYIATYGYADIVELLLKHSSDVINLLNQNKCTALHYAALHGNIGSVKLLLKYNSKISNLQDICGNTALHYAAECGNTKIIKFLLKHNPCVINLLDEDNWTALHYAAAHGNIGSIKLLLKYNSKISNLQDIWGNTALHYAAARCHMDSVKLLLNHNLEIELQDYLYIDIINNNALNTYEKEVVELFITHAVKLKHFSKDINSKIVTRNTDFIQNSPNLNELAQRCEQEIQKMKNIKIGSSDKTIYSMYLLPNNTNVLARYANNLEVLDWYKNSKQEFHLYGPEVARTIENGTNRKKLLEGVCKEKISIILNQQYHIVPNNPLSKTQYSKTLDEESHKSITFSQLNNYDTHKIYEYLDNPVLKELQHEYKTIDVNDKKCFFCSLSGEEVVNIET
>NZ_LS398547.1|WP_109489935.1|646928_648023_+|toprim-domain-containing-protein
MAEGAETALSLQQAGIKGNIIASAGISNLRNYSPFPGEKIIIAADNDSKNSITNNTVIKAAKMLEMKGAITCIIKPPENGDFNNLLQSCGEQSIRDIIEPEITKLTKAVETTKLTQTENNSIEKQNDITNIKELYNKSSSLYYFKQEEEAKVETIVVNKYLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQAGVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKGAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
>NZ_LS398547.1|WP_109489936.1|648074_649082_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MTKQLKHDSLAKTIMSDPVAAQEFLEYYLPSDFKSLIDLSQIKVEQESYIEESLKKKYSDIVYRVATKKHGNAFIYILIEAQSTVDYWTALRLWRYTLLLCERHKKEKTKLPLVYNLVIYNGKEVYNAPRNLWDLFTDSMIAKQLMTSDYQLVDLQSMSNDEIVRKKHIGMLEYMLKHIHQRDMLKLWEEFLIKFKHVLILDKEKGYIYLRSFLWYTDTKLLESQQPELEQVLAKYLSEEEKSNIMRTIAAKYIDEGIEIGETKGRAEGIEIGEIKGIAKGRAEGRAEGIEIGEVKAKQELARNLLKAGFSVEFISENTGLSKEEVINLKNNIEY

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Crispr_ID: NZ_LS398547_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398547_3

745945-746037

Orphan

Consensus_repeat	Method
AGCTTTATGCCTTCAGCTTTACCTTCAGCTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS398547_3

>merge|NZ_LS398547|3|745945-746037|CRISPRCasFinder
TCTTTTTTTGCTTTAGCTTCACCTTCAGCTTTACCTTTAATCTCACCTAGCTTTATGCCTTCAGCTTTACCTTCAGCTTTACCTTCAGCTTTA

>NZ_LS398547|3|3|745945-746037|CRISPRCasFinder
TCTTTTTTTGCTTTAGCTTCACCTTCAGCTTTA	CCTTTAATCTCACCTAGCTTTATGCCT
TCAGCTTTACCTTCAGCTTTACCTTCAGCTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398547.1\|WP_109489961.1\|730417_730807_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|370610
NZ_LS398547.1\|WP_174182857.1\|729417_730395_+\|TraU-family-protein	unknown	unknown	gnl\|CDD\|377717
NZ_LS398547.1\|WP_045919370.1\|751356_751860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_109489971.1\|747575_748070_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LS398547.1\|WP_109489966.1\|740168_740729_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NZ_LS398547.1\|WP_109489965.1\|738536_738974_-\|transposase	unknown	unknown	gnl\|CDD\|273806
NZ_LS398547.1\|WP_109489972.1\|751962_752529_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LS398547.1\|WP_045918667.1\|757974_758355_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_LS398547.1\|WP_041621750.1\|731861_732497_+\|conjugal-transfer-protein-TraN	unknown	unknown	gnl\|CDD\|369160
NZ_LS398547.1\|WP_045919371.1\|750543_751353_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NZ_LS398547.1\|WP_109489726.1\|739184_740153_+\|IS110-like-element-ISOt5-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_LS398547.1\|WP_045919512.1\|752826_754275_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NZ_LS398547.1\|WP_109489967.1\|740780_741875_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|274285
NZ_LS398547.1\|WP_109489962.1\|730803_731904_+\|conjugal-transfer-protein-TraN	unknown	unknown	gnl\|CDD\|369160
NZ_LS398547.1\|WP_045918669.1\|754283_755999_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371642
NZ_LS398547.1\|WP_109489973.1\|758351_759914_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_LS398547.1\|WP_109489963.1\|735730_736762_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_LS398547.1\|WP_109489970.1\|746943_747534_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LS398547.1\|WP_109489968.1\|745315_745771_+\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_LS398547.1\|WP_045919443.1\|749912_750176_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LS398547.1\|WP_109489961.1\|730417_730807_+\|conjugal-transfer-protein	gnl\|CDD\|370610	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein. This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.	1.16047e-20
NZ_LS398547.1\|WP_174182857.1\|729417_730395_+\|TraU-family-protein	gnl\|CDD\|377717	pfam06834, TraU, TraU protein. This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.	2.88771e-120
NZ_LS398547.1\|WP_109489971.1\|747575_748070_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.71293e-08
NZ_LS398547.1\|WP_109489966.1\|740168_740729_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.13774e-53
NZ_LS398547.1\|WP_109489965.1\|738536_738974_-\|transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	6.82564e-05
NZ_LS398547.1\|WP_109489972.1\|751962_752529_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.03515e-22
NZ_LS398547.1\|WP_045918667.1\|757974_758355_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	6.36106e-31
NZ_LS398547.1\|WP_041621750.1\|731861_732497_+\|conjugal-transfer-protein-TraN	gnl\|CDD\|369160	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilisation (adhesin) component of the F-type conjugative plasmid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.	6.1953e-73
NZ_LS398547.1\|WP_045919371.1\|750543_751353_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	1.87174e-51
NZ_LS398547.1\|WP_109489726.1\|739184_740153_+\|IS110-like-element-ISOt5-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.26706e-31
NZ_LS398547.1\|WP_045919512.1\|752826_754275_-\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NZ_LS398547.1\|WP_109489967.1\|740780_741875_-\|toprim-domain-containing-protein	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	2.53132e-12
NZ_LS398547.1\|WP_109489962.1\|730803_731904_+\|conjugal-transfer-protein-TraN	gnl\|CDD\|369160	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilisation (adhesin) component of the F-type conjugative plasmid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.	1.65468e-23
NZ_LS398547.1\|WP_045918669.1\|754283_755999_-\|hypothetical-protein	gnl\|CDD\|371642	pfam11638, DnaA_N, DnaA N-terminal domain. This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.	6.97241e-06
NZ_LS398547.1\|WP_109489973.1\|758351_759914_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_LS398547.1\|WP_109489963.1\|735730_736762_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.05956e-22
NZ_LS398547.1\|WP_109489970.1\|746943_747534_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	9.91871e-31
NZ_LS398547.1\|WP_109489968.1\|745315_745771_+\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	1.01715e-16

>NZ_LS398547.1|WP_109489968.1|745315_745771_+|conjugal-transfer-protein-TraD
MANLMQQKITLQQKKARLIMDEVNLKIKERKMRTRRLIEMGGLLAKANLDHLPTNTLFGAIVSLKETLTQHPNVQDHWTTIGKDIFDKEQQNKAAVILKFSSKPDENTKRHIRLHGLKWNSFRQEWCGHVKDIEALKYGLLNVQYSIELVV
>NZ_LS398547.1|WP_109489967.1|740780_741875_-|toprim-domain-containing-protein
MAEGAETALSLQQSGIKGNIIASAGISNLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKYLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQAGVEGKILCAIEAENLQNYNPGSKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
>NZ_LS398547.1|WP_109489966.1|740168_740729_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MTKQLKHDSLAKTIMSDPVAAQEFLEYYLPSDFKSLIDLSQIKVEQESYIEESLKKKYSDIVYRVATKKHGNAFIYILIEAQSTVDYWTALRLWRYTLLLCERHKKEKTKLPLVYNLVIYNGKEVYKAPRNLWDLFTDSMIAKQLMTSDYQLVDLQSMSNDEIVRKKHIDTVIRIKKRNNNFIKKM
>NZ_LS398547.1|WP_109489726.1|739184_740153_+|IS110-like-element-ISOt5-family-transposase
MIMNSIIVGIDVSKETFDAAVLINNKVQTRKFNNNSEGFNKLVTWLKSRGTGHVCMEATGIYWKNLAKYLYDYGYKVSVVNPARIKGFAMSKLSRTKTDKADSVLIADFCKAMKPEAWYPQPLYIQELQQLVNRLNVLIKHKTQETNRLEGASKAIANNIQMHIEFLETQIKEIEQLINDHIKNNKDLHNKAMLLESIPGIGAKTQAVVLAFLADIEKFSSAKQVVAFVGLNPKHRQSGSSVRGASRISRTGNSDLRKSFYMPAMSALRHNCIIKQFSQRLSDTCKPKMLILIAAMRKLLHIIYGVLKHNSPFNPNVLINQK
>NZ_LS398547.1|WP_109489965.1|738536_738974_-|transposase
MLEYMLKHIHQRDMLKLWKEFLIKFKHVLILDKEKGYVYLRSFLWYTDTKLLESQQPELEQVLAKYLSEEEKSNIMRTIAAKYIDEGIEIGETKGIAKGIAKGRAEAAQELAMNLLKAGFSVEFISENTGLSKEEVINLKNNIEY
>NZ_LS398547.1|WP_109489963.1|735730_736762_+|tetratricopeptide-repeat-protein
MCYRKEALQIGNSFLKLKKYQEAIENFNIAIKYDPSYTLAYNSKGMALNNLGKPKEAIENFNLAIKYDSSFAEAYNNKAVSYRELEKNKEAIILCNTAIKYKPNFAEAYNNKGASLGILGQYEEAMENFDIAIKYEPTNPEAYYNKGIALMNLGYIQNAIENYDIAIKYRPNYSEAYHNKGLTLAFLGQMQNAIEHFDLAIKYDPSYLKTYCNKGYILSLLKRYSEAIESCNIAIKYDPNYADIYYNKGMTLEKLGKHQEAVENLDIAIKYKPNFAENYLEKGISLVSLGQYSKAKENFNLAIKYMPNLIAEYEATIKKLTELENFTIAKDYEQKLQILKKYS
>NZ_LS398547.1|WP_041621750.1|731861_732497_+|conjugal-transfer-protein-TraN
MLHSSLRNNSIFCLGGNCNTPTIIPNRDIAKVAHLAMLNQMSKDIKTNPVSVFSGKHRKCKKDVFSFLNCCSSMTGWGRDIGLSQCKSKEQELALYRKKGYCYYIGTYCSSRIPILGICLARKSTYCCFQSKLARIFQEEARKQLKIDFGTPECPKCRGLTVKELQKVDFTKINMDELFGDILTKAQNSMNKDIIAGIKDKVHRMQQSQSK
>NZ_LS398547.1|WP_109489962.1|730803_731904_+|conjugal-transfer-protein-TraN
MRLLSILTLIVLNISSCIASMQSSYNEASNYNVNLGNSSNTQELFHQGSNVNYPNNDEDLTYHGRNQLGTQSGAMLFQAENSKNNALTQHNINDQNYMIANSMRIESDPLSALDSSNFVTQTSTTNTEIIQSCTEGSKFNIELIRELNVECRLDNVWLPWQNRQMEFATEKIKENHSNWLKSRSDVYDESGSQIYCLVDDPEAIERQMKRAIANRLGASTQHIGRNFLLEVNEKICILHYDYRDKTQELRKVAEYWKVLNPELEQLTESNECYEVNRINYESGDRVFFDKFKVNRPYWKQKIVFSCTSDPKDGCKHLKIQNCELKNSTCQKSVANICLLWQHDYSCSTEKHKQCYTHHCVITQSFV
>NZ_LS398547.1|WP_109489961.1|730417_730807_+|conjugal-transfer-protein
MVIRVMMLMVLLFVNNANANAFFLDKQKTFIFVSFSMSDEALKTYFAESQKAGAQLIMRGLINNSFTQTKNKTMELGISFDIDPCLFEQYKIDVVPVIVIDDKKRGLTKKLTGHIPLAIAIEIMNENTQ
>NZ_LS398547.1|WP_174182857.1|729417_730395_+|TraU-family-protein
MKELVILLAILMSITANSCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNASGRLICLCPKPGIPVPVPGIPVGFWEPVRLVDVTKSPMCMVSLGGLSFGSATQKGMKDEAEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNSETLLFQNVAAYQACIADCMSCSAGLLASDYAFWCAGCQGMLYPFTGTAAAHNGGVGTSVLMVSKFMARMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEAIWQAGREFPVNGEDFGYLIWRKRDCCLL
>NZ_LS398547.1|WP_109489970.1|746943_747534_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MLAFLNCEHINKLLDKLDLINHSFDKRINLDKVEKAIFYVKKYHGNQKRDTGEPYYMHPLEVARMVADYSFKTDTIITAILHDTIEDTTLTKEKIAIEFNDNIAEQVVALTRNIDGKKTSSMKMIKTLVNQDKVELLLIKLLDRLDNIKTIFIKPVKRRQEIILETQQEFIPLAEYLKLPEIAIELNKYCELYTTK
>NZ_LS398547.1|WP_109489971.1|747575_748070_-|HAMP-domain-containing-histidine-kinase
MSHTIKSGDFGIQAKVNNTIRALKPFTENKGINLSCNFKNDIKDLIIVNSTQIQKVLTLLICNATNSQCSEISVEVDLLPSTNKKTNYRILQLIVRNNGIGISAEKVKKINNELRNLHIKSYAVLESELLLVKPFIHEMTGKIKLESQQDKYTAFTCSIPIEVR
>NZ_LS398547.1|WP_045919443.1|749912_750176_-|hypothetical-protein
MSIGNEGQQKNKNIQSKLLLRHLAAGDKELLKLTHQIKTLNLNIIDVFKQLKSESEDVRTLQSEITENKKSTLREAICHIPISLANS
>NZ_LS398547.1|WP_045919371.1|750543_751353_+|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MSVAVANKSKPFLHWIGSKRRIVNKLIEHLPQGPHYNYYEPFLGGGALFFQVRHLFKQCFLSDINLDLITSYNAVKNNPNEVNRLLSLYHKHHSKDYYYKVKNKYSNNPNEITAKFIYLNKYSFRGIYRVYKNGQSAQTFSGECYIKLHIASRINQCSSLLHGVSIYATDFSFIEPQQNDFVYFDPPYHKSGERFYTRLPFDEKDQIRLRDFVQELTNKGVKIMISNNNTAFIRDLYKDFNINTVTVVYSINEQRNPVNELIITNYKTY
>NZ_LS398547.1|WP_045919370.1|751356_751860_-|hypothetical-protein
MSILKLLLQPCYAVMLAFVVLSSPSICTANNNVNFNAFKVSVDTSQFYIKFSTGIATNYDTLEAGIGYRLDRHRMDVRLGFMCHHNCRDNFVQGNYYYNIIEGNKASIFVTGGLVSAFNSDSGTGIDLGVGTTINLSRDTYLDIECSTIANYRPLPIHIRFGLRVHI
>NZ_LS398547.1|WP_109489972.1|751962_752529_-|ankyrin-repeat-domain-containing-protein
MNKDSTLVNSKYKNGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPTYCNDHIALLLKYNADVNIENSQGNTPLSDAVECRCIEPLAIMLKHNSTGINKKYDEGETLLHIAVRNEIIDVIQLLIDYGADIDAKDDNGMTTIDYAAKSGNADVFNFLTEQSVPWY
>NZ_LS398547.1|WP_045919512.1|752826_754275_-|replicative-DNA-helicase
MEKDLAKIAPSNIQAEQMILGAILINNRALYNINEFLLPEHFYEPLHGKIYKSINLIISKGISATVISLKNMLGNELAFEKIGGVDYLAKLTTLALSIVNVNEYGKIVYDLALRRYLIEIGEKIVTNAYSSTLADLAISQIETAESQLYDLGARGTLSKGFTKLQTSIEESWTSISSAIKNKNSINGISSGLLDLDSKLGGFKNSDLIILASRPSMGKTALGVNLAINACKYFLSSSTQQNSKVSNIKPSVGFFSLEMSSQQISTRILSIESEINSSALFNGKIGEQDVDKLKTVQDEIQKWNFFIDDAPAISISAIRSRARRLKRTHNLAILFIDYLQLIKIDNRRSQYNRVQEISEITQSLKALAKDLNIPVIALSQLSRAVEQRSDKKPLLSDLRESGSIEQDVDIVMLIYRNEYYLSRSEPDPGTPEYTEWVTKQNKCYNTAEIIVAKHRNGPVGTVKLHYNSRYSKFGNIVKNYQQA
>NZ_LS398547.1|WP_045918669.1|754283_755999_-|hypothetical-protein
MAQNLRNFASNNCKIANNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSLMVYRLQIYYNKDIDELQESYYFFEKELNLRYRRVRQCLVELRNAGFIKVENRTIIKGNLKLRNVLCVKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEISGEPEKSFRYIYRYNNNKKNNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVGNEKEDQHQQQNLNFYELSDFSNKKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNKYPNRHFANKTAVLNYMAKALANELLTTEQANSGNFGFNDVGRFKEQYLANIESDTDRSMKAQLKRKIAGVFEADMAYQILTSCDFVAAVKNKYYIKLIKNITLSGHIKFKILQEVRAVHGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYLSELSKELGSNSTWYKVRESLIKSYGQAIDKSWFSSLKVVNEDSVNKKIFIKAKTEFEDSYIRENYLKDLESAFKAQGFSFELVKFSNFNKI
>NZ_LS398547.1|WP_045918667.1|757974_758355_+|preprotein-translocase-subunit-YajC
MSQDNNINTDNTNNNITVVDQTIDDTKTAIHWEWINIIPLVLVFTVVYFLLIRPQEKKRKEHEQLIRTIKKGEQVITTSGIYASIVSIDESTDIITLEIAPGTKIKILRAAIADVISRKPASKGSK
>NZ_LS398547.1|WP_109489973.1|758351_759914_+|protein-translocase-subunit-SecD
MKQFLFNKIFITVLITATALCFVVPNFFDTTKYQWLPQKTINLGLDLKGGSYVLLQLDFDTYVTEQLNIIVGNLRKELRNNKIGYKELKIQKQYIHLELRDSDARFKVENLLRNLEPSILIKFSQNNKLHIGFTDHKLSELRESLTENSMEIIRMRVDSSGTTEANIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGTVAQDQRISKDLMLVKEQNNPENKLLVRRQPTISGDLLTKANVSFNKYSQPVVSFAFNSLGTKLFADITKEYQGRRLAIILDGKLLSAPVISEPILGGAGMISGNFTIESAKELSLLLKSGALPAALSVIEEKTIGPTLGSDSIHAGKLAGCIGFVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQATLTLPGIAGIILTIGMAVDANILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAILLYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIKLSTTTICKR

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Crispr_ID: NZ_LS398547_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398547_4

1087360-1087430

Orphan

Consensus_repeat	Method
CCTTCGGCTTTACCTTCAGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS398547_4

>merge|NZ_LS398547|4|1087360-1087430|CRISPRCasFinder
GCTTCGGCTTTACCTTCGGCTTTACCTTCAGCTTTGCCTTTAATCTCACCTAGCTTTATGCCTTCAGCTTT

>NZ_LS398547|4|4|1087360-1087430|CRISPRCasFinder
GCTTCGGCTTTACCTTCGGCTTT	ACCTTCAGCTTTGCCTTTAATCTCA
CCTAGCTTTATGCCTTCAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398547.1\|WP_174182862.1\|1081688_1082102_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274289
NZ_LS398547.1\|WP_109490440.1\|1075418_1076105_+\|conjugal-transfer-protein-TraN	unknown	unknown	gnl\|CDD\|369160
NZ_LS398547.1\|WP_045918906.1\|1088301_1088880_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LS398547.1\|WP_045919222.1\|1092914_1093733_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NZ_LS398547.1\|WP_109490441.1\|1086745_1087036_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_109489772.1\|1072891_1074148_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LS398547.1\|WP_109490442.1\|1101956_1103051_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|274285
NZ_LS398547.1\|WP_109490095.1\|1095903_1096771_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_LS398547.1\|WP_045919657.1\|1084906_1085635_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LS398547.1\|WP_109490096.1\|1097994_1099140_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_LS398547.1\|WP_109490090.1\|1076101_1076800_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372692
NZ_LS398547.1\|WP_045919656.1\|1084402_1084864_+\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_LS398547.1\|WP_109490091.1\|1078099_1078591_+\|conjugal-transfer-protein-TraG-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|184287
NZ_LS398547.1\|WP_109490094.1\|1093736_1094240_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_109490093.1\|1091286_1092154_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_LS398547.1\|WP_109489838.1\|1080066_1081035_+\|transposase	unknown	unknown	gnl\|CDD\|226077
NZ_LS398547.1\|WP_045918630.1\|1071706_1072873_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379610
NZ_LS398547.1\|WP_109490099.1\|1104883_1105681_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|372578
NZ_LS398547.1\|WP_109490098.1\|1100909_1101905_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NZ_LS398547.1\|WP_109490097.1\|1099145_1100900_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|313610

Protein	Function_ID	Function_description	E-value
NZ_LS398547.1\|WP_174182862.1\|1081688_1082102_-\|hypothetical-protein	gnl\|CDD\|274289	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.	0.000133551
NZ_LS398547.1\|WP_109490440.1\|1075418_1076105_+\|conjugal-transfer-protein-TraN	gnl\|CDD\|369160	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilisation (adhesin) component of the F-type conjugative plasmid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.	2.56912e-78
NZ_LS398547.1\|WP_045918906.1\|1088301_1088880_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.33565e-35
NZ_LS398547.1\|WP_045919222.1\|1092914_1093733_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	1.77456e-51
NZ_LS398547.1\|WP_109489772.1\|1072891_1074148_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	5.44073e-19
NZ_LS398547.1\|WP_109490442.1\|1101956_1103051_-\|toprim-domain-containing-protein	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	1.03165e-11
NZ_LS398547.1\|WP_109490095.1\|1095903_1096771_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.91567e-50
NZ_LS398547.1\|WP_045919657.1\|1084906_1085635_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.23275e-27
NZ_LS398547.1\|WP_109490096.1\|1097994_1099140_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.4343e-17
NZ_LS398547.1\|WP_109490090.1\|1076101_1076800_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|372692	pfam13728, TraF, F plasmid transfer operon protein. TraF protein undergoes proteolytic processing associated with export. The 19 amino acids at the amino terminus of the polypeptides appear to constitute a typical membrane leader peptide - not included in this family, while the remainder of the molecule is predicted to be primarily hydrophilic in character. F plasmid TraF and TraH are required for F pilus assembly and F plasmid transfer, and they are both localized to the outer membrane in the presence of the complete F transfer region, especially TraV, the putative anchor.	1.41991e-47
NZ_LS398547.1\|WP_045919656.1\|1084402_1084864_+\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	1.44354e-16
NZ_LS398547.1\|WP_109490091.1\|1078099_1078591_+\|conjugal-transfer-protein-TraG-N-terminal-domain-containing-protein	gnl\|CDD\|184287	PRK13735, PRK13735, conjugal transfer mating pair stabilization protein TraG; Provisional.	1.26609e-13
NZ_LS398547.1\|WP_109490093.1\|1091286_1092154_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.0905e-49
NZ_LS398547.1\|WP_109489838.1\|1080066_1081035_+\|transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.91033e-32
NZ_LS398547.1\|WP_045918630.1\|1071706_1072873_-\|hypothetical-protein	gnl\|CDD\|379610	pfam14441, OTT_1508_deam, OTT_1508-like deaminase. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Orientia OTT_1508. Members of this family are present in a wide phyletic range of bacteria,including several intracellular parasites and eukaryotes such as fungi, Leishmania, Selaginella, and some apicomplexa. In bacteria, these deaminases are predicted to function as toxins in bacterial polymorphic toxin systems. Versions in intracellular bacteria lack immunity proteins and are likely to be deployed against their eukaryotic hosts. Eukaryotic versions are predicted to function as nucleic acid (either DNA or RNA) deaminases. Among eukaryotes, some fungi show lineage-specific expansions of this family. Many fungal versions are fused to a distinct N-terminal globular domain. Various fungal versions are fused to domains involved in chromatin function. Apicomplexan versions are fused to tRNA guanine transglycosylase domain.	2.65258e-13
NZ_LS398547.1\|WP_109490099.1\|1104883_1105681_-\|toprim-domain-containing-protein	gnl\|CDD\|372578	pfam13362, Toprim_3, Toprim domain. The toprim domain is found in a wide variety of enzymes involved in nucleic acid manipulation.	0.0011871
NZ_LS398547.1\|WP_109490098.1\|1100909_1101905_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.14746e-61
NZ_LS398547.1\|WP_109490097.1\|1099145_1100900_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|313610	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.	0

>NZ_LS398547.1|WP_109490441.1|1086745_1087036_+|hypothetical-protein
MIVPAVLGGIALYGIYHLCSSKNKTSSLPVNGVDVGTNANTSVKNLNAEKIPTDFLDNDKQAHLYEDPQTCKYEEAAYDDTALQISGQDAIRAEAV
>NZ_LS398547.1|WP_045919657.1|1084906_1085635_-|ankyrin-repeat-domain-containing-protein
MNRLNRLDKLNQLAKNNELTEINLQEFTEEINSSCDKSFHALHRSIIHGNLNIIKLLINKGVSPNIQVGGIHALHWAVITDELEIAEILIDAGADVNQQDCHKTTPLHLAIRNPDIVKLLIGKGANLNIQDNEKKTAYDLAAENNCIDAANIIREELTQSVIKTYEDRLILANELPSVALNLKESKLFGLNTYALEEILKYLNFNDLQSLKEACMVKLYTESNYNTDMLAMGGELSIDDNNA
>NZ_LS398547.1|WP_045919656.1|1084402_1084864_+|conjugal-transfer-protein-TraD
MANLMQQKITLQQKKARLIMDEVNLKIKERKMRTRRLIEMGGLLAKANLDHLPTNTLFGAIVSLKETLTQHPNVQDHWTTIGKDIFDKEQQNKAAVILKFSSKPDENTKRHIRLHGLKWNSFRQEWCGHVKDIEALKNGLLNVQYKLELVPYG
>NZ_LS398547.1|WP_174182862.1|1081688_1082102_-|hypothetical-protein
MHNGVSNISSSYVAMTRHIENLKLYCNKEATKSINSLINQLSRPNEKSASITLKTAHDLEKERTKPTVFSTVENWFKSIINDINDRSHVNEEYYHFTAKPEQEAKVEKVQLKDISTPLFMHIKEQRQYDYDVTILSA
>NZ_LS398547.1|WP_109489838.1|1080066_1081035_+|transposase
MIMNSIIIGIDVSKETFDAAVLINNKVQTRKFNNNSEGFNKLVTWLKSRGTGHVCMEATGIYWKSLAKYLYDYGYKVSVVNPARIKCFAISKLSRTKTDKADSVLIADFCEAMKPEAWYPQPPYIQEQQQLVNCLNVLINHKTQETNRLEGASKAIANNIQMHIEFLETQVKEIEQLINSHIKNNKDLHDKAMLLESIPGVGAKTQAIVLAFFADIEKFSSAKQVVAFVGLNPKHRQSGSSVRGVSRISRTGNSDLRKAFYMPAMSALRYNCIIKQFSQRLSDSGKPKMLILIASMRKLLHIIYGVLKHNSPFNPNVSIIQK
>NZ_LS398547.1|WP_109490091.1|1078099_1078591_+|conjugal-transfer-protein-TraG-N-terminal-domain-containing-protein
MDYVIYTFGGGDLLWHVFNGIGRVFASNSEYFTPVGHLALTIGGIWAATRAIFRGNIGIFAMEWFFPSIFIFTLLFSPKSTVWLKDEVSMNAPVKVDNIPIGIAMFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIQDPVTFTTY
>NZ_LS398547.1|WP_109490090.1|1076101_1076800_+|conjugal-transfer-protein-TraF
MSRLLMFMILISHLSTVDALPTGFLWYNDKHGHELDDSTSKLMRRAHDHRIEELKEQFNRAQRIALDNPTLENVITAQRLQKQIMEKAHKCATMWQLATLLDYQLINANEPANSLHRKLYQEKSEQKNDLKLKNIAKNCELILQVKQDCLLCKAFIPIVQGFANKYAFQLLAVSKNNELLNKLNPKHILPVLYLVASDGKKIYSVARGIISEDKIIDNILAIDRYYHKLETR
>NZ_LS398547.1|WP_109490440.1|1075418_1076105_+|conjugal-transfer-protein-TraN
MCLLWQHDYSCSTEKQTMLHSSLRNNSIFCLGGNCNTPTIIPNRDIAKVAHLAMLNQMSKDIKTNPVSVFSGKHRKCKKDVFSFLNCCSSMTGWGRDIGLSQCKSKEQELALYRKKGYCYYIGTYCSSRIPILGICLARKSTYCCFQSKLARIFQEEARKQLKLNFGTPECPKCRGITVKELQKVDFTKINMDELFGDILTKAQNSMNKDIIAGIKDKVHRMQQSQSK
>NZ_LS398547.1|WP_109489772.1|1072891_1074148_-|ankyrin-repeat-domain-containing-protein
MDKTLRQQVQEYKKLYAIGAKKLDLDKIQTVSTELATYLLFYAIIKDDFHLFKVLVKSGAKIDTVDEFGNLPVHYFNTNLRILEYIVKKDKKCINKQNSLGQTILHIAAKENNYKAVKYLLQSGAKKNIKDNYEDIAENLSSDYDVIVSLKQCTPIIEEIEEADVQKITQGITRSYNISKHSVDSNTRLEIEDNNTDGIALNWPLNYVKHTIFRINSNKEKHKTVKYFVDIAAKQDIKDLWNEIATNYLSSNYGMQISFKLYKSTIEKMIYAAIQQQDIINKLNIGKHDTKLAIKDNKELSFSSEILDIGITFNKEARKKLNLANLHINQDTKHKYENTTKIQVYVSVIDQLEKKLLLTQDEIAIYDTAKCLIESNSRLETENMLSQCVDKSTTLLEQFLLPDELDYVQLLAQNYTNS
>NZ_LS398547.1|WP_045918630.1|1071706_1072873_-|hypothetical-protein
MFATHKKEQLKTALNEAAQYQEKYYQGSRIDGESPISLAGPRIKNLIRDSEQQKKLDYLAKVIAVYCKKKCVAVAYSEDNDEYYISYNTVAHGSDCSKAEYACVNMEVREIVKSFYSDIKHGLNSSNLRKILVDSILNDKNTEKSLMECVLKLVRGYSHIQTGDSSYDFSGIQQLFVNSKNTKNTNIKLDGFSRLGEKYKELRKISNDLEKKLAEELDEEEKKGLISDHNLIHKVKSELSQFHTVKFNLDELLPYFERNEGIENKLYVVKNNSSINEQQHAEMVVLEYVHNKSKVGELSGNVYIGMSKLSCFTCQKVIEYYNNSESNVKLENHGTHGKVYNNWAFPAGILDVVSVDDLIKDLSNSDDCSSIAAFPFGKDSASSDSDGY
>NZ_LS398547.1|WP_045918906.1|1088301_1088880_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MIDFYSESLLNKLFETNVRFNTEIDLDKVEKAIFYAKKYHGQQKRDTGEPYYMHPLEVAYMVSDYIFKTDTIITAILHDTLEDTTLTKKKIVKAFGNKIAEQVSDLTRIKDNKKISSREMIQTFYRQNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIILETQQEFIPLAKYLNLPEIAIELNKYCELYTTK
>NZ_LS398547.1|WP_109490093.1|1091286_1092154_-|IS630-family-transposase
MARRYSYDLRMKIFKAVDDGLSIVKACKIFNISRNTIYRWKHLKRETGDIKAKPYGPAKGYNAKIDLKEFEELIINHHDKTAKELSIILGNRLQRTRINYYRKLLGYTYKKTHFHPKRDTVLRDEFIEKIKQISKENLVFIDESGIEDNDCREYGWSIKGTRCYGNKAYQHKSRVSMIAGLCNNQIIAPVIFEGNCNKAIFTTYVETILIKELRPGQIVIMDNINFHKNNTIKVLIESVGCSILFLPTYSPDLNPIEHYWFKIKNEIRKVTPQFKDIRIAVEHVMKFI
>NZ_LS398547.1|WP_045919222.1|1092914_1093733_+|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MLVSIAISNEPKPFLHWVGGKRRIVNKLIEHLPSGPYYNYYEPFLGGGALFFQVRHLFKQCFLSDINLDLITSYHAVKKNPNEVNRLLNLYHKNHSENYYYKIRDNYYSNDPNDITAKFIYLNKYSFRGIYRLNRDGTSAQTFSDKRYLKLHICSRINKCSNLLAGVSIYAMDFSFIEPKKGDFVYLDPPYHQSGERFYTRLPFDEKEQIRLRDFVYELHNKGVKIMLSNNNTTFIRDLYKDFFITHIGVTYSINEQRNPVNELIITNYKTY
>NZ_LS398547.1|WP_109490094.1|1093736_1094240_-|hypothetical-protein
MNVLKSLLQPCYAVILAFVVLFSSSICTANNNIKFNTSKVSIDTSPFYLKLSSGIATNYGILEAGIGYRQARHRMDVRLGLICSNHFICDFIQANYYYNIIEGNKASIFITEGLLLSVRCCLDINPELGVGTTINLLRNIYLDIECCTMGNYRSSHIHTRFGLRFHI
>NZ_LS398547.1|WP_109490095.1|1095903_1096771_-|IS630-family-transposase
MARRYSYDLRMKIFKAVDDGLSIVKACKIFNISRNTIYRWKHLKCETGDIKAKPYGQAKGYNAKIDLKEFEELIINHHDKTSKELSIILGNRLQRTRINYYRKLLGYTYKKTYLHPKRDTVLRSEFIEKVKQISKENLVFIDESGIEDNDCREYGWSIKGTRCYGNKAYQHKSRVSMIAGLCNNQIIAPVIFEGNCNKAIFTTYVETILIKELRPGQIVIMDNINFHKNNTIKVLIESVGCSILFLPTYSPDLNPIEHYWFKIKNEIRKVTAQFKDIRIAVEHVMKFI
>NZ_LS398547.1|WP_109490096.1|1097994_1099140_+|tetratricopeptide-repeat-protein
MKNIYKLAITIILPLMLLNTAIPAEESKLVQQNSIKDKNVLAKEYFNIGSSFLRLKKYQESIENFDIAIKYDPSYASAYNSKGIALDDLGKLLEAIENYNLAIKHKPDFAEAYNNKAVSYEKLGKDKEAIIFYDLAIKYKPNFAKAYNNKGAALNTLGQYEDAMENFDIAIRYNSSYPEAYYNKGIALMNLGYIQNAIENYDIAIKYRPDYAEAYINKGLTLAFLGQLQNAIEHFDLAIKYDPSCVKSHCNKGYVLSLLKRYSEAVESCNLAIKYDPNCADIYYNKGMTLEKLGKHQEAVENLDIAIKYKPNFAENYLEKGISLVSLGQYSKAKENFNLAIKYMPNLIAEYEATIKKLTELENFTIAKDYEQKLQILKKYS
>NZ_LS398547.1|WP_109490097.1|1099145_1100900_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MNFQNQGNFTRGSQLFAHKLRMFGQGSTNVFIIGLGLSIFWIICRLYQKVFLSSLYYFVIERYVQLKLAIGEHFYDIDQIGIKFYSLRFKKWMHLNAQDFLHEFYTSQHGFKIQQLCEFLINSALLESLIVFAIGVIISIVFFTAQGKKTIIKAKIRGADFVGYKCLAKMLKSAKKASKIRFGGLPLVKNSERLHILITGTTGTGKTNMLNELLPQIRLHKDRAIIVDTTGAFTDRFFDSKCDKLLNPFEKNSEQWLPWNDCFEAADFHDIASSFSNYTPKLDDFFAKNAELVLSEALKLYKDDKDIIKLIHTIIYSDNRQFAKAFRNTAVSGIISESALETSAGIQSTLGKNITSLQYLKPGGSFSIKEWFSNSNETGWLFITANPNQRATLCPLISAWISIAIKALMCRNPNHDNKNMWFILDELPALQKVSSLPVALAESRKYGGCFVAGLQNIHQLEAIYGATECASMLDLFNSKFIFRVSDQVTAYKSALTLGEQEIIETQENLSYGSNTMRDGVNMNNVERKKLLVMPSEIMNLPDLTCYVKLAGNFPIIKLTMQLQNLNTAFVCEYKLLKKLKLVEY
>NZ_LS398547.1|WP_109490098.1|1100909_1101905_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MTKKLKHDSLAKTIMSDPVAAQEFLEYYLPMNFKSLIDLSQIKVEQESYIEESLKKKYSDIVYRVATKKHGNAFIYILIEAQSTVDYWTALRLWRYTLLLCERHKKEKTKLPLVYNLVIYNGKELYNAPRNLWDLFTDSMIAKQLMTSDYQLVDLQSMSNDEIIRKKHIGMLEYMLKHIHQRDMLKLWEEFLIKFKHVLILDKEKGYVYLRSFLWYTDTKLLESQQPELEQVLAKYLSEEEKSNIMRTIAAKYIDEGIEIGETKGIAKGRAEGIEIGEIKGRAEGIEIGEVKAKQELARNLLKAGFSVEFISENTGLSKEEVINLKNNIEY
>NZ_LS398547.1|WP_109490442.1|1101956_1103051_-|toprim-domain-containing-protein
MAEGAETALSLQQSGIKGNIIASAGISNLRNYSPFPGEKIIIAADNDSKNPITINTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIEKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKYLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPTLTIFVKNDKDEITGAKILALNSKTCNKADVPEKSVGTISGSFAEIAQQNPKYSPVTIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKGAVACTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQQRLCLKH
>NZ_LS398547.1|WP_109490099.1|1104883_1105681_-|toprim-domain-containing-protein
MHNGVSNISSSYVAMTRHIKSLKLYCNNEATKSVNSLINQLSRPNEKSASITLKTAHDLEKERTKPTVFSKIENWFKSIINDINDRSHVNKEYYHFTAKPEEEAKVEKVQLKDISTPLFMHIKEQRQYDYDVTILSAEGKTISSFQEIGIDSRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYASTINEAAKALKSKGAITSIVVPSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVKTESEQVVKTDIAQKIGLRR

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Crispr_ID: NZ_LS398547_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398547_5

1278853-1278930

Orphan

Consensus_repeat	Method
TGAAGGCAGAGCTGAAGGTATAGAGATTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS398547_5

>merge|NZ_LS398547|5|1278853-1278930|CRISPRCasFinder
TGAAGGCAGAGCTGAAGGTATAGAGATTGGTGAGACTAAAGGCATAGCTAAAGGCAGAGCTGAAGGCAGAGCTGAAGG

>NZ_LS398547|5|5|1278853-1278930|CRISPRCasFinder
TGAAGGCAGAGCTGAAGGTATAGAGATTGG	TGAGACTAAAGGCATAGC
TAAAGGCAGAGCTGAAGGCAGAGCTGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398547.1\|WP_045918856.1\|1293266_1293596_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_045918510.1\|1289508_1289892_-\|type-F-conjugative-transfer-system-pilin-assembly-protein-TrbC	unknown	unknown	gnl\|CDD\|370610
NZ_LS398547.1\|WP_109490160.1\|1270527_1270962_+\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|237121
NZ_LS398547.1\|WP_109490161.1\|1271333_1272824_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235837
NZ_LS398547.1\|WP_012461430.1\|1269590_1269920_+\|monovalent-cation/H(+)-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|183669
NZ_LS398547.1\|WP_109490158.1\|1268177_1269038_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_LS398547.1\|WP_080943541.1\|1270939_1271341_+\|cation:proton-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236004
NZ_LS398547.1\|WP_109489785.1\|1294969_1295296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_109490165.1\|1293595_1294927_-\|TraB/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319756
NZ_LS398547.1\|WP_109490159.1\|1269916_1270507_+\|DUF4040-domain-containing-protein	unknown	unknown	gnl\|CDD\|237121
NZ_LS398547.1\|WP_109490163.1\|1286860_1287661_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LS398547.1\|WP_174182863.1\|1265639_1268045_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_LS398547.1\|WP_045919683.1\|1295796_1296273_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398547.1\|WP_045919000.1\|1277179_1277539_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212139
NZ_LS398547.1\|WP_045919377.1\|1280840_1281983_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_LS398547.1\|WP_045918998.1\|1272833_1274306_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|235835
NZ_LS398547.1\|WP_045918506.1\|1289915_1290818_-\|TraU-family-protein	unknown	unknown	gnl\|CDD\|377717
NZ_LS398547.1\|WP_109490164.1\|1290802_1293286_-\|TraC-family-protein	unknown	unknown	gnl\|CDD\|274279
NZ_LS398547.1\|WP_045919001.1\|1277519_1277846_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|131032
NZ_LS398547.1\|WP_109490162.1\|1285949_1286666_-\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372692

Protein	Function_ID	Function_description	E-value
NZ_LS398547.1\|WP_045918510.1\|1289508_1289892_-\|type-F-conjugative-transfer-system-pilin-assembly-protein-TrbC	gnl\|CDD\|370610	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein. This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.	1.50455e-20
NZ_LS398547.1\|WP_109490160.1\|1270527_1270962_+\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|237121	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed.	4.8535e-35
NZ_LS398547.1\|WP_109490161.1\|1271333_1272824_+\|cation:proton-antiporter	gnl\|CDD\|235837	PRK06591, PRK06591, putative monovalent cation/H+ antiporter subunit D; Reviewed.	4.54886e-169
NZ_LS398547.1\|WP_012461430.1\|1269590_1269920_+\|monovalent-cation/H(+)-antiporter-subunit-G	gnl\|CDD\|183669	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed.	9.93787e-20
NZ_LS398547.1\|WP_109490158.1\|1268177_1269038_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.3042e-65
NZ_LS398547.1\|WP_080943541.1\|1270939_1271341_+\|cation:proton-antiporter-subunit-C	gnl\|CDD\|236004	PRK07375, PRK07375, Na+/H+ antiporter subunit C.	2.38478e-25
NZ_LS398547.1\|WP_109490165.1\|1293595_1294927_-\|TraB/VirB10-family-protein	gnl\|CDD\|319756	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS). This family contains TraB (VirB10 homolog) and a component of the type IV secretion system (T4SS), and similar proteins. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TraB is localized similarly to related proteins in other systems, but unlike in other systems, Neisseria gonorrhoeae TraB does not require the presence of other T4SS components for proper localization. It has been shown to be expressed with TraK (VirB9 homolog) at low levels in wild-type cells, suggesting that gonococcal T4SS may be present in single copy per cell and the small amounts of these proteins are sufficient for DNA secretion.	6.59512e-72
NZ_LS398547.1\|WP_109490159.1\|1269916_1270507_+\|DUF4040-domain-containing-protein	gnl\|CDD\|237121	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed.	1.66671e-54
NZ_LS398547.1\|WP_109490163.1\|1286860_1287661_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.37107e-16
NZ_LS398547.1\|WP_174182863.1\|1265639_1268045_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_LS398547.1\|WP_045919000.1\|1277179_1277539_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|212139	cd11532, NTP-PPase_COG4997, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from archaea and bacteria. The family includes some uncharacterized hypothetical proteins from archaea and bacteria. Although their biological roles remain unclear, the family members show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, the family contains a single MazG-like domain.	4.52858e-33
NZ_LS398547.1\|WP_045919377.1\|1280840_1281983_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.07265e-23
NZ_LS398547.1\|WP_045918998.1\|1272833_1274306_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|235835	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed.	3.18844e-66
NZ_LS398547.1\|WP_045918506.1\|1289915_1290818_-\|TraU-family-protein	gnl\|CDD\|377717	pfam06834, TraU, TraU protein. This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.	4.8483e-117
NZ_LS398547.1\|WP_109490164.1\|1290802_1293286_-\|TraC-family-protein	gnl\|CDD\|274279	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.	8.56657e-166
NZ_LS398547.1\|WP_045919001.1\|1277519_1277846_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|131032	TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. [Unknown function, Enzymes of unknown specificity].	3.25866e-25
NZ_LS398547.1\|WP_109490162.1\|1285949_1286666_-\|conjugal-transfer-protein-TraF	gnl\|CDD\|372692	pfam13728, TraF, F plasmid transfer operon protein. TraF protein undergoes proteolytic processing associated with export. The 19 amino acids at the amino terminus of the polypeptides appear to constitute a typical membrane leader peptide - not included in this family, while the remainder of the molecule is predicted to be primarily hydrophilic in character. F plasmid TraF and TraH are required for F pilus assembly and F plasmid transfer, and they are both localized to the outer membrane in the presence of the complete F transfer region, especially TraV, the putative anchor.	1.7314e-49

>NZ_LS398547.1|WP_045919001.1|1277519_1277846_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MFPQNELEKIEGIKIYGTKDINKKIPIISFCVVGSLPSELAYIYLKKWGVVLSSGIHCAPWLHETIGTLPTGTLRVSMGNYTTKKDIEHFIKATKDIINRGEYAQVSA
>NZ_LS398547.1|WP_045919000.1|1277179_1277539_-|nucleoside-triphosphate-pyrophosphohydrolase
MHKLVRDQIPKIIENTGRRCNVRVLDETEYYLELKKKLVEEVDEFLTEANLEELADIVEVIYALAKAIGHDVKKLDEVRRKKNSERGSFEQRLFIESTDNSPKILYPIYEFYAYLPRFL
>NZ_LS398547.1|WP_045918998.1|1272833_1274306_+|2-hydroxyacid-dehydrogenase
MLKNIILLYNDMICYIPFTIIGIVGIWNLIIPFLIRKNFIKEILMLAISILHAINAILLYFSYKAGYEHYTTIFSIGSFDFSLRLSLLGSNILLLIAILWPISIIYTIGFLKAHSEPNQAKFLLCTNLCILISNYIVCSANFFTMLICYELLTFATIPLIRHVTSHRTSKVLSKYTQGLYLPSLLFLIPTLVVLQYQYSTTDFVEIANILQSRTLLQVSPVIFALCILCGTAKAAIVPFHSWLPPAMIAPYPVSAILHAVAVVNVGIFCLITGILSVLGKETWLLNYIQYFIGYGIVYTSIKALFQTNIKRILAYSTISNLGIIALTAFMNSHESLLATITHIIAHSIGKITVFYSAGCLYTISKCTNVEDLTSMSYKAPIITSCLTIGSLSLIGIPPLAGFFSKHHIILEAANEHNYLVIAITVFSGITSCLYLSKIIKTAYSKIDNECNINSTNNIHSEQMIPKHMLYSTVSCASLVVLIPIINALIM
>NZ_LS398547.1|WP_109490161.1|1271333_1272824_+|cation:proton-antiporter
MSNIFQAVKDHLVILEVLIPFFGSLIVVLYKKVESALIVSRLCAILGIILGIYGVLSMINSPPYFYAIGNWQAPIGIEYRVDQVNQIIIVFSYFILFLLLTFNSQLIKTNLLSSLNPSRSHLLYSILLLLHTGFCGIILSNDLFNIYVFIEIASLASYTLVSQGVDKRALIGSINYLILGTIGATFILIAIGFILSNTGSLNITDIISRLQQQRTKTLIAAIMFYITGCLLKVAMFPMSSWLISTYKYTSSVILSYFAPISCMVGFYILLYFVYQIIGITNINTLHSYYVINALGLAGAIFCSGYAVQQSNLKSIMAYSVLAETSYISLMAFNIQSSTIGAQIIVILLTSCILKSIIYSLISRIEVHYHDSELKHIAGIGSTYPAFGILFTLALISNLGLPLTIGFVNKLNIFLTVLQSLGYFGIIILAISSCMSFNYHYKIFHYLYSTQQTSHSSFMLNGNNSVAIILTIISYLMLIFYNHLLVYLKPFFLPKIM
>NZ_LS398547.1|WP_080943541.1|1270939_1271341_+|cation:proton-antiporter-subunit-C
MIMILTSKLIYFCSAVLLSLGLYIILSSYNYVKKTIGLAVFQNAVLIFYIALAKAKEGIVPIDQCFNQLSQHCSSITYSSPVSHVLMLTAIVVGIATMSVSLSIIRQIYQSFNSCNENDILLELQKMELKPDE
>NZ_LS398547.1|WP_109490160.1|1270527_1270962_+|Na(+)/H(+)-antiporter-subunit-B
MRNNNIIVASIIAKIITPYILLFALYIQINGEVSPGGGFQAGAILASAVIGYDIIYPQQLIKYNLAILPLSIIGALGVMIYGLTGLLALFYGKNYLNYYVITCTKYSQSLGIFIVELGVGIAVTASLLIIYYVFVINNDYDTNK
>NZ_LS398547.1|WP_109490159.1|1269916_1270507_+|DUF4040-domain-containing-protein
MMLSANYFPNLPLEFNIANVFLYIFCFLLIIVNIYLALSVNLLKSILLMSLSSLIICVCYLLMDAPDVAMTEASLGACLSTAILLKIAKKLQLSFNSAEKLPVYKNILCSLVCILFAVCFMLVCYDLPDFGQLSTPMHQHISKYYINNTTEQICIPSFVAAILASYRGYDTLGETTVILCAGISVILIFANKKTNQ
>NZ_LS398547.1|WP_012461430.1|1269590_1269920_+|monovalent-cation/H(+)-antiporter-subunit-G
MLHILINSCGFFFLFCGLFFIISSVVGLSRFHDFYAKVHAAGVADSCGIPMSLIGLTIINYQSISIFKILILITLIYILGPTAAHILLKTWYNCNSQSESTKINTDSNT
>NZ_LS398547.1|WP_109490158.1|1268177_1269038_+|TIGR01459-family-HAD-type-hydrolase
MYEYKTPINLSDIVKNYEVILFDLYGVLLENNIPYTKTIEVVNNLSKSTKICFVSNTPQPVQHSSNRLNIYGINATPQNVYTSGEIAREILKNSSKNLNIDNPIVFHLGPDFKKTVLEDLPIKTTEKIHDANILLLTAFEDYEEKLDQYNSIFQTAIANKAVCLCANPDVINPFENKNRYCAGYFSAIYKSMGGKVVYSGKPHSEIFQAVLNTLALNVKKEKILMIGDTLETDILGANNIGIDSALVLTGNAFRIAKASNVHDQINILKNAFKLKNIYPKYIINII
>NZ_LS398547.1|WP_174182863.1|1265639_1268045_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MPTNQKLDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGGCNKIEVILNKNGSVTVRDNGRGIPVDIHQEEGVSAAQVIMTQLHAGGKFDQNAYKVSGGLHGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSIAIFTSVEFSFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVKFFYTGGVESYVQYIDKAKAALHSTISFHQTDSHGATLELAMQWNDSFYENIVCFTNNIRQRDGGSHLQGYRSAVTRAITKYTKDHFPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEARAIVEGIVYEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPGKLADCQQRAPEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSDQIGTLITALGTGIGSDDFAIDKIRYHKVVIMTDADVDGSHIRALLLTFFYRYMPTVIEKGYLYIAQPPLYKIKRGANELYLKNDQALYDYLLKIAIDEIDVIKSSGDRISNAELTTIVASIRKLTAVLNKVGNKLNKYIAEILAITRNLSADTFNSIYQDKLSSLIQQMLPTQTLDKTNWQVEVHDDYMQFYCFVRGIKKAQSLFKSQLESPEFVSLIRLGQELSELFENQLTLKHKSEEINISLPSALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITDFDEAEEVFSTLMSNIVEPRREFIQANALNVNNLDV
>NZ_LS398547.1|WP_045919377.1|1280840_1281983_-|tetratricopeptide-repeat-protein
MKFIKYIYITAVLLLLNTDILAEGNNKLVQHDLIQERTIIAREYSNIGNSFLKLKKYQEAIENYNIAIKYNPSYAIAYNSKGMVLNDLGKPLEAIENFNLAIKYDSSFAEAYNNKAVSYRKLEKNEEAIILCNTAIKYKPNFAEAYNNKGVSLAILGKYEDALENFDIAIKYRSDNPEAYYNKGIALMNLGYIQEAIENYDIAIRYRPNYSEAYHNKGLTLVFLGQLQNAIEHFDLAIKYDPNDATAYRNKGYVLTMLKRYPEAIESCNLAIKYNPNCAEAYYRKGMIFEKLGKHQEAVENLDIAIKYKPNFAENYLEKGISLVSLGQYSKAKENFKLAIKYMPNFIAEYEATIKRLTEFKNFTIAKDYEQKLQILKKYS
>NZ_LS398547.1|WP_109490162.1|1285949_1286666_-|conjugal-transfer-protein-TraF
MNPLAIMLIMGLLNYLSIELATANSLPTGFLWYNDKHGHELDDSTSKLMRRAHDHRIEELKEQFNRAQRIALDNPTLENVITAQRLQKQIMEKAHKFATMWQLATLLDYQLINAHEASNSLHRKLYQEKSEQKNDLKLKNIAKNWGLILQVKEDCLLCKAFMPIVQSFANKYAFQLLAVSKNNELLNKLNPKHIVPVLYLVASDGKKIYAVARGIISEDKIIDNILAIDRYYHKLETR
>NZ_LS398547.1|WP_109490163.1|1286860_1287661_-|ankyrin-repeat-domain-containing-protein
MNNNDLLRELCNAANNGNVESIKQLLAQDNAVNAINLQDNNDQTPLHFVTKHRFIKITASLNFKEYWSSYDNRDKGFVDVAKLLLNAGANPNKQDNNGQTPLHLAIEWHYLPAKLVMLARDEVDIPCRSTDLINVLCESNCINFGLKNVDGRTAVDLALFLKSDKHDDGIAEHLQEKRLLWRKEQIKVANNSLVIIAENKEQILKLKPDSEKTDADKFLENWRELARLGLDEQILDTLQDDYLGTFQQLNEERKVALGEDSIHGMI
>NZ_LS398547.1|WP_045918510.1|1289508_1289892_-|type-F-conjugative-transfer-system-pilin-assembly-protein-TrbC
MVIRVMMLIVLLFVNNANAFFLDKQKTFIFVSFSMSDEALKSYFAESQKAGAQLVMRGLINNSFTQTKNKTIELGISFDIDPSLFEQYKIDVVPVIVIDDKKRGLTKKLTGHIPLAIALEIMNENTQ
>NZ_LS398547.1|WP_045918506.1|1289915_1290818_-|TraU-family-protein
MGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNASGRLICLCPKPGIPVPVPGIPVGFWEPVRLVDVTKSPMCMVSLWGLSFGSATQKGMKDEAEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETLLFQNVAAYQACIADCMSCSAGLLASDYAFWCAECQGMLYPFIETAAAHNGGVGTSVLMVSKFMAKMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEATWQAGREFPVNGEDFGYLIWRKRDCCLL
>NZ_LS398547.1|WP_109490164.1|1290802_1293286_-|TraC-family-protein
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRGSIGFVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKSGSVKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTENVNAQQLLKFMRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVIMFDKTKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGVFGQNKTSGIGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGRYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPMLQRALISVWQKKGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSCKAQLSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTMVKGDRSRPFLIMIDEAWKLLAGKRSGEFIEEAGRIARKYNGSIALATQQLTDYFCQEGSASKKAFENSSHKIILKQNSESFKAMRANHKLAGFVDEDWKLNLLQSVHSNPPYYSEIAIYSPNVSGVIGRLMIDPFTLLLTSTNARDYQAIEDHMAKGMNVSEAINYVILEDL
>NZ_LS398547.1|WP_045918856.1|1293266_1293596_-|hypothetical-protein
MKFLLLLLGCMSLTSFFYRSTFDCKIPKGLKCKSLYEIKNMVAQGAFDIDNLEKVETSKTKSKRRCILCYRQAKAVQGVDVVNKSPKKPKKYLINLFKSKQSQGERKHT
>NZ_LS398547.1|WP_109490165.1|1293595_1294927_-|TraB/VirB10-family-protein
MEQDNSDNNNTKEEDLELNDKLKAESAVRSNSKLSELTNIIRRKPVIALTFISITIMVVSYFLSESGKTKESIIFIENRESREAISGIEQAVDLRAKWTEEILNEVKTLKDRFESVIDSRYLEITAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNHHISNSPHDNKTEQAPVVAVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYNKYKTDQIKNAILIGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVFSSIAKFLQSKAIKPDMLPTLNLVAGGQQQEFQIGDALQSGAYAGASNAFDKLADFAIKRADSMSPVVLIASGRVIDVVFKKGFDLCEPKKKPHNLTYSQSTNNEKVNLHNKFDQSQKLEEHL
>NZ_LS398547.1|WP_109489785.1|1294969_1295296_-|hypothetical-protein
MFIYQKTRLNMLNPTFGIQWNNVVVGLLIIITACVFSFEPALADTLEGQLNKIDGLFSGKLKTIGISSATILSSIWAVARGNIKLAGVMVAIGVILGFYLVNCRWYEN
>NZ_LS398547.1|WP_045919683.1|1295796_1296273_-|hypothetical-protein
MSIRVLRFMIGLIALGKFSDIYAVEYTLQDDELLKLEISDSGPTRINLKDEKINDIFMYPQNAAEVVVHESGFLFIAPREEGNKVYLTVIGEYKTIQDLMLTFTPKTPSPIMLVNAATKIEEKDNSKQNNNNLFSNDLNTKELTAKLSKKQSRNTKEK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	NZ_LS398547.1	455020-455046	0	1.0
NZ_LS398547_4	4.1\|1087383\|25\|NZ_LS398547\|CRISPRCasFinder	1087383-1087407	25	NZ_LS398547.1	884842-884866	0	1.0
NZ_LS398547_4	4.1\|1087383\|25\|NZ_LS398547\|CRISPRCasFinder	1087383-1087407	25	NZ_LS398547.1	914007-914031	0	1.0
NZ_LS398547_4	4.1\|1087383\|25\|NZ_LS398547\|CRISPRCasFinder	1087383-1087407	25	NZ_LS398547.1	1110214-1110238	0	1.0
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	222517-222534	0	1.0
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	738685-738702	0	1.0
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	877207-877224	0	1.0
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	907912-907929	0	1.0
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1079453-1079470	0	1.0
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1625736-1625753	0	1.0
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	648909-648933	1	0.96
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	738662-738686	1	0.96
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	877184-877208	1	0.96
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	907889-907913	1	0.96
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	1625752-1625776	1	0.96
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	NZ_LS398547.1	330715-330741	1	0.963
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	NZ_LS398547.1	746038-746064	1	0.963
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	NZ_LS398547.1	884855-884881	1	0.963
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	NZ_LS398547.1	914020-914046	1	0.963
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	NZ_LS398547.1	1110227-1110253	1	0.963
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	NZ_LS398547.1	1449519-1449545	1	0.963
NZ_LS398547_4	4.1\|1087383\|25\|NZ_LS398547\|CRISPRCasFinder	1087383-1087407	25	NZ_LS398547.1	746025-746049	1	0.96
NZ_LS398547_4	4.1\|1087383\|25\|NZ_LS398547\|CRISPRCasFinder	1087383-1087407	25	NZ_LS398547.1	1449506-1449530	1	0.96
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	161203-161220	1	0.944
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	314346-314363	1	0.944
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	648893-648910	1	0.944
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1101106-1101123	1	0.944
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1505644-1505661	1	0.944
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1701484-1701501	1	0.944
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	480749-480773	2	0.92
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	480761-480785	2	0.92
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	NZ_LS398547.1	1625764-1625788	2	0.92
NZ_LS398547_1	1.2\|222482\|25\|NZ_LS398547\|CRISPRCasFinder	222482-222506	25	NZ_LS398547.1	161231-161255	2	0.92
NZ_LS398547_1	1.2\|222482\|25\|NZ_LS398547\|CRISPRCasFinder	222482-222506	25	NZ_LS398547.1	314311-314335	2	0.92
NZ_LS398547_1	1.2\|222482\|25\|NZ_LS398547\|CRISPRCasFinder	222482-222506	25	NZ_LS398547.1	1701449-1701473	2	0.92
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	61353-61370	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	161239-161256	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	314310-314327	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	330730-330747	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	455035-455052	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	480733-480750	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	648857-648874	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	884849-884866	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	914014-914031	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1101058-1101075	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1110221-1110238	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1505692-1505709	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1701448-1701465	2	0.889
NZ_LS398547_5	5.1\|1278883\|18\|NZ_LS398547\|CRISPRCasFinder	1278883-1278900	18	NZ_LS398547.1	1780244-1780261	2	0.889

1. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to position: 455020-455046, mismatch: 0, identity: 1.0

cctttaatctcacctagctttatgcct	CRISPR spacer
cctttaatctcacctagctttatgcct	Protospacer
***************************

2. spacer 4.1|1087383|25|NZ_LS398547|CRISPRCasFinder matches to position: 884842-884866, mismatch: 0, identity: 1.0

accttcagctttgcctttaatctca	CRISPR spacer
accttcagctttgcctttaatctca	Protospacer
*************************

3. spacer 4.1|1087383|25|NZ_LS398547|CRISPRCasFinder matches to position: 914007-914031, mismatch: 0, identity: 1.0

accttcagctttgcctttaatctca	CRISPR spacer
accttcagctttgcctttaatctca	Protospacer
*************************

4. spacer 4.1|1087383|25|NZ_LS398547|CRISPRCasFinder matches to position: 1110214-1110238, mismatch: 0, identity: 1.0

accttcagctttgcctttaatctca	CRISPR spacer
accttcagctttgcctttaatctca	Protospacer
*************************

5. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 222517-222534, mismatch: 0, identity: 1.0

tgagactaaaggcatagc	CRISPR spacer
tgagactaaaggcatagc	Protospacer
******************

6. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 738685-738702, mismatch: 0, identity: 1.0

tgagactaaaggcatagc	CRISPR spacer
tgagactaaaggcatagc	Protospacer
******************

7. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 877207-877224, mismatch: 0, identity: 1.0

tgagactaaaggcatagc	CRISPR spacer
tgagactaaaggcatagc	Protospacer
******************

8. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 907912-907929, mismatch: 0, identity: 1.0

tgagactaaaggcatagc	CRISPR spacer
tgagactaaaggcatagc	Protospacer
******************

9. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1079453-1079470, mismatch: 0, identity: 1.0

tgagactaaaggcatagc	CRISPR spacer
tgagactaaaggcatagc	Protospacer
******************

10. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1625736-1625753, mismatch: 0, identity: 1.0

tgagactaaaggcatagc	CRISPR spacer
tgagactaaaggcatagc	Protospacer
******************

11. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 648909-648933, mismatch: 1, identity: 0.96

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgccttcagctctgcctttagc	Protospacer
************** **********

12. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 738662-738686, mismatch: 1, identity: 0.96

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgcctttagctatgcctttagc	Protospacer
*********.***************

13. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 877184-877208, mismatch: 1, identity: 0.96

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgcctttagctatgcctttagc	Protospacer
*********.***************

14. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 907889-907913, mismatch: 1, identity: 0.96

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgcctttagctatgcctttagc	Protospacer
*********.***************

15. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 1625752-1625776, mismatch: 1, identity: 0.96

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgccttcagctctgcctttagc	Protospacer
************** **********

16. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to position: 330715-330741, mismatch: 1, identity: 0.963

cctttaatctcacctagctttatgcct	CRISPR spacer
cctttaatctcaccgagctttatgcct	Protospacer
************** ************

17. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to position: 746038-746064, mismatch: 1, identity: 0.963

cctttaatctcacctagctttatgcct	CRISPR spacer
cctttaatctcaccgagctttatgcct	Protospacer
************** ************

18. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to position: 884855-884881, mismatch: 1, identity: 0.963

cctttaatctcacctagctttatgcct	CRISPR spacer
cctttaatctcacctagctttatacct	Protospacer
***********************.***

19. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to position: 914020-914046, mismatch: 1, identity: 0.963

cctttaatctcacctagctttatgcct	CRISPR spacer
cctttaatctcaccgagctttatgcct	Protospacer
************** ************

20. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to position: 1110227-1110253, mismatch: 1, identity: 0.963

cctttaatctcacctagctttatgcct	CRISPR spacer
cctttaatctcacctagctttatacct	Protospacer
***********************.***

21. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to position: 1449519-1449545, mismatch: 1, identity: 0.963

cctttaatctcacctagctttatgcct	CRISPR spacer
cctttaatctcaccgagctttatgcct	Protospacer
************** ************

22. spacer 4.1|1087383|25|NZ_LS398547|CRISPRCasFinder matches to position: 746025-746049, mismatch: 1, identity: 0.96

accttcagctttgcctttaatctca	CRISPR spacer
accttcagctttacctttaatctca	Protospacer
************.************

23. spacer 4.1|1087383|25|NZ_LS398547|CRISPRCasFinder matches to position: 1449506-1449530, mismatch: 1, identity: 0.96

accttcagctttgcctttaatctca	CRISPR spacer
accttcagctttacctttaatctca	Protospacer
************.************

24. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 161203-161220, mismatch: 1, identity: 0.944

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcatagc	Protospacer
***.**************

25. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 314346-314363, mismatch: 1, identity: 0.944

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcatagc	Protospacer
***.**************

26. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 648893-648910, mismatch: 1, identity: 0.944

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcatagc	Protospacer
*****.************

27. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1101106-1101123, mismatch: 1, identity: 0.944

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcatagc	Protospacer
***.**************

28. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1505644-1505661, mismatch: 1, identity: 0.944

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcatagc	Protospacer
***.**************

29. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1701484-1701501, mismatch: 1, identity: 0.944

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcatagc	Protospacer
***.**************

30. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 480749-480773, mismatch: 2, identity: 0.92

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgccttcagctttgccttcagc	Protospacer
************** ******.***

31. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 480761-480785, mismatch: 2, identity: 0.92

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgccttcagctctgccttcagc	Protospacer
************** ******.***

32. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to position: 1625764-1625788, mismatch: 2, identity: 0.92

ctctgccttcagctatgcctttagc	CRISPR spacer
ctctgccttcagctctgccttcagc	Protospacer
************** ******.***

33. spacer 1.2|222482|25|NZ_LS398547|CRISPRCasFinder matches to position: 161231-161255, mismatch: 2, identity: 0.92

ctatgcctttagtctcaccaatctt	CRISPR spacer
ctctgcctttaatctcaccaatctt	Protospacer
** ********.*************

34. spacer 1.2|222482|25|NZ_LS398547|CRISPRCasFinder matches to position: 314311-314335, mismatch: 2, identity: 0.92

ctatgcctttagtctcaccaatctt	CRISPR spacer
ctctgcctttaatctcaccaatctt	Protospacer
** ********.*************

35. spacer 1.2|222482|25|NZ_LS398547|CRISPRCasFinder matches to position: 1701449-1701473, mismatch: 2, identity: 0.92

ctatgcctttagtctcaccaatctt	CRISPR spacer
ctctgcctttaatctcaccaatctt	Protospacer
** ********.*************

36. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 61353-61370, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcagagc	Protospacer
***.********** ***

37. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 161239-161256, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcagagc	Protospacer
*****.******** ***

38. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 314310-314327, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcagagc	Protospacer
*****.******** ***

39. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 330730-330747, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcaaagc	Protospacer
*****.******** ***

40. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 455035-455052, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcaaagc	Protospacer
*****.******** ***

41. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 480733-480750, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagactaagggcaaagc	Protospacer
*********.**** ***

42. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 648857-648874, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcagagc	Protospacer
***.********** ***

43. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 884849-884866, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcaaagc	Protospacer
*****.******** ***

44. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 914014-914031, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcaaagc	Protospacer
*****.******** ***

45. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1101058-1101075, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcagagc	Protospacer
*****.******** ***

46. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1110221-1110238, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcaaagc	Protospacer
*****.******** ***

47. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1505692-1505709, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcagagc	Protospacer
*****.******** ***

48. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1701448-1701465, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgagattaaaggcagagc	Protospacer
*****.******** ***

49. spacer 5.1|1278883|18|NZ_LS398547|CRISPRCasFinder matches to position: 1780244-1780261, mismatch: 2, identity: 0.889

tgagactaaaggcatagc	CRISPR spacer
tgaaactaaaggcagagc	Protospacer
***.********** ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS398547_1	1.1\|222434\|25\|NZ_LS398547\|CRISPRCasFinder	222434-222458	25	MN693058	Marine virus AFVG_25M517, complete genome	17499-17523	3	0.88
NZ_LS398547_3	3.1\|745978\|27\|NZ_LS398547\|CRISPRCasFinder	745978-746004	27	MN693025	Marine virus AFVG_117M63, complete genome	25214-25240	6	0.778

1. spacer 1.1|222434|25|NZ_LS398547|CRISPRCasFinder matches to MN693058 (Marine virus AFVG_25M517, complete genome) position: , mismatch: 3, identity: 0.88

ctctgccttcagctatgcctttagc	CRISPR spacer
gcttgccttcagctatgcctttagc	Protospacer
 ..**********************

2. spacer 3.1|745978|27|NZ_LS398547|CRISPRCasFinder matches to MN693025 (Marine virus AFVG_117M63, complete genome) position: , mismatch: 6, identity: 0.778

cctttaatctcacctagctttatgcct	CRISPR spacer
tgcttgatcccacctagctttatgccc	Protospacer
. .**.***.****************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13358 : 88446

Bodo_saltans_virus(31.58%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109489709.1\|13358_14226_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
WP_045918250.1\|14922_15258_+	hypothetical protein	NA	NA	NA	NA
WP_109489710.1\|16819_17107_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_045918254.1\|17192_17450_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_045918257.1\|17446_18112_-	hypothetical protein	NA	NA	NA	NA
WP_045918258.1\|18131_18971_-	hypothetical protein	A0A1V0SE83	Indivirus	1.1e-10	30.2
WP_109489712.1\|21704_22572_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.4e-21	29.4
WP_045919643.1\|22825_23776_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	5.9e-85	64.5
WP_109489713.1\|24250_25135_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.0e-19	29.4
WP_045916314.1\|25885_26878_-	ribonucleotide-diphosphate reductase subunit beta	M1I8A4	Pelagibacter_phage	2.2e-98	53.5
WP_109489714.1\|26900_28718_-	ribonucleoside-diphosphate reductase subunit alpha	A0A0K1LMZ5	Caulobacter_phage	3.5e-187	54.4
WP_109489715.1\|29766_30342_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9LAT2	Tupanvirus	6.7e-07	30.4
WP_109489716.1\|30931_31799_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.1e-20	29.4
WP_109489717.1\|33754_35503_-	hypothetical protein	NA	NA	NA	NA
WP_045919503.1\|36195_37293_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_162562846.1\|40643_40793_+	hypothetical protein	NA	NA	NA	NA
WP_162562847.1\|41041_41305_+	hypothetical protein	NA	NA	NA	NA
WP_109489718.1\|41823_42691_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.2e-20	28.8
WP_045918854.1\|42997_43333_+	hypothetical protein	NA	NA	NA	NA
WP_045918855.1\|43332_43884_+	conjugal transfer protein	NA	NA	NA	NA
WP_045917268.1\|43880_44357_+	hypothetical protein	NA	NA	NA	NA
WP_081420566.1\|44774_45110_+	hypothetical protein	NA	NA	NA	NA
WP_109489719.1\|45148_46471_+	TraB/VirB10 family protein	NA	NA	NA	NA
WP_045915079.1\|46470_46800_+	hypothetical protein	NA	NA	NA	NA
WP_109489720.1\|46780_48577_+	TraC family protein	NA	NA	NA	NA
WP_045912963.1\|48484_49471_-	ankyrin repeat domain-containing protein	Q70HB9	Fowlpox_virus	4.8e-13	28.3
WP_045918698.1\|50007_50391_+	conjugal transfer protein	NA	NA	NA	NA
WP_045918697.1\|50387_52079_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_045918696.1\|52238_53558_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045918695.1\|53752_54469_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109489724.1\|55768_58405_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_109489725.1\|58427_59573_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045919366.1\|61204_61642_-\|transposase	transposase	NA	NA	NA	NA
WP_109489726.1\|61852_62821_+\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_045918909.1\|63127_64735_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109489727.1\|64724_65264_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109490408.1\|65315_66419_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109490409.1\|68252_71063_-	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	4.1e-09	25.1
WP_109489728.1\|71358_71814_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109489729.1\|71883_72894_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.8e-85	64.5
WP_109489730.1\|73012_73591_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	5.1e-07	31.4
WP_162562850.1\|75422_75563_-	hypothetical protein	NA	NA	NA	NA
WP_109489732.1\|76382_76931_-	hypothetical protein	NA	NA	NA	NA
WP_045918807.1\|77556_78369_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	1.4e-29	33.5
WP_109489733.1\|78372_78876_-	hypothetical protein	NA	NA	NA	NA
WP_109489734.1\|78921_79566_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	7.5e-15	32.8
WP_109489735.1\|79600_80176_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9LAT2	Tupanvirus	5.7e-06	30.4
WP_109489736.1\|80406_82113_-	hypothetical protein	NA	NA	NA	NA
WP_045918404.1\|83234_84029_-	hypothetical protein	NA	NA	NA	NA
WP_109489737.1\|87579_88446_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.4e-21	29.1

DBSCAN-SWA_2

96553 : 172958

Bodo_saltans_virus(29.41%)

transposase,tRNA,terminase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109489742.1\|96553_97421_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.1e-20	28.8
WP_012461709.1\|100165_100489_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_012461710.1\|100526_101207_-	DNA repair protein RadC	NA	NA	NA	NA
WP_109489743.1\|101454_101826_+	30S ribosomal protein S12	NA	NA	NA	NA
WP_109489744.1\|101849_102371_+	30S ribosomal protein S7	NA	NA	NA	NA
WP_109489745.1\|102374_104501_+	elongation factor G	A0A1S5SF82	Streptococcus_phage	1.9e-59	27.7
WP_109489746.1\|104761_106237_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_109489747.1\|107607_108474_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.2e-21	29.4
WP_011945048.1\|111064_111286_-	cold-shock protein	NA	NA	NA	NA
WP_109489748.1\|113021_113888_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_109489749.1\|114589_116446_+	hypothetical protein	NA	NA	NA	NA
WP_045916981.1\|116682_117054_+	HIT domain-containing protein	NA	NA	NA	NA
WP_109489750.1\|117113_118151_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_109489751.1\|118290_119229_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_109489752.1\|119240_120827_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	2.1e-10	41.2
WP_109489753.1\|121019_122441_-\|terminase	phage terminase large subunit	A0A088FB00	Idiomarinaceae_phage	7.8e-57	33.8
WP_012461724.1\|122770_123394_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_109489754.1\|123393_123954_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_109489755.1\|123963_125064_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_155379015.1\|125111_125252_-	hypothetical protein	NA	NA	NA	NA
WP_045917935.1\|125955_126750_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_109227687.1\|127917_128229_+	hypothetical protein	NA	NA	NA	NA
WP_109227266.1\|128441_129312_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.1e-20	33.8
WP_162562848.1\|129374_129548_-	hypothetical protein	NA	NA	NA	NA
WP_109489756.1\|130480_131029_-	cytochrome c family protein	NA	NA	NA	NA
WP_109489757.1\|131277_132237_+	paraslipin	S4VT23	Pandoravirus	2.8e-10	26.4
WP_109489758.1\|132617_133504_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.4e-19	29.8
WP_045919379.1\|137320_138346_-	P-loop NTPase	NA	NA	NA	NA
WP_045919380.1\|138524_139580_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_045914761.1\|139603_140470_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_109489759.1\|140487_141888_+\|protease	DegP-like serine protease TSA47	W5SAB9	Pithovirus	1.2e-06	31.1
WP_109227262.1\|142103_142718_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_109489760.1\|142984_145768_-	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	1.4e-97	28.9
WP_109489761.1\|145966_146983_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	2.5e-17	26.7
WP_045912337.1\|146979_147885_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	8.8e-30	38.7
WP_109489763.1\|149204_151571_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	6.2e-91	33.7
WP_109489764.1\|151663_152620_-	malate dehydrogenase	NA	NA	NA	NA
WP_109227256.1\|152839_153334_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_109227255.1\|153503_156035_+	AsmA-like C-terminal region-containing protein	NA	NA	NA	NA
WP_109489765.1\|156248_157172_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.7e-09	27.8
WP_109489766.1\|157168_157714_-	peptide deformylase	E3SLL2	Synechococcus_phage	9.1e-22	43.2
WP_109490411.1\|159274_160369_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109489767.1\|160420_161392_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_045918575.1\|162665_162989_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109489768.1\|163018_163885_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.5e-21	29.1
WP_109490412.1\|164265_164958_-	TraU family protein	NA	NA	NA	NA
WP_109489769.1\|165002_165164_-	TraU family protein	NA	NA	NA	NA
WP_012461928.1\|165857_166481_-	30S ribosomal protein S4	NA	NA	NA	NA
WP_109489770.1\|166607_167399_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_162562893.1\|167514_168303_+	ABC transporter permease	NA	NA	NA	NA
WP_012461925.1\|168331_169087_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.6e-21	34.0
WP_109489772.1\|170049_171306_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045918630.1\|171324_172491_+	hypothetical protein	NA	NA	NA	NA
WP_109489773.1\|172598_172958_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

250623 : 412370

108

Tupanvirus(16.13%)

transposase,tRNA,holin,integrase

attL 386845:386869|attR 418641:418665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109489807.1\|250623_253188_+\|tRNA	valine--tRNA ligase	A0A2K9L2Y7	Tupanvirus	4.7e-246	50.7
WP_109489808.1\|253177_256882_+	DNA polymerase III subunit alpha	A0A0K1Y9G6	Streptomyces_phage	6.4e-127	30.5
WP_109489809.1\|257200_259006_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.8e-42	28.7
WP_045912518.1\|259181_259877_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.0e-17	43.0
WP_045912517.1\|259879_260530_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_011944369.1\|260537_260837_+	septum formation initiator family protein	NA	NA	NA	NA
WP_109489810.1\|260843_261476_+	ribonuclease D	K7XYU9	uncultured_Mediterranean_phage	3.1e-13	33.2
WP_045919348.1\|262083_262680_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_045919349.1\|262808_263564_+	ribonuclease PH	NA	NA	NA	NA
WP_109489811.1\|263882_264750_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
WP_174182868.1\|265267_266053_-	cytochrome c1	NA	NA	NA	NA
WP_011944364.1\|266835_266970_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_109489812.1\|266970_267510_+	ribonuclease P protein component	NA	NA	NA	NA
WP_109489813.1\|267748_270241_+	hypothetical protein	NA	NA	NA	NA
WP_109489814.1\|270989_272270_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.1e-108	54.3
WP_109234605.1\|272303_275021_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	A0A172JHV7	Bacillus_phage	7.3e-104	32.3
WP_109489815.1\|275119_275869_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_174182854.1\|275996_276602_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_012461876.1\|276635_276860_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_045914999.1\|278932_279379_+	helix-turn-helix transcriptional regulator	K4K6E9	Caulobacter_phage	2.2e-13	42.4
WP_045918434.1\|280104_281013_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_012461867.1\|281036_281306_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_045918433.1\|281553_283770_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_045918432.1\|283863_285093_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045918431.1\|285170_285866_-	DUF5394 family protein	NA	NA	NA	NA
WP_045918430.1\|286065_287322_-	MFS transporter	NA	NA	NA	NA
WP_109489817.1\|287416_287926_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_012461860.1\|287943_288150_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_045918429.1\|288320_288926_+	COQ9 family protein	NA	NA	NA	NA
WP_109489818.1\|288962_292166_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	1.4e-178	34.5
WP_045919130.1\|292309_292894_+	DUF1013 domain-containing protein	NA	NA	NA	NA
WP_045919131.1\|293115_294378_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_045919132.1\|294434_295595_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_045919133.1\|295609_296488_+	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	3.3e-21	31.5
WP_109489819.1\|296556_298233_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_109489820.1\|298409_301238_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_108839887.1\|301273_301522_-	hypothetical protein	NA	NA	NA	NA
WP_109489821.1\|301518_302004_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA
WP_109489822.1\|302049_302823_-\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA
WP_045912254.1\|302874_303567_-	phosphatidylserine decarboxylase	A0A1V0SDU9	Indivirus	5.6e-16	33.7
WP_045912255.1\|303643_304189_-	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA
WP_012461847.1\|304151_304700_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_109489823.1\|304838_306416_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_045913414.1\|307139_307433_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_109489824.1\|307438_308188_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_109490418.1\|308268_309822_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_109489825.1\|309848_310436_-	hypothetical protein	NA	NA	NA	NA
WP_109489826.1\|310527_310749_-\|transposase	transposase	NA	NA	NA	NA
WP_109489827.1\|310941_311985_-	hypothetical protein	NA	NA	NA	NA
WP_109489828.1\|313012_313880_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.6e-20	29.4
WP_045918082.1\|314173_315145_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109489829.1\|315195_316290_-	toprim domain-containing protein	NA	NA	NA	NA
WP_045919106.1\|319695_320151_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109489830.1\|320220_321255_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	8.4e-85	64.5
WP_109489831.1\|321376_321964_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	5.8e-06	29.4
WP_109489832.1\|322052_322920_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
WP_162562855.1\|323852_324596_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109489835.1\|324822_325452_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	3.6e-14	33.3
WP_109490420.1\|327255_328875_-	RNA-binding protein	NA	NA	NA	NA
WP_109489836.1\|329869_330916_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	8.5e-85	64.5
WP_109489837.1\|330983_331439_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109490421.1\|331734_334536_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	1.6e-05	24.2
WP_045919435.1\|334672_335371_+	hypothetical protein	NA	NA	NA	NA
WP_174182869.1\|336179_337220_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109489838.1\|337235_338204_-\|transposase	transposase	A0A1S7J231	Thermus_phage	1.7e-23	29.5
WP_174182870.1\|338879_339182_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_162562856.1\|339631_339793_-	hypothetical protein	NA	NA	NA	NA
WP_045919417.1\|339817_340066_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109489840.1\|344077_344341_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045918538.1\|344669_344927_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109489841.1\|347141_347753_-	major outer membrane protein TSA22	NA	NA	NA	NA
WP_109489842.1\|347928_348732_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_109489843.1\|348823_350251_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	8.2e-38	28.5
WP_109489844.1\|350583_351945_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_012462009.1\|352121_353045_+	AEC family transporter	NA	NA	NA	NA
WP_045918542.1\|353174_354137_+	thioredoxin-disulfide reductase	A0A2K9L162	Tupanvirus	1.5e-56	41.1
WP_174182855.1\|354157_355675_-	deoxyribodipyrimidine photo-lyase	A0A2H4UV63	Bodo_saltans_virus	1.5e-50	29.6
WP_045919370.1\|357918_358422_-	hypothetical protein	NA	NA	NA	NA
WP_109489845.1\|358524_358827_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109489846.1\|359395_360628_-	hypothetical protein	NA	NA	NA	NA
WP_109489847.1\|361522_361915_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109489848.1\|362498_362675_-	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	4.5e-07	50.9
WP_045918138.1\|364489_365278_-	metal ABC transporter permease	NA	NA	NA	NA
WP_109489849.1\|365258_365972_-	metal ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.5e-16	29.0
WP_012462161.1\|366242_366803_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_109489850.1\|366814_368494_-	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	8.4e-42	39.1
WP_109489851.1\|369550_372169_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_109489852.1\|372260_373736_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_109489853.1\|373794_375165_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	2.0e-41	33.2
WP_045913578.1\|375385_376135_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_109489854.1\|376238_376907_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_109489855.1\|377045_377375_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_012462169.1\|377412_377682_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_109489856.1\|377999_378867_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	29.1
WP_012462182.1\|379707_380256_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_045919193.1\|380695_381211_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_045919192.1\|381542_381947_-	hypothetical protein	NA	NA	NA	NA
WP_109490423.1\|382957_383713_-\|integrase	site-specific integrase	B6SD77	Bacteriophage	4.2e-17	32.9
386845:386869	attL	NA	NA	NA	NA
WP_109489858.1\|391200_393453_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_109489859.1\|393960_397614_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_108839859.1\|397997_398078_-	hypothetical protein	NA	NA	NA	NA
WP_045918333.1\|398446_399688_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.2e-66	35.3
WP_045918334.1\|400603_400837_+	hypothetical protein	NA	NA	NA	NA
WP_109489860.1\|403504_404422_-	S49 family peptidase	E5AFY0	Erwinia_phage	4.3e-16	31.1
WP_045919065.1\|404713_406063_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_045919068.1\|406236_407073_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_045913658.1\|407213_407555_+	DUF2610 domain-containing protein	NA	NA	NA	NA
WP_109489861.1\|411446_412370_-\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
418641:418665	attR	NA	NA	NA	NA

DBSCAN-SWA_4

419975 : 509672

Bodo_saltans_virus(38.89%)

transposase,tRNA,integrase

attL 477254:477313|attR 507156:507293

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045918276.1\|419975_421769_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_109489864.1\|422036_426227_-	DNA-directed RNA polymerase subunit beta'	A0A0N9QZ01	Chrysochromulina_ericina_virus	2.0e-52	25.5
WP_109489865.1\|426341_430466_-	DNA-directed RNA polymerase subunit beta	F2Y248	Organic_Lake_phycodnavirus	2.3e-24	20.2
WP_080946207.1\|430781_431171_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_012462212.1\|431192_431702_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_064591919.1\|431705_432455_-	50S ribosomal protein L1	NA	NA	NA	NA
WP_012462214.1\|432458_432905_-	50S ribosomal protein L11	NA	NA	NA	NA
WP_041621696.1\|432944_433499_-	transcription termination/antitermination factor NusG	NA	NA	NA	NA
WP_012462216.1\|433522_433723_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_047220489.1\|433978_435163_-	elongation factor Tu	A0A1V0SGC3	Hokovirus	7.7e-34	28.2
WP_012462218.1\|435334_436099_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_109489866.1\|436225_436837_-	recombination protein RecR	NA	NA	NA	NA
WP_012462220.1\|436925_437462_-	septation protein A	NA	NA	NA	NA
WP_012462221.1\|437465_438305_-	FTR1 family protein	NA	NA	NA	NA
WP_012462222.1\|438333_438699_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_045918282.1\|439164_440397_-	EAL domain-containing protein	NA	NA	NA	NA
WP_045918283.1\|440585_441317_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.7e-28	40.6
WP_109489867.1\|441309_441936_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_109489868.1\|442914_443781_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.6e-20	28.8
WP_109489869.1\|447886_448754_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.5e-21	29.1
WP_109489870.1\|449717_450284_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	6.1e-13	31.9
WP_045918833.1\|450386_450890_+	hypothetical protein	NA	NA	NA	NA
WP_045913603.1\|450893_451703_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	5.3e-18	26.0
WP_045918836.1\|453561_454140_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.1e-08	31.0
WP_045918837.1\|454258_455269_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.8e-85	64.9
WP_109489872.1\|455336_455600_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109489873.1\|455849_456302_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109489874.1\|456325_456697_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109490424.1\|457467_457764_+	hypothetical protein	NA	NA	NA	NA
WP_045918987.1\|457822_458278_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045918995.1\|460451_461168_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_045918992.1\|461179_461740_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	2.4e-25	41.1
WP_109489875.1\|461850_463155_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045918644.1\|468166_469423_-	hypothetical protein	NA	NA	NA	NA
WP_045918645.1\|469949_470525_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_109489876.1\|471805_472840_+	ankyrin repeat domain-containing protein	A0A068EGQ7	Pigeonpox_virus	1.1e-07	28.6
WP_012460767.1\|475663_476113_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_109489877.1\|476449_477317_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	29.4
477254:477313	attL	NA	NA	NA	NA
WP_174182871.1\|478780_479875_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109489878.1\|479926_480910_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109489725.1\|482541_483687_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109489879.1\|484859_485727_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	29.1
WP_045919300.1\|487513_487915_-	hypothetical protein	NA	NA	NA	NA
WP_162562857.1\|488007_489171_-	hypothetical protein	NA	NA	NA	NA
WP_109489877.1\|491338_492206_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	29.4
WP_012461740.1\|493436_493643_+\|integrase	integrase	NA	NA	NA	NA
WP_109489881.1\|493731_494067_+	hypothetical protein	NA	NA	NA	NA
WP_045918812.1\|495053_499580_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_158296923.1\|500697_500835_-	hypothetical protein	NA	NA	NA	NA
WP_109489882.1\|503682_504018_-	hypothetical protein	NA	NA	NA	NA
WP_109490426.1\|504070_504739_-\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	4.7e-12	27.1
WP_109489883.1\|505244_506112_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.1e-21	29.1
WP_162562858.1\|506144_506291_+	hypothetical protein	NA	NA	NA	NA
WP_109489884.1\|508805_509672_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
507156:507293	attR	NA	NA	NA	NA

DBSCAN-SWA_5

540599 : 761852

155

Bodo_saltans_virus(37.21%)

transposase,tRNA,integrase,protease

attL 539562:539621|attR 760863:760890

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
539562:539621	attL	NA	NA	NA	NA
WP_109489893.1\|540599_541466_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	29.1
539562:539621	attL	NA	NA	NA	NA
WP_174182856.1\|543158_544478_+\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	6.9e-15	25.1
539562:539621	attL	NA	NA	NA	NA
WP_045916792.1\|544533_544869_+	hypothetical protein	NA	NA	NA	NA
WP_045918733.1\|544868_545183_+	hypothetical protein	NA	NA	NA	NA
WP_045919476.1\|545416_545893_+	hypothetical protein	NA	NA	NA	NA
WP_174182873.1\|546137_546320_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_045919475.1\|546319_546649_+	hypothetical protein	NA	NA	NA	NA
WP_109489894.1\|547323_548190_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	7.2e-21	28.4
WP_109489895.1\|549172_549649_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_174182874.1\|549823_550408_+\|integrase	tyrosine-type recombinase/integrase	B6SD77	Bacteriophage	9.8e-14	35.9
WP_045918504.1\|550869_551187_+	hypothetical protein	NA	NA	NA	NA
WP_045919156.1\|551398_551728_+	hypothetical protein	NA	NA	NA	NA
WP_045919157.1\|552980_553970_-	ankyrin repeat domain-containing protein	A0A1V0QGP6	Shearwaterpox_virus	1.1e-09	28.0
WP_011944475.1\|557930_558056_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_109489896.1\|558414_559281_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
558343:558896	attR	NA	NA	NA	NA
WP_109489898.1\|560077_560404_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.5e-16	47.7
558343:558896	attR	NA	NA	NA	NA
WP_109489899.1\|560426_562745_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
558343:558896	attR	NA	NA	NA	NA
WP_064591171.1\|562757_563819_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_109489900.1\|563928_565278_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_109489901.1\|565337_566159_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_109489902.1\|566277_567153_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_045913142.1\|567335_567644_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_109489903.1\|568179_569076_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_109489904.1\|569072_570281_-\|tRNA	CCA tRNA nucleotidyltransferase	K4JS34	Caulobacter_phage	6.1e-34	31.2
WP_109490428.1\|570333_571533_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_109489905.1\|571708_575176_-	UvrD-helicase domain-containing protein	G3MA40	Bacillus_virus	5.3e-06	28.1
WP_109489906.1\|575188_575680_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_109489907.1\|575743_576595_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_109489908.1\|576599_577403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_109489909.1\|577828_578356_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_045919263.1\|579361_579568_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_045919264.1\|579664_580030_+	membrane protein	NA	NA	NA	NA
WP_045919265.1\|580409_581330_-	GTPase Era	NA	NA	NA	NA
WP_045919266.1\|581326_582349_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_045918130.1\|582553_583633_-	peptide chain release factor 1	NA	NA	NA	NA
WP_109489910.1\|584397_585264_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.7e-20	28.3
WP_109489911.1\|586263_591183_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_109489912.1\|591264_592608_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_109489913.1\|592633_593572_+	tyrosine recombinase XerC	A0A0K0N6I5	Gordonia_phage	2.5e-11	34.9
WP_045912215.1\|593606_594038_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_012462271.1\|594127_594655_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.6e-39	49.7
WP_109489914.1\|594678_595551_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_109489915.1\|595534_596473_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_162562860.1\|596893_597187_+\|transposase	transposase	NA	NA	NA	NA
WP_045919011.1\|597466_600055_-	hypothetical protein	NA	NA	NA	NA
WP_045919012.1\|600660_600942_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109489917.1\|600938_601298_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_162562861.1\|602482_602641_+	hypothetical protein	NA	NA	NA	NA
WP_109489919.1\|602874_603741_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.1e-20	28.8
WP_109489920.1\|605207_606075_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.0e-19	28.8
WP_109489921.1\|607265_607967_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_109489922.1\|607985_608771_-	extragenic suppressor protein SuhB	NA	NA	NA	NA
WP_109489923.1\|608767_609337_-	elongation factor P	NA	NA	NA	NA
WP_012460731.1\|609542_610796_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.0e-120	53.6
WP_012460730.1\|611023_612325_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_012460729.1\|612338_612632_-	hypothetical protein	NA	NA	NA	NA
WP_045913361.1\|612645_613866_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_109489924.1\|613946_614963_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_109489925.1\|615237_617691_+	virB4 protein precursor	NA	NA	NA	NA
WP_109489926.1\|617690_622208_+	hypothetical protein	NA	NA	NA	NA
WP_109489927.1\|623087_623954_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.2e-20	28.8
WP_109489928.1\|627542_629279_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.3e-40	25.8
WP_109489929.1\|629262_629595_-	iron donor protein CyaY	NA	NA	NA	NA
WP_109489930.1\|630510_634635_+	hypothetical protein	NA	NA	NA	NA
WP_109489931.1\|637252_637636_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_045918884.1\|637666_638056_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_045918885.1\|638247_640038_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_045918888.1\|640072_640858_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_109489933.1\|641590_642457_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.0
WP_174182849.1\|643508_644219_+	AAA family ATPase	NA	NA	NA	NA
WP_174182850.1\|644275_645058_+	conjugal transfer protein TraA	NA	NA	NA	NA
WP_109489934.1\|645086_646742_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109489935.1\|646928_648023_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109489936.1\|648074_649082_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109489937.1\|650919_651786_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.2e-21	28.7
WP_162562862.1\|652049_652208_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_012460929.1\|653257_653593_-	hypothetical protein	NA	NA	NA	NA
WP_109489938.1\|653840_654708_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
WP_109489939.1\|656694_656844_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109489940.1\|656844_657712_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	29.1
WP_045919388.1\|657711_658377_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_045918992.1\|658388_658949_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	2.4e-25	41.1
WP_045919493.1\|659059_659956_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045919203.1\|663013_663343_-	hypothetical protein	NA	NA	NA	NA
WP_174182875.1\|663342_663525_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_109490174.1\|663621_663744_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_045919526.1\|663793_664246_-	hypothetical protein	NA	NA	NA	NA
WP_045919061.1\|664242_664794_-	conjugal transfer protein	NA	NA	NA	NA
WP_109489882.1\|664793_665129_-	hypothetical protein	NA	NA	NA	NA
WP_109490426.1\|665181_665850_-\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	4.7e-12	27.1
WP_045919057.1\|667777_669061_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109489941.1\|669713_670580_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.5e-21	29.1
WP_109489942.1\|674387_676316_-	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_109489943.1\|676361_678260_-	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_045917989.1\|678409_679330_+	DMT family transporter	NA	NA	NA	NA
WP_045916875.1\|679367_680723_-	DNA repair protein RadA	NA	NA	NA	NA
WP_045917990.1\|680722_681295_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_109489944.1\|681308_681800_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_109489945.1\|682044_682767_+	SURF1 family protein	NA	NA	NA	NA
WP_109489946.1\|682761_683247_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109489947.1\|683580_684510_-	site-specific tyrosine recombinase XerD	S5W9T9	Leptospira_phage	6.5e-20	29.3
WP_109489948.1\|684853_686227_+	TolC family protein	NA	NA	NA	NA
WP_109489949.1\|686271_686844_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_109489950.1\|686845_688675_+	hypothetical protein	NA	NA	NA	NA
WP_045918006.1\|688717_689482_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_012460802.1\|689478_689853_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_045918000.1\|689879_692072_+	ATP-dependent RecD-like DNA helicase	A0A0H3UZA5	Geobacillus_virus	3.1e-52	27.1
WP_109489951.1\|692096_692964_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.4e-21	29.1
WP_109489952.1\|693597_694053_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_047220525.1\|694141_694717_+	hypothetical protein	NA	NA	NA	NA
WP_109489953.1\|695390_696257_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.6e-20	29.4
WP_045919614.1\|696796_697735_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.3e-84	60.9
WP_045919449.1\|697856_698432_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	2.3e-07	30.2
WP_045919615.1\|698532_699390_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_045918311.1\|700924_702145_-	hypothetical protein	NA	NA	NA	NA
WP_109489954.1\|702502_703369_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.4e-21	29.1
WP_109489955.1\|704370_706143_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	4.3e-97	35.8
WP_109489956.1\|706139_708239_-	NAD-dependent DNA ligase LigA	A0A1W6DX16	Sphingobium_phage	3.4e-101	36.3
WP_174182876.1\|708307_708763_-	nucleoside deaminase	NA	NA	NA	NA
WP_045912615.1\|708809_709727_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_045919126.1\|710006_710819_+	hypothetical protein	NA	NA	NA	NA
WP_011945017.1\|711921_712470_-	NifU family protein	Q58MC7	Prochlorococcus_phage	2.7e-05	37.8
WP_045914701.1\|712528_712882_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_045919125.1\|712957_713596_+	endonuclease III	NA	NA	NA	NA
WP_109489957.1\|713592_714225_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_109489958.1\|714543_718017_+	acyl-[ACP]--phospholipid O-acyltransferase	NA	NA	NA	NA
WP_174182856.1\|721101_722421_+\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	6.9e-15	25.1
WP_045916792.1\|722476_722812_+	hypothetical protein	NA	NA	NA	NA
WP_045919142.1\|724356_724803_+	hypothetical protein	NA	NA	NA	NA
WP_109489959.1\|725304_725631_+	hypothetical protein	NA	NA	NA	NA
WP_109489960.1\|725670_727005_+	TraB/VirB10 family protein	NA	NA	NA	NA
WP_045918856.1\|727004_727334_+	hypothetical protein	NA	NA	NA	NA
WP_045919231.1\|729210_729417_+	hypothetical protein	NA	NA	NA	NA
WP_174182857.1\|729417_730395_+	TraU family protein	NA	NA	NA	NA
WP_109489961.1\|730417_730807_+	conjugal transfer protein	NA	NA	NA	NA
WP_109489962.1\|730803_731904_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_041621750.1\|731861_732497_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109489963.1\|735730_736762_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109489965.1\|738536_738974_-\|transposase	transposase	NA	NA	NA	NA
WP_109489726.1\|739184_740153_+\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_109489966.1\|740168_740729_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109489967.1\|740780_741875_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109489968.1\|745315_745771_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109489969.1\|745838_746825_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.0e-84	64.5
WP_109489970.1\|746943_747534_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1X9SH80	Bradyrhizobium_phage	2.6e-06	38.8
WP_109489971.1\|747575_748070_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_045919443.1\|749912_750176_-	hypothetical protein	NA	NA	NA	NA
WP_045919371.1\|750543_751353_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	5.3e-18	26.0
WP_045919370.1\|751356_751860_-	hypothetical protein	NA	NA	NA	NA
WP_109489972.1\|751962_752529_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	6.1e-13	31.3
WP_045919512.1\|752826_754275_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.7e-71	36.5
WP_045918669.1\|754283_755999_-	hypothetical protein	NA	NA	NA	NA
WP_045918667.1\|757974_758355_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.9e-08	33.0
WP_109489973.1\|758351_759914_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_109489974.1\|760985_761852_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.2e-21	29.1

DBSCAN-SWA_6

799489 : 867354

Bodo_saltans_virus(23.08%)

transposase,tRNA,integrase

attL 845788:845809|attR 865086:865107

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109489988.1\|799489_800357_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	29.4
WP_045918108.1\|800670_801423_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_109489989.1\|801434_803207_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_012461557.1\|803371_803716_+	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	3.4e-14	34.3
WP_109489990.1\|803724_805149_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_109489991.1\|805347_808014_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	1.4e-70	37.9
WP_045918111.1\|808146_809760_+	hypothetical protein	NA	NA	NA	NA
WP_109489992.1\|809761_810415_+	hypothetical protein	NA	NA	NA	NA
WP_109489993.1\|810404_811295_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_045912384.1\|811309_812848_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_109489994.1\|812891_813437_-	ATP synthase F1 subunit delta	NA	NA	NA	NA
WP_045912386.1\|813531_813978_-	dUTP diphosphatase	A0A2R8FFV2	Cedratvirus	2.6e-35	55.5
WP_109489995.1\|814144_814648_-	translation initiation factor IF-3	A0A2C9CXP5	Yersinia_phage	4.2e-05	26.7
WP_109489996.1\|814690_816643_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.2e-119	38.0
WP_109489997.1\|816894_818235_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_109489998.1\|818337_819369_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_109489999.1\|819617_822257_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_109490000.1\|822749_824981_-	AAA family ATPase	A0A2R8FE73	Brazilian_cedratvirus	4.6e-11	25.7
WP_011944565.1\|826385_826871_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_045918118.1\|827990_828203_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109490001.1\|831123_831990_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.9e-22	29.4
WP_109490432.1\|832794_833931_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_109490433.1\|833951_834764_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_109490002.1\|834774_835749_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_109490003.1\|835726_836638_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_162562866.1\|836606_838079_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_045918268.1\|838282_839020_-	type-specific antigen TSA56	NA	NA	NA	NA
WP_045918267.1\|839247_840849_-	type-specific antigen TSA56	NA	NA	NA	NA
WP_109490005.1\|841394_842273_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_109490006.1\|842265_844317_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_109490007.1\|844294_845263_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	2.1e-37	33.8
845788:845809	attL	NA	NA	NA	NA
WP_109490008.1\|847615_847789_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109490009.1\|848976_849654_+	DUF2659 family protein	NA	NA	NA	NA
WP_109490010.1\|849713_851066_+	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA
WP_109490011.1\|851984_852851_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.5e-21	29.1
WP_045919236.1\|853696_854836_+\|integrase	site-specific integrase	A0A0U4JNS1	Bacillus_phage	3.4e-18	27.0
WP_045919235.1\|854838_855309_+	peroxiredoxin	NA	NA	NA	NA
WP_045913241.1\|855376_855712_+	hypothetical protein	NA	NA	NA	NA
WP_045919234.1\|855711_856290_+	conjugal transfer protein	NA	NA	NA	NA
WP_109489959.1\|856395_856722_+	hypothetical protein	NA	NA	NA	NA
WP_109489960.1\|856761_858096_+	TraB/VirB10 family protein	NA	NA	NA	NA
WP_045918856.1\|858095_858425_+	hypothetical protein	NA	NA	NA	NA
WP_109490012.1\|858405_860898_+	TraC family protein	NA	NA	NA	NA
WP_109490013.1\|860894_861554_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_045919231.1\|861637_861844_+	hypothetical protein	NA	NA	NA	NA
WP_174182853.1\|861844_862822_+	TraU family protein	NA	NA	NA	NA
WP_109489789.1\|862908_863229_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_109489726.1\|864037_865006_-\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_109489726.1\|866385_867354_+\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
865086:865107	attR	NA	NA	NA	NA

DBSCAN-SWA_7

877058 : 945054

Streptococcus_phage(15.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109490018.1\|877058_877496_-\|transposase	transposase	NA	NA	NA	NA
WP_109489726.1\|877706_878675_+\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_109490019.1\|878690_879251_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109490434.1\|879302_880397_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109490020.1\|881085_881955_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109490021.1\|884198_884612_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109490022.1\|884679_885642_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.0e-84	64.5
WP_109490023.1\|885760_886339_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	2.3e-07	30.2
WP_109490024.1\|886439_887297_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109490025.1\|887318_888047_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109490026.1\|888401_889118_-	hypothetical protein	NA	NA	NA	NA
WP_109490027.1\|889644_890457_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	3.0e-29	33.5
WP_109490435.1\|890460_891009_-	hypothetical protein	NA	NA	NA	NA
WP_109490028.1\|891055_891700_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	1.3e-14	32.8
WP_045913638.1\|891737_892313_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	4.6e-08	29.2
WP_109490029.1\|892542_894249_-	hypothetical protein	NA	NA	NA	NA
WP_045918803.1\|896744_897074_-	hypothetical protein	NA	NA	NA	NA
WP_174182859.1\|897073_897625_-	TraB/VirB10 family protein	NA	NA	NA	NA
WP_174182860.1\|899245_899419_+	hypothetical protein	NA	NA	NA	NA
WP_174182861.1\|899419_900397_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_045919229.1\|900419_900803_+	conjugal transfer protein	NA	NA	NA	NA
WP_109490031.1\|900799_902491_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109490032.1\|902487_903186_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109490033.1\|903182_904484_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_109490034.1\|907763_908711_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109489967.1\|908762_909857_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109490035.1\|913297_913753_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109490036.1\|913820_914819_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	4.3e-86	65.7
WP_045918906.1\|914937_915516_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9LAT2	Tupanvirus	1.3e-05	29.6
WP_045919371.1\|917375_918185_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	5.3e-18	26.0
WP_109490038.1\|918188_918692_-	hypothetical protein	NA	NA	NA	NA
WP_109489972.1\|918794_919361_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	6.1e-13	31.3
WP_045919512.1\|919658_921107_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.7e-71	36.5
WP_045912460.1\|924038_924563_+	hypothetical protein	NA	NA	NA	NA
WP_011944708.1\|924992_925151_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_109490437.1\|925669_926659_-	GTPase ObgE	NA	NA	NA	NA
WP_109490039.1\|926678_927056_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_109490040.1\|927079_927409_-	hypothetical protein	NA	NA	NA	NA
WP_045914482.1\|927580_928321_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_109490041.1\|928653_929052_+	hypothetical protein	NA	NA	NA	NA
WP_109490042.1\|929069_931208_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.4e-09	35.6
WP_109490043.1\|931218_931614_+	holo-ACP synthase	NA	NA	NA	NA
WP_109490044.1\|931750_932618_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.0e-22	29.4
WP_012460965.1\|933711_935379_-	chaperonin GroEL	A0A219YK78	uncultured_virus	1.4e-142	53.1
WP_045914486.1\|935451_935736_-	co-chaperone GroES	A0A221S4E4	uncultured_virus	8.1e-06	29.2
WP_162562867.1\|935976_936201_-	hypothetical protein	NA	NA	NA	NA
WP_045918817.1\|936354_936585_-	reverse transcriptase N-terminal domain-containing protein	NA	NA	NA	NA
WP_045918816.1\|936670_937843_+	ankyrin repeat domain-containing protein	Q6VZB8	Canarypox_virus	1.5e-05	27.7
WP_045918815.1\|938046_938913_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	8.5e-22	29.1
WP_045918814.1\|939281_940736_-	replicative DNA helicase	A0A218KST2	Xenohaliotis_phage	1.5e-63	34.4
WP_045918829.1\|941480_942992_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	9.0e-27	34.6
WP_011944696.1\|943326_943677_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_109489988.1\|944186_945054_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	29.4

DBSCAN-SWA_8

949230 : 1024141

Bodo_saltans_virus(21.43%)

transposase,tRNA,integrase

attL 975443:975502|attR 980759:981738

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109489726.1\|949230_950199_-\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_045919500.1\|955110_955611_+	hypothetical protein	NA	NA	NA	NA
WP_109490047.1\|956644_957512_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	29.8
WP_109490048.1\|957579_958578_-	AAA family ATPase	NA	NA	NA	NA
WP_109490049.1\|958549_959857_-	MobA/MobL family protein	NA	NA	NA	NA
WP_045919401.1\|960152_960608_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045914886.1\|960649_961435_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	2.0e-17	29.5
WP_109489982.1\|961686_962554_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.5e-21	28.8
WP_045919404.1\|964256_964442_+	hypothetical protein	NA	NA	NA	NA
WP_045912900.1\|965929_966319_-	hypothetical protein	NA	NA	NA	NA
WP_109490050.1\|967707_968310_+	peroxiredoxin	NA	NA	NA	NA
WP_109490051.1\|968350_969505_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.2e-23	33.8
WP_108883745.1\|969944_970061_-	hypothetical protein	NA	NA	NA	NA
WP_109490052.1\|971191_972967_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.3e-69	36.0
WP_109490053.1\|972950_974795_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	29.7
975443:975502	attL	NA	NA	NA	NA
WP_109489895.1\|975861_976338_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_174182874.1\|976512_977097_+\|integrase	tyrosine-type recombinase/integrase	B6SD77	Bacteriophage	9.8e-14	35.9
WP_045918504.1\|977558_977876_+	hypothetical protein	NA	NA	NA	NA
WP_045919215.1\|978087_978294_+	hypothetical protein	NA	NA	NA	NA
WP_109490054.1\|978361_979228_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.6e-20	28.3
WP_174182877.1\|979253_979838_-\|integrase	tyrosine-type recombinase/integrase	B6SD77	Bacteriophage	3.6e-16	34.0
WP_109489895.1\|979922_980399_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109490055.1\|981027_984465_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.7e-09	22.6
980759:981738	attR	NA	NA	NA	NA
WP_109490056.1\|984756_984963_-\|transposase	transposase	NA	NA	NA	NA
WP_109490057.1\|985014_985296_-	hypothetical protein	NA	NA	NA	NA
WP_109234702.1\|985921_987121_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_109490058.1\|987514_989650_+	hypothetical protein	NA	NA	NA	NA
WP_109227415.1\|989894_990512_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_011944917.1\|990511_991489_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	6.2e-05	25.3
WP_045914419.1\|991670_992495_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_109490059.1\|992887_993226_-	YraN family protein	NA	NA	NA	NA
WP_109490060.1\|993292_994594_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.0e-31	26.7
WP_109490061.1\|994885_996364_-	hypothetical protein	NA	NA	NA	NA
WP_045912227.1\|996369_997647_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_109490062.1\|997646_1000538_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_109227421.1\|1000578_1001220_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	7.2e-26	30.7
WP_064591350.1\|1002432_1003701_+	DUF21 domain-containing protein	NA	NA	NA	NA
WP_109490063.1\|1003690_1005553_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_109490064.1\|1005721_1005850_-	hypothetical protein	NA	NA	NA	NA
WP_012461497.1\|1009854_1010085_-	hypothetical protein	NA	NA	NA	NA
WP_109490065.1\|1010289_1010661_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_011944977.1\|1010672_1011188_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_045918691.1\|1011198_1011789_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_045918690.1\|1011800_1012991_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_109490066.1\|1012987_1013542_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_109490067.1\|1013559_1014828_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_109490068.1\|1015124_1015838_-	hypothetical protein	NA	NA	NA	NA
WP_109490438.1\|1016135_1016417_+\|transposase	transposase	NA	NA	NA	NA
WP_109490069.1\|1016968_1018468_+	NTP/NDP exchange transporter	NA	NA	NA	NA
WP_109490070.1\|1018711_1019068_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_109490439.1\|1019130_1019499_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_045912552.1\|1019672_1020152_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_109490071.1\|1020207_1021176_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_109490072.1\|1021203_1021542_-	DUF167 domain-containing protein	NA	NA	NA	NA
WP_109490073.1\|1021694_1022435_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_109490074.1\|1022421_1023288_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_109490075.1\|1023289_1024141_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_9

1030557 : 1120788

Bodo_saltans_virus(52.63%)

transposase,tRNA,integrase

attL 1027167:1027226|attR 1113777:1113885

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1027167:1027226	attL	NA	NA	NA	NA
WP_045918580.1\|1030557_1030812_+\|transposase	transposase	NA	NA	NA	NA
WP_045918579.1\|1030924_1031125_+	hypothetical protein	NA	NA	NA	NA
WP_109490078.1\|1032167_1033034_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.2e-21	29.1
WP_045918578.1\|1033031_1033466_+	hypothetical protein	NA	NA	NA	NA
WP_045918577.1\|1034558_1034738_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109235163.1\|1035184_1035829_-	SCO family protein	NA	NA	NA	NA
WP_109490080.1\|1038016_1038883_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	8.5e-22	29.1
WP_012461396.1\|1040204_1040375_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_012461397.1\|1040383_1040707_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_109490081.1\|1041842_1042709_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.0e-22	29.4
WP_109490082.1\|1042947_1043121_-\|transposase	transposase	NA	NA	NA	NA
WP_012461400.1\|1045465_1045831_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_011944543.1\|1045850_1046057_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_045913593.1\|1046496_1048389_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.1e-89	30.9
WP_012461403.1\|1048551_1049718_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_109490083.1\|1049869_1051360_+	trigger factor	NA	NA	NA	NA
WP_109490084.1\|1051856_1053527_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.1e-45	29.4
WP_045918515.1\|1053635_1054385_-	winged helix-turn-helix domain-containing protein	W8CYM9	Bacillus_phage	1.2e-11	27.5
WP_011944537.1\|1054678_1055035_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_045918523.1\|1055109_1055391_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_045918516.1\|1055434_1055962_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_045918517.1\|1056115_1057591_+	NTP/NDP exchange transporter	NA	NA	NA	NA
WP_045918524.1\|1058997_1059468_-	peroxiredoxin	NA	NA	NA	NA
WP_045918518.1\|1059476_1059902_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_109489856.1\|1061093_1061960_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	29.1
WP_109490087.1\|1064558_1065426_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.2e-21	29.8
WP_045914191.1\|1066361_1067705_+	DUF2748 family protein	NA	NA	NA	NA
WP_109490088.1\|1067939_1069049_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_109490089.1\|1069407_1069647_+	propionyl-CoA carboxylase beta chain precursor	NA	NA	NA	NA
WP_109489737.1\|1069750_1070618_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.4e-21	29.1
WP_045918630.1\|1071706_1072873_-	hypothetical protein	NA	NA	NA	NA
WP_109489772.1\|1072891_1074148_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109490440.1\|1075418_1076105_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109490090.1\|1076101_1076800_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109490091.1\|1078099_1078591_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_109489838.1\|1080066_1081035_+\|transposase	transposase	A0A1S7J231	Thermus_phage	1.7e-23	29.5
WP_174182862.1\|1081688_1082102_-	hypothetical protein	NA	NA	NA	NA
WP_045919656.1\|1084402_1084864_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045919657.1\|1084906_1085635_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109490441.1\|1086745_1087036_+	hypothetical protein	NA	NA	NA	NA
WP_109490092.1\|1087244_1088183_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.7e-84	61.2
WP_045918906.1\|1088301_1088880_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9LAT2	Tupanvirus	1.3e-05	29.6
WP_109490093.1\|1091286_1092154_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.1e-20	28.8
WP_045919222.1\|1092914_1093733_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	1.4e-29	33.5
WP_109490094.1\|1093736_1094240_-	hypothetical protein	NA	NA	NA	NA
WP_109490095.1\|1095903_1096771_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.4e-21	29.4
WP_109490096.1\|1097994_1099140_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109490097.1\|1099145_1100900_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109490098.1\|1100909_1101905_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109490442.1\|1101956_1103051_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109490099.1\|1104883_1105681_-	toprim domain-containing protein	NA	NA	NA	NA
WP_045915368.1\|1107981_1108437_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045918904.1\|1108447_1109296_-	hypothetical protein	NA	NA	NA	NA
WP_045918905.1\|1110027_1111014_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	5.6e-86	65.7
WP_109490100.1\|1112848_1113715_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.8e-22	29.4
WP_109490101.1\|1114101_1117536_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.3e-09	22.6
1113777:1113885	attR	NA	NA	NA	NA
WP_109490102.1\|1119288_1119837_-	hypothetical protein	NA	NA	NA	NA
WP_109490103.1\|1119921_1120788_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1

DBSCAN-SWA_10

1130369 : 1200510

Bodo_saltans_virus(35.29%)

protease,integrase,head,transposase,tRNA,capsid,tail,portal

attL 1184472:1184490|attR 1203824:1203842

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109490107.1\|1130369_1131560_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	3.1e-59	37.1
WP_045918368.1\|1131578_1131845_+	hypothetical protein	NA	NA	NA	NA
WP_011945001.1\|1132243_1132483_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045918369.1\|1132661_1134224_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_162562869.1\|1134252_1134390_-	hypothetical protein	NA	NA	NA	NA
WP_109490108.1\|1134423_1135290_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.4e-21	29.1
WP_045918370.1\|1136845_1137532_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045918371.1\|1138009_1139071_+	hypothetical protein	NA	NA	NA	NA
WP_162562870.1\|1139260_1139494_-	hypothetical protein	NA	NA	NA	NA
WP_109490110.1\|1141424_1142292_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	29.1
WP_045918373.1\|1143870_1145052_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	3.1e-14	22.2
WP_109490111.1\|1147757_1148624_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.2e-22	29.4
WP_109490112.1\|1148771_1150322_-	RAP domain-containing protein	NA	NA	NA	NA
WP_162562871.1\|1150617_1150827_-	hypothetical protein	NA	NA	NA	NA
WP_109490113.1\|1151159_1152671_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_109490114.1\|1153824_1155309_+	ankyrin repeat domain-containing protein	A0A1V0S7Q4	Shearwaterpox_virus	7.0e-08	26.0
WP_109490443.1\|1155406_1155550_-	HNH endonuclease	NA	NA	NA	NA
WP_109490115.1\|1155775_1155967_+	hypothetical protein	NA	NA	NA	NA
WP_109490116.1\|1156114_1157767_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.9e-46	34.8
WP_109227499.1\|1157750_1158602_+	AAA family ATPase	NA	NA	NA	NA
WP_041621781.1\|1158942_1159803_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_109490117.1\|1159799_1160729_+	translation elongation factor Ts	NA	NA	NA	NA
WP_109490118.1\|1160815_1163257_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_109490119.1\|1163253_1164288_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.4e-31	40.7
WP_011944826.1\|1166745_1168551_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	3.3e-20	32.6
WP_109490121.1\|1168702_1169806_+	peptide chain release factor 2	NA	NA	NA	NA
WP_109490122.1\|1170126_1172616_-	hypothetical protein	NA	NA	NA	NA
WP_162562873.1\|1172945_1173122_+	hypothetical protein	NA	NA	NA	NA
WP_109490123.1\|1173328_1174342_-	porphobilinogen synthase	NA	NA	NA	NA
WP_109490124.1\|1174512_1175202_+	protein TolQ	NA	NA	NA	NA
WP_011944822.1\|1175207_1175666_+	protein TolR	NA	NA	NA	NA
WP_109490125.1\|1175652_1176882_+	hypothetical protein	NA	NA	NA	NA
WP_109490444.1\|1176973_1177765_-	NAD kinase	NA	NA	NA	NA
WP_109490126.1\|1177781_1178816_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.5e-69	44.6
WP_045913688.1\|1178839_1179349_-	CarD family transcriptional regulator	NA	NA	NA	NA
WP_064591391.1\|1179570_1180239_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.2e-37	47.5
WP_109490127.1\|1180992_1184430_+	response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	6.6e-09	35.8
1184472:1184490	attL	NA	NA	NA	NA
WP_109490001.1\|1185183_1186050_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.9e-22	29.4
WP_045919431.1\|1186047_1186965_+\|integrase	site-specific integrase	B6SD77	Bacteriophage	4.8e-15	27.3
WP_045916792.1\|1187020_1187356_+	hypothetical protein	NA	NA	NA	NA
WP_045918733.1\|1187355_1187670_+	hypothetical protein	NA	NA	NA	NA
WP_045919476.1\|1187903_1188380_+	hypothetical protein	NA	NA	NA	NA
WP_174182873.1\|1188624_1188807_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_045919475.1\|1188806_1189136_+	hypothetical protein	NA	NA	NA	NA
WP_109490128.1\|1189810_1190677_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.4e-21	28.8
WP_045919137.1\|1191817_1192513_-	hypothetical protein	NA	NA	NA	NA
WP_045919138.1\|1193345_1194611_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_109490129.1\|1194812_1196174_+	cell division protein FtsZ	NA	NA	NA	NA
WP_109490130.1\|1196257_1197229_+	hypothetical protein	NA	NA	NA	NA
WP_045918178.1\|1197906_1198461_+\|head,protease	HK97 family phage prohead protease	I6S2W2	Marinomonas_phage	3.8e-23	43.8
WP_109490131.1\|1198472_1199588_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	8.3e-54	39.9
WP_109490132.1\|1199621_1200167_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_109490133.1\|1200168_1200510_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
1203824:1203842	attR	NA	NA	NA	NA

DBSCAN-SWA_11

1213147 : 1279072

Bodo_saltans_virus(44.44%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109490139.1\|1213147_1214437_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.4e-99	48.5
WP_109490140.1\|1214438_1215296_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_109490141.1\|1215662_1217195_+	ADP/ATP carrier protein	NA	NA	NA	NA
WP_109490142.1\|1217247_1219917_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	4.6e-26	23.5
WP_109490143.1\|1220000_1220927_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	7.6e-37	37.9
WP_162562874.1\|1221060_1221267_-	hypothetical protein	NA	NA	NA	NA
WP_109490145.1\|1221263_1222131_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.9e-22	29.4
WP_162562875.1\|1222164_1222311_+	hypothetical protein	NA	NA	NA	NA
WP_109490146.1\|1223114_1223291_+\|transposase	transposase	NA	NA	NA	NA
WP_045919447.1\|1223430_1223997_+	hypothetical protein	NA	NA	NA	NA
WP_045919446.1\|1224249_1225242_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_045918632.1\|1225304_1226576_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_109490147.1\|1226866_1227734_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	8.5e-22	29.1
WP_012461495.1\|1228403_1229249_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_109489772.1\|1231427_1232684_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045918630.1\|1232702_1233869_+	hypothetical protein	NA	NA	NA	NA
WP_045919440.1\|1237279_1237714_-	CopD family protein	NA	NA	NA	NA
WP_109490148.1\|1237722_1238757_-	ferrochelatase	NA	NA	NA	NA
WP_109490149.1\|1238749_1239778_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_109490150.1\|1241239_1242745_+	transcription termination factor Rho	NA	NA	NA	NA
WP_064643676.1\|1243485_1243674_+	hypothetical protein	NA	NA	NA	NA
WP_109490151.1\|1244101_1244969_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.0e-22	29.4
WP_011944758.1\|1245831_1246071_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_045917880.1\|1246124_1246406_+	ETC complex I subunit	NA	NA	NA	NA
WP_109490152.1\|1247485_1248838_+	signal recognition particle protein	NA	NA	NA	NA
WP_045917881.1\|1248895_1249252_+	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_109490153.1\|1250009_1250882_+	hypothetical protein	NA	NA	NA	NA
WP_045913507.1\|1251095_1251761_+	guanylate kinase	A0A223FN12	Murmansk_poxvirus	1.1e-13	31.2
WP_109490154.1\|1251894_1254744_+	cell surface protein	NA	NA	NA	NA
WP_109490001.1\|1256015_1256883_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.9e-22	29.4
WP_045913535.1\|1257226_1258168_-	acetylglutamate kinase	NA	NA	NA	NA
WP_045917888.1\|1258115_1258736_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_045919257.1\|1258732_1260436_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_109490156.1\|1263354_1264770_-	amino acid permease	NA	NA	NA	NA
WP_162562876.1\|1265207_1265456_-	hypothetical protein	NA	NA	NA	NA
WP_174182863.1\|1265639_1268045_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	2.7e-110	34.0
WP_109490158.1\|1268177_1269038_+	TIGR01459 family HAD-type hydrolase	NA	NA	NA	NA
WP_012461430.1\|1269590_1269920_+	monovalent cation/H(+) antiporter subunit G	NA	NA	NA	NA
WP_109490159.1\|1269916_1270507_+	DUF4040 domain-containing protein	NA	NA	NA	NA
WP_109490160.1\|1270527_1270962_+	Na(+)/H(+) antiporter subunit B	NA	NA	NA	NA
WP_080943541.1\|1270939_1271341_+	cation:proton antiporter subunit C	NA	NA	NA	NA
WP_109490161.1\|1271333_1272824_+	cation:proton antiporter	NA	NA	NA	NA
WP_045918998.1\|1272833_1274306_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_045919000.1\|1277179_1277539_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_045919001.1\|1277519_1277846_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_045919002.1\|1278088_1279072_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1297211 : 1482424

116

Bodo_saltans_virus(24.32%)

integrase,tRNA,transposase

attL 1311945:1311975|attR 1463723:1463754

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174182856.1\|1297211_1298531_-\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	6.9e-15	25.1
WP_109490166.1\|1300668_1301970_-	malate dehydrogenase	NA	NA	NA	NA
WP_045918793.1\|1301989_1302916_-	AEC family transporter	NA	NA	NA	NA
WP_045918792.1\|1303225_1303825_+	hypothetical protein	NA	NA	NA	NA
WP_045918791.1\|1303888_1304272_+	hypothetical protein	NA	NA	NA	NA
WP_109490167.1\|1305424_1305610_-	HNH endonuclease	NA	NA	NA	NA
WP_109490168.1\|1305764_1306631_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.4e-21	28.8
WP_109490169.1\|1309864_1311340_-	ankyrin repeat domain-containing protein	Q70GU1	Fowlpox_virus	1.3e-06	28.3
1311945:1311975	attL	NA	NA	NA	NA
WP_109490170.1\|1312837_1313986_-	tetratricopeptide repeat protein	NA	NA	NA	NA
1311945:1311975	attL	NA	NA	NA	NA
WP_109489789.1\|1315926_1316247_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_109490172.1\|1317547_1318363_-	hypothetical protein	NA	NA	NA	NA
WP_109490173.1\|1319382_1319712_-	conjugal transfer protein	NA	NA	NA	NA
WP_174182864.1\|1319711_1319894_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_109490174.1\|1319988_1320111_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_045913241.1\|1320413_1320749_-	hypothetical protein	NA	NA	NA	NA
WP_109490445.1\|1320801_1321230_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041621607.1\|1322694_1323285_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.3e-26	48.9
WP_109490175.1\|1324093_1324958_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.3e-21	33.8
WP_109490176.1\|1326157_1328308_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	9.5e-107	37.2
WP_109490177.1\|1329292_1330729_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	4.2e-50	32.3
WP_045918013.1\|1330793_1332140_-\|tRNA	glutamate--tRNA ligase	A0A2K9L594	Tupanvirus	3.4e-09	34.8
WP_109490178.1\|1332319_1334362_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.2e-98	36.8
WP_109490179.1\|1334389_1335643_-	MFS transporter	NA	NA	NA	NA
WP_109490180.1\|1335679_1338244_-	type IV secretion system protein	NA	NA	NA	NA
WP_109490181.1\|1338236_1341509_-	type IV secretion system protein	NA	NA	NA	NA
WP_109490182.1\|1341562_1345450_-	type IV secretion system protein	NA	NA	NA	NA
WP_109490183.1\|1345471_1347919_-	type IV secretion system protein	NA	NA	NA	NA
WP_109490184.1\|1347918_1350336_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_012461380.1\|1350346_1350634_-	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_109490185.1\|1350949_1352890_-	primosomal protein N'	NA	NA	NA	NA
WP_109490186.1\|1353076_1354612_+\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	5.1e-94	38.8
WP_109490187.1\|1354624_1355413_+	TatD family hydrolase	NA	NA	NA	NA
WP_012461376.1\|1355971_1356838_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_045918026.1\|1358612_1359278_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	4.2e-13	40.2
WP_109490189.1\|1361218_1362086_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.1e-21	29.1
WP_155377128.1\|1363920_1364088_-	hypothetical protein	NA	NA	NA	NA
WP_162551756.1\|1364235_1364370_-	hypothetical protein	NA	NA	NA	NA
WP_109490190.1\|1365519_1366998_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.1e-37	29.1
WP_174182878.1\|1367255_1368650_-	class II fumarate hydratase	NA	NA	NA	NA
1367192:1367222	attR	NA	NA	NA	NA
WP_045914051.1\|1368719_1369397_-	histidine phosphotransferase	NA	NA	NA	NA
1367192:1367222	attR	NA	NA	NA	NA
WP_109490192.1\|1370936_1371134_+	hypothetical protein	NA	NA	NA	NA
WP_109490193.1\|1371386_1371749_+	hypothetical protein	NA	NA	NA	NA
WP_174182879.1\|1373173_1373515_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_109490195.1\|1373534_1375388_-	Fe-S protein assembly chaperone HscA	F2Y0P3	Organic_Lake_phycodnavirus	4.6e-73	36.9
WP_109490196.1\|1375374_1375878_-	co-chaperone HscB	NA	NA	NA	NA
WP_109490197.1\|1375890_1376265_-	iron-sulfur cluster assembly accessory protein	A0A1B1IT29	uncultured_Mediterranean_phage	4.9e-11	33.3
WP_012461222.1\|1376277_1376703_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.4e-46	73.8
WP_045919507.1\|1376742_1378014_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.0e-36	39.3
WP_109490198.1\|1378028_1379312_-	cysteine desulfurase	H7BUW1	unidentified_phage	3.9e-31	38.2
WP_012461225.1\|1379323_1379770_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_109490199.1\|1379973_1380675_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_045912440.1\|1380968_1382216_+	cell division protein FtsA	NA	NA	NA	NA
WP_109490200.1\|1382194_1383505_+	hypothetical protein	NA	NA	NA	NA
WP_109490201.1\|1383489_1385241_+	glycosyltransferase	NA	NA	NA	NA
WP_162562877.1\|1386490_1386652_+	hypothetical protein	NA	NA	NA	NA
WP_045918774.1\|1387852_1388647_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_109490202.1\|1388941_1389448_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_109490203.1\|1389666_1390533_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.6e-20	28.8
WP_109490204.1\|1392783_1393651_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.0e-22	29.1
WP_162562878.1\|1393684_1393915_+	hypothetical protein	NA	NA	NA	NA
WP_109490205.1\|1394031_1394970_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_109490206.1\|1395011_1397009_+	lytic transglycosylase domain-containing protein	A0A0S2SXL7	Bacillus_phage	2.6e-05	33.9
WP_045918235.1\|1397529_1398297_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_052692508.1\|1398332_1399472_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_064591327.1\|1399817_1401254_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_109490207.1\|1401250_1401655_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_109490208.1\|1402440_1403307_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.2e-21	29.1
WP_045919545.1\|1405161_1406556_+	hypothetical protein	NA	NA	NA	NA
WP_109490209.1\|1407604_1410832_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.4e-21	27.2
WP_109490210.1\|1411280_1412147_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	29.8
WP_109490211.1\|1412163_1412268_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_050897521.1\|1412720_1412960_-	hypothetical protein	NA	NA	NA	NA
WP_045919275.1\|1413524_1414532_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_109490001.1\|1415861_1416729_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.9e-22	29.4
WP_109490212.1\|1417417_1418866_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	7.2e-74	37.5
WP_045918635.1\|1418874_1419408_-	hypothetical protein	NA	NA	NA	NA
WP_045918636.1\|1421124_1421316_-	hypothetical protein	NA	NA	NA	NA
WP_045918502.1\|1421478_1421991_-	hypothetical protein	NA	NA	NA	NA
WP_109489895.1\|1422938_1423415_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_174182874.1\|1423589_1424174_+\|integrase	tyrosine-type recombinase/integrase	B6SD77	Bacteriophage	9.8e-14	35.9
WP_045918504.1\|1424635_1424953_+	hypothetical protein	NA	NA	NA	NA
WP_109490213.1\|1424982_1425165_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_045918856.1\|1425164_1425494_+	hypothetical protein	NA	NA	NA	NA
WP_109490164.1\|1425474_1427958_+	TraC family protein	NA	NA	NA	NA
WP_045919252.1\|1427942_1428845_+	TraU family protein	NA	NA	NA	NA
WP_045919253.1\|1428931_1429252_+	conjugal transfer protein	NA	NA	NA	NA
WP_109490214.1\|1431065_1432376_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109490215.1\|1434591_1437255_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_045919452.1\|1437262_1438405_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045919050.1\|1438572_1438920_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045919047.1\|1438921_1439227_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_109490216.1\|1440178_1441102_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109490446.1\|1441153_1442248_-	toprim domain-containing protein	NA	NA	NA	NA
WP_045917117.1\|1447181_1447637_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_162562879.1\|1447720_1447864_+	hypothetical protein	NA	NA	NA	NA
WP_109490217.1\|1447960_1449163_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045919181.1\|1449355_1450354_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	5.6e-86	65.3
WP_045919182.1\|1450472_1451051_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.7e-07	30.9
WP_045917205.1\|1453126_1453936_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	7.4e-20	27.1
WP_162562880.1\|1453939_1454107_-	hypothetical protein	NA	NA	NA	NA
WP_109490219.1\|1454109_1454487_-	hypothetical protein	NA	NA	NA	NA
WP_109490220.1\|1454534_1455179_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	3.7e-14	32.8
WP_064613103.1\|1455213_1455789_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9LAT2	Tupanvirus	1.0e-07	31.9
WP_109490221.1\|1456021_1457458_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.0e-72	36.9
WP_109490222.1\|1463242_1464109_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.0e-22	29.8
WP_080503910.1\|1465532_1465619_-	hypothetical protein	NA	NA	NA	NA
WP_174182865.1\|1466293_1468918_+	pyruvate, phosphate dikinase	A0A2I7QIA2	Vibrio_phage	1.2e-63	32.8
WP_109490224.1\|1470129_1470804_-	queuosine precursor transporter	NA	NA	NA	NA
WP_109490225.1\|1472154_1472883_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_011944645.1\|1472938_1473163_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_045914383.1\|1473170_1473668_+	ATP synthase subunit B	NA	NA	NA	NA
WP_162562881.1\|1473680_1474145_+	hypothetical protein	NA	NA	NA	NA
WP_109490227.1\|1476372_1478661_-	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	3.9e-74	43.0
WP_109490228.1\|1479157_1480825_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	8.1e-45	27.9
WP_109490229.1\|1480965_1481799_-	hypothetical protein	NA	NA	NA	NA
WP_109490230.1\|1482190_1482424_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1502276 : 1576929

Bodo_saltans_virus(54.55%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109489838.1\|1502276_1503245_-\|transposase	transposase	A0A1S7J231	Thermus_phage	1.7e-23	29.5
WP_109490244.1\|1503616_1504177_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_012460827.1\|1504192_1505161_-\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	5.9e-24	30.2
WP_109490245.1\|1505371_1505869_+\|transposase	transposase	NA	NA	NA	NA
WP_109490246.1\|1507323_1508190_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	8.5e-22	29.4
WP_109490247.1\|1508930_1511402_+	hypothetical protein	NA	NA	NA	NA
WP_045918894.1\|1512640_1513930_+	hypothetical protein	NA	NA	NA	NA
WP_109490248.1\|1514569_1516438_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_045915711.1\|1516583_1517237_-	dTMP kinase	M1PSC7	Streptococcus_phage	6.4e-22	34.1
WP_109490249.1\|1517229_1518303_-	cell division protein ZapE	NA	NA	NA	NA
WP_109490250.1\|1518373_1519057_-	hypothetical protein	NA	NA	NA	NA
WP_109490251.1\|1519065_1520430_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_109490252.1\|1520495_1523165_-	DNA polymerase I	A0A1B1IST8	uncultured_Mediterranean_phage	2.7e-42	30.7
WP_109490448.1\|1523595_1525047_-	sodium:solute symporter family protein	NA	NA	NA	NA
WP_045918931.1\|1525867_1526698_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_045918932.1\|1526853_1527207_+\|transposase	transposase	NA	NA	NA	NA
WP_109490253.1\|1528302_1529169_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.8e-22	29.4
WP_174182851.1\|1529415_1529820_+\|transposase	transposase	NA	NA	NA	NA
WP_109490254.1\|1530010_1530181_-	hypothetical protein	NA	NA	NA	NA
WP_109490255.1\|1530789_1533585_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045912757.1\|1536426_1537815_-	2-polyprenylphenol 6-hydroxylase	A0A0R6PKQ6	Moraxella_phage	6.5e-32	25.9
WP_109490256.1\|1537811_1538585_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_045912755.1\|1539121_1539604_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_045912754.1\|1539619_1541122_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_109490257.1\|1541371_1543912_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	6.1e-28	27.6
WP_045919027.1\|1543942_1544305_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_109490258.1\|1544593_1545461_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.7e-20	28.4
WP_011945086.1\|1545542_1546412_-	RMD1 family protein	NA	NA	NA	NA
WP_045918765.1\|1548705_1549785_-	COX15/CtaA family protein	NA	NA	NA	NA
WP_109490259.1\|1550991_1551195_+	hypothetical protein	NA	NA	NA	NA
WP_109490260.1\|1551208_1552076_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.1e-21	29.1
WP_045918762.1\|1552667_1555151_-	hypothetical protein	NA	NA	NA	NA
WP_109490449.1\|1555189_1557793_-	hypothetical protein	NA	NA	NA	NA
WP_045918360.1\|1559882_1560506_-	CvpA family protein	NA	NA	NA	NA
WP_045918361.1\|1560502_1561075_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_109490261.1\|1561247_1562990_+	cation:proton antiporter	NA	NA	NA	NA
WP_109490262.1\|1562970_1563468_+	hypothetical protein	NA	NA	NA	NA
WP_109490263.1\|1563743_1564958_+	aspartate kinase	NA	NA	NA	NA
WP_162562885.1\|1566105_1566294_-	hypothetical protein	NA	NA	NA	NA
WP_109490264.1\|1566748_1567828_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_109490265.1\|1567831_1568959_-	cell division protein FtsW	NA	NA	NA	NA
WP_109490266.1\|1568965_1570384_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_109490267.1\|1570466_1571093_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_109490268.1\|1573536_1574404_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.5e-21	29.1
WP_045918438.1\|1575556_1576252_+	hypothetical protein	NA	NA	NA	NA
WP_109490269.1\|1576446_1576929_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_14

1581111 : 1669812

Bodo_saltans_virus(31.25%)

transposase,tRNA,integrase,protease

attL 1611903:1611961|attR 1682411:1682469

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109490272.1\|1581111_1582572_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_109490273.1\|1582574_1584053_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_045913370.1\|1584052_1584352_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_045918511.1\|1584434_1586171_-	ribonuclease J	NA	NA	NA	NA
WP_011944869.1\|1586307_1587045_-	response regulator transcription factor	A0A0K0PVG9	Roseobacter_phage	1.5e-14	57.7
WP_162562886.1\|1590438_1590573_+	hypothetical protein	NA	NA	NA	NA
WP_109490275.1\|1592806_1593673_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.1e-21	29.1
WP_108883788.1\|1594128_1594308_+	hypothetical protein	NA	NA	NA	NA
WP_011944868.1\|1595140_1595935_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_011944867.1\|1597893_1598514_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-59	59.3
WP_162562887.1\|1599466_1599784_+	HNH endonuclease	NA	NA	NA	NA
WP_162562888.1\|1599732_1600059_-\|transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-11	40.6
WP_109490275.1\|1600055_1600923_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.1e-21	29.1
WP_162562849.1\|1600955_1601114_+	hypothetical protein	NA	NA	NA	NA
WP_109490277.1\|1601816_1603523_+	hypothetical protein	NA	NA	NA	NA
WP_045913638.1\|1603752_1604328_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	4.6e-08	29.2
WP_064612913.1\|1604362_1605007_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	1.7e-14	33.0
WP_109490278.1\|1605054_1605558_+	hypothetical protein	NA	NA	NA	NA
WP_109490279.1\|1606924_1607641_+	hypothetical protein	NA	NA	NA	NA
WP_109490280.1\|1607992_1608721_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109490281.1\|1608742_1609600_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109490282.1\|1609700_1610279_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.1e-06	30.9
WP_109490283.1\|1610397_1611372_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-84	64.1
1611903:1611961	attL	NA	NA	NA	NA
WP_109490284.1\|1612538_1615976_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	4.6e-10	22.6
WP_109490450.1\|1617019_1618192_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045919563.1\|1618605_1619061_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109490421.1\|1619356_1622158_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	1.6e-05	24.2
WP_045919435.1\|1622294_1622993_+	hypothetical protein	NA	NA	NA	NA
WP_109490451.1\|1623807_1624902_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109490285.1\|1624953_1625937_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109490286.1\|1625946_1627701_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109490287.1\|1627706_1628846_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109490288.1\|1628858_1631492_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_109490289.1\|1632791_1633490_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109490290.1\|1633486_1635178_-	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109490291.1\|1635174_1635558_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_174182866.1\|1635580_1636558_-	TraU family protein	NA	NA	NA	NA
WP_012460825.1\|1636558_1636762_-	hypothetical protein	NA	NA	NA	NA
WP_109490292.1\|1636852_1637512_-	conjugal transfer protein	NA	NA	NA	NA
WP_109490293.1\|1637508_1640001_-	TraC family protein	NA	NA	NA	NA
WP_045915079.1\|1639981_1640311_-	hypothetical protein	NA	NA	NA	NA
WP_109489719.1\|1640310_1641633_-	TraB/VirB10 family protein	NA	NA	NA	NA
WP_109490294.1\|1641671_1642004_-	hypothetical protein	NA	NA	NA	NA
WP_045918201.1\|1642363_1642840_-	hypothetical protein	NA	NA	NA	NA
WP_045918202.1\|1642836_1643388_-	conjugal transfer protein	NA	NA	NA	NA
WP_109490295.1\|1643810_1644566_-\|integrase	site-specific integrase	B6SD77	Bacteriophage	2.8e-13	26.9
WP_045918206.1\|1646143_1646611_+	single-stranded DNA-binding protein	A0A1B1IVU7	uncultured_Mediterranean_phage	1.0e-37	51.3
WP_045918207.1\|1646689_1647550_+	peptidase	NA	NA	NA	NA
WP_109490296.1\|1647753_1648617_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.6e-20	34.4
WP_109490297.1\|1649161_1650652_+	carboxypeptidase M32	NA	NA	NA	NA
WP_109490298.1\|1650751_1652119_-	magnesium transporter	NA	NA	NA	NA
WP_109490452.1\|1652304_1653324_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_109490299.1\|1653343_1655863_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.7e-158	38.5
WP_109490300.1\|1656479_1657211_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_109490301.1\|1658700_1660164_-	exopolyphosphatase	NA	NA	NA	NA
WP_174182880.1\|1665309_1665807_-	hypothetical protein	NA	NA	NA	NA
WP_109490302.1\|1665964_1666390_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_109490303.1\|1668945_1669812_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.9e-22	28.8
1682411:1682469	attR	NA	NA	NA	NA

DBSCAN-SWA_15

1685118 : 1713199

Bodo_saltans_virus(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109490311.1\|1685118_1685985_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.4e-21	28.8
WP_109490312.1\|1686770_1688039_+	ankyrin repeat domain-containing protein	A0A068EG22	Pigeonpox_virus	3.5e-16	33.7
WP_109490313.1\|1688729_1689596_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	28.4
WP_109490314.1\|1689785_1691546_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_109490315.1\|1691650_1693123_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_109490316.1\|1693263_1694841_-	GHKL domain-containing protein	W8CYF6	Bacillus_phage	1.2e-05	24.4
WP_109490317.1\|1695510_1697559_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_109490318.1\|1697728_1698514_-	hypothetical protein	NA	NA	NA	NA
WP_109490319.1\|1698815_1699684_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.2e-20	29.1
WP_045918575.1\|1699714_1700038_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045919470.1\|1701311_1701773_-\|transposase	transposase	NA	NA	NA	NA
WP_109489726.1\|1701983_1702952_+\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_109490321.1\|1702967_1703528_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109489967.1\|1703579_1704674_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109490322.1\|1708673_1709600_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.0e-85	62.0
WP_045918922.1\|1709720_1710326_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	3.7e-08	34.1
WP_045918923.1\|1710367_1710862_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_045919296.1\|1710880_1711348_-	sensor histidine kinase	NA	NA	NA	NA
WP_162562895.1\|1711835_1712300_-	sensor histidine kinase	NA	NA	NA	NA
WP_109490324.1\|1712331_1713199_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	8.5e-22	29.1

DBSCAN-SWA_16

1747416 : 1809059

Bodo_saltans_virus(35.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109490341.1\|1747416_1748283_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.2e-21	33.8
WP_045918951.1\|1749332_1750526_-	hypothetical protein	NA	NA	NA	NA
WP_045918946.1\|1752730_1753354_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	2.7e-14	32.4
WP_109490342.1\|1756082_1756325_-	ATP-binding protein	NA	NA	NA	NA
WP_045919371.1\|1756450_1757260_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	5.3e-18	26.0
WP_045919370.1\|1757263_1757767_-	hypothetical protein	NA	NA	NA	NA
WP_109489972.1\|1757869_1758436_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	6.1e-13	31.3
WP_109490343.1\|1760191_1761907_-	hypothetical protein	NA	NA	NA	NA
WP_109489726.1\|1762466_1763435_-\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_045919596.1\|1763645_1763936_+	hypothetical protein	NA	NA	NA	NA
WP_011945084.1\|1764402_1764828_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.8e-17	37.4
WP_109490344.1\|1766872_1767740_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.5e-21	29.4
WP_012461764.1\|1767825_1768494_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_045919521.1\|1769136_1769328_+	hypothetical protein	NA	NA	NA	NA
WP_109490455.1\|1769586_1769874_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA
WP_045918094.1\|1770753_1771230_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_045919522.1\|1771252_1772524_-\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	1.3e-23	22.4
WP_012461767.1\|1772526_1773012_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_109490345.1\|1773016_1773379_-	NADH:ubiquinone oxidoreductase	NA	NA	NA	NA
WP_012461769.1\|1773350_1773857_-	ribonuclease HI	J9Q745	Salmonella_phage	2.4e-32	48.5
WP_109490346.1\|1773856_1774396_-	hypothetical protein	NA	NA	NA	NA
WP_109490347.1\|1774524_1775346_-	DsbA family protein	NA	NA	NA	NA
WP_109490348.1\|1775474_1775795_-	ferredoxin family protein	NA	NA	NA	NA
WP_109490349.1\|1775799_1776510_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_109490350.1\|1776502_1777234_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_109490351.1\|1777232_1778063_+	glutamine synthetase	NA	NA	NA	NA
WP_109490352.1\|1778459_1779327_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.4e-21	29.1
WP_162562897.1\|1779366_1780062_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109489726.1\|1780743_1781712_+\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	8.6e-23	29.8
WP_109490353.1\|1782018_1783626_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109490354.1\|1783615_1784155_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109490355.1\|1784380_1785247_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	7.2e-21	28.8
WP_109490356.1\|1788660_1789554_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_045918797.1\|1789550_1790219_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_045918796.1\|1790230_1790791_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	5.3e-25	41.1
WP_109490357.1\|1790900_1792307_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_174182867.1\|1793750_1793930_+	hypothetical protein	NA	NA	NA	NA
WP_174182882.1\|1794110_1795457_+	hypothetical protein	NA	NA	NA	NA
WP_045918831.1\|1795697_1796273_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	1.0e-07	29.2
WP_045918832.1\|1796307_1796952_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	1.8e-13	32.2
WP_045918833.1\|1797054_1797558_+	hypothetical protein	NA	NA	NA	NA
WP_045913641.1\|1797561_1798371_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	4.1e-18	26.0
WP_109490359.1\|1801263_1802130_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	7.2e-21	28.8
WP_109490360.1\|1802995_1803934_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	2.4e-14	34.6
WP_109490361.1\|1804045_1804435_+	DUF2660 domain-containing protein	NA	NA	NA	NA
WP_109490362.1\|1804541_1805408_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.7e-22	28.8
WP_109490363.1\|1805786_1806167_+	hypothetical protein	NA	NA	NA	NA
WP_109490364.1\|1806203_1807718_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_109490365.1\|1808191_1809059_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	6.5e-22	29.4

DBSCAN-SWA_17

1835122 : 1895604

Bodo_saltans_virus(45.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109490370.1\|1835122_1835989_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.8
WP_162562895.1\|1836021_1836486_+	sensor histidine kinase	NA	NA	NA	NA
WP_045919296.1\|1836973_1837441_+	sensor histidine kinase	NA	NA	NA	NA
WP_045918923.1\|1837459_1837954_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_045918922.1\|1837995_1838601_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	3.7e-08	34.1
WP_045919297.1\|1838721_1839648_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.6e-85	59.4
WP_109490371.1\|1839988_1840855_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.5e-21	28.8
WP_162562891.1\|1840956_1841307_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109490457.1\|1841634_1844436_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	7.8e-08	25.4
WP_109490373.1\|1846091_1846958_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	8.5e-22	29.1
WP_109490374.1\|1847998_1848643_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	6.8e-08	30.5
WP_045918624.1\|1848677_1849253_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	1.3e-07	29.8
WP_045918623.1\|1852282_1852762_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_045918622.1\|1852808_1853708_+	RNA polymerase sigma factor RpoH	G8CLC7	Synechococcus_phage	2.7e-10	26.7
WP_045918621.1\|1854391_1854931_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_109490376.1\|1856040_1856907_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.4e-21	29.4
WP_109490377.1\|1859082_1860570_-	ankyrin repeat domain-containing protein	A0A0M3ZHP2	Turkeypox_virus	3.7e-09	33.3
WP_109490378.1\|1862986_1863854_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
WP_109490379.1\|1863894_1864701_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109490380.1\|1864855_1866019_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109490381.1\|1867235_1868102_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	7.9e-20	28.4
WP_109489938.1\|1869976_1870843_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.9e-21	29.1
WP_109490382.1\|1871690_1875128_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	7.8e-10	22.6
WP_109490383.1\|1875868_1877425_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_045919651.1\|1877598_1878495_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_045919652.1\|1878727_1879948_+	MFS transporter	NA	NA	NA	NA
WP_109490384.1\|1881020_1882799_+	DUF1601 domain-containing protein	NA	NA	NA	NA
WP_108883849.1\|1882887_1883010_-	hypothetical protein	NA	NA	NA	NA
WP_109490385.1\|1883325_1885194_+	hypothetical protein	NA	NA	NA	NA
WP_109490386.1\|1885762_1886776_-	serine/threonine dehydratase	NA	NA	NA	NA
WP_162562899.1\|1886913_1889265_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.5e-171	43.0
WP_064644301.1\|1889328_1889979_-	hypothetical protein	NA	NA	NA	NA
WP_109490388.1\|1890108_1890855_-	ComF family protein	NA	NA	NA	NA
WP_109490389.1\|1890838_1891876_-\|tRNA	tRNA dimethylallyltransferase	NA	NA	NA	NA
WP_109490390.1\|1891945_1892563_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	7.1e-23	41.9
WP_109490391.1\|1892897_1893765_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	29.1
WP_162562892.1\|1893797_1893944_+	hypothetical protein	NA	NA	NA	NA
WP_045919669.1\|1894087_1894339_+	DUF2312 domain-containing protein	A0A076YL00	Rhizobium_phage	6.7e-12	52.0
WP_109490359.1\|1894736_1895604_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	7.2e-21	28.8

Anti-CRISPR protein detection

Acr_ID: NZ_LS398547.1|WP_162562889.1|1671178_1671385_-|hypothetical-protein

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Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage
NZ_LS398547.1\|WP_162562889.1\|1671178_1671385_-\|hypothetical-protein	1671178_1671385_- Protein sequences of NZ_LS398547.1\|WP_162562889.1\|1671178_1671385_-\|hypothetical-protein >NZ_LS398547.1\|WP_162562889.1\|1671178_1671385_-\|hypothetical-protein MEFECKIHMYQNDKLFILYDAKGTNTEGDEIIAEVISYFEFNDQKIFKIHGQVYLLKGNPSDVDMSQE	68 aa aa	NA	NA	NA	No	NA

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS398547

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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