CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	9 crisprs	cas3,DEDDh,DinG,csa3,WYL	6	3	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483311_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_1

133736-133820

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483311_1

>merge|NZ_LS483311|1|133736-133820|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGGAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>NZ_LS483311|1|1|133736-133820|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGGAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_001013481.1\|132627_133587_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_LS483311.1\|WP_001230678.1\|125861_126749_+\|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN	unknown	unknown	gnl\|CDD\|187543
NZ_LS483311.1\|WP_049280609.1\|142505_149681_+\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_LS483311.1\|WP_000590844.1\|135117_135858_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_LS483311.1\|WP_000239647.1\|122882_124088_+\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000723449.1\|128141_129287_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_LS483311.1\|WP_000171919.1\|134263_134776_+\|DUF4242-domain-containing-protein	unknown	unknown	gnl\|CDD\|379428
NZ_LS483311.1\|WP_000290397.1\|130494_131982_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143435
NZ_LS483311.1\|WP_000826670.1\|135871_136846_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_LS483311.1\|WP_000197961.1\|136842_137604_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_LS483311.1\|WP_000779492.1\|126802_128065_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
NZ_LS483311.1\|WP_001291007.1\|124088_125294_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_LS483311.1\|WP_000826862.1\|140808_142059_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_LS483311.1\|WP_000171648.1\|137616_138648_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_LS483311.1\|WP_000480599.1\|129351_129678_-\|staphylobilin-forming-heme-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
NZ_LS483311.1\|WP_000356963.1\|133881_134085_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_001237004.1\|129684_130068_-\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_LS483311.1\|WP_000825098.1\|125304_125862_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|225059
NZ_LS483311.1\|WP_000706137.1\|139397_140423_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
NZ_LS483311.1\|WP_001092004.1\|138864_139224_+\|DUF2294-domain-containing-protein	unknown	unknown	gnl\|CDD\|227896

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_001013481.1\|132627_133587_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
NZ_LS483311.1\|WP_001230678.1\|125861_126749_+\|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.08984e-118
NZ_LS483311.1\|WP_049280609.1\|142505_149681_+\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_LS483311.1\|WP_001092004.1\|138864_139224_+\|DUF2294-domain-containing-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
NZ_LS483311.1\|WP_000723449.1\|128141_129287_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_LS483311.1\|WP_000171919.1\|134263_134776_+\|DUF4242-domain-containing-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
NZ_LS483311.1\|WP_000290397.1\|130494_131982_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
NZ_LS483311.1\|WP_000826670.1\|135871_136846_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.66137e-50
NZ_LS483311.1\|WP_000197961.1\|136842_137604_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
NZ_LS483311.1\|WP_000779492.1\|126802_128065_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_LS483311.1\|WP_001291007.1\|124088_125294_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.43416e-72
NZ_LS483311.1\|WP_000826862.1\|140808_142059_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
NZ_LS483311.1\|WP_000171648.1\|137616_138648_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.07089e-20
NZ_LS483311.1\|WP_000480599.1\|129351_129678_-\|staphylobilin-forming-heme-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	3.1425e-64
NZ_LS483311.1\|WP_000590844.1\|135117_135858_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	6.91027e-113
NZ_LS483311.1\|WP_001237004.1\|129684_130068_-\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	5.80598e-41
NZ_LS483311.1\|WP_000825098.1\|125304_125862_+\|sugar-transferase	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
NZ_LS483311.1\|WP_000706137.1\|139397_140423_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0

>NZ_LS483311.1|WP_001013481.1|132627_133587_+|cation-transporter
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>NZ_LS483311.1|WP_000290397.1|130494_131982_+|aldehyde-dehydrogenase-family-protein
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>NZ_LS483311.1|WP_001237004.1|129684_130068_-|YbaN-family-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>NZ_LS483311.1|WP_000480599.1|129351_129678_-|staphylobilin-forming-heme-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDIDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>NZ_LS483311.1|WP_000723449.1|128141_129287_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRPDKPDEFVPLRHK
>NZ_LS483311.1|WP_000779492.1|126802_128065_+|nucleotide-sugar-dehydrogenase
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEIYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDICLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKYVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVAKSSFEDVSYYNYGNIFNFIDK
>NZ_LS483311.1|WP_001230678.1|125861_126749_+|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>NZ_LS483311.1|WP_000825098.1|125304_125862_+|sugar-transferase
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>NZ_LS483311.1|WP_001291007.1|124088_125294_+|glycosyltransferase-family-4-protein
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVAKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPEMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>NZ_LS483311.1|WP_000239647.1|122882_124088_+|capsular-polysaccharide-biosynthesis-protein
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITLIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>NZ_LS483311.1|WP_000356963.1|133881_134085_-|hypothetical-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>NZ_LS483311.1|WP_000171919.1|134263_134776_+|DUF4242-domain-containing-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>NZ_LS483311.1|WP_000590844.1|135117_135858_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>NZ_LS483311.1|WP_000826670.1|135871_136846_+|ABC-transporter-substrate-binding-protein
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNDDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>NZ_LS483311.1|WP_000197961.1|136842_137604_+|ABC-transporter-permease
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>NZ_LS483311.1|WP_000171648.1|137616_138648_+|acyl-CoA/acyl-ACP-dehydrogenase
MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNVQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLNELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>NZ_LS483311.1|WP_001092004.1|138864_139224_+|DUF2294-domain-containing-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>NZ_LS483311.1|WP_000706137.1|139397_140423_+|NAD-dependent-formate-dehydrogenase
MKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>NZ_LS483311.1|WP_000826862.1|140808_142059_+|MFS-transporter
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>NZ_LS483311.1|WP_049280609.1|142505_149681_+|amino-acid-adenylation-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPTSSANYDLEAFFKQELSTYHFNDSPLFKFKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHLNRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYLPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSGLNVAQLQQAVQHLIARHEILRTQYIVVDDEVRQRIVADVVADFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYIINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEVVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQAAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQMEQDLKQYLNDHLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMHQNQQSLVALPDNLSELQKIVMSRYNLGVLEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: NZ_LS483311_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_2

242224-242314

Orphan

Consensus_repeat	Method
GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483311_2

>merge|NZ_LS483311|2|242224-242314|CRISPRCasFinder
GGGCCCACACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAA

>NZ_LS483311|2|2|242224-242314|CRISPRCasFinder
GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	TTTCTTTTCGAAATTCTCTTTGTTG
GGGCCCACACCCCAACTTGCATTGTCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_000950281.1\|250441_252196_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_LS483311.1\|WP_001012748.1\|231083_233180_+\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_LS483311.1\|WP_000531481.1\|233164_233632_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_LS483311.1\|WP_001792906.1\|253051_253495_+\|antiholin-like-murein-hydrolase-modulator-LrgA	unknown	unknown	gnl\|CDD\|235222
NZ_LS483311.1\|WP_000598262.1\|242735_243905_+\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_LS483311.1\|WP_031588299.1\|252198_252939_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|184495
NZ_LS483311.1\|WP_000975345.1\|247657_249379_+\|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|376098
NZ_LS483311.1\|WP_000610203.1\|244889_245915_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176199
NZ_LS483311.1\|WP_000646195.1\|235436_236492_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176219
NZ_LS483311.1\|WP_000645615.1\|236663_237707_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_LS483311.1\|WP_000607067.1\|253487_254189_+\|antiholin-like-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
NZ_LS483311.1\|WP_000872486.1\|244180_244897_+\|D-ribitol-5-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
NZ_LS483311.1\|WP_000815795.1\|233654_233933_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_LS483311.1\|WP_000169005.1\|239990_241685_+\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_LS483311.1\|WP_000120109.1\|234159_235419_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_LS483311.1\|WP_000230358.1\|236493_236640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_111724362.1\|245936_247625_+\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_LS483311.1\|WP_000610170.1\|238943_239969_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176199
NZ_LS483311.1\|WP_000638479.1\|238234_238951_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
NZ_LS483311.1\|WP_000608832.1\|249522_250197_+\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	unknown	unknown	gnl\|CDD\|183940

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_000950281.1\|250441_252196_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_LS483311.1\|WP_001012748.1\|231083_233180_+\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.64004e-84
NZ_LS483311.1\|WP_000531481.1\|233164_233632_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.75683e-37
NZ_LS483311.1\|WP_001792906.1\|253051_253495_+\|antiholin-like-murein-hydrolase-modulator-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	8.44339e-64
NZ_LS483311.1\|WP_000598262.1\|242735_243905_+\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.25735e-161
NZ_LS483311.1\|WP_031588299.1\|252198_252939_+\|DNA-binding-response-regulator	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	1.56134e-152
NZ_LS483311.1\|WP_000975345.1\|247657_249379_+\|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	5.09942e-35
NZ_LS483311.1\|WP_000610203.1\|244889_245915_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	0
NZ_LS483311.1\|WP_000646195.1\|235436_236492_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176219	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.42275e-146
NZ_LS483311.1\|WP_000645615.1\|236663_237707_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	2.26749e-178
NZ_LS483311.1\|WP_000607067.1\|253487_254189_+\|antiholin-like-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
NZ_LS483311.1\|WP_000872486.1\|244180_244897_+\|D-ribitol-5-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	2.28851e-105
NZ_LS483311.1\|WP_000815795.1\|233654_233933_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.43648e-34
NZ_LS483311.1\|WP_000169005.1\|239990_241685_+\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	2.76945e-115
NZ_LS483311.1\|WP_000120109.1\|234159_235419_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	0
NZ_LS483311.1\|WP_111724362.1\|245936_247625_+\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	2.02592e-118
NZ_LS483311.1\|WP_000610170.1\|238943_239969_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	2.87903e-180
NZ_LS483311.1\|WP_000638479.1\|238234_238951_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	3.11452e-126
NZ_LS483311.1\|WP_000608832.1\|249522_250197_+\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	3.56125e-153

>NZ_LS483311.1|WP_000169005.1|239990_241685_+|CDP-glycerol-glycerophosphotransferase-family-protein
MTKTKQAIHIDNIYWERVQLYIEGHSEGVDLTSGQFVLRNLTETKTLEANEMKIDGNTFLCRFNVAILDDGYYLPMDKYLFVYHDQLEYIGQLNPNIIDQAYAALNEEQIEEYNELTTQNGKANYVLANEAKVFRKGGVSQHTVYTITPEIASDVNEFVFDIEITLPQEKSGVIATSAHWLHKQGHKASFESRSFLFKAIFNITKLLHIKRSKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDYDIQTVFKANITDRRKWRDKFRLPYLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGVPRTDVLFDETYATQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNISREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEVEKVVPFLDKHFKYQDGRSSERLVKDLFRR
>NZ_LS483311.1|WP_000610170.1|238943_239969_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MINQVYQLVAPRQFDVTYNNVDIYGNHVIVRPLYLSICAADQRYYTGRRDENVLRKKLPMSLVHEAVGEVVFDSKGVFEKGTKVVMVPNTPTEKHDVIAENYLPSSYFRSSGYDGFMQDYVVMAHDRIVPLPDDIDLSTISYTELVSVSYHAIQRFERKSIPLKTSFGIWGDGNLGYITAILLRKLYPEAKIYVFGKTDYKLSHFSFVDDIFTVNQIPADLKIDHAFECVGGKGSQVALQQIVEHISPEGSIALLGVSELPVEVNTRLVLEKGLTLIGSSRSGSKDFEQVVDLYRKYPDIVEKLALLKGHEINVCTMQDIVQAFEMDLSTSWGKTVLKWTI
>NZ_LS483311.1|WP_000638479.1|238234_238951_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGGTDRNETIMNIIDYIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAEKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDSYRALSSAQKEILSDACKIIVESGHPVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
>NZ_LS483311.1|WP_000645615.1|236663_237707_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGVEDLRYEDNEKPVIESVNDVIVKVRATGICGSDTSRYKKMGPYIKGMPFGHEFSGVVDAIGSDVTHVNVGDKVTGCPAIPCYQCEYCLKGEYARCEKLFVIGSYEPGSFAEYVKLPAQNVLKVPDNVDYIEAAMVEPSAVVAHGFYKSNIQPGMTVAVMGCGSIGLLAIQWARIFGAAHIIAIDIDAHKLDIATSLGAHQTINSKEENLEKFIENHYANQIDLAIESSGAKVTIGQILTLPKKGGEVVLLGIPYDDIEIDRVHFEKILRNELTVCGSWNCLSSNFPGKEWTATLHYMKTKDINVKPIISHFLPLEKGPETFDKLVNKKERFDKVMFTIY
>NZ_LS483311.1|WP_000230358.1|236493_236640_+|hypothetical-protein
MVESMLTFMLGPLRQITDFYMEHLLVSNSIVIAGYFATGIFKKKKVVN
>NZ_LS483311.1|WP_000646195.1|235436_236492_+|zinc-binding-dehydrogenase
MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIHTYEGHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCESKDYNLCNHRKGIGTQVDGAFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAHHGVSKIQVNSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQTDLKTYINGITDGYGADVVVECSGAVPAARQGLDILRKKGYYSQIGIFKDAEIPFDMEKVIQKEITVVGSRSQKPADWEPSLQLMADGLVNAEALVTKIYDISKWDEAYQHLKSGEGIKALLKPLDLDENEGEN
>NZ_LS483311.1|WP_000120109.1|234159_235419_+|PTS-galactitol-transporter-subunit-IIC
MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLVKNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKTMNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQVICLKVADWTAPMMSEFFDLPGVSIATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLAGYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAVALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIVGTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
>NZ_LS483311.1|WP_000815795.1|233654_233933_+|PTS-sugar-transporter-subunit-IIB
MKQVLVACGAGIATSTVVNNAIEEMAKEHNIKVDIKQIKITEVGPYEDTADLLVTTAMTKKEYKFPVINARNFLTGIGIEETKQQILTELQK
>NZ_LS483311.1|WP_000531481.1|233164_233632_+|PTS-sugar-transporter-subunit-IIA
MGQQLVHKENIMLNLSATDKESVLSQMSEVLFQNGFVKSTFKDAVIDREKEFATGLPTHLCSVAIPHTDVEHINHRTIGVAVLEKEVPFIEMGTLDQQTEVKIVFMLAMDKVDDQLKLLQQLMQIFQSEEKLEQILRTKDETILATLINDYLEYN
>NZ_LS483311.1|WP_001012748.1|231083_233180_+|transcription-antiterminator
MNGDNQQILREIVLNPTIHGKELESIFGLSRRQLGYRIQKINLWLEQEGYPKLERTSQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFSIETRRYYLMLMLFSKENAMSLNHFSIDLQVSKNTVIHDINHVKEQLENHGLSLKYSRKHGYEIVGDEFEVRRFFIKLIDQRLNHDITKSEVLKALNLTFEDIAYQKDKIKQVEQFLKSRFIDKSLSSLPYVLCVIRRRIQSGHVMNPLNINYQYLRDTKEYQATEIMTQHEPDLPEAEKLYLTLHLLSTSVQWTDLQESDSISNLTMAIAQMIHHFEQITFINIEDKEKLSQQLLLHLTPAFYRIKYNLTDRDELINPLQGNYQSLFHMVKQSCQSLTEYFGKSLPDNEIAYLTMLFGGSLRRQDENFDGKIKAIIVCTQGTSVSQMMLYELRNLFPEIIFLDAISLRTFENYTLDYDIVFSPMFVLTHKKLFITKVALSENEQRKLRKEVMKYINKESADIDKEINKLMALIERTTTVNDITELRDGLEDFIANYNSISTINGSIVTQNKTLDLADLIPARHVKRMHHVENIVEAIAKASDVLVANHFIDIKYIHEMQQVFDDSYMVIMQNIAIPHAYSEKHVHKTAMSMLILQEPIYMSDGTAIHIIVPIAAVDKVTHLRALLQLRDVAQDNDAIKRIIQSRKNSDVNEILKNYSNKEARENGWDSN
>NZ_LS483311.1|WP_000598262.1|242735_243905_+|CDP-glycerol-glycerophosphotransferase-family-protein
MIKTTIKKLIEHSIYTTFKLLSKLPNKNLIYFESFHGKQYSDNPKALYEYLTEHSDAQLIWGVKKGYEHIFQQHNVPYVTKFSMKWFLAMPRAKAWMINTRTPDWLYKSPRTTYLQTWHGTPLKKIGLDISNVKMLGTNTQNYQDGFKKESQRWDYLVSPNPYSTSIFQHAFHVSRDKILETGYPRNDKLSHKRNDTEYINGIKTRLNIPLDKKVIMYAPTWRDDEAIREGSYQFNVNFDIEALRQALDDDYVILLRMHYLVVTRIDEHDDFVKDVSDYEDISDLYLISDALVTDYSSVMFDFGVLKRPQIFYAYDLDKYGDELRGFYMDYKKELPGPIVENQTALIDALKQIDETTNEYIEARTVFYQKFCSLEDGHASQRICQTIFK
>NZ_LS483311.1|WP_000872486.1|244180_244897_+|D-ribitol-5-phosphate-cytidylyltransferase
MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTHTKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHRIIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKESYAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
>NZ_LS483311.1|WP_000610203.1|244889_245915_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MINQVYQLVAPRQFEVTYNNVDIYSDYVIVRPLYMSICAADQRYYTGSRDENVLSQKLPMSLIHEGVGEVVFDSKGVFNKGTKVVMVPNTPTEKDDVIAENYLKSSYFRSSGHDGFMQDFVLLNHDRAVPLPDDIDLSIISYTELVTVSLHAIRRFEKKSISNKNTFGIWGDGNLGYITAILLRKLYPESKIYVFGKTDYKLSHFSFVDDVFFINKIPEGLTFDHAFECVGGRGSQSAINQMIDYISPEGSIALLGVSEFPVEVNTRLVLEKGLTLIGSSRSGSKDFQDVVDLYIQYPDIVDKLALLKGQEFEIATINDLTEAFEADLSTSWGKTVLKWIM
>NZ_LS483311.1|WP_111724362.1|245936_247625_+|CDP-glycerol-glycerophosphotransferase-family-protein
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDILFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>NZ_LS483311.1|WP_000975345.1|247657_249379_+|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase
MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISMKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>NZ_LS483311.1|WP_000608832.1|249522_250197_+|iron-sulfur-cluster-repair-di-iron-protein-ScdA
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>NZ_LS483311.1|WP_000950281.1|250441_252196_+|sensor-histidine-kinase
MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>NZ_LS483311.1|WP_031588299.1|252198_252939_+|DNA-binding-response-regulator
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>NZ_LS483311.1|WP_001792906.1|253051_253495_+|antiholin-like-murein-hydrolase-modulator-LrgA
MVVKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>NZ_LS483311.1|WP_000607067.1|253487_254189_+|antiholin-like-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF

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Crispr_ID: NZ_LS483311_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_3

794387-794469

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483311_3

>merge|NZ_LS483311|3|794387-794469|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>NZ_LS483311|3|3|794387-794469|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_000193751.1\|796104_797610_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_LS483311.1\|WP_000499195.1\|804092_804248_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000983677.1\|787615_789397_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_LS483311.1\|WP_000022323.1\|782031_783036_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NZ_LS483311.1\|WP_000692521.1\|800137_800536_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|224694
NZ_LS483311.1\|WP_000562498.1\|802721_803693_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NZ_LS483311.1\|WP_001790641.1\|795925_796027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000589260.1\|789618_790596_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_LS483311.1\|WP_000197271.1\|793695_794238_+\|5'-3'-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
NZ_LS483311.1\|WP_000663030.1\|792342_793401_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_LS483311.1\|WP_001068503.1\|798470_799337_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_LS483311.1\|WP_000876318.1\|804286_805258_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
NZ_LS483311.1\|WP_000708692.1\|781337_782048_+\|allophanate-hydrolase-subunit-1	unknown	unknown	gnl\|CDD\|224960
NZ_LS483311.1\|WP_076692510.1\|785720_787604_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_LS483311.1\|WP_000930014.1\|797950_798451_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
NZ_LS483311.1\|WP_000429014.1\|794917_795835_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_LS483311.1\|WP_000855505.1\|800498_802604_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
NZ_LS483311.1\|WP_000180991.1\|790588_792103_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_LS483311.1\|WP_000098285.1\|783509_785450_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	unknown	unknown	gnl\|CDD\|224287
NZ_LS483311.1\|WP_001790169.1\|781043_781250_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_000193751.1\|796104_797610_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
NZ_LS483311.1\|WP_000983677.1\|787615_789397_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LS483311.1\|WP_000022323.1\|782031_783036_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
NZ_LS483311.1\|WP_000692521.1\|800137_800536_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
NZ_LS483311.1\|WP_000562498.1\|802721_803693_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
NZ_LS483311.1\|WP_001068503.1\|798470_799337_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.88244e-10
NZ_LS483311.1\|WP_000589260.1\|789618_790596_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
NZ_LS483311.1\|WP_000197271.1\|793695_794238_+\|5'-3'-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107
NZ_LS483311.1\|WP_000663030.1\|792342_793401_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_LS483311.1\|WP_000876318.1\|804286_805258_+\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.32603e-150
NZ_LS483311.1\|WP_000708692.1\|781337_782048_+\|allophanate-hydrolase-subunit-1	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
NZ_LS483311.1\|WP_000930014.1\|797950_798451_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
NZ_LS483311.1\|WP_000429014.1\|794917_795835_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78
NZ_LS483311.1\|WP_000855505.1\|800498_802604_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NZ_LS483311.1\|WP_000180991.1\|790588_792103_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
NZ_LS483311.1\|WP_000098285.1\|783509_785450_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
NZ_LS483311.1\|WP_076692510.1\|785720_787604_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0

>NZ_LS483311.1|WP_000197271.1|793695_794238_+|5'-3'-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>NZ_LS483311.1|WP_000663030.1|792342_793401_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>NZ_LS483311.1|WP_000180991.1|790588_792103_+|ABC-transporter-permease/substrate-binding-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>NZ_LS483311.1|WP_000589260.1|789618_790596_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>NZ_LS483311.1|WP_000983677.1|787615_789397_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>NZ_LS483311.1|WP_076692510.1|785720_787604_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MGMEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEHLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>NZ_LS483311.1|WP_000098285.1|783509_785450_+|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>NZ_LS483311.1|WP_000022323.1|782031_783036_+|biotin-dependent-carboxyltransferase-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>NZ_LS483311.1|WP_000708692.1|781337_782048_+|allophanate-hydrolase-subunit-1
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>NZ_LS483311.1|WP_001790169.1|781043_781250_+|hypothetical-protein
MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIATITTVISFILVYALIHELMPFVVRAMDLMYHQ
>NZ_LS483311.1|WP_000429014.1|794917_795835_-|diacylglycerol-kinase-family-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>NZ_LS483311.1|WP_001790641.1|795925_796027_+|hypothetical-protein
MVINEIDFYRVGRENIVIAVYNEHIKFLFILIS
>NZ_LS483311.1|WP_000193751.1|796104_797610_-|peptide-MFS-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>NZ_LS483311.1|WP_000930014.1|797950_798451_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>NZ_LS483311.1|WP_001068503.1|798470_799337_-|DMT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFYIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>NZ_LS483311.1|WP_000692521.1|800137_800536_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>NZ_LS483311.1|WP_000855505.1|800498_802604_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>NZ_LS483311.1|WP_000562498.1|802721_803693_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>NZ_LS483311.1|WP_000499195.1|804092_804248_+|hypothetical-protein
MFYFTLSKQNTHSEKLNFSLIANINKIDTKLFERLLKLWSKNATINEKYYQ
>NZ_LS483311.1|WP_000876318.1|804286_805258_+|ABC-transporter-permease
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ

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Crispr_ID: NZ_LS483311_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_4

1090937-1091019

Orphan

Consensus_repeat	Method
TGTTGGGGCCCATCCCCCAACTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483311_4

>merge|NZ_LS483311|4|1090937-1091019|CRISPRCasFinder
TGTTGGGGCCCATCCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCATCCCCAACTTGCA

>NZ_LS483311|4|4|1090937-1091019|CRISPRCasFinder
TGTTGGGGCCCATCCCCCAACTTGCA	TTGCCTGTAGAATTTCTTTTCGAAATTCTCT
GTGTTGGGGCCCATCCCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_000671245.1\|1083953_1085147_+\|teichoic-acid-D-Ala-esterase-FmtA	unknown	unknown	gnl\|CDD\|365903
NZ_LS483311.1\|WP_000032836.1\|1088553_1089654_-\|cytochrome-aa3-quinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|273621
NZ_LS483311.1\|WP_031824630.1\|1089958_1090084_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000238669.1\|1100434_1101001_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
NZ_LS483311.1\|WP_000017736.1\|1085970_1086576_-\|cytochrome-aa3-quinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131943
NZ_LS483311.1\|WP_000088431.1\|1081767_1082238_-\|DUF2538-family-protein	unknown	unknown	gnl\|CDD\|287742
NZ_LS483311.1\|WP_000032740.1\|1095758_1097948_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_LS483311.1\|WP_001037831.1\|1090224_1090542_-\|DUF5011-domain-containing-protein	unknown	unknown	gnl\|CDD\|374521
NZ_LS483311.1\|WP_000030811.1\|1099403_1100432_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_LS483311.1\|WP_001797236.1\|1085683_1085962_-\|cytochrome-aa3-quinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|225667
NZ_LS483311.1\|WP_000483713.1\|1097926_1099411_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
NZ_LS483311.1\|WP_001010762.1\|1086565_1088554_-\|cytochrome-aa3-quinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131928
NZ_LS483311.1\|WP_000491986.1\|1081178_1081613_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_LS483311.1\|WP_000225837.1\|1091467_1092328_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184552
NZ_LS483311.1\|WP_000666806.1\|1095094_1095766_+\|phosphoribosylformylglycinamidine-synthase-I	unknown	unknown	gnl\|CDD\|235140
NZ_LS483311.1\|WP_000848350.1\|1094829_1095093_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|224741
NZ_LS483311.1\|WP_000174053.1\|1094125_1094830_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_LS483311.1\|WP_001010413.1\|1092997_1094122_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_LS483311.1\|WP_001031975.1\|1082285_1083503_-\|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase	unknown	unknown	gnl\|CDD\|224235
NZ_LS483311.1\|WP_000861572.1\|1092528_1093011_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_000671245.1\|1083953_1085147_+\|teichoic-acid-D-Ala-esterase-FmtA	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.32794e-60
NZ_LS483311.1\|WP_000032836.1\|1088553_1089654_-\|cytochrome-aa3-quinol-oxidase-subunit-II	gnl\|CDD\|273621	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b). [Energy metabolism, Electron transport].	7.48398e-146
NZ_LS483311.1\|WP_000238669.1\|1100434_1101001_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	1.14152e-91
NZ_LS483311.1\|WP_000017736.1\|1085970_1086576_-\|cytochrome-aa3-quinol-oxidase-subunit-III	gnl\|CDD\|131943	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	2.41545e-111
NZ_LS483311.1\|WP_000088431.1\|1081767_1082238_-\|DUF2538-family-protein	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	4.64019e-106
NZ_LS483311.1\|WP_000032740.1\|1095758_1097948_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_LS483311.1\|WP_001037831.1\|1090224_1090542_-\|DUF5011-domain-containing-protein	gnl\|CDD\|374521	pfam16403, DUF5011, Domain of unknown function (DUF5011). This small family of proteins is functionally uncharacterized. This family is found in Bacteroides, Prevotella, and Parabateroides. Proteins in this family are around 230 amino acids in length.	1.27284e-18
NZ_LS483311.1\|WP_000030811.1\|1099403_1100432_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_LS483311.1\|WP_001797236.1\|1085683_1085962_-\|cytochrome-aa3-quinol-oxidase-subunit-IV	gnl\|CDD\|225667	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].	6.51974e-26
NZ_LS483311.1\|WP_000483713.1\|1097926_1099411_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
NZ_LS483311.1\|WP_001010762.1\|1086565_1088554_-\|cytochrome-aa3-quinol-oxidase-subunit-I	gnl\|CDD\|131928	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	0
NZ_LS483311.1\|WP_000491986.1\|1081178_1081613_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	8.52255e-24
NZ_LS483311.1\|WP_000225837.1\|1091467_1092328_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184552	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_LS483311.1\|WP_000666806.1\|1095094_1095766_+\|phosphoribosylformylglycinamidine-synthase-I	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	7.86572e-140
NZ_LS483311.1\|WP_000848350.1\|1094829_1095093_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|224741	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism].	2.71239e-30
NZ_LS483311.1\|WP_000174053.1\|1094125_1094830_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	2.31998e-136
NZ_LS483311.1\|WP_001010413.1\|1092997_1094122_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NZ_LS483311.1\|WP_001031975.1\|1082285_1083503_-\|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	4.20248e-79
NZ_LS483311.1\|WP_000861572.1\|1092528_1093011_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	6.14005e-86

>NZ_LS483311.1|WP_001037831.1|1090224_1090542_-|DUF5011-domain-containing-protein
MNKLLQSLSALGVSATLVTPNLNADATTNTTPQIKGANDIVIKKGQDYNLLNGISAFDKEDGDLTDKIKVDGQIDTSKSGKYQIKYHVTDSDGAIKISTRYIEVK
>NZ_LS483311.1|WP_031824630.1|1089958_1090084_+|hypothetical-protein
MERKRKHFKKEFAKSNLSLNNEKWKFVCSKSKHFFKRAVKF
>NZ_LS483311.1|WP_000032836.1|1088553_1089654_-|cytochrome-aa3-quinol-oxidase-subunit-II
MSKFKSLLLLFGTLILLSGCSNIEIFNAKGPVASSQKFLILYSIVFMLVICFVVLGMFAIFIYKYSYNKNAESGKMHHNAIIETIWFVIPIIIVAALAIPTVKTLYDYEKPPKSEKDPMVVYAVSAGYKWFFAYPDEHIETVNTLTIPKDRPVVFKLQAMDTMTSFWIPQLGGQKYAMTGMTMNWTLEASQTGTFRGRNSNFNGEGFSRQTFKVNAVSQKDYDKWVKEVKGKKTLDQDTFDKQLLPSTPNKALEFNGTHMAFVDPAADPEYIFYAYKRFNFELKDPNFTSEENMFKDVSDKPLIPARKAQITNANYKRHGMKLMILGNDEPYNNEFKKDESKNAKEMKKISKDAQDQDNDDHGGGH
>NZ_LS483311.1|WP_001010762.1|1086565_1088554_-|cytochrome-aa3-quinol-oxidase-subunit-I
MNFPWDQLLVKGNWMITMAQIGAPFLVIGLIAVITYFKLWKYLYKEWFTSVDHKKIGIMYLICAVLMFVRGGIDALLIRAQLTVPDNKFLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVVPLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAGEFSPGPGVNYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLTVALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFARKRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWLLTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTGVVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRLYTYMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPREATGDNWDGLGRTLEWTTASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTIGGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEARLREARIKEREAVSHES
>NZ_LS483311.1|WP_000017736.1|1085970_1086576_-|cytochrome-aa3-quinol-oxidase-subunit-III
MSHDTNTIDSRTHEGELNKLGFWIFITAEFALFGTLFATLLTLQHGGDYAGKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQEKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSLGIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIGMVYSG
>NZ_LS483311.1|WP_001797236.1|1085683_1085962_-|cytochrome-aa3-quinol-oxidase-subunit-IV
MKHTVGFIASIVLTLLAVYVTLYTSLTFHAKLTIIFGFAFVQAGLQLLMFMHLTEGKDGRLQTFKVIFALVITLCFVVGTYWVMQGGHSSHL
>NZ_LS483311.1|WP_000671245.1|1083953_1085147_+|teichoic-acid-D-Ala-esterase-FmtA
MKFNKVKLVIHACVLLFIIISIALIFHRLQTKTHSIDPIHKETKLSDNEKYLVDRNKEKVAPSKLKEVYNSKDPKYKKIDKYLQSSLFNGSVAIYENGKLKMSKGYGYQDFEKGIKNTPNTMFLIGSAQKFSTGLLLKQLEEEHKININDPVSKYLPWFKTSKPIPLKDLMLHQSGLYKYKSSKDYKNLDQAVKAIQKRGIDPKKYKKHMYNDGNYLVLAKVIEEVTGKSYAENYYTKIGDPLKLQHTAFYDEQPFKKYLAKGYAYNSTGLSFLRPNILDQYYGAGNLYMTPTDMGKLITQIQQYKLFSPKITNPLLHEFGTKQYPDEYRYGFYAKPTLNRLNGGFFGQVFTVYYNDKYVVVLALNVKGNNEVRIKHIYNDILKQNKPYNTKGVIVQ
>NZ_LS483311.1|WP_001031975.1|1082285_1083503_-|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase
MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNANRQSNLRDNKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLRKDLELSPINDKNDFLDQRVINHYGSLIPLTPLDNSLLRKEQNDTTDKDKTSNENSDSTNNSDSSNQQQPATDQNSNQNQGGTQQAPQASNNQNGVVN
>NZ_LS483311.1|WP_000088431.1|1081767_1082238_-|DUF2538-family-protein
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
>NZ_LS483311.1|WP_000491986.1|1081178_1081613_-|GNAT-family-N-acetyltransferase
MFSKVNNQKMLEDCFYIRKKVFVEEQGVPEESEIDEYESESIHLIGYDNGQPVATARIRPINETTVKIERVAVMKSHRGQGMGRMLMQAVESLAKDEGFYVATMNAQCHAIPFYESLNFKMRGNIFLEEGIEHIEMTKKLTSLN
>NZ_LS483311.1|WP_000225837.1|1091467_1092328_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MVAKILDGKQIAKDYRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENGKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGIDS
>NZ_LS483311.1|WP_000861572.1|1092528_1093011_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
>NZ_LS483311.1|WP_001010413.1|1092997_1094122_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSGRKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN
>NZ_LS483311.1|WP_000174053.1|1094125_1094830_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
>NZ_LS483311.1|WP_000848350.1|1094829_1095093_+|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MKTIELHITLQPQVLDTQGQTLTRAVHDLGYAQVNDIRVGKVLYMTVDEVSDEKVHNIITTLSEKLFANTVIEEYSYKVLDDEKENA
>NZ_LS483311.1|WP_000666806.1|1095094_1095766_+|phosphoribosylformylglycinamidine-synthase-I
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLATEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>NZ_LS483311.1|WP_000032740.1|1095758_1097948_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGNEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>NZ_LS483311.1|WP_000483713.1|1097926_1099411_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>NZ_LS483311.1|WP_000030811.1|1099403_1100432_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDASRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>NZ_LS483311.1|WP_000238669.1|1100434_1101001_+|phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNKDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK

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Crispr_ID: NZ_LS483311_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_5

1698383-1698470

Orphan

Consensus_repeat	Method
CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483311_5

>merge|NZ_LS483311|5|1698383-1698470|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCA

>NZ_LS483311|5|5|1698383-1698470|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	CCCCAACTTGCACATTATAGTAAGCTGA
CTTTTCGTCAGCTTCTGTGTTGGGGCCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_025174327.1\|1702103_1704305_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
NZ_LS483311.1\|WP_000627144.1\|1695842_1696820_-\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
NZ_LS483311.1\|WP_001119021.1\|1692008_1693148_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
NZ_LS483311.1\|WP_000439693.1\|1704309_1704771_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
NZ_LS483311.1\|WP_000218103.1\|1696920_1698045_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_LS483311.1\|WP_050959410.1\|1687563_1688247_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223961
NZ_LS483311.1\|WP_000084822.1\|1705588_1706305_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_LS483311.1\|WP_001282563.1\|1701072_1702047_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_LS483311.1\|WP_000182211.1\|1695184_1695811_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
NZ_LS483311.1\|WP_001019326.1\|1706661_1707246_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_LS483311.1\|WP_000048060.1\|1688490_1688667_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_LS483311.1\|WP_000725162.1\|1707235_1707805_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
NZ_LS483311.1\|WP_000108667.1\|1688959_1690306_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NZ_LS483311.1\|WP_001190127.1\|1690312_1691065_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NZ_LS483311.1\|WP_001274017.1\|1700776_1701028_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_LS483311.1\|WP_000034716.1\|1693283_1695116_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_LS483311.1\|WP_001104607.1\|1691066_1692005_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_LS483311.1\|WP_000368344.1\|1698607_1700431_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_LS483311.1\|WP_072361794.1\|1704862_1705549_-\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NZ_LS483311.1\|WP_001088020.1\|1706307_1706661_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_025174327.1\|1702103_1704305_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.27846e-90
NZ_LS483311.1\|WP_000627144.1\|1695842_1696820_-\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
NZ_LS483311.1\|WP_001119021.1\|1692008_1693148_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
NZ_LS483311.1\|WP_000439693.1\|1704309_1704771_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
NZ_LS483311.1\|WP_000218103.1\|1696920_1698045_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_LS483311.1\|WP_050959410.1\|1687563_1688247_-\|hypothetical-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	1.21607e-62
NZ_LS483311.1\|WP_000084822.1\|1705588_1706305_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00559e-15
NZ_LS483311.1\|WP_001282563.1\|1701072_1702047_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
NZ_LS483311.1\|WP_000182211.1\|1695184_1695811_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
NZ_LS483311.1\|WP_001019326.1\|1706661_1707246_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	8.54529e-80
NZ_LS483311.1\|WP_000048060.1\|1688490_1688667_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
NZ_LS483311.1\|WP_000725162.1\|1707235_1707805_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.98239e-76
NZ_LS483311.1\|WP_000108667.1\|1688959_1690306_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_LS483311.1\|WP_001190127.1\|1690312_1691065_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.46402e-91
NZ_LS483311.1\|WP_001274017.1\|1700776_1701028_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
NZ_LS483311.1\|WP_000034716.1\|1693283_1695116_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_LS483311.1\|WP_001104607.1\|1691066_1692005_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
NZ_LS483311.1\|WP_000368344.1\|1698607_1700431_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_LS483311.1\|WP_072361794.1\|1704862_1705549_-\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	2.53337e-32
NZ_LS483311.1\|WP_001088020.1\|1706307_1706661_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47

>NZ_LS483311.1|WP_000218103.1|1696920_1698045_-|oxygen-independent-coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>NZ_LS483311.1|WP_000627144.1|1695842_1696820_-|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>NZ_LS483311.1|WP_000182211.1|1695184_1695811_-|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>NZ_LS483311.1|WP_000034716.1|1693283_1695116_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>NZ_LS483311.1|WP_001119021.1|1692008_1693148_-|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>NZ_LS483311.1|WP_001104607.1|1691066_1692005_-|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>NZ_LS483311.1|WP_001190127.1|1690312_1691065_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>NZ_LS483311.1|WP_000108667.1|1688959_1690306_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>NZ_LS483311.1|WP_000048060.1|1688490_1688667_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>NZ_LS483311.1|WP_050959410.1|1687563_1688247_-|hypothetical-protein
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGIILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>NZ_LS483311.1|WP_000368344.1|1698607_1700431_-|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELMPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDIIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>NZ_LS483311.1|WP_001274017.1|1700776_1701028_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>NZ_LS483311.1|WP_001282563.1|1701072_1702047_-|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>NZ_LS483311.1|WP_025174327.1|1702103_1704305_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLYVALSMIVGVLWNSSKVLSTFLFILLLYIAYRKNKIVYAPTSLFLIIFSSWYLHYSQQAIFNYINYIERTSQFNERAQVIQIQRQDSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>NZ_LS483311.1|WP_000439693.1|1704309_1704771_-|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>NZ_LS483311.1|WP_072361794.1|1704862_1705549_-|ComEA-family-DNA-binding-protein
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>NZ_LS483311.1|WP_000084822.1|1705588_1706305_-|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESKILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>NZ_LS483311.1|WP_001088020.1|1706307_1706661_-|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>NZ_LS483311.1|WP_001019326.1|1706661_1707246_-|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVSETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>NZ_LS483311.1|WP_000725162.1|1707235_1707805_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: NZ_LS483311_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_6

1818524-1818610

Orphan

Consensus_repeat	Method
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483311_6

>merge|NZ_LS483311|6|1818524-1818610|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACCATGCAAGTTGGGGTGGGCCCCAACATAGAA

>NZ_LS483311|6|6|1818524-1818610|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGACC
ATGCAAGTTGGGGTGGGCCCCAACATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_000717561.1\|1809175_1810144_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_LS483311.1\|WP_000161676.1\|1821926_1822982_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_LS483311.1\|WP_000058389.1\|1812408_1813638_-\|NAD-dependent-malic-enzyme-4	unknown	unknown	gnl\|CDD\|235976
NZ_LS483311.1\|WP_000277602.1\|1820203_1820617_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_LS483311.1\|WP_000226924.1\|1814087_1817285_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_LS483311.1\|WP_000040063.1\|1825302_1826505_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_LS483311.1\|WP_000777188.1\|1821062_1821752_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_LS483311.1\|WP_000634175.1\|1824556_1825057_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_LS483311.1\|WP_000829175.1\|1802241_1803363_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|184468
NZ_LS483311.1\|WP_000690012.1\|1823297_1824416_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_LS483311.1\|WP_000883645.1\|1810412_1811357_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_LS483311.1\|WP_000626078.1\|1817305_1818247_-\|pApA-hydrolase-Pde2	unknown	unknown	gnl\|CDD\|223691
NZ_LS483311.1\|WP_031775021.1\|1823060_1823174_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000136257.1\|1827662_1828157_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_LS483311.1\|WP_000123164.1\|1800924_1802193_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_LS483311.1\|WP_001232648.1\|1807396_1809154_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NZ_LS483311.1\|WP_000840578.1\|1826592_1827540_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_LS483311.1\|WP_000160435.1\|1818700_1819999_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226594
NZ_LS483311.1\|WP_000818525.1\|1803710_1805072_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_LS483311.1\|WP_000471571.1\|1811356_1812214_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_000717561.1\|1809175_1810144_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_LS483311.1\|WP_000161676.1\|1821926_1822982_+\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	7.02579e-126
NZ_LS483311.1\|WP_000058389.1\|1812408_1813638_-\|NAD-dependent-malic-enzyme-4	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_LS483311.1\|WP_000277602.1\|1820203_1820617_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
NZ_LS483311.1\|WP_000226924.1\|1814087_1817285_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_LS483311.1\|WP_000040063.1\|1825302_1826505_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_LS483311.1\|WP_000777188.1\|1821062_1821752_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.09103e-133
NZ_LS483311.1\|WP_000634175.1\|1824556_1825057_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
NZ_LS483311.1\|WP_000829175.1\|1802241_1803363_-\|citrate-synthase	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
NZ_LS483311.1\|WP_000690012.1\|1823297_1824416_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_LS483311.1\|WP_000883645.1\|1810412_1811357_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_LS483311.1\|WP_000626078.1\|1817305_1818247_-\|pApA-hydrolase-Pde2	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.36211e-98
NZ_LS483311.1\|WP_000136257.1\|1827662_1828157_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	5.93419e-100
NZ_LS483311.1\|WP_000123164.1\|1800924_1802193_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_LS483311.1\|WP_001232648.1\|1807396_1809154_-\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NZ_LS483311.1\|WP_000840578.1\|1826592_1827540_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.61849e-56
NZ_LS483311.1\|WP_000160435.1\|1818700_1819999_-\|CBS-domain-containing-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
NZ_LS483311.1\|WP_000818525.1\|1803710_1805072_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_LS483311.1\|WP_000471571.1\|1811356_1812214_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0

>NZ_LS483311.1|WP_000626078.1|1817305_1818247_-|pApA-hydrolase-Pde2
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDESIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>NZ_LS483311.1|WP_000226924.1|1814087_1817285_-|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLVKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDIYMDHLSISIQGRKHVWIQDVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQKGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVVLSFYDETIKQMTTLGYINQKDSMFNNFIQSLNPSDIRLI
>NZ_LS483311.1|WP_000058389.1|1812408_1813638_-|NAD-dependent-malic-enzyme-4
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>NZ_LS483311.1|WP_000471571.1|1811356_1812214_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>NZ_LS483311.1|WP_000883645.1|1810412_1811357_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>NZ_LS483311.1|WP_000717561.1|1809175_1810144_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>NZ_LS483311.1|WP_001232648.1|1807396_1809154_-|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>NZ_LS483311.1|WP_000818525.1|1803710_1805072_+|amino-acid-permease
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>NZ_LS483311.1|WP_000829175.1|1802241_1803363_-|citrate-synthase
MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDYVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>NZ_LS483311.1|WP_000123164.1|1800924_1802193_-|NADP-dependent-isocitrate-dehydrogenase
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALSEFGDQVFTWQQYDEIVEKEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK
>NZ_LS483311.1|WP_000160435.1|1818700_1819999_-|CBS-domain-containing-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>NZ_LS483311.1|WP_000277602.1|1820203_1820617_+|universal-stress-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>NZ_LS483311.1|WP_000777188.1|1821062_1821752_-|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>NZ_LS483311.1|WP_000161676.1|1821926_1822982_+|aminopeptidase-P-family-protein
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGNRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>NZ_LS483311.1|WP_031775021.1|1823060_1823174_-|hypothetical-protein
MNDIDLIHYMLLMNIPAYVFLACLLHIAFRLGQKFMS
>NZ_LS483311.1|WP_000690012.1|1823297_1824416_-|alanine-dehydrogenase
MKIGIPSEIKNNENRVGLSPSGVHALVESGHIVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKINGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>NZ_LS483311.1|WP_000634175.1|1824556_1825057_+|universal-stress-protein
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>NZ_LS483311.1|WP_000040063.1|1825302_1826505_-|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>NZ_LS483311.1|WP_000840578.1|1826592_1827540_-|class-I-SAM-dependent-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINALKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKVRKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>NZ_LS483311.1|WP_000136257.1|1827662_1828157_-|thiol-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSEASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI

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Crispr_ID: NZ_LS483311_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_7

2015794-2015883

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LS483311_7

>merge|NZ_LS483311|7|2015794-2015883|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAATTTCTTTT

>NZ_LS483311|7|7|2015794-2015883|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CGAAATTCTCTGTGTTGGGGCCCACA
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_000544969.1\|2018243_2018975_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_LS483311.1\|WP_000999713.1\|2016188_2017175_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_LS483311.1\|WP_000228666.1\|2009570_2010035_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_LS483311.1\|WP_000037078.1\|2010594_2011812_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_LS483311.1\|WP_000180460.1\|2009223_2009424_-\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177
NZ_LS483311.1\|WP_000428172.1\|2010041_2010317_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_001250329.1\|2018976_2020290_-\|lipid-II-isoglutaminyl-synthase-subunit-MurT	unknown	unknown	gnl\|CDD\|223840
NZ_LS483311.1\|WP_000949467.1\|2020581_2021082_+\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NZ_LS483311.1\|WP_000613738.1\|2021471_2022026_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_LS483311.1\|WP_001670387.1\|2017605_2018019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000149064.1\|2013582_2014284_-\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|227100
NZ_LS483311.1\|WP_001017131.1\|2012542_2013586_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_LS483311.1\|WP_000636142.1\|2014901_2015660_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_LS483311.1\|WP_001790679.1\|2021163_2021256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000153535.1\|2011923_2012553_-\|two-component-system-response-regulator-VraR	unknown	unknown	gnl\|CDD\|225107
NZ_LS483311.1\|WP_000548775.1\|2023410_2023941_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_LS483311.1\|WP_000140172.1\|2022093_2023164_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_LS483311.1\|WP_001789555.1\|2007964_2009221_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
NZ_LS483311.1\|WP_001110179.1\|2014298_2014685_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_001790257.1\|2018047_2018158_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_000544969.1\|2018243_2018975_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.33663e-121
NZ_LS483311.1\|WP_000999713.1\|2016188_2017175_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
NZ_LS483311.1\|WP_000228666.1\|2009570_2010035_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
NZ_LS483311.1\|WP_000037078.1\|2010594_2011812_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.45634e-85
NZ_LS483311.1\|WP_000180460.1\|2009223_2009424_-\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
NZ_LS483311.1\|WP_000548775.1\|2023410_2023941_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.92343e-11
NZ_LS483311.1\|WP_001250329.1\|2018976_2020290_-\|lipid-II-isoglutaminyl-synthase-subunit-MurT	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.37755e-99
NZ_LS483311.1\|WP_000949467.1\|2020581_2021082_+\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
NZ_LS483311.1\|WP_000613738.1\|2021471_2022026_+\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_LS483311.1\|WP_000149064.1\|2013582_2014284_-\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
NZ_LS483311.1\|WP_001017131.1\|2012542_2013586_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
NZ_LS483311.1\|WP_000636142.1\|2014901_2015660_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
NZ_LS483311.1\|WP_000153535.1\|2011923_2012553_-\|two-component-system-response-regulator-VraR	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75115e-79
NZ_LS483311.1\|WP_001789555.1\|2007964_2009221_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
NZ_LS483311.1\|WP_000140172.1\|2022093_2023164_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0

>NZ_LS483311.1|WP_000636142.1|2014901_2015660_-|type-I-methionyl-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>NZ_LS483311.1|WP_001110179.1|2014298_2014685_-|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>NZ_LS483311.1|WP_000149064.1|2013582_2014284_-|cell-wall-active-antibiotics-response-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>NZ_LS483311.1|WP_001017131.1|2012542_2013586_-|sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>NZ_LS483311.1|WP_000153535.1|2011923_2012553_-|two-component-system-response-regulator-VraR
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>NZ_LS483311.1|WP_000037078.1|2010594_2011812_+|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDNNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>NZ_LS483311.1|WP_000428172.1|2010041_2010317_+|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>NZ_LS483311.1|WP_000228666.1|2009570_2010035_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>NZ_LS483311.1|WP_000180460.1|2009223_2009424_-|DUF1128-family-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>NZ_LS483311.1|WP_001789555.1|2007964_2009221_-|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHELKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>NZ_LS483311.1|WP_000999713.1|2016188_2017175_+|aromatic-acid-exporter-family-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>NZ_LS483311.1|WP_001670387.1|2017605_2018019_-|hypothetical-protein
MKPTKVILRDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>NZ_LS483311.1|WP_001790257.1|2018047_2018158_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>NZ_LS483311.1|WP_000544969.1|2018243_2018975_-|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>NZ_LS483311.1|WP_001250329.1|2018976_2020290_-|lipid-II-isoglutaminyl-synthase-subunit-MurT
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_LS483311.1|WP_000949467.1|2020581_2021082_+|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>NZ_LS483311.1|WP_001790679.1|2021163_2021256_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NZ_LS483311.1|WP_000613738.1|2021471_2022026_+|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_LS483311.1|WP_000140172.1|2022093_2023164_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_LS483311.1|WP_000548775.1|2023410_2023941_-|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLFLLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ

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Crispr_ID: NZ_LS483311_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_8

2252402-2252491

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_LS483311_8

>merge|NZ_LS483311|8|2252402-2252491|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCT

>NZ_LS483311|8|8|2252402-2252491|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_000070866.1\|2243715_2244159_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_LS483311.1\|WP_000019743.1\|2250047_2251028_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_LS483311.1\|WP_000160304.1\|2242884_2243595_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_LS483311.1\|WP_000908180.1\|2255351_2256134_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_LS483311.1\|WP_001127960.1\|2247534_2248473_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_LS483311.1\|WP_001024095.1\|2248908_2249574_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_LS483311.1\|WP_000334463.1\|2256365_2258171_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LS483311.1\|WP_001292149.1\|2262568_2263003_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_LS483311.1\|WP_001802298.1\|2252826_2252931_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000083806.1\|2258851_2260390_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_LS483311.1\|WP_000927340.1\|2260424_2262557_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_LS483311.1\|WP_000003759.1\|2249725_2250046_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_LS483311.1\|WP_000123402.1\|2245228_2246602_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_LS483311.1\|WP_001123303.1\|2244358_2244772_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_LS483311.1\|WP_001792784.1\|2253610_2253769_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_001792292.1\|2253447_2253618_+\|transposase	unknown	unknown	gnl\|CDD\|226950
NZ_LS483311.1\|WP_000648723.1\|2263002_2264109_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_LS483311.1\|WP_000495681.1\|2251293_2252385_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000808817.1\|2247273_2247504_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000370930.1\|2254426_2255284_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_000070866.1\|2243715_2244159_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NZ_LS483311.1\|WP_000019743.1\|2250047_2251028_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.20197e-108
NZ_LS483311.1\|WP_000160304.1\|2242884_2243595_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_LS483311.1\|WP_001127960.1\|2247534_2248473_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_LS483311.1\|WP_001024095.1\|2248908_2249574_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
NZ_LS483311.1\|WP_001292149.1\|2262568_2263003_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_LS483311.1\|WP_000927340.1\|2260424_2262557_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.17174e-68
NZ_LS483311.1\|WP_000083806.1\|2258851_2260390_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_LS483311.1\|WP_000003759.1\|2249725_2250046_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_LS483311.1\|WP_000123402.1\|2245228_2246602_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NZ_LS483311.1\|WP_001123303.1\|2244358_2244772_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
NZ_LS483311.1\|WP_001792292.1\|2253447_2253618_+\|transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00028059
NZ_LS483311.1\|WP_000648723.1\|2263002_2264109_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_LS483311.1\|WP_000908180.1\|2255351_2256134_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	8.27306e-106
NZ_LS483311.1\|WP_000334463.1\|2256365_2258171_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LS483311.1\|WP_000370930.1\|2254426_2255284_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.00207e-59

>NZ_LS483311.1|WP_000495681.1|2251293_2252385_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKETTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_LS483311.1|WP_000019743.1|2250047_2251028_+|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHAH
>NZ_LS483311.1|WP_000003759.1|2249725_2250046_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_LS483311.1|WP_001024095.1|2248908_2249574_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>NZ_LS483311.1|WP_001127960.1|2247534_2248473_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_LS483311.1|WP_000808817.1|2247273_2247504_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_LS483311.1|WP_000123402.1|2245228_2246602_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_LS483311.1|WP_001123303.1|2244358_2244772_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_LS483311.1|WP_000070866.1|2243715_2244159_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_LS483311.1|WP_000160304.1|2242884_2243595_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NZ_LS483311.1|WP_001802298.1|2252826_2252931_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_LS483311.1|WP_001792292.1|2253447_2253618_+|transposase
MSPKDTTRFETKPDHQAQFDWKESINFKTKDNQRIPLYIGVLLLYYSRFIIMHNNE
>NZ_LS483311.1|WP_001792784.1|2253610_2253769_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_LS483311.1|WP_000370930.1|2254426_2255284_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_LS483311.1|WP_000908180.1|2255351_2256134_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_LS483311.1|WP_000334463.1|2256365_2258171_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_LS483311.1|WP_000083806.1|2258851_2260390_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALLSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_LS483311.1|WP_000927340.1|2260424_2262557_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_LS483311.1|WP_001292149.1|2262568_2263003_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_LS483311.1|WP_000648723.1|2263002_2264109_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS

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Crispr_ID: NZ_LS483311_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483311_9

2264732-2264817

Orphan

Consensus_repeat	Method
CCAACTGATTTTTGCGTATCATTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483311_9

>merge|NZ_LS483311|9|2264732-2264817|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGTTTGCATATCTTTAGCTTTATTGTTTGCAACTGGGCCAACTGATGTTTGCGTATCATTAGT

>NZ_LS483311|9|9|2264732-2264817|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGT	TTGCATATCTTTAGCTTTATTGTTTGCAACTGGG
CCAACTGATGTTTGCGTATCATTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483311.1\|WP_000927340.1\|2260424_2262557_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_LS483311.1\|WP_001292149.1\|2262568_2263003_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_LS483311.1\|WP_111724431.1\|2288390_2289578_-\|UDPGP-type-1-family-protein	unknown	unknown	gnl\|CDD\|133036
NZ_LS483311.1\|WP_000047255.1\|2287688_2288372_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_LS483311.1\|WP_000521495.1\|2272200_2273556_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_LS483311.1\|WP_000894032.1\|2273582_2274515_-\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227193
NZ_LS483311.1\|WP_000347896.1\|2274516_2275326_-\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539
NZ_LS483311.1\|WP_001802298.1\|2252826_2252931_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_000167871.1\|2275514_2276423_-\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_LS483311.1\|WP_000958531.1\|2282617_2283682_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_LS483311.1\|WP_000083806.1\|2258851_2260390_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_LS483311.1\|WP_001141006.1\|2283829_2285272_-\|multidrug-efflux-MFS-transporter-LmrS	unknown	unknown	gnl\|CDD\|129794
NZ_LS483311.1\|WP_000636857.1\|2285594_2286068_-\|multidrug-efflux-transporter-SepA	unknown	unknown	gnl\|CDD\|374975
NZ_LS483311.1\|WP_001792784.1\|2253610_2253769_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483311.1\|WP_001792292.1\|2253447_2253618_+\|transposase	unknown	unknown	gnl\|CDD\|226950
NZ_LS483311.1\|WP_000648723.1\|2263002_2264109_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_LS483311.1\|WP_000908180.1\|2255351_2256134_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_LS483311.1\|WP_000334463.1\|2256365_2258171_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LS483311.1\|WP_000370930.1\|2254426_2255284_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_LS483311.1\|WP_001237506.1\|2286166_2287510_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_LS483311.1\|WP_000927340.1\|2260424_2262557_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.17174e-68
NZ_LS483311.1\|WP_001292149.1\|2262568_2263003_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_LS483311.1\|WP_111724431.1\|2288390_2289578_-\|UDPGP-type-1-family-protein	gnl\|CDD\|133036	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.	1.07412e-147
NZ_LS483311.1\|WP_000047255.1\|2287688_2288372_-\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	2.41003e-66
NZ_LS483311.1\|WP_000521495.1\|2272200_2273556_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_LS483311.1\|WP_000894032.1\|2273582_2274515_-\|YbbR-like-domain-containing-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.26423e-118
NZ_LS483311.1\|WP_000347896.1\|2274516_2275326_-\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	2.13611e-103
NZ_LS483311.1\|WP_000167871.1\|2275514_2276423_-\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	3.36534e-146
NZ_LS483311.1\|WP_000958531.1\|2282617_2283682_-\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	6.43129e-115
NZ_LS483311.1\|WP_000083806.1\|2258851_2260390_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_LS483311.1\|WP_001141006.1\|2283829_2285272_-\|multidrug-efflux-MFS-transporter-LmrS	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.08461e-81
NZ_LS483311.1\|WP_000636857.1\|2285594_2286068_-\|multidrug-efflux-transporter-SepA	gnl\|CDD\|374975	pfam17080, SepA, Multidrug Resistance efflux pump. SepA is a drug efflux protein that is involved in bacterial multidrug resistance. It is predicted to have four transmembrane domains.	3.20059e-30
NZ_LS483311.1\|WP_001792292.1\|2253447_2253618_+\|transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00028059
NZ_LS483311.1\|WP_000648723.1\|2263002_2264109_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_LS483311.1\|WP_000908180.1\|2255351_2256134_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	8.27306e-106
NZ_LS483311.1\|WP_000334463.1\|2256365_2258171_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LS483311.1\|WP_000370930.1\|2254426_2255284_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.00207e-59
NZ_LS483311.1\|WP_001237506.1\|2286166_2287510_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.92638e-43

>NZ_LS483311.1|WP_000648723.1|2263002_2264109_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_LS483311.1|WP_001292149.1|2262568_2263003_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_LS483311.1|WP_000927340.1|2260424_2262557_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_LS483311.1|WP_000083806.1|2258851_2260390_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALLSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_LS483311.1|WP_000334463.1|2256365_2258171_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_LS483311.1|WP_000908180.1|2255351_2256134_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_LS483311.1|WP_000370930.1|2254426_2255284_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_LS483311.1|WP_001792784.1|2253610_2253769_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_LS483311.1|WP_001792292.1|2253447_2253618_+|transposase
MSPKDTTRFETKPDHQAQFDWKESINFKTKDNQRIPLYIGVLLLYYSRFIIMHNNE
>NZ_LS483311.1|WP_001802298.1|2252826_2252931_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_LS483311.1|WP_000521495.1|2272200_2273556_-|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>NZ_LS483311.1|WP_000894032.1|2273582_2274515_-|YbbR-like-domain-containing-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQPSETKAYINVK
>NZ_LS483311.1|WP_000347896.1|2274516_2275326_-|TIGR00159-family-protein
MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLLKGILVIVIGQQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFLKRYTSNTYSKDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNISQELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK
>NZ_LS483311.1|WP_000167871.1|2275514_2276423_-|arginase
MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIEKFHSEQKGLRNYDEIIEVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNLGVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLDKGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPGTGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGETLL
>NZ_LS483311.1|WP_000958531.1|2282617_2283682_-|P-loop-NTPase
MLTVDQVKELVGEIKDPIIDVPLKETEGIVEVSIKEEKEHVSVKLAMAQLGGAPQLDLQMAVVNALKENGAKTVGIRFETLPEEKVNQFKPKEENKPKTIEGLLSQNNPVEFIAIASGKGGVGKSTVAVNLAVALAREGKKVGLVDADIYGFSVPDMMGIDEKPGIKGKEVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVKWGDIEYLILDLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVIENMSYFESKETGNKEYVFGKGGGTKLADELNTQLLGELPLEQPSWNPKDFAPSIYQSDDRLGKIYSSIAQKVIAATNK
>NZ_LS483311.1|WP_001141006.1|2283829_2285272_-|multidrug-efflux-MFS-transporter-LmrS
MAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRPLYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGLIIDQASWRVPFIIIVGIALVAFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALIISMVIIYLFIRRQFNITNALLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLSALLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMNFGRVMAGSLGTALMVTLMSFGAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRKF
>NZ_LS483311.1|WP_000636857.1|2285594_2286068_-|multidrug-efflux-transporter-SepA
MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMYDNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHLNYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
>NZ_LS483311.1|WP_001237506.1|2286166_2287510_-|MFS-transporter
MRLKSIITVIALILIMFMSAIESSIISLALPTIKQDLNAGNLISLIFTAYFIALVIANPIVGELLSRFKIIYVAIAGLLLFSIGSFMCGLSTNFTMLIISRVIQGFGSGVLMSLSQIVPKLAFEIPLRYKIMGIVGSVWGISSIIGPLLGGGILEFATWHWLFYINIPIAIIAIILVIWTFHFPEEETVAKSKFDTKGLTLFYVFIGLIMFALLNQQLLLLNFLSFILAIVVAMCLFKVEKHVSSPFLPVVEFNRSITLVFITDLLTAICLMGFNLYIPVYLQEQLGLSPLQSGLVIFPLSVAWITLNFNLHRIEAKLSRKVIYLLSFTLLLVSSIIISFGIKLPVLIAFVLILAGLSFGYIYTKDSVIVQEETSPLQMKKMMSFYGLTKNLGASIGSTIMGYLYAIQSGIFGPNLHNVLSAVAVISIGLIVLWVVFFKEQSSQSKE
>NZ_LS483311.1|WP_000047255.1|2287688_2288372_-|hemolysin-III-family-protein
MSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
>NZ_LS483311.1|WP_111724431.1|2288390_2289578_-|UDPGP-type-1-family-protein
MLDKNQLAKYKQDHLCEYEKLMSNNEKEALEEKVASLDLDFIAKLYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLSYKGPKGSFEIEGVSLFELQANQLKTLNHQSGHTIQWYIMTSDINHEETLAYFEAHSYFGYDQEAIHFFKQDNIVALSEEGKLILNQQGRIMETPNGNGGVFKSLDKTGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQPKPGESVGRLVNVDCKDTVLEYSELDPEVANQFNNANIGIHAFKLGFILNAVNRELPYHLAIKNLKQLDENFGVIEQPTLKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKEGKDSVATATEDLRRMGLI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	133717-133747	0	1.0
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	835474-835504	0	1.0
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	840908-840938	0	1.0
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	1428415-1428445	0	1.0
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	1516910-1516940	0	1.0
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	2017266-2017296	0	1.0
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	2359273-2359303	0	1.0
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	2562464-2562494	0	1.0
NZ_LS483311_7	7.1\|2015826\|26\|NZ_LS483311\|CRISPRCasFinder	2015826-2015851	26	NZ_LS483311.1	2017286-2017311	0	1.0
NZ_LS483311_7	7.1\|2015826\|26\|NZ_LS483311\|CRISPRCasFinder	2015826-2015851	26	NZ_LS483311.1	2562507-2562532	0	1.0
NZ_LS483311_1	1.1\|133762\|33\|NZ_LS483311\|CRISPRCasFinder	133762-133794	33	NZ_LS483311.1	1090916-1090948	1	0.97
NZ_LS483311_1	1.1\|133762\|33\|NZ_LS483311\|CRISPRCasFinder	133762-133794	33	NZ_LS483311.1	1428518-1428550	1	0.97
NZ_LS483311_1	1.1\|133762\|33\|NZ_LS483311\|CRISPRCasFinder	133762-133794	33	NZ_LS483311.1	1516805-1516837	1	0.97
NZ_LS483311_1	1.1\|133762\|33\|NZ_LS483311\|CRISPRCasFinder	133762-133794	33	NZ_LS483311.1	2562567-2562599	1	0.97
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	133711-133735	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	379900-379924	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	835486-835510	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	840920-840944	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1428409-1428433	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1516922-1516946	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	2017278-2017302	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	2359285-2359309	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	2562458-2562482	1	0.96
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	2562516-2562540	1	0.96
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	379906-379936	1	0.968
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	994956-994986	1	0.968
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	1730856-1730886	1	0.968
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	1731029-1731059	1	0.968
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	2562522-2562552	1	0.968
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	2643987-2644017	1	0.968
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	379808-379835	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	840840-840867	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	848163-848190	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	1091008-1091035	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	1191974-1192001	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	1275721-1275748	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	1428489-1428516	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	1516839-1516866	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	2015911-2015938	1	0.964
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	2026604-2026631	1	0.964
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	257476-257500	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	994968-994992	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1192010-1192034	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1192065-1192089	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1432843-1432867	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1730868-1730892	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1731041-1731065	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	1820819-1820843	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	2149468-2149492	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	2370133-2370157	2	0.92
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	NZ_LS483311.1	2643999-2644023	2	0.92
NZ_LS483311_3	3.1\|794414\|29\|NZ_LS483311\|CRISPRCasFinder	794414-794442	29	NZ_LS483311.1	444349-444377	2	0.931
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	1192016-1192046	2	0.935
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	1192071-1192101	2	0.935
NZ_LS483311_4	4.1\|1090963\|31\|NZ_LS483311\|CRISPRCasFinder	1090963-1090993	31	NZ_LS483311.1	2370121-2370151	2	0.935
NZ_LS483311_5	5.1\|1698413\|28\|NZ_LS483311\|CRISPRCasFinder	1698413-1698440	28	NZ_LS483311.1	974760-974787	2	0.929

1. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 133717-133747, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

2. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 835474-835504, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

3. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 840908-840938, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

4. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 1428415-1428445, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

5. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 1516910-1516940, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

6. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 2017266-2017296, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

7. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 2359273-2359303, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

8. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 2562464-2562494, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

9. spacer 7.1|2015826|26|NZ_LS483311|CRISPRCasFinder matches to position: 2017286-2017311, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

10. spacer 7.1|2015826|26|NZ_LS483311|CRISPRCasFinder matches to position: 2562507-2562532, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

11. spacer 1.1|133762|33|NZ_LS483311|CRISPRCasFinder matches to position: 1090916-1090948, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagaggaattggatttccaat	Protospacer
***************************.*****

12. spacer 1.1|133762|33|NZ_LS483311|CRISPRCasFinder matches to position: 1428518-1428550, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*****************.***************

13. spacer 1.1|133762|33|NZ_LS483311|CRISPRCasFinder matches to position: 1516805-1516837, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*****************.***************

14. spacer 1.1|133762|33|NZ_LS483311|CRISPRCasFinder matches to position: 2562567-2562599, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*****************.***************

15. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 133711-133735, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

16. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 379900-379924, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctatgttg	Protospacer
******************* *****

17. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 835486-835510, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

18. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 840920-840944, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

19. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1428409-1428433, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

20. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1516922-1516946, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

21. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 2017278-2017302, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

22. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 2359285-2359309, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

23. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 2562458-2562482, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

24. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 2562516-2562540, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

25. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 379906-379936, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcttgtagaatttcttttcgaaattctct	Protospacer
****.**************************

26. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 994956-994986, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttagaaattctct	Protospacer
******************** **********

27. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 1730856-1730886, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

28. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 1731029-1731059, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

29. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 2562522-2562552, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

30. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 2643987-2644017, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcatttcgaaattctct	Protospacer
**************** **************

31. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 379808-379835, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

32. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 840840-840867, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattatcgtaagctga	Protospacer
****************** *********

33. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 848163-848190, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

34. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 1091008-1091035, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

35. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 1191974-1192001, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

36. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 1275721-1275748, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

37. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 1428489-1428516, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

38. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 1516839-1516866, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

39. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 2015911-2015938, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

40. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 2026604-2026631, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

41. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 257476-257500, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctttgtgttg	Protospacer
*****************.* *****

42. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 994968-994992, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttagaaattctctgtgttg	Protospacer
******** ********** *****

43. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1192010-1192034, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctgtgttg	Protospacer
********.********** *****

44. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1192065-1192089, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

45. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1432843-1432867, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttatcgaaattctctgtgttg	Protospacer
****** ************ *****

46. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1730868-1730892, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctgtgttg	Protospacer
******* *********** *****

47. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1731041-1731065, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

48. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 1820819-1820843, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctccatgttg	Protospacer
******************. *****

49. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 2149468-2149492, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

50. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 2370133-2370157, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

51. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to position: 2643999-2644023, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctgtgttg	Protospacer
**** ************** *****

52. spacer 3.1|794414|29|NZ_LS483311|CRISPRCasFinder matches to position: 444349-444377, mismatch: 2, identity: 0.931

cggggccccaacatagagaaattggaacg	CRISPR spacer
cggggccccaacataaagaaattggtacg	Protospacer
***************.********* ***

53. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 1192016-1192046, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

54. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 1192071-1192101, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

55. spacer 4.1|1090963|31|NZ_LS483311|CRISPRCasFinder matches to position: 2370121-2370151, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

56. spacer 5.1|1698413|28|NZ_LS483311|CRISPRCasFinder matches to position: 974760-974787, mismatch: 2, identity: 0.929

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacactattgtaagctga	Protospacer
**************.*** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483311_2	2.1\|242257\|25\|NZ_LS483311\|CRISPRCasFinder	242257-242281	25	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15471	2	0.92
NZ_LS483311_6	6.1\|1818554\|27\|NZ_LS483311\|CRISPRCasFinder	1818554-1818580	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815
NZ_LS483311_9	9.1\|2264758\|34\|NZ_LS483311\|CRISPRCasFinder	2264758-2264791	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
NZ_LS483311_9	9.1\|2264758\|34\|NZ_LS483311\|CRISPRCasFinder	2264758-2264791	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 2.1|242257|25|NZ_LS483311|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctttttgttg	Protospacer
******* *********.*******

2. spacer 6.1|1818554|27|NZ_LS483311|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

3. spacer 9.1|2264758|34|NZ_LS483311|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

4. spacer 9.1|2264758|34|NZ_LS483311|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

313857 : 358468

Staphylococcus_phage(92.19%)

capsid,terminase,head,tail,plate,integrase,protease,holin,portal

attL 313747:313764|attR 359207:359224

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
313747:313764	attL	NA	NA	NA	NA
WP_000264743.1\|313857_315063_-\|integrase	site-specific integrase	A7YGM7	Staphylococcus_virus	6.5e-222	99.5
WP_000191466.1\|315188_315803_+	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
WP_074370993.1\|315799_315946_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.7e-15	93.8
WP_000825948.1\|316175_316760_-	hypothetical protein	A0A2I6PD77	Staphylococcus_phage	1.4e-68	100.0
WP_000525004.1\|316777_317239_-	hypothetical protein	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
WP_000333630.1\|317251_317566_-	helix-turn-helix transcriptional regulator	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
WP_001121027.1\|317717_317954_+	helix-turn-helix transcriptional regulator	A0A2I6PD81	Staphylococcus_phage	1.5e-37	100.0
WP_111724364.1\|317967_318744_+	Rha family transcriptional regulator	A0A2I6PD87	Staphylococcus_phage	9.0e-140	99.6
WP_000939498.1\|318772_318916_+	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
WP_000642492.1\|318905_319115_-	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
WP_001025401.1\|319170_319416_+	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
WP_001128433.1\|319384_319750_-	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
WP_001097552.1\|319804_320020_+	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
WP_001124159.1\|320044_320308_+	helix-turn-helix domain-containing protein	A0A2I6PDM6	Staphylococcus_phage	1.4e-44	98.9
WP_001285963.1\|320320_320482_+	DUF1270 family protein	A0A2I6PEZ9	Staphylococcus_phage	5.0e-21	100.0
WP_000174994.1\|320560_320884_+	hypothetical protein	A0A2I6PF12	Staphylococcus_phage	5.9e-53	100.0
WP_111724365.1\|320898_321261_+	hypothetical protein	A0A2I6PF03	Staphylococcus_phage	1.9e-55	99.2
WP_047216521.1\|321257_322424_+	DUF2800 domain-containing protein	A0A2D1G5B8	Staphylococcus_phage	1.2e-220	99.7
WP_000645042.1\|322449_323007_+	DUF2815 family protein	A0A2I6PF05	Staphylococcus_phage	1.8e-97	100.0
WP_111724450.1\|323075_325028_+	DNA polymerase	A0A2I6PF18	Staphylococcus_phage	0.0e+00	99.2
WP_000152769.1\|325039_325195_+	hypothetical protein	A0A2I6PDP0	Staphylococcus_phage	3.5e-19	94.1
WP_001187249.1\|325194_325380_+	DUF3113 family protein	A0A0N9BBI1	Staphylococcus_phage	6.0e-26	95.1
WP_000029381.1\|325380_325740_+	hypothetical protein	A0A0E3T8L4	Staphylococcus_phage	2.7e-59	95.8
WP_016528724.1\|325740_325989_+	hypothetical protein	Q4ZBT7	Staphylococcus_virus	3.8e-36	93.6
WP_001062709.1\|326003_326396_+	hypothetical protein	A0A2I6PE39	Staphylococcus_phage	1.6e-68	100.0
WP_000983947.1\|326392_326584_+	hypothetical protein	Q4ZBT5	Staphylococcus_virus	1.5e-27	100.0
WP_000615884.1\|326583_327015_+	hypothetical protein	Q4ZBT4	Staphylococcus_virus	1.6e-74	99.3
WP_111724366.1\|327007_327256_+	DUF1024 family protein	A0A0E3T8I2	Staphylococcus_phage	1.0e-36	93.9
WP_000185680.1\|327248_327785_+	dUTP diphosphatase	A0A1P8L6E0	Staphylococcus_phage	2.1e-95	100.0
WP_000028780.1\|327821_328064_+	hypothetical protein	NA	NA	NA	NA
WP_000195833.1\|328060_328297_+	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	1.9e-32	92.3
WP_000481976.1\|328321_328558_+	hypothetical protein	A7TWB3	Staphylococcus_phage	7.6e-34	93.6
WP_001568228.1\|328547_328937_+	hypothetical protein	M9QX07	Staphylococcus_phage	2.8e-65	100.0
WP_000595260.1\|328933_329086_+	transcriptional activator RinB	A7TWI2	Staphylococcus_phage	2.6e-19	100.0
WP_000265258.1\|329153_329354_+	DUF1514 family protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
WP_172451577.1\|329405_331853_+	hypothetical protein	R4WAL1	Staphylococcus_phage	0.0e+00	99.0
WP_015978074.1\|331955_332060_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	2.7e-12	100.0
WP_000665204.1\|332193_332484_+	VRR-NUC domain-containing protein	A0A2I6PDQ7	Staphylococcus_phage	4.9e-51	100.0
WP_001799526.1\|332464_333832_+	DEAD/DEAH box helicase	A0A2I6PDQ0	Staphylococcus_phage	6.0e-264	100.0
WP_000513701.1\|333844_334282_+	transcriptional regulator	A0A2I6PDN2	Staphylococcus_phage	6.1e-77	100.0
WP_000196700.1\|334443_334758_+	HNH endonuclease	A0A2I6PDR3	Staphylococcus_phage	8.5e-57	100.0
WP_000778930.1\|334884_335190_+\|terminase	P27 family phage terminase small subunit	A0A2I6PDN6	Staphylococcus_phage	3.7e-49	100.0
WP_000153549.1\|335179_336871_+\|terminase	terminase large subunit	A0A2I6PDP8	Staphylococcus_phage	0.0e+00	99.8
WP_001100667.1\|336875_338114_+\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	1.5e-234	99.8
WP_111724367.1\|338097_338871_+\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	3.2e-137	99.6
WP_001142734.1\|338882_340046_+\|capsid	phage major capsid protein	A0A2I6PEQ3	Staphylococcus_phage	1.2e-217	100.0
WP_000050973.1\|340114_340393_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
WP_000395499.1\|340404_340737_+	hypothetical protein	A0A2I6PEH8	Staphylococcus_phage	3.1e-57	100.0
WP_000110019.1\|340733_341135_+	hypothetical protein	R4WAN5	Staphylococcus_phage	8.1e-68	100.0
WP_001636966.1\|341135_341531_+	DUF3168 domain-containing protein	R4WAV1	Staphylococcus_phage	4.4e-66	99.2
WP_031768043.1\|341565_342207_+\|tail	tail protein	A0A2I6PEP6	Staphylococcus_phage	5.5e-119	98.1
WP_111724368.1\|342298_342754_+	Ig domain-containing protein	Q9B0D4	Staphylococcus_phage	4.5e-75	96.7
WP_000589165.1\|342811_343162_+	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
WP_000438833.1\|343203_343362_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
WP_111724369.1\|343375_349576_+\|tail	phage tail tape measure protein	U5U762	Staphylococcus_phage	0.0e+00	98.6
WP_001190533.1\|349575_350400_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
WP_000384474.1\|350408_351992_+\|tail	phage tail protein	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
WP_000179858.1\|351991_352282_+	hypothetical protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
WP_000429558.1\|352297_354208_+	minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
WP_000067131.1\|354207_355674_+\|plate	phage baseplate upper protein	A0A2I6PE72	Staphylococcus_phage	1.5e-273	100.0
WP_001166599.1\|355673_356063_+	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
WP_000916020.1\|356055_356220_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
WP_000466784.1\|356265_356565_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_000339144.1\|356700_357003_+\|holin	phage holin	B7T0L0	Staphylococcus_virus	4.1e-48	100.0
WP_111724370.1\|357013_358468_+	N-acetylmuramoyl-L-alanine amidase	A0A2I6PF47	Staphylococcus_phage	1.1e-287	99.2
359207:359224	attR	NA	NA	NA	NA

DBSCAN-SWA_2

403188 : 418719

Staphylococcus_phage(100.0%)

coat,terminase,integrase

attL 404724:404773|attR 419435:419484

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001052483.1\|403188_403380_-	hypothetical protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
WP_001261460.1\|403623_403920_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_000934799.1\|403940_404444_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
WP_000897044.1\|404495_404738_+	30S ribosomal protein S18	NA	NA	NA	NA
404724:404773	attL	NA	NA	NA	NA
WP_001797289.1\|404976_405876_-	Abi family protein	NA	NA	NA	NA
WP_111724373.1\|405877_407092_-\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	3.6e-220	96.5
WP_031903008.1\|407370_408066_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000608987.1\|408210_408423_+	hypothetical protein	NA	NA	NA	NA
WP_031903009.1\|408455_408728_+	winged helix-turn-helix domain-containing protein	Q4ZE77	Staphylococcus_phage	3.8e-37	88.4
WP_000784875.1\|408739_408886_+	hypothetical protein	NA	NA	NA	NA
WP_001058486.1\|408878_409088_+	hypothetical protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
WP_111724374.1\|409090_409390_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	5.1e-19	57.0
WP_111724375.1\|409464_411081_+	phage resistance protein	A0A1W6JPF4	Staphylococcus_phage	8.1e-244	77.2
WP_111724376.1\|411256_412060_+	bifunctional DNA primase/polymerase	Q4ZE69	Staphylococcus_phage	1.4e-148	94.8
WP_111724377.1\|412046_412319_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	1.7e-40	92.2
WP_111724378.1\|412320_412962_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	9.1e-114	95.3
WP_001288441.1\|413405_413750_+	hypothetical protein	A0A1W6JQF3	Staphylococcus_phage	1.4e-57	100.0
WP_031769358.1\|413784_414363_+	hypothetical protein	A0A1W6JQG0	Staphylococcus_phage	9.2e-81	100.0
WP_001160678.1\|414362_414539_+	hypothetical protein	A0A1W6JQJ5	Staphylococcus_phage	7.7e-23	100.0
WP_031765331.1\|414591_415119_+\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	4.3e-85	95.4
WP_111724451.1\|415250_415463_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	2.7e-30	94.3
WP_111724379.1\|415459_415975_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.1e-74	88.4
WP_111724380.1\|416192_416525_+	hypothetical protein	NA	NA	NA	NA
WP_145959531.1\|416599_417280_+	hypothetical protein	NA	NA	NA	NA
WP_063636416.1\|418164_418719_-	DUF4888 domain-containing protein	A0A1W6JQE5	Staphylococcus_phage	3.7e-71	76.1
419435:419484	attR	NA	NA	NA	NA

DBSCAN-SWA_3

772551 : 780370

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244417.1\|772551_773607_-	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	1.6e-14	29.5
WP_000149344.1\|773606_774293_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|774267_774741_-	DoxX family protein	NA	NA	NA	NA
WP_001093562.1\|775081_775522_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000604990.1\|775801_776386_-	hypothetical protein	NA	NA	NA	NA
WP_001062972.1\|776484_777198_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|777201_777621_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|777622_778291_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604514.1\|778641_779235_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_001217802.1\|779218_780370_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	1.2e-23	36.1

DBSCAN-SWA_4

792342 : 806959

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663030.1\|792342_793401_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
WP_000197271.1\|793695_794238_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429014.1\|794917_795835_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
WP_001790641.1\|795925_796027_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|796104_797610_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930014.1\|797950_798451_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001068503.1\|798470_799337_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|800137_800536_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855505.1\|800498_802604_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562498.1\|802721_803693_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000499195.1\|804092_804248_+	hypothetical protein	NA	NA	NA	NA
WP_000876318.1\|804286_805258_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_001245577.1\|805244_806201_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000616842.1\|806197_806959_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_5

890992 : 937013

Staphylococcus_phage(85.29%)

capsid,terminase,head,tail,plate,integrase,holin,portal

attL 886308:886323|attR 943746:943761

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
886308:886323	attL	NA	NA	NA	NA
WP_001006459.1\|890992_892243_+	cysteine desulfurase	Q2XUY6	environmental_halophage	8.3e-111	44.8
WP_001010508.1\|892232_892697_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_001074405.1\|892850_894248_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_031836904.1\|894315_895365_-\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	7.7e-203	99.7
WP_000143212.1\|895477_895678_+	excisionase	Q38044	Staphylococcus_phage	5.6e-30	100.0
WP_000391592.1\|895614_896520_-	hypothetical protein	A0A0F6N3N6	Staphylococcus_phage	1.4e-168	100.0
WP_031836905.1\|896551_897277_-	PH domain-containing protein	A0A0F6N4L7	Staphylococcus_phage	2.9e-124	99.6
WP_000775187.1\|897304_897979_-	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
WP_001055143.1\|897995_898328_-	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	4.1e-57	100.0
WP_000108122.1\|898590_898785_+	helix-turn-helix transcriptional regulator	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
WP_001002757.1\|898784_899552_+	phage antirepressor Ant	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
WP_000187184.1\|899552_899777_+	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
WP_001094943.1\|899816_900266_+	hypothetical protein	A1KWZ2	Staphylococcus_virus	3.0e-79	100.0
WP_000977378.1\|900279_900501_+	hypothetical protein	E0Y3P2	Staphylococcus_virus	1.5e-31	100.0
WP_000066017.1\|900493_900655_+	DUF1270 domain-containing protein	D2JGJ6	Staphylococcus_phage	4.3e-20	100.0
WP_000291090.1\|900746_901007_+	DUF1108 family protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
WP_000815401.1\|901016_901238_+	DUF2483 family protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
WP_000139720.1\|901230_901854_+	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
WP_000934385.1\|901853_902282_+	single-stranded DNA-binding protein	B2ZYV4	Staphylococcus_phage	3.9e-60	100.0
WP_031836907.1\|902295_902970_+	phi PV83 orf 19-like protein	C8CGZ0	Staphylococcus_phage	2.0e-127	98.7
WP_001081076.1\|902966_903116_+	hypothetical protein	A7TWN0	Staphylococcus_phage	2.4e-17	100.0
WP_000414755.1\|903108_903390_-	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
WP_000190253.1\|903455_904226_+	conserved phage C-terminal domain-containing protein	A0A1W6JQ00	Staphylococcus_phage	6.4e-122	100.0
WP_031836908.1\|904235_905015_+	ATP-binding protein	A0A1X9H042	Staphylococcus_phage	1.6e-144	98.8
WP_031836909.1\|905008_905167_+	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	2.2e-21	94.2
WP_001123674.1\|905179_905401_+	DUF3269 family protein	A0A1W6JQ35	Staphylococcus_phage	1.7e-35	100.0
WP_031836910.1\|905410_905818_+	RusA family crossover junction endodeoxyribonuclease	A9CR74	Staphylococcus_phage	4.2e-72	97.8
WP_031836911.1\|905817_906003_+	DUF3113 family protein	M9NSS9	Staphylococcus_phage	1.6e-26	96.7
WP_000536051.1\|906003_906366_+	hypothetical protein	B7T0B4	Staphylococcus_virus	2.1e-46	75.8
WP_000022736.1\|906365_906620_+	DUF3310 domain-containing protein	Q6R831	Staphylococcus_virus	1.3e-42	100.0
WP_060474161.1\|906619_906868_+	hypothetical protein	A0A2K9VBX5	Staphylococcus_phage	1.2e-40	100.0
WP_000693989.1\|906881_907088_+	hypothetical protein	A0A2K9VBT9	Staphylococcus_phage	3.0e-34	100.0
WP_031836912.1\|907090_907495_+	hypothetical protein	A0A0E3T8H9	Staphylococcus_phage	1.6e-71	98.5
WP_000983953.1\|907491_907686_+	hypothetical protein	A0A0E3XCV8	Staphylococcus_phage	2.5e-27	100.0
WP_000982706.1\|907682_908135_+	hypothetical protein	A0A0E3XBJ3	Staphylococcus_phage	1.4e-81	100.0
WP_031928724.1\|908131_908635_+	hypothetical protein	A0A2H4JGK2	uncultured_Caudovirales_phage	1.5e-87	95.8
WP_094321643.1\|908637_908835_+	hypothetical protein	A0A0E3TAH1	Staphylococcus_phage	6.1e-29	98.5
WP_031836882.1\|908827_909076_+	DUF1024 family protein	Q4ZBT3	Staphylococcus_virus	3.5e-37	97.6
WP_031836883.1\|909068_909602_+	dUTP pyrophosphatase	A1KX16	Staphylococcus_virus	6.0e-95	98.3
WP_031836884.1\|909662_909923_+	hypothetical protein	NA	NA	NA	NA
WP_031836885.1\|909971_910496_+	hypothetical protein	A0A0K1LKF9	Staphylococcus_phage	2.9e-86	96.6
WP_000595259.1\|910542_910716_+	transcriptional activator RinB	A0A0E3TAH3	Staphylococcus_phage	1.7e-22	100.0
WP_000286968.1\|910716_911118_+	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_000594088.1\|911470_911965_+\|terminase	terminase small subunit	A0A0N9BAX3	Staphylococcus_phage	3.4e-84	100.0
WP_001037585.1\|911957_913181_+\|terminase	PBSX family phage terminase large subunit	A0A0E3XCW6	Staphylococcus_phage	1.5e-242	100.0
WP_000177426.1\|913177_914602_+\|portal	phage portal protein	A0A0E3T9I6	Staphylococcus_phage	4.8e-272	100.0
WP_000184132.1\|914570_915521_+\|head	phage head morphogenesis protein	A0A0E3TAH5	Staphylococcus_phage	1.2e-175	99.7
WP_001019219.1\|915616_916201_+	DUF4355 domain-containing protein	A0A0N7E0U8	Staphylococcus_phage	1.3e-77	100.0
WP_000235168.1\|916217_917132_+\|capsid	phage major capsid protein	A0A0H3U2U7	Staphylococcus_phage	1.2e-170	100.0
WP_000002931.1\|917143_917287_+	hypothetical protein	A0A0E3XC49	Staphylococcus_phage	4.6e-18	100.0
WP_000177348.1\|917292_917643_+\|head,tail	phage head-tail adapter protein	A0A0E3T9I9	Staphylococcus_phage	1.9e-60	100.0
WP_000483041.1\|917654_917990_+\|head	phage head closure protein	A0A0E3TAH8	Staphylococcus_phage	8.8e-60	100.0
WP_001151323.1\|917976_918384_+	HK97 gp10 family phage protein	A0A0E3T8J0	Staphylococcus_phage	3.4e-74	100.0
WP_000270190.1\|918396_918822_+	DUF3168 domain-containing protein	A0A0E3XBP2	Staphylococcus_phage	1.2e-74	100.0
WP_000057583.1\|918822_919380_+	hypothetical protein	A0A0E3XD60	Staphylococcus_phage	1.8e-102	100.0
WP_000134337.1\|919446_919953_+	hypothetical protein	Q4ZBQ7	Staphylococcus_phage	2.7e-92	100.0
WP_000617400.1\|920132_920282_+	hypothetical protein	A0A0E3TAI0	Staphylococcus_phage	2.8e-18	100.0
WP_000379446.1\|920285_923171_+	hypothetical protein	A0A0E3T8J3	Staphylococcus_phage	0.0e+00	100.0
WP_000560181.1\|923185_924127_+\|tail	phage tail family protein	Q4ZBQ4	Staphylococcus_phage	5.2e-182	100.0
WP_029549389.1\|924137_926024_+\|tail	phage tail protein	A0A0E3XBK1	Staphylococcus_phage	0.0e+00	100.0
WP_000323240.1\|926036_927935_+	hypothetical protein	A0A0E3T9J5	Staphylococcus_phage	0.0e+00	100.0
WP_000259635.1\|927934_929758_+\|plate	BppU family phage baseplate upper protein	A0A0E3TAI3	Staphylococcus_phage	0.0e+00	100.0
WP_000705915.1\|929757_930135_+	DUF2977 domain-containing protein	A0A0E3T8J6	Staphylococcus_phage	9.6e-55	100.0
WP_001790193.1\|930138_930312_+	XkdX family protein	Q8LTH6	Staphylococcus_phage	1.7e-27	100.0
WP_000466769.1\|930352_930652_+	DUF2951 domain-containing protein	Q4ZBP8	Staphylococcus_phage	1.3e-46	100.0
WP_000524050.1\|930788_932663_+	glucosaminidase domain-containing protein	A0A0E3T9J6	Staphylococcus_phage	0.0e+00	100.0
WP_000276657.1\|932675_933914_+\|plate	BppU family phage baseplate upper protein	A0A0E3TAI6	Staphylococcus_phage	1.2e-210	100.0
WP_000398858.1\|933919_934315_+	hypothetical protein	A0A0E3T8J8	Staphylococcus_phage	1.2e-68	100.0
WP_000351119.1\|934370_934646_+\|holin	phage holin	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
WP_111724406.1\|934632_936045_+	N-acetylmuramoyl-L-alanine amidase	A0A0E3TAN9	Staphylococcus_phage	9.8e-286	99.8
WP_001065781.1\|936170_937013_+	exfoliative toxin A	A0A0E3T8P7	Staphylococcus_phage	2.3e-157	100.0
943746:943761	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1092528 : 1101001

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861572.1\|1092528_1093011_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
WP_001010413.1\|1092997_1094122_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174053.1\|1094125_1094830_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_000848350.1\|1094829_1095093_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666806.1\|1095094_1095766_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032740.1\|1095758_1097948_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
WP_000483713.1\|1097926_1099411_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000030811.1\|1099403_1100432_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
WP_000238669.1\|1100434_1101001_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_7

1330606 : 1393410

Staphylococcus_phage(50.0%)

capsid,terminase,head,tail,plate,integrase,tRNA,transposase,holin,portal

attL 1357258:1357295|attR 1392004:1392041

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000277738.1\|1330606_1332253_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.0e-289	98.4
WP_000026308.1\|1332627_1332843_-	hypothetical protein	NA	NA	NA	NA
WP_001222105.1\|1333016_1333814_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
WP_000804320.1\|1333953_1335714_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
WP_000190140.1\|1335714_1336581_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA
WP_000655671.1\|1336674_1336968_+	thiamine-binding protein	NA	NA	NA	NA
WP_001001521.1\|1337101_1338646_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_000282386.1\|1338646_1339012_+	YlbF family regulator	NA	NA	NA	NA
WP_000842277.1\|1339038_1339530_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA
WP_000073352.1\|1339832_1342451_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	8.5e-41	23.7
WP_000516264.1\|1342463_1344473_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.8e-60	30.7
WP_001077635.1\|1344478_1345021_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_111724416.1\|1345495_1346314_+	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	2.4e-26	35.1
WP_000417369.1\|1346442_1347939_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001218596.1\|1348096_1349770_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_000136950.1\|1349919_1350834_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001548613.1\|1350851_1351787_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_000561358.1\|1351801_1352035_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000448078.1\|1352256_1352733_-	glutathione peroxidase	Q70H87	Fowlpox_virus	1.2e-22	38.0
WP_000068626.1\|1352844_1354083_+	GTPase HflX	NA	NA	NA	NA
WP_000652047.1\|1354101_1355340_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000624945.1\|1355582_1355951_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001126603.1\|1355969_1357310_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
1357258:1357295	attL	NA	NA	NA	NA
WP_001836882.1\|1357449_1358577_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
WP_001183750.1\|1358629_1359325_-	Ltp family lipoprotein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
WP_000554410.1\|1359336_1359720_-	hypothetical protein	NA	NA	NA	NA
WP_000664917.1\|1359866_1360259_-	helix-turn-helix domain-containing protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
WP_001209962.1\|1360426_1360645_+	DUF739 family protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
WP_000932238.1\|1360671_1360947_+	hypothetical protein	NA	NA	NA	NA
WP_000392387.1\|1361211_1361382_+	hypothetical protein	Q4ZDZ8	Staphylococcus_virus	2.4e-21	89.3
WP_000800341.1\|1361370_1361577_-	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
WP_001157025.1\|1361637_1362321_+	phage repressor protein	A9CR56	Staphylococcus_phage	5.2e-107	85.6
WP_000072841.1\|1362419_1362596_+	DUF1270 family protein	E9LT78	Staphylococcus_phage	1.9e-13	70.4
WP_000786993.1\|1362666_1362984_+	DUF2482 family protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
WP_000786634.1\|1362973_1363240_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
WP_001004327.1\|1363244_1363781_+	host-nuclease inhibitor Gam family protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
WP_000907597.1\|1363781_1364561_+	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
WP_000702007.1\|1364587_1365136_+	hypothetical protein	A7TWM8	Staphylococcus_phage	1.1e-91	92.9
WP_000929466.1\|1365148_1366051_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
WP_000946005.1\|1366051_1366342_+	hypothetical protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
WP_000714411.1\|1366356_1366515_+	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	6.7e-18	90.4
WP_000860978.1\|1366520_1366832_+	hypothetical protein	NA	NA	NA	NA
WP_000185175.1\|1366824_1367355_+	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	1.2e-21	39.1
WP_106905708.1\|1367485_1367593_+	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	1.2e-07	87.5
WP_000835355.1\|1367589_1368054_+	hypothetical protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
WP_000653931.1\|1368330_1368819_+	hypothetical protein	R9TMH4	Paenibacillus_phage	8.7e-08	28.3
WP_000090969.1\|1368971_1369400_+	helix-turn-helix domain-containing protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
WP_000207538.1\|1369386_1370661_+\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	3.2e-195	76.2
WP_000158570.1\|1370673_1372122_+\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	3.7e-195	69.4
WP_001282613.1\|1372111_1373641_+\|capsid	minor capsid protein	Q4ZE35	Staphylococcus_virus	2.8e-108	61.3
WP_031811279.1\|1373840_1373969_+	hypothetical protein	NA	NA	NA	NA
WP_000429653.1\|1373935_1374514_+	DUF4355 domain-containing protein	Q4ZE34	Staphylococcus_virus	1.9e-09	50.8
WP_000200243.1\|1374532_1375444_+	hypothetical protein	Q4ZE33	Staphylococcus_virus	6.5e-97	59.7
WP_111724417.1\|1375521_1375995_+	Ig-like domain-containing protein	A0A2H4J9T3	uncultured_Caudovirales_phage	9.7e-12	31.6
WP_001010139.1\|1376010_1376337_+\|head,tail	phage head-tail connector protein	Q4ZE31	Staphylococcus_virus	2.1e-26	56.4
WP_001106897.1\|1376336_1376642_+	hypothetical protein	Q4ZE30	Staphylococcus_virus	6.4e-17	40.6
WP_001198140.1\|1376642_1376993_+	HK97 gp10 family phage protein	H9A0N6	Staphylococcus_phage	9.3e-36	60.0
WP_000680037.1\|1377002_1377398_+	hypothetical protein	H9A0N7	Staphylococcus_phage	1.9e-21	42.3
WP_000276225.1\|1377409_1378009_+\|tail	phage major tail protein, TP901-1 family	H9A0N8	Staphylococcus_phage	7.4e-17	47.5
WP_000256347.1\|1378070_1378415_+	hypothetical protein	A0A1J0MFH0	Staphylococcus_phage	7.7e-35	58.9
WP_001808026.1\|1378465_1378819_+	hypothetical protein	Q4ZE25	Staphylococcus_virus	1.7e-37	72.3
WP_031837017.1\|1378830_1382001_+	membrane protein	Q4ZE24	Staphylococcus_virus	1.6e-94	54.5
WP_000350618.1\|1382015_1382951_+\|tail	phage tail family protein	A0A1J0MF79	Staphylococcus_phage	2.1e-98	55.9
WP_006190231.1\|1382959_1384645_+\|tail	phage tail protein	Q4ZE19	Staphylococcus_virus	1.4e-108	46.5
WP_000700623.1\|1384662_1385676_+	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	6.5e-98	52.6
WP_006190235.1\|1385694_1387092_+\|plate	phage baseplate upper protein	A0A1J0MFK8	Staphylococcus_phage	2.6e-105	44.7
WP_000438657.1\|1387104_1387494_+\|holin	phage holin family protein	A0A1S6L1J2	Staphylococcus_phage	5.3e-16	38.2
WP_001140244.1\|1387558_1388479_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	1.0e-65	50.8
WP_001808024.1\|1388946_1389144_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	3.7e-10	48.4
WP_001808025.1\|1389364_1390300_+	Abi family protein	A0A059NT88	Lactococcus_phage	5.3e-70	44.0
WP_000477485.1\|1390747_1391164_+	hypothetical protein	NA	NA	NA	NA
WP_076692498.1\|1391590_1391815_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.6e-20	75.4
WP_001065797.1\|1392069_1393410_+\|capsid	minor capsid protein	A0A1J0MF61	Staphylococcus_phage	1.1e-140	58.9
1392004:1392041	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1669968 : 1678298

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031775221.1\|1669968_1670754_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-18	28.3
WP_000924220.1\|1670879_1671770_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
WP_001062177.1\|1671779_1673126_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000683936.1\|1673239_1674340_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_000624589.1\|1674342_1675020_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1675150_1676257_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217244.1\|1676480_1678298_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0

DBSCAN-SWA_9

1746131 : 1755174

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364542.1\|1746131_1746650_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_000594985.1\|1746671_1748945_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-63	29.1
WP_000749806.1\|1749147_1751427_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1751701_1751962_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1751980_1753120_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019174.1\|1753142_1754168_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005767.1\|1754169_1755174_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_10

1881070 : 1926785

Staphylococcus_phage(91.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049280506.1\|1881070_1887631_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	5.0e-300	96.5
WP_000836465.1\|1887956_1888268_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_001808015.1\|1888289_1890707_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
WP_001025061.1\|1890994_1892176_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_000526539.1\|1892285_1893239_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_000764419.1\|1893235_1893799_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000757543.1\|1893918_1894320_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266096.1\|1894890_1895718_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001790712.1\|1895720_1895840_-	hypothetical protein	NA	NA	NA	NA
WP_001196345.1\|1895951_1896953_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.1e-185	100.0
WP_001008549.1\|1897074_1897539_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
WP_001159035.1\|1897551_1898733_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
WP_000493888.1\|1898743_1899376_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
WP_000077352.1\|1899382_1900426_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
WP_111724426.1\|1900906_1902409_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_000221177.1\|1902931_1903246_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
WP_000989121.1\|1903245_1904538_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
WP_000163235.1\|1904555_1904951_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
WP_001032833.1\|1905245_1906100_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1906375_1906600_-	hypothetical protein	NA	NA	NA	NA
WP_000671052.1\|1906798_1907269_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
WP_001153742.1\|1907381_1907825_+	competence protein ComK	NA	NA	NA	NA
WP_001030469.1\|1907811_1908255_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_001168907.1\|1908550_1909186_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001096494.1\|1909625_1910339_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091445.1\|1910598_1910901_+	hypothetical protein	NA	NA	NA	NA
WP_001200542.1\|1911156_1911522_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000623478.1\|1911518_1911872_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
WP_000453298.1\|1912254_1913088_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
WP_000366163.1\|1913299_1914208_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
WP_000933822.1\|1914332_1915526_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000109906.1\|1915895_1917488_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
WP_016169057.1\|1917865_1918612_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.2e-143	99.2
WP_000672014.1\|1918616_1919090_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
WP_000718110.1\|1919155_1919413_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	3.6e-45	98.8
WP_000778516.1\|1919409_1920411_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.7e-187	98.2
WP_000348379.1\|1920415_1921894_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-289	100.0
WP_111724454.1\|1922052_1922508_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	4.4e-78	97.9
WP_001793444.1\|1922810_1923461_+	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	3.0e-56	99.1
WP_000070649.1\|1923541_1924537_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	4.2e-73	97.2
WP_000669028.1\|1924610_1925237_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-93	93.8
WP_000957233.1\|1925322_1926006_+	enterotoxin I	A0EX09	Staphylococcus_phage	3.8e-25	33.5
WP_000764922.1\|1926032_1926785_+	hypothetical protein	A0A097PAT7	Streptococcus_pyogenes_phage	4.4e-51	47.2

DBSCAN-SWA_11

2027264 : 2125853

117

Staphylococcus_phage(91.03%)

capsid,tail,head,terminase,integrase,protease,tRNA,holin,portal

attL 2090130:2090147|attR 2115774:2115791

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000545370.1\|2027264_2028692_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_000027918.1\|2028704_2030162_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_000170162.1\|2030163_2030466_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_000957020.1\|2030832_2032371_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000831695.1\|2032459_2033659_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_000774565.1\|2033671_2035675_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
WP_000992921.1\|2035678_2037871_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272071.1\|2037867_2038560_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|2038731_2039034_-	hypothetical protein	NA	NA	NA	NA
WP_000572878.1\|2039142_2040438_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_000827762.1\|2041298_2042465_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434933.1\|2042495_2042822_+	staphostatin A	NA	NA	NA	NA
WP_000011542.1\|2043265_2043868_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000040866.1\|2044138_2044960_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
WP_000284433.1\|2044952_2046422_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
WP_000897635.1\|2046605_2047682_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_001177828.1\|2047701_2048496_+	prephenate dehydratase	NA	NA	NA	NA
WP_001802312.1\|2048567_2048675_+	hypothetical protein	NA	NA	NA	NA
WP_000323153.1\|2048685_2050248_-	SLC13 family permease	NA	NA	NA	NA
WP_000275707.1\|2050451_2051549_-	pectate lyase	U5PWM6	Bacillus_phage	2.5e-47	34.9
WP_000149686.1\|2051920_2052481_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|2052533_2053463_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_001792184.1\|2053655_2053829_-	hypothetical protein	NA	NA	NA	NA
WP_001021209.1\|2053880_2055260_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000181322.1\|2055379_2056408_-	lactonase family protein	NA	NA	NA	NA
WP_000205106.1\|2056677_2057079_+	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
WP_000267034.1\|2057651_2057825_-	hypothetical protein	NA	NA	NA	NA
WP_001188077.1\|2058275_2059316_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713072.1\|2059372_2060215_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033971.1\|2060211_2060769_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966288.1\|2060828_2061353_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|2061473_2062037_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221651.1\|2062102_2062843_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763048.1\|2062842_2063715_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_000645728.1\|2063711_2064392_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991302.1\|2064392_2065289_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691584.1\|2065285_2065666_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681968.1\|2065924_2066101_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|2066343_2066442_-	hypothetical protein	NA	NA	NA	NA
WP_001068542.1\|2066642_2067929_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001807971.1\|2068553_2070302_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000669791.1\|2071259_2071439_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	1.4e-24	98.3
WP_001791826.1\|2071749_2072010_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000702263.1\|2072062_2072413_-	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_000727649.1\|2073097_2073547_+	chemotaxis-inhibiting protein CHIPS	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
WP_000920037.1\|2074626_2075118_-	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	3.6e-86	100.0
WP_000861038.1\|2075308_2076064_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000611512.1\|2076075_2076330_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_001791821.1\|2076381_2076489_+	hypothetical protein	NA	NA	NA	NA
WP_011447039.1\|2076541_2076718_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_000539688.1\|2076867_2077164_-	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
WP_001040261.1\|2077221_2077509_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
WP_001153681.1\|2077555_2077708_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_000582186.1\|2077697_2081483_-	hypothetical protein	C8CH32	Staphylococcus_phage	0.0e+00	99.7
WP_000567390.1\|2081498_2082983_-\|tail	phage tail family protein	A0A068A242	Staphylococcus_phage	1.5e-297	100.0
WP_000504564.1\|2082979_2087524_-\|tail	phage tail tape measure protein	A0A075M036	Staphylococcus_phage	0.0e+00	99.1
WP_158091965.1\|2087580_2087730_-	hypothetical protein	A0A068A227	Staphylococcus_phage	2.3e-20	100.0
WP_001096355.1\|2087768_2088119_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_071621395.1\|2088168_2088393_-	Ig-like domain-containing protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_000268740.1\|2088434_2089079_-\|tail	phage tail protein	G4KNQ7	Staphylococcus_phage	6.5e-120	100.0
WP_000565498.1\|2089079_2089487_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000114226.1\|2089483_2089888_-	HK97 gp10 family phage protein	G4KNQ5	Staphylococcus_phage	4.3e-69	100.0
WP_000755150.1\|2089884_2090247_-\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2090130:2090147	attL	NA	NA	NA	NA
WP_000150936.1\|2090230_2090515_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000238236.1\|2090504_2090789_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
WP_061823656.1\|2090808_2091954_-\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	3.6e-214	99.7
WP_000642728.1\|2091977_2092715_-\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
WP_000025274.1\|2092698_2093886_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_000625088.1\|2093901_2095563_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000402904.1\|2095559_2095904_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000988330.1\|2096034_2096334_-	HNH endonuclease	G4KNP8	Staphylococcus_phage	4.6e-52	100.0
WP_000590122.1\|2096565_2096982_-	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_000265043.1\|2097009_2097210_-	DUF1514 family protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
WP_000595267.1\|2098017_2098167_-	hypothetical protein	R9QSU6	Staphylococcus_phage	1.8e-17	100.0
WP_000195810.1\|2098163_2098370_-	DUF1381 domain-containing protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
WP_000185669.1\|2098406_2098943_-	dUTP diphosphatase	R4IG63	Staphylococcus_phage	9.4e-96	100.0
WP_001065083.1\|2098935_2099184_-	DUF1024 family protein	A0A2K9VBU0	Staphylococcus_phage	3.1e-38	100.0
WP_001105621.1\|2099176_2099461_-	hypothetical protein	E9LT36	Staphylococcus_phage	2.7e-46	100.0
WP_000982708.1\|2099457_2099907_-	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
WP_000983954.1\|2099903_2100098_-	hypothetical protein	A0A2I6PE33	Staphylococcus_phage	2.5e-27	100.0
WP_000693615.1\|2100094_2100481_-	hypothetical protein	I1W655	Staphylococcus_phage	4.1e-69	100.0
WP_000131377.1\|2100494_2100737_-	hypothetical protein	R9QT89	Staphylococcus_phage	3.0e-41	100.0
WP_000101270.1\|2100740_2101109_-	hypothetical protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
WP_000401964.1\|2101121_2101526_-	RusA family crossover junction endodeoxyribonuclease	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
WP_000338528.1\|2101534_2101753_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000148329.1\|2101759_2102653_-	DnaD domain-containing protein	A0A0E3TAG7	Staphylococcus_phage	1.1e-141	100.0
WP_000934769.1\|2102682_2103153_-	single-stranded DNA-binding protein	A0A0E3T9H6	Staphylococcus_phage	5.7e-81	100.0
WP_071621397.1\|2103153_2103771_-	MBL fold metallo-hydrolase	S4SWA4	Staphylococcus_phage	9.1e-87	100.0
WP_000138475.1\|2103851_2104772_-	recombinase RecT	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
WP_000700555.1\|2104773_2106717_-	AAA family ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
WP_001205732.1\|2106725_2106989_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000291510.1\|2106997_2107258_-	DUF1108 family protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
WP_000165371.1\|2107262_2107565_-	DUF2482 family protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
WP_000048129.1\|2107659_2107821_-	DUF1270 family protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
WP_001120201.1\|2107817_2108141_-	DUF771 domain-containing protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
WP_000762521.1\|2108195_2108576_+	DUF2513 domain-containing protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
WP_001148862.1\|2108562_2108760_-	hypothetical protein	O80075	Staphylococcus_phage	3.5e-24	87.7
WP_001148605.1\|2108775_2109528_-	phage antirepressor KilAC domain-containing protein	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
WP_000128907.1\|2109578_2109908_+	hypothetical protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
WP_001025404.1\|2109896_2110112_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
WP_000854072.1\|2110127_2110391_-	helix-turn-helix transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
WP_001801500.1\|2110387_2110561_-	hypothetical protein	NA	NA	NA	NA
WP_001031454.1\|2110523_2111237_+	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
WP_000759682.1\|2111252_2112185_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
WP_000591749.1\|2112190_2112532_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
WP_000705248.1\|2112735_2112918_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
WP_000825947.1\|2113017_2113482_+	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
WP_000857198.1\|2113540_2114578_+\|integrase	site-specific integrase	A0A1X9H022	Staphylococcus_phage	2.6e-179	100.0
WP_000595394.1\|2115696_2116713_-	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	8.7e-26	30.6
2115774:2115791	attR	NA	NA	NA	NA
WP_031588767.1\|2116734_2117790_-	bi-component leukocidin LukGH subunit H	A0A2I6PDF3	Staphylococcus_phage	1.3e-35	32.1
WP_000206640.1\|2118224_2119448_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_000812008.1\|2119819_2120665_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000825512.1\|2120726_2121638_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001045078.1\|2121798_2123106_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000022887.1\|2123959_2124403_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_072419900.1\|2124508_2124946_-	hypothetical protein	NA	NA	NA	NA
WP_001293059.1\|2125262_2125853_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.2e-96	94.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483311

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection