CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483342	Streptococcus agalactiae strain NCTC11930 chromosome 1	2 crisprs	WYL,DEDDh,csm6,csn2,cas2,cas1,cas9,DinG,cas4,cas7,cas8c,cas5,cas3,csa3	0	19	7	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483342_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483342_1

1138956-1140047

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR

16 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_LS483342_1

>merge|NZ_LS483342|1|1138956-1140047|CRT,CRISPRCasFinder,PILER-CR
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAACACATATCCTTTTGTTAGGTCAAAAGAAGATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATGGAGTGTTAGAAGAATTAAAAAGAAGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCAACATGCTTACTTAGAGCATCTCGCTGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCACTTGTGAAATATCTTCAGAAGATAGAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAACTCCAGCTTCTCCTACCAAGATAGGATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAACATCCCAATCCATTGCTGTATAACCTTCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGAACCTCATGAAAGCGTGGAAGAATGACAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACAGAGTTCCGATTGAAGTAAGCAAATCAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCTTGCGTGCCCTTACTTCTTCTTGAGTTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACCGCCATTAGGGTTAGGTACGACATGTTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTTAACTTATATCGTTGATGAAGTATCAACGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCAGCCATTGTCTTAATCAAATCGTTAACAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGTCAATTGCTTGGCTGTCTGACAGACATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTTTGTGGATAAAGCGGACTTAATACAAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGACGTGCATCAATTGAAGATAGAATAGAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTGCAAACTGATATCGCAAACGCTCAAAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_LS483342|1|1|1138956-1140047|CRT
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAAC	ACATATCCTTTTGTTAGGTCAAAAGAAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATGGAGTGTTAGAAGAATTAAAAAGAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAACATGCTTACTTAGAGCATCTCGCTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCACTTGTGAAATATCTTCAGAAGATAGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACTCCAGCTTCTCCTACCAAGATAGGATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACATCCCAATCCATTGCTGTATAACCTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAACCTCATGAAAGCGTGGAAGAATGACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAGAGTTCCGATTGAAGTAAGCAAATCAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCTTGCGTGCCCTTACTTCTTCTTGAGTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACCGCCATTAGGGTTAGGTACGACATGTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTAACTTATATCGTTGATGAAGTATCAAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAGCCATTGTCTTAATCAAATCGTTAACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTCAATTGCTTGGCTGTCTGACAGACATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTTGTGGATAAAGCGGACTTAATACAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCATCAATTGAAGATAGAATAGAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTGCAAACTGATATCGCAAACGCTCAAAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_LS483342|1|1|1139022-1140047|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATGGAGTGTTAGAAGAATTAAAAAGAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAACATGCTTACTTAGAGCATCTCGCTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCACTTGTGAAATATCTTCAGAAGATAGAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACTCCAGCTTCTCCTACCAAGATAGGATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACATCCCAATCCATTGCTGTATAACCTTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAACCTCATGAAAGCGTGGAAGAATGACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAGAGTTCCGATTGAAGTAAGCAAATCAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCTTGCGTGCCCTTACTTCTTCTTGAGTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACCGCCATTAGGGTTAGGTACGACATGTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTAACTTATATCGTTGATGAAGTATCAAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAGCCATTGTCTTAATCAAATCGTTAACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTCAATTGCTTGGCTGTCTGACAGACATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTTGTGGATAAAGCGGACTTAATACAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCATCAATTGAAGATAGAATAGAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTGCAAACTGATATCGCAAACGCTCAAAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_LS483342|1|1|1139352-1140047|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAACCTCATGAAAGCGTGGAAGAATGACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAGAGTTCCGATTGAAGTAAGCAAATCAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCTTGCGTGCCCTTACTTCTTCTTGAGTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACCGCCATTAGGGTTAGGTACGACATGTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTTAACTTATATCGTTGATGAAGTATCAAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAGCCATTGTCTTAATCAAATCGTTAACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTCAATTGCTTGGCTGTCTGACAGACATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTTGTGGATAAAGCGGACTTAATACAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGTGCATCAATTGAAGATAGAATAGAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTGCAAACTGATATCGCAAACGCTCAAAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483342.1\|WP_000323544.1\|1147154_1147925_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_LS483342.1\|WP_000065321.1\|1127421_1128525_-\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_LS483342.1\|WP_000180007.1\|1132375_1133035_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_LS483342.1\|WP_000159234.1\|1150293_1150665_-\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_LS483342.1\|WP_000590706.1\|1140147_1140813_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_LS483342.1\|WP_001241816.1\|1149888_1150269_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_LS483342.1\|WP_000122194.1\|1140799_1141141_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_LS483342.1\|WP_000665410.1\|1131468_1131903_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_LS483342.1\|WP_000929489.1\|1141137_1142007_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_LS483342.1\|WP_000438314.1\|1137981_1138398_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_LS483342.1\|WP_001040087.1\|1142008_1146121_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_LS483342.1\|WP_000146566.1\|1126662_1127301_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_LS483342.1\|WP_000168898.1\|1128524_1131317_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NZ_LS483342.1\|WP_000523795.1\|1147925_1148663_-\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_LS483342.1\|WP_000914664.1\|1148666_1149797_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_LS483342.1\|WP_029662154.1\|1133134_1135753_-\|pneumococcal-type-histidine-triad-protein	unknown	unknown	gnl\|CDD\|380193
NZ_LS483342.1\|WP_001019133.1\|1136013_1137846_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_LS483342.1\|WP_000621142.1\|1131902_1132367_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LS483342.1\|WP_000653357.1\|1146508_1147165_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_LS483342.1\|WP_001056394.1\|1125340_1125952_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475

Protein	Function_ID	Function_description	E-value
NZ_LS483342.1\|WP_000323544.1\|1147154_1147925_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_LS483342.1\|WP_000065321.1\|1127421_1128525_-\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
NZ_LS483342.1\|WP_000180007.1\|1132375_1133035_-\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33
NZ_LS483342.1\|WP_000159234.1\|1150293_1150665_-\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_LS483342.1\|WP_000590706.1\|1140147_1140813_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_LS483342.1\|WP_001241816.1\|1149888_1150269_-\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_LS483342.1\|WP_000122194.1\|1140799_1141141_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_LS483342.1\|WP_000665410.1\|1131468_1131903_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_LS483342.1\|WP_000929489.1\|1141137_1142007_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_LS483342.1\|WP_000438314.1\|1137981_1138398_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_LS483342.1\|WP_001040087.1\|1142008_1146121_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_LS483342.1\|WP_000146566.1\|1126662_1127301_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	9.50556e-71
NZ_LS483342.1\|WP_000168898.1\|1128524_1131317_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_LS483342.1\|WP_000523795.1\|1147925_1148663_-\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_LS483342.1\|WP_000914664.1\|1148666_1149797_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_LS483342.1\|WP_029662154.1\|1133134_1135753_-\|pneumococcal-type-histidine-triad-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	1.10721e-21
NZ_LS483342.1\|WP_001019133.1\|1136013_1137846_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_LS483342.1\|WP_000621142.1\|1131902_1132367_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
NZ_LS483342.1\|WP_000653357.1\|1146508_1147165_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_LS483342.1\|WP_001056394.1\|1125340_1125952_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31

>NZ_LS483342.1|WP_000438314.1|1137981_1138398_-|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_LS483342.1|WP_001019133.1|1136013_1137846_-|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_LS483342.1|WP_029662154.1|1133134_1135753_-|pneumococcal-type-histidine-triad-protein
MIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANTKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NZ_LS483342.1|WP_000180007.1|1132375_1133035_-|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_LS483342.1|WP_000621142.1|1131902_1132367_-|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_LS483342.1|WP_000665410.1|1131468_1131903_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_LS483342.1|WP_000168898.1|1128524_1131317_-|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKGSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>NZ_LS483342.1|WP_000065321.1|1127421_1128525_-|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>NZ_LS483342.1|WP_000146566.1|1126662_1127301_+|CatB-related-O-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYGVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_LS483342.1|WP_001056394.1|1125340_1125952_-|TVP38/TMEM64-family-protein
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN
>NZ_LS483342.1|WP_000590706.1|1140147_1140813_-|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_LS483342.1|WP_000122194.1|1140799_1141141_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_LS483342.1|WP_000929489.1|1141137_1142007_-|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_LS483342.1|WP_001040087.1|1142008_1146121_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_LS483342.1|WP_000653357.1|1146508_1147165_-|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_LS483342.1|WP_000323544.1|1147154_1147925_-|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_LS483342.1|WP_000523795.1|1147925_1148663_-|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_LS483342.1|WP_000914664.1|1148666_1149797_-|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_LS483342.1|WP_001241816.1|1149888_1150269_-|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_LS483342.1|WP_000159234.1|1150293_1150665_-|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE

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Crispr_ID: NZ_LS483342_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483342_2

1540907-1541599

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	CRT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	PILER-CR
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	CRISPRCasFinder

10 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_LS483342_2

>merge|NZ_LS483342|2|1540907-1541599|CRT,PILER-CR,CRISPRCasFinder
AGTTGAAACTACACACCCGCAAAGGGGCGATGATAATGAATTAATAAAAAAATAATCATTATTAATTTCAATCCACGCACCCGCAAAGGGTGCGACGCGTTGATATGAAAGGAAATTATAGAGATATGATATTTCAATCCACGCACCCGCAAAGGGTGCGACAAAACGGATGGTTGTATATTGCAGGCTATCAGCTAATTTCAATCCACGCACCCGCAAAGGGTGCGACTGATCTAATTAGTGATATGCTACGTCTTTACGACATTTCAATCCACGCACCCGCAAAGGGTGCGACTAATTGAAGATGCAAAAATTTTAAACATACCACCTATTTCAATCCACGCACCCGCAAAGGGTGCGACTTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCTATTTCAATCCACGCACCCGCAAAGGGTGCGACATAATTATGGTAGTCTTATTTTTAATATAAAATAATTTCAATCCACGCACCCGCAAAGGGTGCGACGTTTGCTCTGCGTCAAGCGTAACAGCGAGACTTAATTTCAATCCACGCACCCGCAAAGGGTGCGACGTCTTTTCAGACAGAACATAAATGGAAATATAGTAATTTCAATCCACGCACCCGCAAAGGGTGCGACTTTTCCGTTTTTTCATAGCAATATGTGGGACTATATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_LS483342|2|2|1540907-1541599|CRT
AGTTGAAACTACACACCCGCAAAGGGGCGATG	ATAATGAATTAATAAAAAAATAATCATTATTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TGATCTAATTAGTGATATGCTACGTCTTTACGAC
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TAATTGAAGATGCAAAAATTTTAAACATACCACCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	ATAATTATGGTAGTCTTATTTTTAATATAAAATA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTTTGCTCTGCGTCAAGCGTAACAGCGAGACTTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTCTTTTCAGACAGAACATAAATGGAAATATAGTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTTCCGTTTTTTCATAGCAATATGTGGGACTAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_LS483342|2|2|1540971-1541599|PILER-CR
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TGATCTAATTAGTGATATGCTACGTCTTTACGAC
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TAATTGAAGATGCAAAAATTTTAAACATACCACCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	ATAATTATGGTAGTCTTATTTTTAATATAAAATA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTTTGCTCTGCGTCAAGCGTAACAGCGAGACTTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTCTTTTCAGACAGAACATAAATGGAAATATAGTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTTCCGTTTTTTCATAGCAATATGTGGGACTAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC

>NZ_LS483342|2|2|1540971-1541599|CRISPRCasFinder
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GCGTTGATATGAAAGGAAATTATAGAGATATGAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	AAAACGGATGGTTGTATATTGCAGGCTATCAGCTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TGATCTAATTAGTGATATGCTACGTCTTTACGAC
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TAATTGAAGATGCAAAAATTTTAAACATACCACCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTGGCTGTTTGAGTAGCTCGTTGACTTTTGCCT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	ATAATTATGGTAGTCTTATTTTTAATATAAAATA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTTTGCTCTGCGTCAAGCGTAACAGCGAGACTTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	GTCTTTTCAGACAGAACATAAATGGAAATATAGTA
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC	TTTTCCGTTTTTTCATAGCAATATGTGGGACTAT
ATTTCAATCCACGCACCCGCAAAGGGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483342.1\|WP_000988351.1\|1547353_1549777_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_LS483342.1\|WP_000989528.1\|1541745_1542039_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_LS483342.1\|WP_000985604.1\|1535253_1535958_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NZ_LS483342.1\|WP_000345444.1\|1544597_1546493_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
NZ_LS483342.1\|WP_000492962.1\|1538747_1539650_-\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NZ_LS483342.1\|WP_000262368.1\|1543071_1543743_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NZ_LS483342.1\|WP_032455446.1\|1546492_1547221_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_LS483342.1\|WP_000049316.1\|1539810_1540770_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_LS483342.1\|WP_000021305.1\|1537522_1538587_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_LS483342.1\|WP_000384889.1\|1534951_1535242_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483342.1\|WP_000735207.1\|1542049_1543075_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_LS483342.1\|WP_000997618.1\|1554458_1555151_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483342.1\|WP_000934859.1\|1550788_1551568_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483342.1\|WP_000137511.1\|1531997_1533332_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277323
NZ_LS483342.1\|WP_000790647.1\|1533406_1534480_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226011
NZ_LS483342.1\|WP_000592256.1\|1535923_1536373_+\|thiol-reductase-thioredoxin	unknown	unknown	gnl\|CDD\|273542
NZ_LS483342.1\|WP_000889456.1\|1543744_1544593_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NZ_LS483342.1\|WP_000161892.1\|1534469_1534955_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|173914
NZ_LS483342.1\|WP_000032189.1\|1551785_1554437_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_LS483342.1\|WP_000748011.1\|1536417_1537410_-\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|225304

Protein	Function_ID	Function_description	E-value
NZ_LS483342.1\|WP_000988351.1\|1547353_1549777_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.11439e-155
NZ_LS483342.1\|WP_000989528.1\|1541745_1542039_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.98207e-31
NZ_LS483342.1\|WP_000985604.1\|1535253_1535958_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	3.89521e-82
NZ_LS483342.1\|WP_000345444.1\|1544597_1546493_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_LS483342.1\|WP_000492962.1\|1538747_1539650_-\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.87179e-70
NZ_LS483342.1\|WP_000262368.1\|1543071_1543743_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.32935e-29
NZ_LS483342.1\|WP_032455446.1\|1546492_1547221_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.52076e-112
NZ_LS483342.1\|WP_000049316.1\|1539810_1540770_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.72879e-57
NZ_LS483342.1\|WP_000021305.1\|1537522_1538587_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.01714e-19
NZ_LS483342.1\|WP_000889456.1\|1543744_1544593_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	5.09634e-156
NZ_LS483342.1\|WP_000735207.1\|1542049_1543075_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	5.95494e-174
NZ_LS483342.1\|WP_000137511.1\|1531997_1533332_-\|metallophosphoesterase	gnl\|CDD\|277323	cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.10499e-59
NZ_LS483342.1\|WP_000790647.1\|1533406_1534480_-\|PDZ-domain-containing-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	1.28781e-135
NZ_LS483342.1\|WP_000592256.1\|1535923_1536373_+\|thiol-reductase-thioredoxin	gnl\|CDD\|273542	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.	2.96539e-08
NZ_LS483342.1\|WP_000161892.1\|1534469_1534955_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|173914	cd02163, PPAT, Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.	9.07742e-77
NZ_LS483342.1\|WP_000032189.1\|1551785_1554437_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_LS483342.1\|WP_000748011.1\|1536417_1537410_-\|aspartate--ammonia-ligase	gnl\|CDD\|225304	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism].	0

>NZ_LS483342.1|WP_000049316.1|1539810_1540770_-|Gfo/Idh/MocA-family-oxidoreductase
MSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTAYPNIDHVTWFRELELGGGTVHFMAPYALSYLQYLFDATITHASGTATFPKGQSDSQSKLLLQLSNGVLVDIFLTTRLNLPHEMIIYGTEGRLIIPHFWKTTHAKLVRNDTSAQTIQVDMVSDFEKEAYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGK
>NZ_LS483342.1|WP_000492962.1|1538747_1539650_-|magnesium-transporter-CorA-family-protein
MFSSDFGFEIINVDDLSLQEERFLPSELLAYARDENESSFVRDIEGHLTLVYQLLDTQGHVDDVRHVPRVIPVTLFLKEDGLFVLANHKNINLVKKALNRVEKVDSPKHLLLSLVTAFSKQYFDVLDTISEERDKLINDLRKRPNKSNLARLANLQSGTVHLMMGTKQNFEMLTDLQNIEQDKENTRNEKMQLQDAIIEARQLSNMCSLNSQVFQELSSSYNNVLSNNLNDNVTTLTIISIGISIIAMVTSFYGMNVKLPFDSVDAVWVLIILITTIITIMLSIVMYIYVHKEDNHPKHK
>NZ_LS483342.1|WP_000021305.1|1537522_1538587_-|MmcQ/YjbR-family-DNA-binding-protein
MSIESDFFRKKRFIFSSLEEFGFIKSDQEYIYCQTFMDNDFKAIITISLDGKIAGKVIDSALEEEYLPLRAANYNGSFVGEVRSAYMAILGDISDSCCKDLLFTKDQSNRLAEKIAKTFEDSVDYPFAKHPQYASYRVSGKWYALLFPLKMGKLENVPAQLSEDEVEVLNIKVNPQDMEILLQKEGIYPSYHMSKKTWVSIVLDNTLSDIEIFKLVSDSRKLVSPNKKSNSEPEFWIIPANPKFYDIDKEFAEHQLIDWTQKGKIAVGDYVFIYITAPIRALRYVCQVIERDLKTSTYLGARDVKAYMRLKLIRQFEDSTYPVAFLAEHGVKTVRGPRRMTKELRQVMAKTILE
>NZ_LS483342.1|WP_000748011.1|1536417_1537410_-|aspartate--ammonia-ligase
MKKSFIHQQQEISFVKNTFTQYLIDKLEIVEVQGPILSQVGDGMQDNLSGIEHPVSVKVLNIPEAEFEVVHSLAKWKRHTLARFGFNEGEGLFVHMKALRPDEDSLDPTHSVYVDQWDWEKVIPDGRRNLDYLKETVEKIYKAIRLTELAVEARFDIESILPKRITFIHTEELVEKYPDLSPKERENAIAKEYGAVFLIGIGGELADGKPHDGRAPDYDDWTTPSENGFKGLNGDILVWNEQLGTAFELSSMGIRVDEDALKRQVVLTGDEDRLEFEWHKTLLRGFFPLTIGGGIGQSRLAMFLLRKKHIGEVQSSVWPKEVRDTFENIL
>NZ_LS483342.1|WP_000592256.1|1535923_1536373_+|thiol-reductase-thioredoxin
MIKKLLLSLIAILCLTTLKSNLSSADTMTISPQQYQHMITNSDLIAITDKALVSKSQQSEATIFIGRPTCQYCRAFLPKLLKSQATLHSKIYYLDSQKYKGERLKSFFKKHHITTVPNLAHYQRGKMTKYLVQGSQATPQQIQTFLSQK
>NZ_LS483342.1|WP_000985604.1|1535253_1535958_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MAIKLNNNFLIIMGTSFLLLLAYHIKKEGKEIPSSLFVISNFFDNSTLFFVIIVVMRVVAGTFGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQAVLVEKDRRAQVVIQENIAMTKSPEQFQLLKMEANRALEQLTGQFDLVLLDPPYAKEEIVKQIQIMDSKGLLGDDIMIVCETDKSVDLPEEIASFGIWKQKIYGISKVTVYVR
>NZ_LS483342.1|WP_000384889.1|1534951_1535242_-|hypothetical-protein
MDYKLVMIILILVILIYLLLRLHYLEELLKHYHFKNDEGVCSLSRTKNPLYLLMAMITFLPNLINWIANGFEAIDIVRLIPVVVFLWLYYCGDDDE
>NZ_LS483342.1|WP_000161892.1|1534469_1534955_-|pantetheine-phosphate-adenylyltransferase
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIHFKASVKPFVPKSVVREVEKMSEE
>NZ_LS483342.1|WP_000790647.1|1533406_1534480_-|PDZ-domain-containing-protein
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATPAQVFYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESVYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHLADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEGVGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKNAKKGKTKVQTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK
>NZ_LS483342.1|WP_000137511.1|1531997_1533332_-|metallophosphoesterase
MTELIRILHLNDLHSHFENFPKVKRFFHDNQAQPIETISLDLGDNIDKSHPLTEASSGKANIQLMNELGIELATIGNNEGVGLSKKDLDQVYKDSDFTVIVGNLKDNTIEPSWAKPYIIYETQQGTKLAFLAYTFPYYKTYEPHGWMIEDPIDCLKCHLQINEIKEANCRILMSHLGIRFDTRIAQEFSEIDLIIGAHTHHLFEEGELINGTYLAAAGKYGRFVGSIDITFDNHTLKDILISTCDTKQLTGYPSDSDWAKKIESEGKEQLRKESLISFPAPLSLEESCQLVMDAMLFYAGADVAIINSGLIVQPFRKDFSRKNLHESLPHQMRLAKLTVSSQELLEIYETIYQQGQFLAQQKIHGMGFRGKYFGDVLHSGFDYKNGKIVYNEKDIDAKEEVILVIVDQYYFASYFECLKTKKVDLLFPELLRDVVADYLINMTL
>NZ_LS483342.1|WP_000989528.1|1541745_1542039_-|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTKTVAGRRRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVEIKNELLTIIDQKSDSIRFYLLGKNWQNRVETIGKNDSYDPDIGVLLL
>NZ_LS483342.1|WP_000735207.1|1542049_1543075_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYLTQDNFYLTRERDNIVIKQEGKIVHRFPYRIIDGIICFSYLGASPSLIELCTEKQINLSFHTPQGRFCGRFVGSTNGNVLLRREHYRLADHALSIEYAKRFILAKVSNSRKYLIRFKRDHRDRIDIQLFEDINTELMWALELIQSAPDKETLLGIEGQAANQYFRAFNELVLTDKDTFRFNGRTRRPPQDCINALMSLGYSLLTYECQSALEAVGLDSYVGFYHTDRPGRASLALDLVEEFRSYIVDRFVFSLVNKGQLNKRHFDIKENSSVILTEKGRTIFIESWQKRKHTVVEHPFTKEKVKLMLLPYVQAQLLSKAIRGDLESYPPFLI
>NZ_LS483342.1|WP_000262368.1|1543071_1543743_-|CRISPR-associated-protein-Cas4
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQILHTKADNPYIKGKRKDFLVSRAMHVSSKILGLYGILDVVEFYKDENGFSLKGKRGKWLPCIVEYKRGKPKKDRRDIVQLVAQTICLEETFGCYIEKGCLYYHSVNQKKTIEITEELRQEVLDLAEQMHFYYDNKIIGKAEYFKNCPLCSLVDICKPRLSKKTRNVDNYIRQSLVNEDSL
>NZ_LS483342.1|WP_000889456.1|1543744_1544593_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLEHKIDFIVTFEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRNRLQDMGKPIFVQANERIEDDFRSLEKRFSQHFTAKTPDKEIEEKANALWFDVRAFGQVFTYLKKSIGVRGPISISMAKSLEPIVISSLQITRSTNGMEAKNNSGRSSDTMGTKHFVDYGIYVLKGSINAYFAEKTGFSQEDAEAIKEVLVSLFENDASSARPEGSMRVREVFWFTHSSKLGNVSSARVFDLLEYNQSIEEKSTYDAYQIHLNQEKLAKYEAKGLTVKILEGL
>NZ_LS483342.1|WP_000345444.1|1544597_1546493_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKTYEKAELADLVDHQKRNNEPVLLPIYHTSLKSNGKNIISVKLDKDGQFHKAEFMTDKQMIIFPVTADSVARSGSNPAPHPLVDKFAYYSAEMGQSQYDSFHKQLNNWIDYCEEGDVKRFLTIVQQFILKPEFLTLILDSLIGPDYQNNQLKVTFCDATGKEKLIDLSACFLEFSIDQFQGFKNESVSTFKTLHQSYISFVEANRENLGICNISGREEQLTDKHRGLMGNAKIISVSNKREAYKGRFREREDVFSVGYETSEKIHLMIKYLLENKNTSTWLGSSQYLINWFSDDLTNDSRLDIVSPIFDDGLEEDDDEDMPSVIALATEENKRIGKSFIKGQKLFANDATYYIAILNKTSNGRIALKYFRQIQASQLLTNLDKWQEKYSWESRSKSGKSRLRTPAFHDILNVSYGVDRDRFLELDNDNFKSDQVQKLVTSLIDGKPMPQSIVKKLGNNVKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLNHTNQNRSYLFGRLLAIFELIETLRYSLEGNGSDRITNAERYWTAYTGQPTKLMMLLENKIKPYEETLKLNRRGSWKKLEKEKEEILELLNPLLETETMEKPLDYRFIFGYYAEKNYYYPKQNTEVTESEE
>NZ_LS483342.1|WP_032455446.1|1546492_1547221_-|type-I-C-CRISPR-associated-protein-Cas5
MYRSRDFYVRVSGQRALFTNPATKGGSERASYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLHDYSADLSYVSYLSDVVYLIKFHFIWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRESVGLVDDISQEEYEAAVSYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMENGVITFKTQSDCDIVNTLSSYAFKVPGEIKSVNDEYMEYDAMEKGEN
>NZ_LS483342.1|WP_000988351.1|1547353_1549777_-|CRISPR-associated-helicase/endonuclease-Cas3
MMTKETLAHYQKKIEQESEKKQSLDEHLWHVACFSRQEASIIGQGDVLFLISLYHDLGKADRAFQDKLLNNPNRHVDHSYAGAKYLCSIIGPHLKSRGVDKDERMTFNEMVGYVISAHHGMYDFCYCSDDAEYYSFNKFKNRINRDLDDYHYHEDIKGYAIKLEEKLCDYGYKDLRELIDKAFDNYQQAMSSLNWQDNSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLEISPMDKTERSSLKHSYLAAIEQKYASFGRPNNQLNTIRTEIAERVKERGKRDSKGIYRLDLPTGAGKTNLSMRYAFHQLVHQDKSRFFYITPFLSVLEQNASEIRKVTGDLGVLEHHSNMVKQANEDDDKDSLLSAYLIDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQSLPIEVTTLFNLTMNFLNKVMDTTIVLCTATQPAYDSSEIDHRICYGGNLGELAEIVELTIEEKQIFSRTELRKFDDSDQKVYLTDVINLILGEENSVLAIFNTKKTVHNCYTMLKDMTDRPIYQLSTNMCAQHRLDLVAKIKTELQNNTPIICISTQLIEAGVDVDFHRVIRSYSGIDSIVQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKAKKEATESILYKIGSPINISTLNRDFFEYYYANNQGLMDYPLEDNISIYDYLSLNTYQTANKKFKGKLKQAFKTAGAKMNLINNDMIGILVPYGDAEKKLAYLEELGTSHFLSAEDYQTIKSLLKELQPFTVNVRENDPLLEATKSYLNGQILVLTSEYYDTERGVKYDSASFYF
>NZ_LS483342.1|WP_000934859.1|1550788_1551568_+|hypothetical-protein
MLNSDFIISKSLANYIHHRRLEVGVSSTDLAEISNMSKSDWESFEKNGGAIPLKSKDIILDLLFLERFPKEKECDFIDKLFEEAKENKLWPEKIYQTMGLTPALSFIAGCEILSDDINNDLEELSKLPKESHLGQLDTSLLLSLLPQQFITKYDYEFVYKLSKVLAQYTSRNKVGSSYTAHNVIEEICLYLIAKESILYFESLDENSHLQLKELLDYNDEWPFDIFDDMDSYTFLYTDIYIEEDSPYHFKNWFVPQFYL
>NZ_LS483342.1|WP_000032189.1|1551785_1554437_-|valine--tRNA-ligase
MSKELSPKYNPAEVEAGRYQTWLDQDVFKPSGDAEAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQGISRYDLGREKFLDKVWEWKDEYAATIKSQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYNRGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALEVATTRPETMFGDVAVAVNPEDPRYKDLIGQNVILPIINKPIPIVADEHADPEFGTGVVKITPAHDPNDFAVGQRHNLPQVNVMNDDGTMNELADEFNGMDRFEARKAVVAKLESLGNLVKIEKMTHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAIANQDTEDKVEFYPPRFNDTFMSWMENVHDWVISRQLWWGHQIPAWYNVNGEMYVGEDAPEGDGWTQDEDVLDTWFSSALWPFSTMGWPDTEAADFKRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFSNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLDQARENVEKVVNSQVGNVTDRWILHNLNETVGKITENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEDEKVVTRSVLLYTLDQILRLLHPIMPFVTEEIFGQYAEGSIVLASYPQVNATFENQTAHKGVESLKDLIRSVRNSRAEVNVAPSKPITILVKTSDSELESFFKDNSNYIKRFTNPETLEISSAIATPELAMSSVITGAEIFLPLADLLNVEEELARLEKELAKWQKELDMVGKKLSNERFVANAKPEVVQKEKDKQADYQAKYDATQERIVEMQKLVK
>NZ_LS483342.1|WP_000997618.1|1554458_1555151_-|hypothetical-protein
MNDFFNWLITLYNDDKVAFVSLCLTLVFGFFSWLAQLKRNKQDDIRQAEQDEFNRLAQDELKEFQSFQKKFAEYQQKVSELQFNFESQENFKPYFEFSKTKSSTYVEEGKLIARICLTNVGRGTATKITTNPIDYDQDGNPMYFRTIPTKQTHAIYDYFSETFAIPNDSIFLSTTALEQTENQNHCIEFKIKFCDSSGRTYEQKFEFGYDNFLVRGINLKSVTYEPTLIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	MK448790	Streptococcus phage Javan515, complete genome	1426-1455	0	1.0
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	MK448957	Streptococcus phage Javan484, complete genome	1422-1451	0	1.0
NZ_LS483342_1	1.3\|1139124\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139124-1139153	30	MK448711	Streptococcus phage Javan235, complete genome	7584-7613	0	1.0
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448729	Streptococcus phage Javan31, complete genome	10987-11016	0	1.0
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448691	Streptococcus phage Javan17, complete genome	10987-11016	0	1.0
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448948	Streptococcus phage Javan46, complete genome	10987-11016	0	1.0
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448768	Streptococcus phage Javan47, complete genome	12132-12161	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448829	Streptococcus phage Javan7, complete genome	36731-36760	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448781	Streptococcus phage Javan5, complete genome	39999-40028	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448749	Streptococcus phage Javan39, complete genome	43049-43078	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MH853355	Streptococcus phage LF1, complete genome	27597-27626	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448729	Streptococcus phage Javan31, complete genome	38495-38524	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448837	Streptococcus phage Javan10, complete genome	36286-36315	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448691	Streptococcus phage Javan17, complete genome	38495-38524	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MH853358	Streptococcus phage LF4, complete genome	27597-27626	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448851	Streptococcus phage Javan14, complete genome	43090-43119	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448948	Streptococcus phage Javan46, complete genome	38438-38467	0	1.0
NZ_LS483342_1	1.8\|1139454\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139454-1139483	30	MK448768	Streptococcus phage Javan47, complete genome	40202-40231	0	1.0
NZ_LS483342_1	1.9\|1139520\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139520-1139549	30	MK448932	Streptococcus phage Javan42, complete genome	6474-6503	0	1.0
NZ_LS483342_1	1.9\|1139520\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139520-1139549	30	MK448669	Streptococcus phage Javan11, complete genome	6474-6503	0	1.0
NZ_LS483342_1	1.10\|1139586\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139586-1139615	30	MK448736	Streptococcus phage Javan35, complete genome	3549-3578	0	1.0
NZ_LS483342_1	1.10\|1139586\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139586-1139615	30	MK448781	Streptococcus phage Javan5, complete genome	3549-3578	0	1.0
NZ_LS483342_1	1.10\|1139586\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139586-1139615	30	MK448938	Streptococcus phage Javan44, complete genome	3549-3578	0	1.0
NZ_LS483342_1	1.10\|1139586\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139586-1139615	30	MK448911	Streptococcus phage Javan34, complete genome	3549-3578	0	1.0
NZ_LS483342_1	1.10\|1139586\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139586-1139615	30	MK448916	Streptococcus phage Javan36, complete genome	3549-3578	0	1.0
NZ_LS483342_1	1.12\|1139718\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139718-1139747	30	MK448971	Streptococcus phage Javan52, complete genome	39161-39190	0	1.0
NZ_LS483342_1	1.12\|1139718\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139718-1139747	30	MK448829	Streptococcus phage Javan7, complete genome	33854-33883	0	1.0
NZ_LS483342_1	1.12\|1139718\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139718-1139747	30	MH853355	Streptococcus phage LF1, complete genome	24720-24749	0	1.0
NZ_LS483342_1	1.12\|1139718\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139718-1139747	30	MK448837	Streptococcus phage Javan10, complete genome	32389-32418	0	1.0
NZ_LS483342_1	1.12\|1139718\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139718-1139747	30	MH853358	Streptococcus phage LF4, complete genome	24720-24749	0	1.0
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	MK448829	Streptococcus phage Javan7, complete genome	35308-35337	0	1.0
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	MK448749	Streptococcus phage Javan39, complete genome	40213-40242	0	1.0
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	MH853355	Streptococcus phage LF1, complete genome	26174-26203	0	1.0
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	AY149214	Streptococcus agalactiae bacteriophage B30 peptidoglycan endolysin gene, complete cds	698-727	0	1.0
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	MH853358	Streptococcus phage LF4, complete genome	26174-26203	0	1.0
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	AY428505	Streptococcus agalactiae bacteriophage NCTC11261 lysin PlyGBS gene, complete cds	554-583	0	1.0
NZ_LS483342_2	2.3\|1541069\|35\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541069-1541103	35	MK448768	Streptococcus phage Javan47, complete genome	34297-34331	0	1.0
NZ_LS483342_2	2.6\|1541269\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541269-1541302	34	MK448932	Streptococcus phage Javan42, complete genome	35042-35075	0	1.0
NZ_LS483342_2	2.9\|1541467\|35\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541467-1541501	35	MK448796	Streptococcus phage Javan53, complete genome	31059-31093	0	1.0
NZ_LS483342_2	2.4\|1541136\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541136-1541169	34	MK448851	Streptococcus phage Javan14, complete genome	34030-34063	1	0.971
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	MK448796	Streptococcus phage Javan53, complete genome	1809-1838	2	0.933
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	MK448736	Streptococcus phage Javan35, complete genome	1709-1738	2	0.933
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	MK448781	Streptococcus phage Javan5, complete genome	1709-1738	2	0.933
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	MK448938	Streptococcus phage Javan44, complete genome	1709-1738	2	0.933
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	MK448911	Streptococcus phage Javan34, complete genome	1709-1738	2	0.933
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	MK448916	Streptococcus phage Javan36, complete genome	1709-1738	2	0.933
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	JX409894	Streptococcus phage LYGO9, complete genome	8492-8521	2	0.933
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	JX409895	Streptococcus phage JX01, complete genome	20339-20368	2	0.933
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK449008	Streptococcus phage Javan84, complete genome	13518-13547	3	0.9
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448832	Streptococcus phage Javan85, complete genome	13518-13547	3	0.9
NZ_LS483342_2	2.4\|1541136\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541136-1541169	34	MK448796	Streptococcus phage Javan53, complete genome	38885-38918	3	0.912
NZ_LS483342_2	2.4\|1541136\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541136-1541169	34	MK448742	Streptococcus phage Javan37, complete genome	30083-30116	3	0.912
NZ_LS483342_2	2.6\|1541269\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541269-1541302	34	MK449012	Streptococcus phage Javan94, complete genome	33617-33650	3	0.912
NZ_LS483342_1	1.3\|1139124\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139124-1139153	30	MK448750	Streptococcus phage Javan393, complete genome	3056-3085	5	0.833
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448979	Streptococcus phage Javan534, complete genome	11154-11183	5	0.833
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448799	Streptococcus phage Javan535, complete genome	11154-11183	5	0.833
NZ_LS483342_1	1.6\|1139322\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139322-1139351	30	MK448800	Streptococcus phage Javan539, complete genome	11155-11184	5	0.833
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	DQ500118	Rhizobium phage 16-3, complete genome	17522-17551	5	0.833
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	72996-73027	5	0.844
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	82837-82866	6	0.8
NZ_LS483342_1	1.3\|1139124\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139124-1139153	30	KJ018211	Shewanella sp. phage 1/40, complete genome	81048-81077	6	0.8
NZ_LS483342_1	1.15\|1139916\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139916-1139945	30	KF114877	Leptospira phage LnoZ_CZ214, complete genome	59536-59565	6	0.8
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	548430-548461	6	0.812
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP038623	Arsenophonus nasoniae strain FIN plasmid pArsFIN11, complete sequence	39364-39395	6	0.812
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_017421	Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence	28345-28376	6	0.812
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_001856	Borreliella burgdorferi B31 plasmid lp38, complete sequence	28055-28086	6	0.812
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP019853	Borreliella burgdorferi plasmid lp38, complete sequence	28068-28099	6	0.812
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP019764	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence	28061-28092	6	0.812
NZ_LS483342_2	2.7\|1541335\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541335-1541368	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	606095-606128	6	0.824
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NZ_CP034168	Enterococcus avium strain 352 plasmid unnamed, complete sequence	14259-14288	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	130740-130769	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	124624-124653	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	1843-1872	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	40599-40628	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	130740-130769	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	180131-180160	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	2565-2594	7	0.767
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	153049-153078	7	0.767
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	MN399336	Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome	82194-82223	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_LR130559	Escherichia coli strain MS14385 isolate MS14385 plasmid 5	14396-14425	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP040921	Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence	3878-3907	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP042622	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence	22416-22445	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	42448-42477	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP024829	Escherichia coli strain CREC-544 plasmid pCREC-544_3, complete sequence	22651-22680	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP048340	Escherichia coli strain 142 plasmid p142_C, complete sequence	30154-30183	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence	46876-46905	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_LT985302	Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI	39785-39814	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	AP019710	Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome	32823-32852	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP009861	Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence	30475-30504	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	33201-33230	7	0.767
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	NZ_CP032259	Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence	3454-3483	7	0.767
NZ_LS483342_1	1.12\|1139718\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139718-1139747	30	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	1328608-1328637	7	0.767
NZ_LS483342_1	1.12\|1139718\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139718-1139747	30	MN693024	Marine virus AFVG_117M49, complete genome	11226-11255	7	0.767
NZ_LS483342_1	1.13\|1139784\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139784-1139813	30	NC_010683	Ralstonia pickettii 12J plasmid pRPIC01, complete sequence	30106-30135	7	0.767
NZ_LS483342_1	1.14\|1139850\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139850-1139879	30	MH059636	Erwinia phage Cronus, complete genome	139746-139775	7	0.767
NZ_LS483342_1	1.15\|1139916\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139916-1139945	30	NZ_CP033050	Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence	167033-167062	7	0.767
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	484591-484622	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	AP014284	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, * SEQUENCING IN PROGRESS *	9262-9293	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	46517-46548	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	131643-131674	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	15273-15304	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	232837-232868	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	25057-25088	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	158727-158758	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	158558-158589	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	1638-1669	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_020380	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-16, complete sequence	13185-13216	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	MH517022	Acinetobacter phage SH-Ab 15599, complete genome	51037-51068	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	MK496784	Capybara microvirus Cap3_SP_414, complete genome	2372-2403	7	0.781
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	U72945	Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region	829-860	7	0.781
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	27063-27092	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	MK473382	Clostridium phage JD032, complete genome	12174-12203	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	LN881738	Escherichia phage slur17, complete genome	33369-33398	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_048665	Clostridium phage phiCDHM14, complete genome	22262-22291	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	KU057941	Clostridium phage CDSH1, complete genome	28658-28687	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_028905	Clostridium phage phiCD111, complete genome	28432-28461	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	HG796225	Clostridium phage phiCDHM13 complete genome	21762-21791	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	LN681538	Clostridium phage phiCD481-1, complete genome	21502-21531	8	0.733
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	HG798901	Clostridium phage phiCDHM11 complete genome	21762-21791	8	0.733
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	NZ_MF925335	Edwardsiella tarda strain 150611-1 plasmid p150611 1B-1, complete sequence	2614-2643	8	0.733
NZ_LS483342_1	1.4\|1139190\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139190-1139219	30	NC_011668	Shewanella baltica OS223 plasmid pS22302, complete sequence	56767-56796	8	0.733
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	JQ340088	Halocynthia phage JM-2012, complete genome	43242-43271	8	0.733
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP029456	Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence	61423-61454	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	70696-70727	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	CP016196	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence	62259-62290	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	70700-70731	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	70707-70738	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	70706-70737	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	MH830339	Proteus phage Stubb, complete genome	26806-26837	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	MG030347	Proteus phage PM135, complete genome	76557-76588	8	0.75
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	MN935203	UNVERIFIED: Proteus phage VTCCBPA139, partial genome	26007-26038	8	0.75
NZ_LS483342_2	2.2\|1541003\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541003-1541036	34	NZ_MH569712	Serratia marcescens strain S120 plasmid pPM120-2, complete sequence	42532-42565	8	0.765
NZ_LS483342_2	2.7\|1541335\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541335-1541368	34	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	617393-617426	8	0.765
NZ_LS483342_2	2.7\|1541335\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541335-1541368	34	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	378878-378911	8	0.765
NZ_LS483342_2	2.7\|1541335\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541335-1541368	34	NC_015901	Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF22, complete sequence	18325-18358	8	0.765
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_028838	Clostridium phage phiCD506, complete genome	22083-22112	9	0.7
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	HM568888	Clostridium phage phiCD38-2, complete genome	28154-28183	9	0.7
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_028958	Clostridium phage phiCD146, complete genome	27716-27745	9	0.7
NZ_LS483342_1	1.11\|1139652\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139652-1139681	30	MT375525	Pelagibacter phage Greip EXVC02, complete genome	26155-26184	9	0.7
NZ_LS483342_1	1.15\|1139916\|30\|NZ_LS483342\|CRT,CRISPRCasFinder,PILER-CR	1139916-1139945	30	NC_021709	Alteromonas mediterranea 615 plasmid unnamed, complete sequence	50785-50814	9	0.7
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	93170-93201	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	228972-229003	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	9883-9914	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_AP017932	Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence	5632-5663	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP025208	Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence	12385-12416	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	57054-57085	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP017376	Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence	17183-17214	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP021472	Pediococcus pentosaceus strain SRCM100892 plasmid pPC892-2, complete sequence	18052-18083	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP052067	Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence	1046-1077	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP031209	Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence	42073-42104	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP035015	Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence	24116-24147	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	34563-34594	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP048005	Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence	41814-41845	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP046038	Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence	31384-31415	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP017410	Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence	12201-12232	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_016608	Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence	15266-15297	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP029967	Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence	42716-42747	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP028336	Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence	38185-38216	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP028231	Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence	3683-3714	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP018183	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence	17219-17250	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	MH937473	Streptococcus phage CHPC929, complete genome	34811-34842	9	0.719
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NC_010353	Streptococcus phage 858, complete genome	33013-33044	9	0.719
NZ_LS483342_2	2.7\|1541335\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541335-1541368	34	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	243737-243770	9	0.735
NZ_LS483342_1	1.2\|1139058\|30\|NZ_LS483342\|CRT,CRISPRCasFinder	1139058-1139087	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	640927-640956	10	0.667
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	161310-161341	10	0.688
NZ_LS483342_2	2.2\|1541003\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541003-1541036	34	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	3102-3135	10	0.706
NZ_LS483342_2	2.2\|1541003\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541003-1541036	34	CP029330	Clostridium beijerinckii isolate WB53 plasmid unnamed1	17601-17634	10	0.706
NZ_LS483342_2	2.1\|1540939\|32\|NZ_LS483342\|CRT	1540939-1540970	32	NZ_CP031220	Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence	90370-90401	11	0.656
NZ_LS483342_2	2.7\|1541335\|34\|NZ_LS483342\|CRT,PILER-CR,CRISPRCasFinder	1541335-1541368	34	NC_013792	Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence	238853-238886	11	0.676

1. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
gatggagtgttagaagaattaaaaagaaga	Protospacer
******************************

2. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
gatggagtgttagaagaattaaaaagaaga	Protospacer
******************************

3. spacer 1.3|1139124|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 0, identity: 1.0

tcaacatgcttacttagagcatctcgctga	CRISPR spacer
tcaacatgcttacttagagcatctcgctga	Protospacer
******************************

4. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 0, identity: 1.0

aacatcccaatccattgctgtataaccttc	CRISPR spacer
aacatcccaatccattgctgtataaccttc	Protospacer
******************************

5. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 0, identity: 1.0

aacatcccaatccattgctgtataaccttc	CRISPR spacer
aacatcccaatccattgctgtataaccttc	Protospacer
******************************

6. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 0, identity: 1.0

aacatcccaatccattgctgtataaccttc	CRISPR spacer
aacatcccaatccattgctgtataaccttc	Protospacer
******************************

7. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

aacatcccaatccattgctgtataaccttc	CRISPR spacer
aacatcccaatccattgctgtataaccttc	Protospacer
******************************

8. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

9. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

10. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

11. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

12. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

13. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

14. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

15. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

16. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

17. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

18. spacer 1.8|1139454|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

acagagttccgattgaagtaagcaaatcag	CRISPR spacer
acagagttccgattgaagtaagcaaatcag	Protospacer
******************************

19. spacer 1.9|1139520|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448932 (Streptococcus phage Javan42, complete genome) position: , mismatch: 0, identity: 1.0

tcttgcgtgcccttacttcttcttgagttt	CRISPR spacer
tcttgcgtgcccttacttcttcttgagttt	Protospacer
******************************

20. spacer 1.9|1139520|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448669 (Streptococcus phage Javan11, complete genome) position: , mismatch: 0, identity: 1.0

tcttgcgtgcccttacttcttcttgagttt	CRISPR spacer
tcttgcgtgcccttacttcttcttgagttt	Protospacer
******************************

21. spacer 1.10|1139586|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

accgccattagggttaggtacgacatgttg	CRISPR spacer
accgccattagggttaggtacgacatgttg	Protospacer
******************************

22. spacer 1.10|1139586|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

accgccattagggttaggtacgacatgttg	CRISPR spacer
accgccattagggttaggtacgacatgttg	Protospacer
******************************

23. spacer 1.10|1139586|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 0, identity: 1.0

accgccattagggttaggtacgacatgttg	CRISPR spacer
accgccattagggttaggtacgacatgttg	Protospacer
******************************

24. spacer 1.10|1139586|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

accgccattagggttaggtacgacatgttg	CRISPR spacer
accgccattagggttaggtacgacatgttg	Protospacer
******************************

25. spacer 1.10|1139586|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

accgccattagggttaggtacgacatgttg	CRISPR spacer
accgccattagggttaggtacgacatgttg	Protospacer
******************************

26. spacer 1.12|1139718|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 0, identity: 1.0

tcagccattgtcttaatcaaatcgttaaca	CRISPR spacer
tcagccattgtcttaatcaaatcgttaaca	Protospacer
******************************

27. spacer 1.12|1139718|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

tcagccattgtcttaatcaaatcgttaaca	CRISPR spacer
tcagccattgtcttaatcaaatcgttaaca	Protospacer
******************************

28. spacer 1.12|1139718|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

tcagccattgtcttaatcaaatcgttaaca	CRISPR spacer
tcagccattgtcttaatcaaatcgttaaca	Protospacer
******************************

29. spacer 1.12|1139718|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

tcagccattgtcttaatcaaatcgttaaca	CRISPR spacer
tcagccattgtcttaatcaaatcgttaaca	Protospacer
******************************

30. spacer 1.12|1139718|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

tcagccattgtcttaatcaaatcgttaaca	CRISPR spacer
tcagccattgtcttaatcaaatcgttaaca	Protospacer
******************************

31. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcaattgcttggctgtctgacagacatc	Protospacer
******************************

32. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcaattgcttggctgtctgacagacatc	Protospacer
******************************

33. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcaattgcttggctgtctgacagacatc	Protospacer
******************************

34. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to AY149214 (Streptococcus agalactiae bacteriophage B30 peptidoglycan endolysin gene, complete cds) position: , mismatch: 0, identity: 1.0

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcaattgcttggctgtctgacagacatc	Protospacer
******************************

35. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcaattgcttggctgtctgacagacatc	Protospacer
******************************

36. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to AY428505 (Streptococcus agalactiae bacteriophage NCTC11261 lysin PlyGBS gene, complete cds) position: , mismatch: 0, identity: 1.0

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcaattgcttggctgtctgacagacatc	Protospacer
******************************

37. spacer 2.3|1541069|35|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

aaaacggatggttgtatattgcaggctatcagcta	CRISPR spacer
aaaacggatggttgtatattgcaggctatcagcta	Protospacer
***********************************

38. spacer 2.6|1541269|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to MK448932 (Streptococcus phage Javan42, complete genome) position: , mismatch: 0, identity: 1.0

tttggctgtttgagtagctcgttgacttttgcct	CRISPR spacer
tttggctgtttgagtagctcgttgacttttgcct	Protospacer
**********************************

39. spacer 2.9|1541467|35|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

gtcttttcagacagaacataaatggaaatatagta	CRISPR spacer
gtcttttcagacagaacataaatggaaatatagta	Protospacer
***********************************

40. spacer 2.4|1541136|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 1, identity: 0.971

tgatctaattagtgatatgctacgtctttacgac	CRISPR spacer
tgatttaattagtgatatgctacgtctttacgac	Protospacer
****.*****************************

41. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

42. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

43. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

44. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

45. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

46. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 2, identity: 0.933

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgaaatatcctcagaagataaaa	Protospacer
****************.**********.**

47. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 2, identity: 0.933

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcactcgcttggctgtctgacagacatc	Protospacer
***** *.**********************

48. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 2, identity: 0.933

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcactcgcttggctgtctgacagacatc	Protospacer
***** *.**********************

49. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 3, identity: 0.9

aacatcccaatccattgctgtataaccttc	CRISPR spacer
catatcccaatccattgctgtataaccctc	Protospacer
 *.************************.**

50. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 3, identity: 0.9

aacatcccaatccattgctgtataaccttc	CRISPR spacer
catatcccaatccattgctgtataaccctc	Protospacer
 *.************************.**

51. spacer 2.4|1541136|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 3, identity: 0.912

tgatctaattagtgatatgctacgtctttacgac	CRISPR spacer
tgacttaattagtgatatgctacgtctttacgat	Protospacer
***..****************************.

52. spacer 2.4|1541136|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 3, identity: 0.912

tgatctaattagtgatatgctacgtctttacgac	CRISPR spacer
cgacttaattagtgatatgctacgtctttacgac	Protospacer
.**..*****************************

53. spacer 2.6|1541269|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 3, identity: 0.912

tttggctgtttgagtagctcgttgacttttgcct	CRISPR spacer
tgtggttgtttgagtagctcgttgacttttgctt	Protospacer
* ***.**************************.*

54. spacer 1.3|1139124|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448750 (Streptococcus phage Javan393, complete genome) position: , mismatch: 5, identity: 0.833

tcaacatgcttacttagagcatctcgctga	CRISPR spacer
tcaacatgtttacttagtgcatctcgagaa	Protospacer
********.******** ********  .*

55. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448979 (Streptococcus phage Javan534, complete genome) position: , mismatch: 5, identity: 0.833

aacatcccaatccattgctgtataaccttc	CRISPR spacer
agtgtcccaatccattgctgtatagccctc	Protospacer
*...********************.**.**

56. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448799 (Streptococcus phage Javan535, complete genome) position: , mismatch: 5, identity: 0.833

aacatcccaatccattgctgtataaccttc	CRISPR spacer
agtgtcccaatccattgctgtatagccctc	Protospacer
*...********************.**.**

57. spacer 1.6|1139322|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK448800 (Streptococcus phage Javan539, complete genome) position: , mismatch: 5, identity: 0.833

aacatcccaatccattgctgtataaccttc	CRISPR spacer
agtgtcccaatccattgctgtatagccctc	Protospacer
*...********************.**.**

58. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to DQ500118 (Rhizobium phage 16-3, complete genome) position: , mismatch: 5, identity: 0.833

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
agtcaattgcttggctgtccgacacaccgg	Protospacer
*******************.**** **

59. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 5, identity: 0.844

ataatgaattaataaaaaaataat-cattatta	CRISPR spacer
ataatgaatttatataaaaataatacagtttt-	Protospacer
********** *** ********* ** * **

60. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 6, identity: 0.8

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
aaaggaatgttagaagaattaaaaaatagt	Protospacer
.* ***.******************. **

61. spacer 1.3|1139124|30|NZ_LS483342|CRT,CRISPRCasFinder matches to KJ018211 (Shewanella sp. phage 1/40, complete genome) position: , mismatch: 6, identity: 0.8

tcaacatgcttacttagagcatc-tcgctga	CRISPR spacer
tctacatgcttacttatagcatcactactg-	Protospacer
** ************* ****** ...***

62. spacer 1.15|1139916|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 6, identity: 0.8

agacgtgca---tcaattgaagatagaatagag	CRISPR spacer
---cttgaaaagtcaattgaagaaagaatagag	Protospacer
   * ** *   *********** *********

63. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aaaatttgctaataaaaaaataatcattaata	Protospacer
* ***  ..******************** **

64. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP038623 (Arsenophonus nasoniae strain FIN plasmid pArsFIN11, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
attatatgttaataactaaataatcattatta	Protospacer
** **. .*******  ***************

65. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_017421 (Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

66. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_001856 (Borreliella burgdorferi B31 plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

67. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP019853 (Borreliella burgdorferi plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

68. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP019764 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ataatgaattaataaaaaaataatca-ttatta	CRISPR spacer
ataatgaataactaaaaaaataaggaggtatt-	Protospacer
********* * ***********  *  ****

69. spacer 2.7|1541335|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

-ataattatggtagtcttatttttaatataaaata	CRISPR spacer
cattcttat-ttattcttattttcaatataaaata	Protospacer
 **  ****  ** *********.***********

70. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_CP034168 (Enterococcus avium strain 352 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
aatgcagtattagaagaattaaaaaccaat	Protospacer
.*** ***.****************  *.

71. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

72. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

73. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

74. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

75. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

76. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

77. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
ggcgctttgttagaagagttaaaaacaaga	Protospacer
*..*   **********.******* ****

78. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 7, identity: 0.767

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
gaacgagtattagaagaattaaaaaaggaa	Protospacer
**  ****.****************....*

79. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MN399336 (Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome) position: , mismatch: 7, identity: 0.767

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tcacttgtgtactatcttcagaaaacttac	Protospacer
********* * ***********.*.  *

80. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR130559 (Escherichia coli strain MS14385 isolate MS14385 plasmid 5) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

81. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP040921 (Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaagttatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

82. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP042622 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

83. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024865 (Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaagttatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

84. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024829 (Escherichia coli strain CREC-544 plasmid pCREC-544_3, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

85. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP048340 (Escherichia coli strain 142 plasmid p142_C, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaagttatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

86. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to CP053252 (Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

87. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LT985302 (Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

88. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to AP019710 (Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

89. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP009861 (Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

90. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

91. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032259 (Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaaattatattgttgatgaagtatcaga	Protospacer
.  ** ******.***************.

92. spacer 1.12|1139718|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tcagccattgtcttaatcaaatcgttaaca	CRISPR spacer
tcagcgattttcttaatcaaatcctcagac	Protospacer
***** *** ************* *.*.

93. spacer 1.12|1139718|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MN693024 (Marine virus AFVG_117M49, complete genome) position: , mismatch: 7, identity: 0.767

tcagccattgtcttaatcaaat--cgttaaca	CRISPR spacer
ccagccattgtctgaatcaaatgccatttc--	Protospacer
.************ ********  *.**

94. spacer 1.13|1139784|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NC_010683 (Ralstonia pickettii 12J plasmid pRPIC01, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaattgcttggctgtctgacagacatc	CRISPR spacer
gcagcattgctcggctgtctgacagacaac	Protospacer
.    ******.**************** *

95. spacer 1.14|1139850|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MH059636 (Erwinia phage Cronus, complete genome) position: , mismatch: 7, identity: 0.767

actttgtggataaagcggacttaatacaag	CRISPR spacer
ttctactggataaagaggacttgatacaag	Protospacer
 ..*  ********* ******.*******

96. spacer 1.15|1139916|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

agacgtgcatcaattgaagatagaatagag	CRISPR spacer
gatcttgcatcaaatgaagataaaatagaa	Protospacer
.. * ******** ********.******.

97. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.781

-ataatgaattaataaaaaaataatcattatta	CRISPR spacer
tataa-atattaataaaaaacaaatcattatct	Protospacer
 **** . ************  *********.

98. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to AP014284 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atccagaattaataaaaaaaaaattattagaa	Protospacer
**   *************** ***.****  *

99. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

100. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

101. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaagaaattttatact-	Protospacer
 ******************. ***. * **.*

102. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

103. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

104. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

105. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaagaaattttatact-	Protospacer
 ******************. ***. * **.*

106. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcat-tatta	CRISPR spacer
ctaatgaattaataaaaaaggaattttatact-	Protospacer
 ******************. ***. * **.*

107. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_020380 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-16, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta--	CRISPR spacer
ataaataattaataaaaaaataa--aacactacg	Protospacer
****  *****************  * .*.**

108. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to MH517022 (Acinetobacter phage SH-Ab 15599, complete genome) position: , mismatch: 7, identity: 0.781

ataatgaat--taataaaaaaataatcattatta	CRISPR spacer
--gacgtattataatagaaaaataatcactatta	Protospacer
  .*.* **  *****.***********.*****

109. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to MK496784 (Capybara microvirus Cap3_SP_414, complete genome) position: , mismatch: 7, identity: 0.781

ataatg-aattaataaaaaaataatcattatta	CRISPR spacer
-tatcgtaattaataaaaaaatcattattacga	Protospacer
 ** .* *************** **.****. *

110. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to U72945 (Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region) position: , mismatch: 7, identity: 0.781

ataatgaattaataaaaaaataatcattatta-	CRISPR spacer
ttaaacaattaataaaaaaataatt-ttatgga	Protospacer
 ***  ******************. **** .

111. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
aatggagtgttagatgaatttaaactacag	Protospacer
.************* ***** ***  * ..

112. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

113. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

114. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

115. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

116. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

117. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

118. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

119. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 8, identity: 0.733

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaaa	Protospacer
. *.. .*************.*******.*

120. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NZ_MF925335 (Edwardsiella tarda strain 150611-1 plasmid p150611 1B-1, complete sequence) position: , mismatch: 8, identity: 0.733

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
cattttgtgaaatatcttcagatgaaagtc	Protospacer
.  .****************** ** **

121. spacer 1.4|1139190|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_011668 (Shewanella baltica OS223 plasmid pS22302, complete sequence) position: , mismatch: 8, identity: 0.733

tcacttgtgaaatatcttcagaagatagaa	CRISPR spacer
tggcttgtgcaatatcttcagaagtcgaat	Protospacer
* .****** ************** ...*

122. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to JQ340088 (Halocynthia phage JM-2012, complete genome) position: , mismatch: 8, identity: 0.733

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
tgaaacttatatcttggatgaagtatttaa	Protospacer
.  ********** * **********. *

123. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP029456 (Bacillus cereus strain FORC087 plasmid pFORC087.2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataat-cattatta	CRISPR spacer
gaaattaattaatagaaaaataatccaatgct-	Protospacer
. *** ********.********* ** *..*

124. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

125. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to CP016196 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaactaataaaaaaataataaaatata	Protospacer
 ****.**.*************** *    **

126. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

127. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

128. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 8, identity: 0.75

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ttaataaattaatgaaaaaataatattaacaa	Protospacer
 ****.*******.**********  * *. *

129. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to MH830339 (Proteus phage Stubb, complete genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

130. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to MG030347 (Proteus phage PM135, complete genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

131. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to MN935203 (UNVERIFIED: Proteus phage VTCCBPA139, partial genome) position: , mismatch: 8, identity: 0.75

ataatga-----attaataaaaaaataatcattatta	CRISPR spacer
-----gagcattattaataaataaataatcataataa	Protospacer
     **     ********* ********** ** *

132. spacer 2.2|1541003|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MH569712 (Serratia marcescens strain S120 plasmid pPM120-2, complete sequence) position: , mismatch: 8, identity: 0.765

gcgttgatatgaaaggaaattatag-agatatgat	CRISPR spacer
tcgttgatctaaaaggaaattatagcactcataa-	Protospacer
 ******* *.************** *  .**.*

133. spacer 2.7|1541335|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.765

ataattatggtagtcttatttttaatataaaata	CRISPR spacer
acaaaaatgttagtcttatgtttaatataaacac	Protospacer
*.**  *** ********* ***********

134. spacer 2.7|1541335|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 8, identity: 0.765

ataattatggtagtcttatttttaatataaaata-	CRISPR spacer
aaaattaaagtagtcttatttttaat-cattttac	Protospacer
* ***** .***************** .*   **

135. spacer 2.7|1541335|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to NC_015901 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF22, complete sequence) position: , mismatch: 8, identity: 0.765

ataattatggtagtcttatttttaatataaaata	CRISPR spacer
taatttctattattctaatttttaatataaaata	Protospacer
  * ** *. ** *** *****************

136. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 9, identity: 0.7

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaag	Protospacer
. *.. .*************.*******..

137. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 9, identity: 0.7

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaag	Protospacer
. *.. .*************.*******..

138. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 9, identity: 0.7

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
actaatatgttagaagaattgaaaagaaag	Protospacer
. *.. .*************.*******..

139. spacer 1.11|1139652|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to MT375525 (Pelagibacter phage Greip EXVC02, complete genome) position: , mismatch: 9, identity: 0.7

cttaacttatatcgttgatgaagtatcaac	CRISPR spacer
taaaacttatattgttaatgaagtattttt	Protospacer
.  *********.***.*********.  .

140. spacer 1.15|1139916|30|NZ_LS483342|CRT,CRISPRCasFinder,PILER-CR matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

agacgtgcatcaattgaagatagaatagag	CRISPR spacer
cgacctgcatcagttgaagatagagcgata	Protospacer
 *** *******.***********.... .

141. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ataatgaatttataaaaaaataaatttaggag	Protospacer
********** ************ . * .  .

142. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
ataatgaatttataaaaaaataaatttaggag	Protospacer
********** ************ . * .  .

143. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
caaaactattaatataaaagtaatcattatct	Protospacer
  **   ******* ****.**********.

144. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

145. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP025208 (Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

146. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP021933 (Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

147. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP017376 (Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

148. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP021472 (Pediococcus pentosaceus strain SRCM100892 plasmid pPC892-2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

149. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP052067 (Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

150. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP031209 (Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

151. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP035015 (Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

152. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaat-taataaaaaaataatcattatta	CRISPR spacer
-tggcaggtgtaacaaaaaaattatcattatta	Protospacer
 *......* ***.******** **********

153. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP048005 (Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

154. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP046038 (Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

155. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP017410 (Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

156. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_016608 (Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

157. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP029967 (Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

158. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP028336 (Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

159. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP028231 (Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

160. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP018183 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
aacccaatttaataaaaaaacaatgattattg	Protospacer
*   ..* ************.*** ******.

161. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atattgaattaataaaaaagtaagtaagtaaa	Protospacer
*** ***************.*** .*     *

162. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NC_010353 (Streptococcus phage 858, complete genome) position: , mismatch: 9, identity: 0.719

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
atattgaattaataaaaaagtaagtaagtaaa	Protospacer
*** ***************.*** .*     *

163. spacer 2.7|1541335|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 9, identity: 0.735

ataattatggtagtcttatttttaa------tataaaata	CRISPR spacer
ttaattattgtagtattatttttaaagtgtttat------	Protospacer
 ******* ***** **********      ***

164. spacer 1.2|1139058|30|NZ_LS483342|CRT,CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.667

gatggagtgttagaagaattaaaaagaaga	CRISPR spacer
atgagagtcttagaagaattaaaaattctt	Protospacer
.  .**** ****************

165. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 10, identity: 0.688

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
gaaatgaataaatgaaaaaataatctaccctt	Protospacer
. ******* ***.***********  . .*

166. spacer 2.2|1541003|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgttgatatgaaaggaaattatagagatatgat	CRISPR spacer
caaactatatgaaagaaaattataaagatataag	Protospacer
  . . *********.********.******.*

167. spacer 2.2|1541003|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to CP029330 (Clostridium beijerinckii isolate WB53 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgttgatatgaaaggaaattatagagatatgat	CRISPR spacer
caaactatatgaaagaaaattataaagatataag	Protospacer
  . . *********.********.******.*

168. spacer 2.1|1540939|32|NZ_LS483342|CRT matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 11, identity: 0.656

ataatgaattaataaaaaaataatcattatta	CRISPR spacer
tagatgaattaataaataaatattcaaatggg	Protospacer
  .************* ***** ***     .

169. spacer 2.7|1541335|34|NZ_LS483342|CRT,PILER-CR,CRISPRCasFinder matches to NC_013792 (Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence) position: , mismatch: 11, identity: 0.676

ataattatggtagtcttatttttaatataaaata	CRISPR spacer
ttttcaccactaattttatttttaatataaaata	Protospacer
 *  .  .. **.*.*******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36470 : 48535

Microbacterium_phage(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042263.1\|36470_40196_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-40	27.0
WP_000220672.1\|40429_41884_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.3e-54	32.5
WP_001291325.1\|41911_42934_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	9.6e-65	44.6
WP_000685111.1\|43101_43653_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-25	35.6
WP_000780020.1\|43672_44425_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000166558.1\|44444_45992_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.5e-77	48.9
WP_001045908.1\|46184_47084_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000783424.1\|47230_48535_+	LysM peptidoglycan-binding domain-containing protein	A0A2D1GNZ3	Streptomyces_phage	1.7e-05	40.5

DBSCAN-SWA_2

122754 : 175933

Streptococcus_phage(33.33%)

tRNA,transposase,integrase

attL 113409:113424|attR 176976:176991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
113409:113424	attL	NA	NA	NA	NA
WP_000160598.1\|122754_123921_-\|transposase	IS30-like element ISSag9 family transposase	NA	NA	NA	NA
WP_001284503.1\|124206_125661_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_000668253.1\|125700_126669_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_000794185.1\|126721_127663_-	ribose ABC transporter permease	NA	NA	NA	NA
WP_000687224.1\|127664_129143_-	sugar ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.0e-12	25.3
WP_000750740.1\|129158_129557_-	D-ribose pyranase	NA	NA	NA	NA
WP_000065857.1\|129531_130443_-	ribokinase	NA	NA	NA	NA
WP_000104359.1\|130435_131422_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000017573.1\|131603_132692_+	ABC transporter permease	NA	NA	NA	NA
WP_001274148.1\|132691_133378_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.5e-34	35.0
WP_000590687.1\|133408_134080_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.3e-40	40.8
WP_001878564.1\|134063_135143_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.5e-41	33.1
WP_000514048.1\|135296_136487_+	argininosuccinate synthase	NA	NA	NA	NA
WP_000164574.1\|136505_137894_+	argininosuccinate lyase	NA	NA	NA	NA
WP_001018987.1\|138034_138916_+	fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000197055.1\|139000_139918_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_001140949.1\|140156_140345_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_000216447.1\|140476_140842_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_000036701.1\|140841_142506_+	DAK2 domain-containing protein	NA	NA	NA	NA
WP_000052520.1\|142653_143538_+	SPFH domain-containing protein	A0A1V0SL90	Klosneuvirus	9.5e-37	35.4
WP_000818733.1\|143629_143746_-	putative metal homeostasis protein	NA	NA	NA	NA
WP_001871253.1\|143938_144961_+\|transposase	IS30-like element ISSag3 family transposase	Q9MBM9	Staphylococcus_prophage	7.1e-36	32.7
WP_109813542.1\|145317_145482_+	hypothetical protein	A0A1S5SBP9	Streptococcus_phage	3.8e-08	81.1
WP_000477139.1\|145611_149016_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA
WP_000241942.1\|149095_149623_-	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA
WP_000594680.1\|149731_151072_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_001024192.1\|151068_151722_-	response regulator transcription factor	NA	NA	NA	NA
WP_088181596.1\|151925_152731_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_000589235.1\|153021_153630_-	DUF2812 domain-containing protein	NA	NA	NA	NA
WP_000827865.1\|153616_153952_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000234841.1\|154480_154969_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000838140.1\|155137_155899_-	ABC transporter permease	NA	NA	NA	NA
WP_000644459.1\|155895_156798_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.3e-29	33.8
WP_088181596.1\|156840_157645_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_025193275.1\|157845_158238_+	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_001204138.1\|158416_159271_+	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	1.9e-29	36.8
WP_000470462.1\|159949_160567_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000901040.1\|160570_161293_+	ABC transporter permease	NA	NA	NA	NA
WP_000731464.1\|161446_161848_+	hypothetical protein	NA	NA	NA	NA
WP_000108715.1\|162558_162753_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_001266200.1\|163047_163356_-	hypothetical protein	NA	NA	NA	NA
WP_001043246.1\|163431_163776_-	hypothetical protein	NA	NA	NA	NA
WP_000731522.1\|164055_164439_-	DUF1310 family protein	NA	NA	NA	NA
WP_000731527.1\|164704_165079_-	DUF1310 family protein	NA	NA	NA	NA
WP_000078286.1\|165179_165470_-	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_000134166.1\|166087_166414_-	hypothetical protein	NA	NA	NA	NA
WP_000792760.1\|167472_167805_+	hypothetical protein	NA	NA	NA	NA
WP_000622523.1\|167806_168379_+	hypothetical protein	NA	NA	NA	NA
WP_000731526.1\|168485_168872_+	DUF1310 family protein	NA	NA	NA	NA
WP_001870649.1\|168868_169147_+	hypothetical protein	NA	NA	NA	NA
WP_001933101.1\|169140_169623_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000844742.1\|169754_170345_-	glutamine amidotransferase	NA	NA	NA	NA
WP_000241025.1\|170415_171366_+	WYL domain-containing protein	A0A1B0RXM1	Streptococcus_phage	1.1e-06	30.3
WP_000141654.1\|171652_172147_-	helix-turn-helix transcriptional regulator	U6E975	Streptococcus_phage	2.8e-06	43.5
WP_000947485.1\|172603_172777_+	hypothetical protein	NA	NA	NA	NA
WP_000256345.1\|173102_173522_+	hypothetical protein	NA	NA	NA	NA
WP_000483438.1\|173524_174553_+	replication initiation factor domain-containing protein	NA	NA	NA	NA
WP_000184043.1\|174613_174799_+	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_001262282.1\|174802_175933_+\|integrase	site-specific integrase	Q9AZR0	Lactococcus_phage	2.1e-41	30.1
176976:176991	attR	NA	NA	NA	NA

DBSCAN-SWA_3

526495 : 538013

Streptococcus_phage(90.91%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000178146.1\|526495_527206_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-18	28.5
WP_001144248.1\|527224_527884_+	CBS domain-containing protein	M1NSC5	Streptococcus_phage	5.2e-64	55.6
WP_000160532.1\|528148_529315_-\|transposase	IS30-like element ISSag9 family transposase	NA	NA	NA	NA
WP_000715592.1\|529523_530159_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.8e-67	61.1
WP_000364565.1\|530178_531042_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.3e-74	49.7
WP_000358198.1\|531071_531398_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000425856.1\|531397_532267_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	4.9e-110	70.4
WP_000603277.1\|532536_533172_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001167085.1\|534464_535013_+	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000232156.1\|535075_536257_+	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.0e-168	75.6
WP_000966772.1\|536311_536788_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000287944.1\|536789_537146_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.5e-41	71.8
WP_000767484.1\|537185_538013_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	4.3e-124	78.0

DBSCAN-SWA_4

1440243 : 1447797

Streptococcus_phage(50.0%)

transposase,integrase

attL 1434057:1434071|attR 1455496:1455510

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1434057:1434071	attL	NA	NA	NA	NA
WP_000353149.1\|1440243_1440900_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-22	31.8
WP_000594360.1\|1440909_1442187_-	ABC transporter permease	NA	NA	NA	NA
WP_000508795.1\|1442928_1443090_+	NINE protein	NA	NA	NA	NA
WP_001867107.1\|1443262_1443472_-\|transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	1.4e-15	55.4
WP_001865698.1\|1443597_1443858_-\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	3.4e-11	43.0
WP_001122304.1\|1443879_1444080_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_000640620.1\|1444241_1444646_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001872365.1\|1444645_1444912_+	hypothetical protein	Q77YW7	Streptococcus_phage	9.2e-20	65.2
WP_071659971.1\|1444914_1445529_+\|integrase	site-specific integrase	F8HGP4	Streptococcus_phage	9.2e-55	60.7
WP_001068667.1\|1445673_1446021_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000595708.1\|1446600_1447797_-	voltage-gated chloride channel family protein	A0A1X9I5Z9	Streptococcus_phage	4.6e-103	54.5
1455496:1455510	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1629698 : 1659443

Streptococcus_phage(85.71%)

integrase

attL 1621430:1621446|attR 1658972:1658988

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1621430:1621446	attL	NA	NA	NA	NA
WP_000182605.1\|1629698_1632341_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	3.2e-56	28.5
WP_000593336.1\|1632453_1633266_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_000020721.1\|1633280_1633895_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_002835202.1\|1634117_1635335_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.0e-230	98.5
WP_000814512.1\|1635416_1635620_-	excisionase	A0A1S5SF07	Streptococcus_phage	2.0e-30	97.0
WP_000857133.1\|1636076_1636307_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000804599.1\|1636303_1636726_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	3.7e-71	97.9
WP_001227347.1\|1637230_1637584_+	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|1637643_1637811_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_000691727.1\|1637929_1639849_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	100.0
WP_001791010.1\|1639864_1639981_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224319.1\|1640225_1641158_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-171	100.0
WP_000769868.1\|1641154_1642156_-	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_000804748.1\|1642152_1644330_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000331160.1\|1644332_1646780_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|1646763_1647270_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|1647244_1647742_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|1647858_1648080_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000398284.1\|1648122_1649328_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_000879507.1\|1649350_1649503_-	hypothetical protein	NA	NA	NA	NA
WP_000813488.1\|1649505_1650891_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000985015.1\|1650919_1651306_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|1651321_1651636_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000683374.1\|1652038_1652245_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_000013400.1\|1652285_1654520_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.3e-95	35.0
WP_000156042.1\|1654532_1654949_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_000804611.1\|1655112_1656117_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000715537.1\|1656200_1656569_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_000039152.1\|1656659_1659443_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.1e-20	23.1
1658972:1658988	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2009632 : 2024196

Streptococcus_phage(66.67%)

integrase

attL 2007667:2007686|attR 2021599:2021618

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2007667:2007686	attL	NA	NA	NA	NA
WP_000661535.1\|2009632_2010121_-	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.2e-46	56.2
WP_001258774.1\|2010205_2010811_-	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	7.0e-39	46.8
WP_000694577.1\|2010994_2011168_-	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	1.9e-10	59.6
WP_000838178.1\|2011427_2012930_-	DNA primase	Q9AZI5	Lactococcus_phage	2.7e-63	37.2
WP_001029298.1\|2012949_2013807_-	primase C-terminal domain-containing protein	A0A1X9I6L2	Streptococcus_phage	4.3e-119	72.0
WP_000492120.1\|2013807_2014080_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	2.5e-28	69.8
WP_000174504.1\|2014072_2014414_-	hypothetical protein	NA	NA	NA	NA
WP_000206024.1\|2014410_2014773_-	hypothetical protein	NA	NA	NA	NA
WP_001007346.1\|2014784_2014982_-	hypothetical protein	NA	NA	NA	NA
WP_017644535.1\|2014962_2015103_-	hypothetical protein	NA	NA	NA	NA
WP_000877492.1\|2015099_2015432_-	hypothetical protein	NA	NA	NA	NA
WP_000648621.1\|2015686_2015929_-	hypothetical protein	NA	NA	NA	NA
WP_000845516.1\|2015955_2016576_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	1.4e-39	42.3
WP_017644534.1\|2016629_2016791_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000906796.1\|2016956_2017649_+	helix-turn-helix transcriptional regulator	A0A0P0IV68	Lactobacillus_phage	4.3e-08	49.2
WP_001137532.1\|2017753_2017963_+	TM2 domain-containing protein	NA	NA	NA	NA
WP_000350953.1\|2018655_2018997_+	hypothetical protein	A0A1S5SDB5	Streptococcus_phage	2.2e-13	59.7
WP_000429449.1\|2019023_2019989_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	7.1e-86	51.1
WP_011324955.1\|2020327_2021494_+\|integrase	site-specific integrase	A0A1X9I5Y5	Streptococcus_phage	3.3e-154	70.4
WP_000092759.1\|2021600_2022212_-	30S ribosomal protein S4	NA	NA	NA	NA
2021599:2021618	attR	NA	NA	NA	NA
WP_001278152.1\|2022541_2022829_-	Veg family protein	NA	NA	NA	NA
WP_000852645.1\|2022840_2024196_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.2e-152	62.6

DBSCAN-SWA_7

2032516 : 2039720

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042661.1\|2032516_2033221_-	transglycosylase SLT domain-containing protein	A0A2H4J6C5	uncultured_Caudovirales_phage	3.2e-27	56.6
WP_000029067.1\|2033326_2033866_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	3.0e-17	46.4
WP_000359358.1\|2034081_2034876_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000510606.1\|2034868_2035711_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	2.0e-15	28.5
WP_000181757.1\|2035686_2036526_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000239224.1\|2036525_2037068_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000217765.1\|2037190_2038474_-	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	1.6e-05	23.6
WP_000706190.1\|2038475_2039720_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.7e-87	41.5

Anti-CRISPR protein detection

Acr_ID: NZ_LS483342.1|WP_000384271.1|1811731_1812058_-|replication-initiator-protein-A

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_LS483342.1|WP_000384271.1|1811731_1812058_-|replication-initiator-protein-A

1811731_1812058_-

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	1.0	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483342

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information