CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483344	Streptococcus pyogenes strain NCTC12840 chromosome 1	3 crisprs	cas3,cas5,cas8c,cas7,cas4,cas2,csm6,DinG,DEDDh,csa3	2	9	8	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483344_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483344_1

279198-279428

TypeI

I-C

Consensus_repeat	Method
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	PILER-CR
GTCTCACCCTTCATGGGTGAGTGGATTGAAA	CRISPRCasFinder
GTCTCACCCTTCATGGGTGAGTGGATTGAAATA	CRT

3 spacers

cas2,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_LS483344_1

>merge|NZ_LS483344|1|279198-279428|PILER-CR,CRISPRCasFinder,CRT
GTCTCGCCCTTCATGGGTGAGTGGATTGAAATTTTGTTGATAATAACTTCGTCTTCGACGCGACCGTCTCACCCTTTATGGGTGAGTGGATTGAAATAGTCCCTCTTGAGGCAATCTGGTGACAGTATCATGTCTCACCCTTCATGGGTGAGTGGATTGAAATAATGTTCATTTTTACCTCGCATTTAACTTACTCTCGTCTCACCCTTCATGGGTGAGTGGATTGAAAGA

>NZ_LS483344|1|1|279198-279427|PILER-CR
GTCTCGCCCTTCATGGGTGAGTGGATTGAAAT	TTTGTTGATAATAACTTCGTCTTCGACGCGACC
GTCTCACCCTTTATGGGTGAGTGGATTGAAAT	AGTCCCTCTTGAGGCAATCTGGTGACAGTATCAT
GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	AATGTTCATTTTTACCTCGCATTTAACTTACTCTC
GTCTCACCCTTCATGGGTGAGTGGATTGAAAG

>NZ_LS483344|1|1|279198-279426|CRISPRCasFinder
GTCTCGCCCTTCATGGGTGAGTGGATTGAAA	TTTTGTTGATAATAACTTCGTCTTCGACGCGACC
GTCTCACCCTTTATGGGTGAGTGGATTGAAA	TAGTCCCTCTTGAGGCAATCTGGTGACAGTATCAT
GTCTCACCCTTCATGGGTGAGTGGATTGAAA	TAATGTTCATTTTTACCTCGCATTTAACTTACTCTC
GTCTCACCCTTCATGGGTGAGTGGATTGAAA

>NZ_LS483344|1|1|279198-279428|CRT
GTCTCGCCCTTCATGGGTGAGTGGATTGAAATT	TTGTTGATAATAACTTCGTCTTCGACGCGACC
GTCTCACCCTTTATGGGTGAGTGGATTGAAATA	GTCCCTCTTGAGGCAATCTGGTGACAGTATCAT
GTCTCACCCTTCATGGGTGAGTGGATTGAAATA	ATGTTCATTTTTACCTCGCATTTAACTTACTCTC
GTCTCACCCTTCATGGGTGAGTGGATTGAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483344.1\|WP_003060901.1\|277059_277734_+\|CRISPR-associated-protein-Cas4	cas4	COG1468_cas4_CAS-I-A:CAS-I-B:CAS-I-C:CAS-I-D:CAS-II-B	gnl\|CDD\|224385
NZ_LS483344.1\|WP_002994841.1\|279586_280297_+\|thiol-disulfide-oxidoreductase-associated-membrane-protein-CcdA2	unknown	unknown	gnl\|CDD\|223856
NZ_LS483344.1\|WP_111677376.1\|268235_270887_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_LS483344.1\|WP_010922512.1\|273581_274310_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_LS483344.1\|WP_002983789.1\|285814_286531_+\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
NZ_LS483344.1\|WP_014407709.1\|280309_280933_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_LS483344.1\|WP_002983792.1\|286597_287071_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
NZ_LS483344.1\|WP_111677378.1\|266318_266573_+\|DUF1912-family-protein	unknown	unknown	gnl\|CDD\|286073
NZ_LS483344.1\|WP_002983803.1\|288166_289402_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_LS483344.1\|WP_111677372.1\|282169_282910_+\|response-regulator	unknown	unknown	gnl\|CDD\|227095
NZ_LS483344.1\|WP_002989044.1\|278755_279049_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|224262
NZ_LS483344.1\|WP_002983795.1\|287212_287893_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_LS483344.1\|WP_002989018.1\|266593_266989_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181104
NZ_LS483344.1\|WP_111677370.1\|284712_285792_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_LS483344.1\|WP_172448823.1\|267312_267456_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379112
NZ_LS483344.1\|WP_111677377.1\|267673_268222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483344.1\|WP_111677371.1\|282906_284640_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_LS483344.1\|WP_111677375.1\|274309_276205_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|273839
NZ_LS483344.1\|WP_111677373.1\|280975_282082_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_LS483344.1\|WP_111677374.1\|276209_277058_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175

Protein	Function_ID	Function_description	E-value
NZ_LS483344.1\|WP_003060901.1\|277059_277734_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.18604e-43
NZ_LS483344.1\|WP_002994841.1\|279586_280297_+\|thiol-disulfide-oxidoreductase-associated-membrane-protein-CcdA2	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	4.54755e-43
NZ_LS483344.1\|WP_111677376.1\|268235_270887_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_LS483344.1\|WP_010922512.1\|273581_274310_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	3.32713e-117
NZ_LS483344.1\|WP_002983789.1\|285814_286531_+\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	1.24939e-103
NZ_LS483344.1\|WP_014407709.1\|280309_280933_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.12746e-34
NZ_LS483344.1\|WP_002983792.1\|286597_287071_-\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	2.23847e-66
NZ_LS483344.1\|WP_111677378.1\|266318_266573_+\|DUF1912-family-protein	gnl\|CDD\|286073	pfam08930, DUF1912, Domain of unknown function (DUF1912). This domain has no known function. It is found in various Streptococcal proteins.	6.66971e-46
NZ_LS483344.1\|WP_002983803.1\|288166_289402_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_LS483344.1\|WP_111677372.1\|282169_282910_+\|response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	2.46705e-83
NZ_LS483344.1\|WP_002989044.1\|278755_279049_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	1.60225e-34
NZ_LS483344.1\|WP_002983795.1\|287212_287893_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	5.46736e-40
NZ_LS483344.1\|WP_002989018.1\|266593_266989_+\|hypothetical-protein	gnl\|CDD\|181104	PRK07758, PRK07758, hypothetical protein; Provisional.	0.000151325
NZ_LS483344.1\|WP_111677370.1\|284712_285792_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.05813e-33
NZ_LS483344.1\|WP_172448823.1\|267312_267456_+\|hypothetical-protein	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	0.00795303
NZ_LS483344.1\|WP_111677371.1\|282906_284640_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.90982e-64
NZ_LS483344.1\|WP_111677375.1\|274309_276205_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|273839	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. We designate this family Csd1 (CRISPR/Cas Subtype DVULG protein 1). The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria. In a few species (Xanthomonas axonopodis pv. citri str. 306 and Streptococcus mutans UA159), homology to this protein family is split across two tandem genes; the trusted cutoff to this family is set low enough to capture at least the longer of the two.	0
NZ_LS483344.1\|WP_111677373.1\|280975_282082_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	1.02229e-162
NZ_LS483344.1\|WP_111677374.1\|276209_277058_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	1.21991e-159

>NZ_LS483344.1|WP_002989044.1|278755_279049_+|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTETPAGRKRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVDIKHRLTQIIDEKTDSIRFYLLGKNWQRRVETLGRSDSYDPDKGVLLL
>NZ_LS483344.1|WP_003060901.1|277059_277734_+|CRISPR-associated-protein-Cas4
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQVLHTKADNPYIKEKRKELLVSRAMPISSAELGLSGIMDVVEFYKDDQGVSLRGKRGKWLPKVVEYKRGKPKKDTRDIVQLVAQTMCLEETLDCDINEGCLYYHSVNQRVIVPMTSALRQEVKELAAEMHEVYQSQMLPKAAYFKNCQLCSLVDICKPRLSKKTRSVSRYINEAMTSEEMDL
>NZ_LS483344.1|WP_111677374.1|276209_277058_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLEHKIDFMVTLEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRNRLQDMGKPIFVQANERIEDDFRSLEKRFSQHFTAKTPDKEIEEKANALWFDVRAFGQVFTYLKKSIGVRGPVSISMAKSLEPIVISSLQITRSTNGMEAKNNSGRSSDTMGTKHFVDYGVYVLKGSINAYFAEKTGFSQEDAEAIKEVLVSLFENDASSARPEGSMRVCEAFWFTHSSKLGNVSSARVFDLLEYNQSIEEKSTYDAYQIHLNQEKLAKYEAKGLTLEILEGL
>NZ_LS483344.1|WP_111677375.1|274309_276205_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKTYEKAELADLVDHQKRNNEPVLLPIYHTSLKSNGKNIISVKLDKDGQFHKAEFMADKQMIIFPVTADSVARSGSHPAPHPLVDKFSYYSAEMGQTQYDSFHKQLNNWIDYCEEGDVKKFLTFVQQFILKPEFLTLILDSLIAPDYQHNQLKVTYFDATGKEKLIDLSACFLEFSIDQFQGFKNESVSTFKALHQSYISFVEANRENLGICNISGREEQLTDKHRGLMGNAKIISVSNKREAYKGRFREREDVFSVGYETSEKIHLMIKYLLENKNTSTWLGSSQYLINWFSDDLTNDSRLDIVSPIFDDGLEEDDDDDTPPVIALATEDNKRIGKSFIKGQKLFANDATYYVAILNKTSNGRIALKYFRQLQASQLLTNLNKWQETYSWESRSKFGKSSLRTPTFHDILNVSYGVDKDRFLELDNDNFKSDQIQKLVASLIDGKPMPLSIVKKLGNNVKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLDHTNQNRSYLFGRLLAIFELIETLRYGLDGNNDDRITNAERYWTAYTGQPTKLMMLLENKIKPYEEPLKLNRRGSWMKLEKEKEEILELLNPLLETETMEKPLDYRFIFGYYAEKNYYYTKQNTEVTESEE
>NZ_LS483344.1|WP_010922512.1|273581_274310_+|type-I-C-CRISPR-associated-protein-Cas5
MYRSRDFYVRVSGQRALFTNPATKGGSERSSYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLHDYSADLSYVSYLSDVVYLIKFHFVWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRECLGLVDDISQEEYETTVSYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMKNGVITFKAQSECDIVNTLSSYAFKAPEEIKSVNDECMEYDAMEKGEN
>NZ_LS483344.1|WP_111677376.1|268235_270887_+|valine--tRNA-ligase
MSKELSPKYNPAEVEAGRYQKWLDADVFKPSGDQKAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQGISRYDLGRDKFLDKVWEWKDEYATTIKEQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVATTRPETMFGDVAVAVNPEDPRYKDLIGKHVILPIVNKLIPIVGDEHADPEFGTGVVKITPAHDPNDFEVGQRHNLPQVNVMNDDGTMNELAGDFAGMDRFEARQATVAKLEELGALVNIEKRVHSVGHSERSGAVVEPRLSTQWFVKMDELAKQAMDNQETDDRVDFYPPRFNDTFLQWMENVHDWVISRQLWWGHQIPAWYNAEGEIYVGEEAPEGDGWTQDEDVLDTWFSSALWPFSTMGWPDTDVEDFKRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFQNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADSLRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLEEAESNVAKVAASEAGNVTDQWILHNLNETIAKVTENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVITRSVLLYTLDKILRLLHPIMPFVTEEIYAQYAQGSIVTVDYPVVRPAFENEAAHKGVESLKDLIRAVRNARAEVNAAPSKPITILVKTADSELEDFFTSNVNYIKRFTNPEKLEISSAIAAPELAMTSIITGAEIYLPLADLLNVEEELARLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQAKYDATQERIAEMQKIKS
>NZ_LS483344.1|WP_111677377.1|267673_268222_+|hypothetical-protein
MSKMKTMLKSEKRNSASRYYITKADKMSNVINSGLNRISKEAKRNLAYSLRYLEFLQLQLDELVLDDMMIKMIHKNFIITSLAIIELIMQDSTNANVYGEKLLIEFRNKNLFNLKDEDFEKLDKFRKLRNRVHLQLRFEDDQTDWFAFEKCDYLDMKKLLYQILTSEKMFNKPYRTYIDFLK
>NZ_LS483344.1|WP_172448823.1|267312_267456_+|hypothetical-protein
METERLLLRQRKLEDAEAIFAFAKLAEVSYPAGFPPVKSLADESAYL
>NZ_LS483344.1|WP_002989018.1|266593_266989_+|hypothetical-protein
MAKQKNRKKALKLEMKRNGLLKKAGQVFDKAVESVETAVDKTISAGKNLVEKGSQTVENLTASKERLTLDEFAGQPVVAGIRSDLVETLYAEGIHSAQAFKEWTEKDLLALKGIGPATVKKLVENGASFKK
>NZ_LS483344.1|WP_111677378.1|266318_266573_+|DUF1912-family-protein
MSYEKEFLKDFEDWVKTQIQVNQLAMATSQEVAQEDGDERAKYAFIRYESKLDAYEFLLGKFDNYKNGKAFHDIPDELFGARHY
>NZ_LS483344.1|WP_002994841.1|279586_280297_+|thiol-disulfide-oxidoreductase-associated-membrane-protein-CcdA2
MTLSLVLMVSVFGAGLLSFFSPCIFPVLPVYLGILLDADDSKTITIFGKKLYWYGIVKTLAFIFGLSTIFVILGYGAGFLGNILYAVWFRYLLGALVIILGIHQMGLITIKSLQFQKSLTFHNNKNRNGLFNAFILGLTFSFGWTPCVGPVLSSVLALVASGGNGAWQGGVLMIIYTLGLGIPFLLISFASGIVLKQFNKLKPHMLLLKKVGGVLIIVMGILLMTGTLNNLAQLFG
>NZ_LS483344.1|WP_014407709.1|280309_280933_+|TlpA-family-protein-disulfide-reductase
MKKGLLVTTGLACLGLLTACSTQDNMAKKEITQDKMSMAAKKKDKMSTSKDKSMMADKSSDKKMTNDGPMAPDFELKGIDGKTYRLSEFKGKKVYLKFWASWCSICLSTLADTEDLAKMSDKDYVVLTVISPGHQGEKSEADFTKWFQGTDYKDLPVLLDPDGKLLEAYGVRSYPTEVFIGSDGVLAKKHIGYAKKSDIKKTLKGIH
>NZ_LS483344.1|WP_111677373.1|280975_282082_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MEHKWKLWLFIVGVVLLIGGASVLIQKGQAKAFSQGKPQLPAKKVKSTKVDPNAPVDQKVIYLAGGCFWGVEEYFSQVDGVLDAVSGYANGRGDATNYQLIHQTGHAETVEVTYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKKNPNGYCHIDINQATYPVIDESKYPKPSATEIKAKLSADEYRVTQKNETEKAFSNRYWDSFDAGIYVDVVTGEPLFSSKDKFESGCGWPSFSRPVSPDVIRYKEDKSFNMTRTEVRSRSGDSHLGHVFTDGPKDQGGLRYCINSLSITFIPKADMEAKGYGYLLSSVE
>NZ_LS483344.1|WP_111677372.1|282169_282910_+|response-regulator
MYSLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLSGIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLTLKSLAQQLGFSPNYLSVLIKKELGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQYKKGGQA
>NZ_LS483344.1|WP_111677371.1|282906_284640_+|sensor-histidine-kinase
MKRYPLLVQLISYVFVIVIALITTLGLLYYQTSSRNIRQLIERDTRQSIRQSSQFIDAYIKPLKETTSVLAKNSEIQDFASQIHQENDKQVLQLMKMVLATNSDLQAAVLVTKDGRTVSTNPQLTMKTSSDMMAETWYKAAIDRQAMPVLTPARQLSLSSKKEWVVSVTQEVVDAAGHNLGMLRLDIAYPTIKASLDQLQLGRQGFAFIVNDKHEFVYHPKKSVYSSSKEMAAMKPYLAIQNGYTKDKTFFVYQKLIPNSQWTLVGVASLDQLHRVQRQIFWSFLGMGLLACLICGLTTILVLRKWIRPIQQLQQVILAIQKGDRQLRAQETGSPELTDLAQQFNALLDQIDSLMVAVADKEKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKPLAKYFRLALNQGNEYIRLADELDHVSQYLFIQKQRYGDKLSYEVQGLDVYADFVIPKLILQPLVENAIYHGIKEVDRKGMIKVTVSDTAQHLMLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHYGEGYHMTIHSQSDHFTEIQLSLPKMHELMADDTQENE
>NZ_LS483344.1|WP_111677370.1|284712_285792_+|MmcQ/YjbR-family-DNA-binding-protein
MSLATDYFSRQTPIVEKLVAYGFEKRDNGYFYNERFMEGEFEAQLRIDEAGNIWDRVIDCDLEEDYLPLQQAAWQGTYTGQVRAAYLELLERLSVACFEVTPFQSMQANRLAKHITKEWSDPMDYPFEKHPDLATYRVEGKWYAMIFSLLADKLDQIPERLVGQTCEVMTVKVNPKDLPQLLQQEGIYPAYHMSKKNWISIILDDKVTDDKLWTLVTQSRQLVNPNGLSNPNGPDYWVIPANLKYYDIDAEFAANDVILWTQKAGIAVGDYVLIYMTAPVKSIRYACQVLETDIPNEGYRKNPNIDKLMRLRKCQQYKDGLLSFDLMKKHGVAAVRGPRRLSPQLIAFLKEKEYLKENN
>NZ_LS483344.1|WP_002983789.1|285814_286531_+|B3/4-domain-containing-protein
MVEFVADQSFWELFPDAKLGVVLLKDVQNQAESPEDVKQLLADSHELAKAYLTADNFSDNQVVQVYRKAYQHFKTKKGARSSIEALLKRVSNSQSIPSINPLVDIYNAASLRFGLPVGAEDSDSFIGDLRLTTTDGGDDFYLIGDADNNPTLPNELCYKDDIGAVCRCLNWRDGERTMVTEHTKNAFLIIEALDQEGQNRLQEALEFIEGSAKMYLHATPSLHVLDKDNPHVPLFTEN
>NZ_LS483344.1|WP_002983792.1|286597_287071_-|arginine-repressor
MNKKETRHQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDTHYEALAISQTRWEHRLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIVATICGDDTCLIVCEDNEQAKACYETLSHYTPPFFFSNK
>NZ_LS483344.1|WP_002983795.1|287212_287893_+|Crp/Fnr-family-transcriptional-regulator
MIRREDYQYLRKLNDFRYFSIEQFDKIVGQMEFRKAKKDHILFFEGDKRDKLFLVTSGYFKVEQSDQSGTFMYTDFIRHGTIFPYGGLFTDDYYHFSVVAMTDVTYFYFPVDLFEDYSLENRLQMKHLYSKMSKLLELHELRVRNLITSSASSRVIQSLAILLVEMGKDSDTLPFQLTTTDIAQISGTTRETVSHVLRDLKKQELITIKGKYLTYLDKDYFLQYTK
>NZ_LS483344.1|WP_002983803.1|288166_289402_+|arginine-deiminase
MTAQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI

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Crispr_ID: NZ_LS483344_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483344_2

512508-512608

Orphan

Consensus_repeat	Method
TATAATTAGACTATACCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483344_2

>merge|NZ_LS483344|2|512508-512608|CRISPRCasFinder
TATAATTAGACTATACCAATTTTATGTTTGACAAGACATTGTGGATATTATATACTGTAAACATAATGTTTTTATCGGTATAATTAGACTATACCAATTAT

>NZ_LS483344|2|2|512508-512608|CRISPRCasFinder
TATAATTAGACTATACCAATTTT	ATGTTTGACAAGACATTGTGGATATTATATACTGTAAACATAATGTTTTTATCGG
TATAATTAGACTATACCAATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483344.1\|WP_002984469.1\|524643_524892_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_LS483344.1\|WP_038433358.1\|520110_521433_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_LS483344.1\|WP_111677291.1\|503890_504676_-\|ABC-transporter-permease	unknown	unknown	unknown
NZ_LS483344.1\|WP_002984460.1\|516407_517244_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_LS483344.1\|WP_111677288.1\|518755_519991_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_LS483344.1\|WP_011017966.1\|500627_501062_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483344.1\|WP_111677287.1\|521962_524281_+\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_LS483344.1\|WP_002984447.1\|510206_511709_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_LS483344.1\|WP_002984426.1\|502370_502559_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483344.1\|WP_111677289.1\|517612_518386_+\|CAMP-factor-pore-forming-toxin-Cfa	unknown	unknown	gnl\|CDD\|369335
NZ_LS483344.1\|WP_002984457.1\|515762_516392_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LS483344.1\|WP_002984444.1\|509130_510144_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_LS483344.1\|WP_111677290.1\|505940_509051_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|180917
NZ_LS483344.1\|WP_002989617.1\|505384_505756_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_LS483344.1\|WP_002989607.1\|503149_503764_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_LS483344.1\|WP_002984449.1\|511926_512484_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_LS483344.1\|WP_172451419.1\|501332_502133_-\|streptodornase-Sda3	unknown	unknown	gnl\|CDD\|372824
NZ_LS483344.1\|WP_002984455.1\|515111_515753_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LS483344.1\|WP_011284834.1\|512659_514474_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LS483344.1\|WP_011528695.1\|514669_515005_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380

Protein	Function_ID	Function_description	E-value
NZ_LS483344.1\|WP_002984469.1\|524643_524892_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.43969e-13
NZ_LS483344.1\|WP_038433358.1\|520110_521433_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NZ_LS483344.1\|WP_002984455.1\|515111_515753_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.36474e-71
NZ_LS483344.1\|WP_002984460.1\|516407_517244_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.79673e-109
NZ_LS483344.1\|WP_111677287.1\|521962_524281_+\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LS483344.1\|WP_002984447.1\|510206_511709_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_LS483344.1\|WP_111677288.1\|518755_519991_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.35889e-95
NZ_LS483344.1\|WP_111677289.1\|517612_518386_+\|CAMP-factor-pore-forming-toxin-Cfa	gnl\|CDD\|369335	pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of several bacterial CAMP factor (Cfa) proteins which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin).	2.99641e-97
NZ_LS483344.1\|WP_002984457.1\|515762_516392_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.89978e-111
NZ_LS483344.1\|WP_002984444.1\|509130_510144_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_LS483344.1\|WP_111677290.1\|505940_509051_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|180917	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.	0
NZ_LS483344.1\|WP_002989617.1\|505384_505756_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.0536e-49
NZ_LS483344.1\|WP_002989607.1\|503149_503764_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.14841e-31
NZ_LS483344.1\|WP_002984449.1\|511926_512484_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.3728e-38
NZ_LS483344.1\|WP_172451419.1\|501332_502133_-\|streptodornase-Sda3	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	7.25745e-26
NZ_LS483344.1\|WP_011284834.1\|512659_514474_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LS483344.1\|WP_011528695.1\|514669_515005_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.87366e-64

>NZ_LS483344.1|WP_002984449.1|511926_512484_+|signal-peptidase-I
MVKRDFIRNILLLLIVIIGAILLRIFVFSTFKVSPETANTYLKSGDLVTIKKNIQPKYKDFVVYRVGKKDYVSRVIAVEGDSVTYMDDIFYLNNMVESQAYLEKMKAHYLNHAPFGTLYTDDFTVATITADKYQKVPKGKYLLLNDNRKNTNDSRRFGLINASQIKGLVTFRVLPLSDFGFVEVE
>NZ_LS483344.1|WP_002984447.1|510206_511709_+|pyruvate-kinase
MNKRVKIVATLGPAVEIRGGKKYGEDGYWAGQLDVEESAKKIAELIEAGANVFRFNFSHGDHKEQGDRMATVRLAEEIARQKVGFLLDTKGPEMRTELFADDAKEFSYVTGEKIRVATTQGIQSTRDVIALNVAGSLDIYDEVEVGHTILIDDGKLGLKVIDKDIATRQFIVEVENDGIIAKQKGVNIPNTKIPFPALAERDNADIRFGLEQGLNFIAISFVRTAKDVEEVREICRETGNDHVQLFAKIENQQGIDNLDEIIEAADGIMIARGDMGIEVPFEMVPVFQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGTDATMLSGESANGKYPVESVRTMATIDRNAQTLLNEYGRLDSSAFPRTNKTDVIASAVKDATHSMDIKLVVTITETGNTARAISKFRPDADILAVTFDEKVQRALMINWGVIPVLAEKPASTDDMFEVAERVAVEAGLVQSGDNIVIVAGVPVGTGGTNTMRVRTVK
>NZ_LS483344.1|WP_002984444.1|509130_510144_+|6-phosphofructokinase
MKRIAVLTSGGDAPGMNAAIRAVVRKAISEGMEVYGINRGYAGMVDGDIFPLGSKEVGDKISRGGTFLYSARYPEFAQLEGQLAGIEQLKKHGIEGVVVIGGDGSYHGAMRLTEHGFPAVGIPGTIDNDIAGTDYTIGFDTAVNTAVEAIDKLRDTSSSHGRTFVVEVMGRNAGDIALWAGIASGADQIIVPEEEFDIEKVASTIQYDFEHKGKNHHIIVLAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDRVIASWMGSHAVELLKEGKGGLAVGIHNEELVESPILGTAEEGALFSLTEEGKIIVNNPHKARLDFAALNRSLSQ
>NZ_LS483344.1|WP_111677290.1|505940_509051_+|DNA-polymerase-III-subunit-alpha
MFAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPVLGLEVEILYQERQVLLNLIAQNTQGYHQLLKISTAKMSGKLHMDYLCQHLKGIAVIIPSKGWSDTLVVPFDYYIGVDQYTDLSHMDSKRQLIPLRTVRYFAQDDMETLHMLHAIRDNLSLAETPVVESDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPHFNRDKSAKQELQDLTEAGLKEKGLWKEPYQSRLLHELIIISDMGFDDYFLIVWDLLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKSGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMMNYSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRDFAYWIIEQRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDYFEPNRKKILDNLDGLLVFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGMSKHPLIDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVENHQFDSQISEILGAFPGTTPVVIHYQKNKETIALTKIQVHVTENLKEKLRPFVLKTVFR
>NZ_LS483344.1|WP_002989617.1|505384_505756_-|GntR-family-transcriptional-regulator
MSWKFDEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ
>NZ_LS483344.1|WP_111677291.1|503890_504676_-|ABC-transporter-permease
MFGKLLKYEFRSIGKWYFALNAFVIAIAAILSFTIKLFAQSNSDGLFGVLTNKMLPLTLGLTFGSLIAGSLLSTLLIIIKRFSKSVFGREGYLTLTLPVNSHQIILSKLLASFICSVFNTITLAFAIAIVIVPMFNVNELLEGFFNSFKMDYFINMLTVLAYVLLSTFTSILLIYLSISIGQLFSNRRGLMAFIAYFILVILISVAATYVHNHIFNINTSADSFPFTEQKTIYLLILEQFIEMIMFYLATNFIIKNKLNLQ
>NZ_LS483344.1|WP_002989607.1|503149_503764_+|TVP38/TMEM64-family-protein
MTKRNSKAYILWQKIIKILGIIALIGTFFLAFWLYRLGILNDSNALKDLVQRYRLWGPFVFIVVQIIQIVFPVIPGGLTTVAGFLIFGPVTGFIYNYVGIIIGSIVLFLLVKTYGRKFILLFVNDKTFYKYERRLETPGYEKLFIFCMASPVSPADIMVMITGLTDMSLKRFVTILLITKPISIIGYSYLFIFGKDVISWFLQH
>NZ_LS483344.1|WP_002984426.1|502370_502559_+|hypothetical-protein
MLTYDEFKQAIDRGYITGDTVMIVRKNGQIFDYVLPHEKVKNGEVVTEEIVEEVMVELDYIK
>NZ_LS483344.1|WP_172451419.1|501332_502133_-|streptodornase-Sda3
MSKSNRRTWQGLVVILIAILTTFTTSTVTAARKIRNFPDTTEILLGTKATETPGILPFTGSYQLVLGDLDNLQRPTFAHIQLKDQDEPNIKRKGLKFNPPGWHNYKLTDANGKTTWLMDRGHLVGYQFSGLNDEPKNLVTMTKYLNTGFSDKNPLGMLYYENRLDSWLALHPNFWLDYKVTPVYHKNELVPRQVVLQYVGIDENRDLLQIKLGSEKESVDNFGVTSVTLDNVSPLAELDYQTGMMLDSTQNEEDSNLETEEFEEAA
>NZ_LS483344.1|WP_011017966.1|500627_501062_-|hypothetical-protein
MKRSKKASLLSVIVGMALAVIPIYIVNYDNELIVLLMSIFFNGIIVSAFELIKTYDGLQEEYKKLTVDRWKNTILLAFNSLYFASILTNSLSNNLSTILSTNRSDKVSAIFLTGCSILALLPFLLHRLIKREIEIENERKKLKK
>NZ_LS483344.1|WP_011284834.1|512659_514474_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVANANQTNLIKSVGRIADLRAKIGIDVAGSTGIGHTRWATHGQSTEDNAHPHTSQTGRFVLVHNGVIENYLHIKTEFLAGHDFKGQTDTEIAVHLIGKFVEEDKLSVLEAFKKALSIIEGSYAFALMDSQATDTIYVAKNKSPLLIGLGEGYNMVCSDAMAMIRETSEFMEIHDKELVILTKDKVTVTDYDGKELIRDSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRQLISTYADETGNVQVDPAIITSIQEADRLYILAAGTSYHAGFATKNMLEQLTDTPVELGVASEWGYHMPLLSKKPMFILLSQSGETADSRQVLVKANAMGIPSLTVTNVPGSTLSREATYTMLIHAGPEIAVASTKAYTAQIAALAFLAKAVGEANGKQEALDFNLVHELSLVAQSIEATLSEKDLVAEKVQALLATTRNAFYIGRGNDYYVAMEAALKLKEISYIQCEGFAAGELKHGTISLIEEDTPVIALISSSQLVASHTRGNIQEVAARGAHVLTVVEEGLDREGDDIIVNKVHPFLAPIAMVIPTQLIAYYASLQRGLDVDKPRNLAKAVTVE
>NZ_LS483344.1|WP_011528695.1|514669_515005_+|alkylphosphonate-utilization-protein
MSLPNCLQCQSEYVYEDGLLLICPMCAFEWTPGEEATEEEGLVALDSNGVRLSDGDTITVIKDLKVKGAPKDLKQGTRVKNIRLVEGDHNIDCKIDGFGAMKLKSEFVKKI
>NZ_LS483344.1|WP_002984455.1|515111_515753_+|amino-acid-ABC-transporter-permease
MTYIQQVLPSLLDGALVTLQVFFIVIILSIPLGAILAFLMKVPFKPLQWFLTLYVWMMRGTPLLLQLIFFYYVLPSVGISFDRMPAAILAFTLNYAAYFAEIFRGGIEAIPKGQYEAAKVLKLKPLQTIRYIILPQVFKIVLPSVFNEVINLVKDSSLVYVLGVGDLLLASKTAANRDATLAPMFIAGLIYLLLIGLVTIISKQVEKRFNYYQ
>NZ_LS483344.1|WP_002984457.1|515762_516392_+|amino-acid-ABC-transporter-ATP-binding-protein
MLELKNISKQFGQKTIFDGFNLTVQDGEVLSLVGPSGGGKTTLLRMLAGLESIDSGQVFYNGEDVGIDHLENRNLLGFVFQDFQLFPHLTVLDNLTLSPTITMGKQKADAKEKALDLLARLGLKEHAQVYPYSLSGGQKQRVALARAMMIDPQIIGYDEPTSALDPELRQTVEALIVQNREMGITQIVVTHDLVFAEAISDRIIRVNPK
>NZ_LS483344.1|WP_002984460.1|516407_517244_+|amino-acid-ABC-transporter-substrate-binding-protein
MIIKKRTVAILAIASSFFLVACQATKSLKSGDAWGVYQKQKSITVGFDNTFVPMGYKDESGKCKGFDIDLAKEVFHQYGLKVNFQAINWDMKEAELNNGKIDVIWNGYSITKERQNKVAFTDSYMRNEQIIVVKKRSDIKTISDMKHKVLGAQSASSGYDSLLRTPKLLKDFIKNKDANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMIPTTFENEAFSVGLRKEDKTLQAKINRAFRVLYQNGKFQAISEKWFGDDVATANIKS
>NZ_LS483344.1|WP_111677289.1|517612_518386_+|CAMP-factor-pore-forming-toxin-Cfa
MKPKHLLCLSTVVAGLALFSTMTHSVLADDASNPDTILMNNNQANLQRDALVQKLDEGHQQLEAIKHEAKGTDIEATVNKAIDAVDHMKSSIRFNTETIYDFSSIGARVEALSDAIKAIVFSTTQLTHKVEKAHTDMGFAITKLVIRIIDPFASVDAIKDQVQEIKALEEKVINYPDLQPTGRATIYTKAKLNKAIWNTRLERDKKVLGIKPFGVYNRLNKAITHAVGVQLNPTTTVQQVDDEVIAVQNALETALKS
>NZ_LS483344.1|WP_111677288.1|518755_519991_-|cation-diffusion-facilitator-family-transporter
MTQDPIANLKLARKGPIVSIIVYLLLSAAKLLAGYLLNASSLIADGFNNLSDIVGNVALLIGLHLASQPADANHKFGHWKIEDLSSLVTSFIMFLVGFQVLIHTIKSIFSGQQVDIDPLGAIVGIVSAFVMLGVYVFNKRLSKRVKSSALVAASKDNLADAVTSIGTSIAIIAASLHLPVIDHIAAMIITFFILKTAFDIFMESSFSLSDGFDSRHLKKYEKAILEIPKIVAVKSQRARTYGSNVYLDIVLEMNPDLSVYESHSITEKVEQLLSDQFSIYDIDIHVEPAMIPEEEIFDNVAKKLYRYEKLILSKVPDYDHYIAKSFQLIDANGQTVNYEQFLNQEIYYPSNFNHFQIESISQKTMLVTYQLNGNQHTSIWRRHESWSLLFHQITPIAKRQLHHTHYRIVKM
>NZ_LS483344.1|WP_038433358.1|520110_521433_-|sodium:alanine-symporter-family-protein
MIALVKLIDNLVWGPPLLILLVGTGIYLTSRLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDASGHISGGPMYYIVNGMGTKWKPLAILFASSGILVALFGIGTFAQVNSITSSLGHSFGLSPQMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVFQSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFVLMVGLGGFLKLELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK
>NZ_LS483344.1|WP_111677287.1|521962_524281_+|DNA-helicase-PcrA
MNPLLNGMNDRQAQAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKQLNIDPKKWNERSILGTISNAKNDLLDEKGYEAQAADMYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLLDANPDVLAYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNRRPKKLWTQNADGEQLVYYRANDERDEAVFVASTISNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDLIAYLTIVANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAIMDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKNFDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEASEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRASEDPDELEEERRLAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVRFSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLPFGSNSSVEEVTWQIGDIAHHKKWGDGTVLEVSGSGKTMELKIKFPEVGLKKLLASVAPIEKK
>NZ_LS483344.1|WP_002984469.1|524643_524892_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGLIWTLIVGALIGVIAGALTKKGGSMGWIANIAAGLVGSSVGQALLGSWGPSLAGMSLIPSVIGAVIVVMITSFVLNKTNN

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Crispr_ID: NZ_LS483344_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483344_3

1463637-1463743

Orphan

Consensus_repeat	Method
GGGACTTCTTCACCATCTAACTCTGGCATTAATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483344_3

>merge|NZ_LS483344|3|1463637-1463743|CRISPRCasFinder
GGGACTTCTTCACCATCTAACTCTGGCATTAATGGAGGAAGCGCAGGTTCTAAGCTCTCGCTTGGAACTTCTGGGACTTCTTCACCATCTAGCTCTGGCATTAATGG

>NZ_LS483344|3|3|1463637-1463743|CRISPRCasFinder
GGGACTTCTTCACCATCTAACTCTGGCATTAATGG	AGGAAGCGCAGGTTCTAAGCTCTCGCTTGGAACTTCT
GGGACTTCTTCACCATCTAGCTCTGGCATTAATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483344.1\|WP_111677010.1\|1457229_1458087_-\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NZ_LS483344.1\|WP_172448825.1\|1470885_1471179_-\|DUF4651-domain-containing-protein	unknown	unknown	gnl\|CDD\|339494
NZ_LS483344.1\|WP_111677003.1\|1466625_1467498_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_LS483344.1\|WP_111677004.1\|1464985_1466479_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|285470
NZ_LS483344.1\|WP_030126456.1\|1469927_1470554_-\|DUF4479-and-tRNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|239196
NZ_LS483344.1\|WP_012560390.1\|1471634_1472702_+\|glutamyl-aminopeptidase	unknown	unknown	gnl\|CDD\|132151
NZ_LS483344.1\|WP_002986504.1\|1468481_1469123_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|224345
NZ_LS483344.1\|WP_111677012.1\|1448526_1449438_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LS483344.1\|WP_111677011.1\|1451265_1451925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483344.1\|WP_003053955.1\|1469381_1469777_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180914
NZ_LS483344.1\|WP_111677008.1\|1458953_1459886_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|380024
NZ_LS483344.1\|WP_002994067.1\|1467484_1468462_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_LS483344.1\|WP_111677569.1\|1452011_1457111_-\|fibrinogen-binding-adhesin-SdrG-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|227268
NZ_LS483344.1\|WP_172448857.1\|1458088_1458976_-\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NZ_LS483344.1\|WP_172448826.1\|1449506_1450913_-\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
NZ_LS483344.1\|WP_111677007.1\|1459972_1461688_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	unknown	unknown	gnl\|CDD\|275067
NZ_LS483344.1\|WP_111677013.1\|1447221_1448406_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_LS483344.1\|WP_002992751.1\|1470571_1470889_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_LS483344.1\|WP_111677001.1\|1472749_1473520_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_LS483344.1\|WP_002986455.1\|1446550_1447210_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702

Protein	Function_ID	Function_description	E-value
NZ_LS483344.1\|WP_111677010.1\|1457229_1458087_-\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	8.64825e-77
NZ_LS483344.1\|WP_172448825.1\|1470885_1471179_-\|DUF4651-domain-containing-protein	gnl\|CDD\|339494	pfam15513, DUF4651, Domain of unknown function (DUF4651). family of short, secreted proteins specific to the Streptococcus genus, with distant homologs, not recognized by this HMM, found in other cocci. In all sequenced genomes, proteins from this family appear in a conserved genomic context with an thioredoxin, tRNA synthase and tRNA binding protein, but the functional implication of this is unclear.	2.25289e-28
NZ_LS483344.1\|WP_111677003.1\|1466625_1467498_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	2.80271e-148
NZ_LS483344.1\|WP_111677004.1\|1464985_1466479_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|285470	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain. Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This corresponds to the PRD like region.	3.91449e-61
NZ_LS483344.1\|WP_030126456.1\|1469927_1470554_-\|DUF4479-and-tRNA-binding-domain-containing-protein	gnl\|CDD\|239196	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.	1.03837e-48
NZ_LS483344.1\|WP_012560390.1\|1471634_1472702_+\|glutamyl-aminopeptidase	gnl\|CDD\|132151	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_LS483344.1\|WP_002986504.1\|1468481_1469123_+\|deoxynucleoside-kinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	1.2135e-96
NZ_LS483344.1\|WP_111677012.1\|1448526_1449438_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.0675e-30
NZ_LS483344.1\|WP_003053955.1\|1469381_1469777_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|180914	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional.	1.44411e-89
NZ_LS483344.1\|WP_111677008.1\|1458953_1459886_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	2.0943e-13
NZ_LS483344.1\|WP_002994067.1\|1467484_1468462_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	1.81907e-121
NZ_LS483344.1\|WP_111677569.1\|1452011_1457111_-\|fibrinogen-binding-adhesin-SdrG-C-terminal-domain-containing-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	1.25691e-18
NZ_LS483344.1\|WP_172448857.1\|1458088_1458976_-\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	5.50806e-81
NZ_LS483344.1\|WP_172448826.1\|1449506_1450913_-\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	0
NZ_LS483344.1\|WP_111677007.1\|1459972_1461688_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	gnl\|CDD\|275067	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain. The Streptococcus Pneumoniae pilus backbone protein, RrgB, has three tandem domains with Lys-to-Asn isopeptide bonds, but these three regions are extremely divergent in sequence. This model represents the homology domain family of the D2 domain. It occurs just once in many surface proteins but up to twenty times in some pilin subunit proteins. Three of every four members have the typical Gram-positive C-terminal motif, LPXTG, although in many cases this motif may be involved in pilin subunit cross-linking rather than cell wall attachment. Proteins with this domain include fimbrial proteins with lectin-like adhesion functions, and the majority of characterized members are involved in surface adhesion to host structures.	2.23039e-15
NZ_LS483344.1\|WP_111677013.1\|1447221_1448406_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_LS483344.1\|WP_002992751.1\|1470571_1470889_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	4.4889e-26
NZ_LS483344.1\|WP_111677001.1\|1472749_1473520_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	5.51581e-106
NZ_LS483344.1\|WP_002986455.1\|1446550_1447210_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	4.65529e-110

>NZ_LS483344.1|WP_111677007.1|1459972_1461688_-|SpaH/EbpB-family-LPXTG-anchored-major-pilin
MKLSKKLLYSAVVLATVVGPTVGPVAKFATGMGAVRADESVLARRTVKVQPETTKVIITKLQADEYNEDVLKSNGITNENGLPLSPEEWSQKLGKNVKPLAGVEFIAYKLDGLESELITNVKSQKTVESVDQVLGDKLENRKQVIGQTQVDGTITWNVTKENYGTYFVIESKKPETVSSAVAVPFEITLPMSESKGNGYLTEVNIYPKNVTSNTPKPGKDVENLGTNHSTANIGQEVSWFMKGTVPANMKDYESYVFTDTLDSRLDYVRVDHVKYGVLTLESGDYEVIEPQEGNRILKVKLTQQGIQKVATQYPNRVMLTDEEIKDIAKNTADRPFLEVKFTTRINKDVVLGKPVPNEIKIEFDNTSDKVSNPKPSTSPSDRPDIQTGGKKFKKVSKGDQAPLVGAEFNLLDASGSEIKWTTELMAANQAGIGEGKFVNPQLNKPIVMKSIDGGVFEIRGLSYKIDNPTAKAEELAKVTTGTTYKLKETKAPAGYVLLDQAIDFTVSQTSYNTTPTSIEIDRKDATPDTINNSKRPSIPNTGGIGTAIFVAIGVAIMAFATKEMKRRTEEN
>NZ_LS483344.1|WP_111677008.1|1458953_1459886_-|LPXTG-cell-wall-anchor-domain-containing-protein
MQKLLKYLCSFGLVLGCLLGFHLPVLAQENQAQLTIVHLASRDIDRPNPQLDLAPRSGKPVEGVTYRLYQLKLGQTAQPMSYWEKLSLQELEEQAQAVFEAKTDAQGHAAFVRLPVGIYYGMAVENQQRHAGVAGFLVDLTGDTGYVKTVYPKVILPTGRLYLLKRGLDGQKQKPLAGVSFELYEENGLTPLRVKNGIHSYDMDAQTVLVTDAEGHLDVAGLLAGNYYLKEVATAKGYRLKTDAISFQVQAHQTKTVIVDNHKETPPPVTPWDWFPRTGEAQALTLIVLGLILMLLALFYYQKHRQEGND
>NZ_LS483344.1|WP_172448857.1|1458088_1458976_-|class-C-sortase
MVKRATISMKTSKKKVELRVWLSRLVFLAGFLVLAFPIVSQVLYYQASRANINAFKKTITKIDRAEIKCRLELAKAYNASLSGTSTRATQPVLKDPYSEEQRKAGRAEYARMLEVREQIGHVMIPKINQDLPIYAGSGEDNLQRGVGHLEGTSLPIGGPSTHAVLTAHRGLPTARLFTDLNKLQKGDHFYIEHLGGKLAYQVDDIKMVTPDRLEELSIVPDEDYVTLLTCTPYMINSHRLLVRGKRIPYKESVEHKDQELGQQRQVKVYGFMILGLVLSLFLLWYRKRKKKQKRR
>NZ_LS483344.1|WP_111677010.1|1457229_1458087_-|class-C-sortase
MKQRLNHIYRLIVTNKLRSLLFVLGILVLLFPIVSQVSYYLASHQKINQFEHQAARIDRSAITKRIALAKAYNDAISRHPSLSDPFTSKEKAGLREYARMLEVNEQIGHVAIPKIGVDLPLYAGTSAAVLEKGSGHLEGTSLPIGGKTTHAVLTAHRGLPTARLFTDLDKVKKGDYFYVTNIKETLAYQVDRIIVIDSSQLDAVSIEEGKDYVTLLTCTPYMINSHRLLIRGVRIPISSKQAQKERSARMTSYPYYRWVVYLAIAVFLILVMVLTKYYLKKKITL
>NZ_LS483344.1|WP_111677569.1|1452011_1457111_-|fibrinogen-binding-adhesin-SdrG-C-terminal-domain-containing-protein
MIILLLVLPTGLTAMTVLAEQAKAENLTSVGTSAEKILKKSDLDFEQAISTSGDVLKAGSASWIQLTYNKFNQNLAKQDLFLSLPQGMTIEGISQDQKLDVKTISVPKNLALDEATSTINNTNIITGFEKIGEQEYKLSFAATSKTLNLVFKVKGTSLNEKRELQLSDKQNLNQTSFTKKLGLGIAKSDDRTSANDTTTRPSIQPRAATARETTGNQDISANLTTSNAQLNLEDKDKNNIYDVEAPDSFMFRATLSLLDSRYIVPGNYFELKLSDTIHYNMLNPTDINFPYLTQDGKVIAVPELVQDPPVDGLLRATGKIVRYRFTDQVQGLDSLTMTLNLGHSVNPNVVQNNDKYDFSYQIGGHIIKQSYDVQYGKPKENGNLNVHQRLTYTDSKQNLKASSLIYVNPKQTPQYAGKQTLSILRNPKTYTISEQTVPNLLELNNQTSIKVYKLKDSKGVTDAVNLDKQYLEEVINPIITKSDGKIEVSFNYTQGETSAYVVAVETSLQQEGSQPVFIAQNSNLTSASTRKKVSETDATATVGSGGSASGDQTPKGTFYLNKVDTNHKHLANATFTLSGNTTAGQFLYRTLITDTKEVSFSDLPPGSYLLKETTAPSGYQQITTPWTVTVDDKGKVTVTGNEADTQKVPEEAEVVILWEQIKSKTFRVGDVAFYQDRLKELIASIASPNAKYTLIGYSGRSTQSAQVLFQSKSASEVQAAINSASFLDNLTDSRVAMPYAYQLALQQFQASKAKQKYLLQLTEYPIYNSNNVEKALISNSQATMNSIKKLGVNPYLLVARDPSKDRNKYLDPYSSGASFGTLFAQENIHIAWKNETASTLVSPPYEDYSYSKQLQSIGSAIRQQIPGSILTITNKTSGKFSINKIDETKKGLAGATFTLSKRTTVAEDYQVKGDFTPVSKGTTAGRTTIAFDNLKPGVYDLKETKAPDAYTLDPKTYVVVVQNSGKTTLVEEANFKETDYPMADNTSQFDYPTKDIANEPNKIVFTKIGDGGKSLSGAEFELRKGNEKVQTAKSKDDGQVTFTKLLPGTYEVWETKVADSAYQLPKEAVATFEVKADGTFSEPMGRLFKKNSQQNNRYEIRNDLINKKTGNQKIKVIKKDELTEVPLPNAKFQLEASDGTIYTKTTDVKGEIVFEKLPYGQYILTEIEAPTGYVLDKTPQKINITEVSALETEVVAGRDATQPTVAPAARAALAAPVAEPVTGKNVSDQISIKELDITSSNEATPHNVRPNHGENIVMRADFTIKPGSDIKAGDFFTLTLPNTIDPFGVSAPENVDFRILGPLGTLALGTYDPSTHTITYKFTDYITRYAVSSFSTISPFFIDRYTVKTNQKIDLFLKIGQVSSDLYHFTVDYNPYYGIMDTDNPVNIGSIITRLNQDTGDFVNYVYINPAGQSLLDSTFTLTGNGSTILDNSTKVQVFEVNYPNIQMPPSWGIDDSSLTETNRYYINKQDGKISINFYNDLYLEKSYIVKISGKSDLTNNEPVHTSATLTQRRYISSAYWTHTGRYIPSGPYTETFTYNAGVLKRSGESNADGSVVVRLSNRKNYIDFMKSNSQGTPLEATFELRKKATNDMVTVGTPVISDKTTGKFYFEGLPPGDYEVWETKAPDGYTKPVEAVATFKVTDEGEIVDKSLEDGRIINYKRPELPATGGPGIFVYLFIGSSLCLVAFFWNRSSRFTR
>NZ_LS483344.1|WP_111677011.1|1451265_1451925_+|hypothetical-protein
MKRCNKYLFTSLLAASMLFSSYKSVHAHDNIDEEGKVHLYWQGNYYVDNYVDYTKKLVDNSIEWTVTFNSAKEQWVYPDFSVFLPKGVKAPKEITYEHYYWDGTVDSKTRSNTQWHYDWEKQKTNFNQEFDKFPGYTGWSPSLDKFYKLKNEGKFSHVLVDTYGRQSHTYFSHKMVWKFKTELEDNYKDKWDKLPFIAGIKQNNPLAASFPSYKGEFGE
>NZ_LS483344.1|WP_172448826.1|1449506_1450913_-|short-chain-fatty-acid-transporter
MNNIKTKKRFMDRYIDGFMKWMPESLFICFILTFLVVTMSVLMTDSPFIGTEKTGGIIYGWVNGFWGLLSFAMQMTILLATGNAVASSPPAHKMFKSLAKLPQTRTQIFIFSIVVGSIFGFLHWGLGMMVAIVFGKELLVQARQKGIKVHTPLFVATLFFTFLPATSGLSGAAVLYSATPDYLRNSVADAYKQVVPESVPLTESVLNLPFISLLVVCMLVPLCFALLAHPKDETKIMELDDEIYHHSLDTASHVVIARNTPAEKMNASRLVMYLVGGAIVSYSLYHFSVVGLSGLDLNSFNFLFLGLGLLLCGQQGPEYYGSLFKDGVMSSWGLVLQFPFYAGIFGIIQSTGLGLEISQFFVAISNGTTWPVFAYLYSALLNIAVPSGGSKFVIEAPYIVPATIEVGNDLGKILQAYQLGDATTNLIVPFWALSYLSNFKLKFNQIVAYTIPCVLVVTGIAIIYLFVF
>NZ_LS483344.1|WP_111677012.1|1448526_1449438_+|LysR-family-transcriptional-regulator
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKKLFLKEVDFAILLTPTTLDATIADIDILLRDQLCLYMSHKTFQETFDSNSNISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRYSSYLTILPRPITHFAHMDGLVEVPLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFTNQRF
>NZ_LS483344.1|WP_111677013.1|1447221_1448406_-|acetyl-CoA-C-acetyltransferase
MTKEVVITSAYRTPIGNFGGVFKSLSAVDLGVTVVTKILADTGLKSDAIDEVIFGNVLHAGLGQNVARQVALNAGLSYDTPAFTIDMVCGSGLKAVELGAQKIQTGNADIVLVGGTENMSQAPYVLQGQRWGSRMGDSKVVDTMLKDGLSDAFAGYHMGITAENIGQQYGLTREEQDAFAADSQRKAQLAIEKGHFKEEIAPVTIPQRKGEPLLIDQDEYPKFGTTVDKLAKLRPAFIKDEGTVTAGNASGINDGAAAILLMSKEKAEELGLPILAKITSYASAGVDPSIMGCGPIPATKKALAKAQLTIDDIDLIEANEAFAAQALAVSRDLGFDNEKVNVNGGAIALGHPIGASGARILVTLLAEMAKRDVRHGLATLCIGGGQGQSIIVTR
>NZ_LS483344.1|WP_002986455.1|1446550_1447210_-|CoA-transferase-subunit-A
MKENKRIAIAEAISHIKDGDTIMVGGFMANGTPEALIDALVDKGTKDLTLICNDAGFVDRGVGKMVANHQFKTIYATHIGLNKEAGRQMTAGETTIELIPQGTFAEKIRIGAYGIGGFYTPTGVGTLVAEGKETKTIKGKTYLLEYPFEADVALIFANKADEMGNLQYSGSENNFNQLMAACAKTTIVQAREIVPVGTIQPECVHTPHIFVDYIVKEGV
>NZ_LS483344.1|WP_111677004.1|1464985_1466479_+|helix-turn-helix-domain-containing-protein
MIEKYLESSIESKCQLVVLFFKTSYLPITEVAEKTGLTFLQLNHYCEELNAFFPGSLSMTIQKRMISCQFTHPFKETYLYQLYASSNVLQLLAFLIKNGSHSRPLTDFARSHFLSNSSAYRMREALVPLLRNFELKLSKNKIVGEEYRIRYLIALLYSKFGIKVYDLTQQDKNTIHSFLSHSSTHLKTSPWLSESFSFYDILLALSWKRHQFSVTIPQTRIFQQLKKLFVYDSLKKSSRDIIETYCQLNFSAGDLDYLYLIYITANNSFASLQWTPEHIRQCCQLFEENDTFRLLLNPIITLLPNLKEQKASLVKALMFFSKSFLFNLQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILRNIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITHSQLIPFVQHELTKGIAVAEISFDESILSIQELMYQVKEEKFQADLTKQLT
>NZ_LS483344.1|WP_111677003.1|1466625_1467498_+|Hsp33-family-molecular-chaperone-HslO
MDKIIKSIAQSGAFRAYVLDSTETVALAQEKHNTLSSSTVALGRTLIANQILAANQKGDSKITVKAIGDSSFGHIISVADTKGHVKGYIQNTGVDIKKTATGEVLVGPFMGNGHFVTIIDYGTGNPYTSTTPLITGEIGEDFAYYLTESEQTPSAIGLNVLLDENDKVKVAGGFMVQVLPGASEEEIARYEKRLQEMPAISHLLASKNHVDALLEAIYGDEPYKRLSEEPLSFQCDCSRERFEAALMTLPKADLQAMIDEDKGAEIVCQFCGTKYQFNESDLEAIINDKA
>NZ_LS483344.1|WP_002994067.1|1467484_1468462_+|tRNA-dihydrouridine-synthase-DusB
MIKLNSSFRIGDVEIPRRTVLAPMAGVTNSAFRTIAKEFGAGLVVMEMISEKGLLYNNEKTLHMLHIDENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDKIYHIVKEVTSVLDIPLTVKMRTGWADSSLAVENALAAESAGVSALAMHGRTREQMYTGTCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYLFTQINHFFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLRGTAGAAKVRGAVSRAETLAEVEAIFETVR
>NZ_LS483344.1|WP_002986504.1|1468481_1469123_+|deoxynucleoside-kinase
MLIVLAGTIGAGKSSLAAALGEHLGTDVFYEAVDNNPVLDLYYQDPKKYAFLLQIYFLNKRFKSIKEAYQADNNILDRSIFEDELFLKLNYKNGNVTKTELDIYQELLANMLEELEGMPKKRPDLLIYIDVSFDKMLERIEKRGRSFEQVDGNPSLEQYYHQVHGEYPTWYEDYKVSPKMKIDGNSLDFVQNPQDLATVLKMIDTKLKELHLL
>NZ_LS483344.1|WP_003053955.1|1469381_1469777_-|single-stranded-DNA-binding-protein
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTRKYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF
>NZ_LS483344.1|WP_030126456.1|1469927_1470554_-|DUF4479-and-tRNA-binding-domain-containing-protein
MIFAYNKEQVGDVLMVILQDTKDIKRQVERKGKVARVFAEESGKTLAWNIFEASSLITIEGNGQIFLTDEDLARLNAELAKEGFSERLEPTVEPVFVVGQIVEMVAHPDSDHLNICQVAIGEDQTVQIVAGAPNAALGLKTIVALPGAIMPNGSLIFPGKLRGEESYGMMCSPRELALPNAPQKRGIIELDESAVVGEAFDPAKHWKG
>NZ_LS483344.1|WP_002992751.1|1470571_1470889_-|thioredoxin-family-protein
MIRPTSYESLAALIEKEDKLVLFFTADWCPDCQFIYPIMPEIEAELTDMTFVCVNRDQFIEVAQKWNIFGIPSFVVIEKGQEVGRLVNKMRKTKTEIMHFLAAYQ
>NZ_LS483344.1|WP_172448825.1|1470885_1471179_-|DUF4651-domain-containing-protein
MRDMSKKKIGMISGIFGFSLAIGLGIVIKDYCQDRQRRQMTRDLRTFFSPLGQIEVLYINPCQVKQDYISGGVVMSNGKQYEFTYHSRQISFEEDKG
>NZ_LS483344.1|WP_012560390.1|1471634_1472702_+|glutamyl-aminopeptidase
MTDLFSKIKEVTELDGIAGYEHSVRDYLRTKITPLVDRVETDGLGGIFGIRDSKAEKAPRILVAAHMDEVGFMVSDIKVDGTLRVVGIGGWNPLVVSSQRFTLYTRTGQVIPLISGSVPPHFLRGANGSASLPHIEDIVFDGGFTDKAEAERFGITPGDIIVPQSETILTANQKNIISKAWDNRYGVLMITEMLEALKGQDLNNTLIAGANVQEEVGLRGAHVSTTKFDPELFFAVDCSPAGDIYGNPGTIGDGTLLRFYDPGHVMLKDMRDFLLTTAEDAGVNFQYYCGKGGTDAGAAHLQNGGVPSTTIGVCARYIHSHQTLYAMDDFVEAQAFLQAIIKKLDRSTVDLIKRY
>NZ_LS483344.1|WP_111677001.1|1472749_1473520_+|pyrroline-5-carboxylate-reductase
MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLTLPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGMPKVKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELERLGLTTTVSSAIDKTIDKAKSL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	NZ_LS483344.1	497038-497071	2	0.941
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	NZ_LS483344.1	497039-497071	2	0.939

1. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to position: 497038-497071, mismatch: 2, identity: 0.941

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

2. spacer 1.8|279296|33|NZ_LS483344|CRT matches to position: 497039-497071, mismatch: 2, identity: 0.939

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448946	Streptococcus phage Javan456, complete genome	40569-40601	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448858	Streptococcus phage Javan166, complete genome	42297-42329	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448784	Streptococcus phage Javan505, complete genome	37349-37381	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448769	Streptococcus phage Javan471, complete genome	31700-31732	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448947	Streptococcus phage Javan458, complete genome	37349-37381	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448965	Streptococcus phage Javan506, complete genome	37718-37750	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448684	Streptococcus phage Javan151, complete genome	31700-31732	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448690	Streptococcus phage Javan169, complete genome	38983-39015	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448689	Streptococcus phage Javan163, complete genome	37349-37381	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448974	Streptococcus phage Javan524, complete genome	37349-37381	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448789	Streptococcus phage Javan513, complete genome	37348-37380	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448678	Streptococcus phage Javan135, complete genome	35930-35962	0	1.0
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448953	Streptococcus phage Javan474, complete genome	15561-15595	0	1.0
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448790	Streptococcus phage Javan515, complete genome	12608-12642	0	1.0
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448954	Streptococcus phage Javan476, complete genome	12276-12310	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448946	Streptococcus phage Javan456, complete genome	40569-40600	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448858	Streptococcus phage Javan166, complete genome	42297-42328	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448784	Streptococcus phage Javan505, complete genome	37349-37380	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448769	Streptococcus phage Javan471, complete genome	31700-31731	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448947	Streptococcus phage Javan458, complete genome	37349-37380	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448965	Streptococcus phage Javan506, complete genome	37718-37749	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448684	Streptococcus phage Javan151, complete genome	31700-31731	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448690	Streptococcus phage Javan169, complete genome	38983-39014	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448777	Streptococcus phage Javan491, complete genome	31210-31241	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448689	Streptococcus phage Javan163, complete genome	37349-37380	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448974	Streptococcus phage Javan524, complete genome	37349-37380	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448789	Streptococcus phage Javan513, complete genome	37348-37379	0	1.0
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448678	Streptococcus phage Javan135, complete genome	35930-35961	0	1.0
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448953	Streptococcus phage Javan474, complete genome	15561-15594	0	1.0
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448790	Streptococcus phage Javan515, complete genome	12608-12641	0	1.0
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448954	Streptococcus phage Javan476, complete genome	12276-12309	0	1.0
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448777	Streptococcus phage Javan491, complete genome	31210-31242	1	0.97
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448763	Streptococcus phage Javan451, complete genome	31337-31369	1	0.97
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448676	Streptococcus phage Javan131, complete genome	41326-41358	1	0.97
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448792	Streptococcus phage Javan521, complete genome	33746-33779	1	0.971
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	NC_004584	Streptococcus prophage 315.1, complete genome	33339-33372	1	0.971
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448958	Streptococcus phage Javan486, complete genome	34017-34050	1	0.971
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448770	Streptococcus phage Javan477, complete genome	33746-33779	1	0.971
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448793	Streptococcus phage Javan523, complete genome	35295-35328	1	0.971
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448978	Streptococcus phage Javan532, complete genome	33233-33266	1	0.971
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448785	Streptococcus phage Javan507, complete genome	33234-33267	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448946	Streptococcus phage Javan456, complete genome	40569-40602	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448858	Streptococcus phage Javan166, complete genome	42297-42330	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448784	Streptococcus phage Javan505, complete genome	37349-37382	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448769	Streptococcus phage Javan471, complete genome	31700-31733	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448947	Streptococcus phage Javan458, complete genome	37349-37382	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448965	Streptococcus phage Javan506, complete genome	37718-37751	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448684	Streptococcus phage Javan151, complete genome	31700-31733	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448690	Streptococcus phage Javan169, complete genome	38983-39016	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448689	Streptococcus phage Javan163, complete genome	37349-37382	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448974	Streptococcus phage Javan524, complete genome	37349-37382	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448789	Streptococcus phage Javan513, complete genome	37348-37381	1	0.971
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448678	Streptococcus phage Javan135, complete genome	35930-35963	1	0.971
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448953	Streptococcus phage Javan474, complete genome	15561-15596	1	0.972
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448790	Streptococcus phage Javan515, complete genome	12608-12643	1	0.972
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448954	Streptococcus phage Javan476, complete genome	12276-12311	1	0.972
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448775	Streptococcus phage Javan489, complete genome	38569-38600	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448961	Streptococcus phage Javan494, complete genome	35964-35995	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448794	Streptococcus phage Javan525, complete genome	35698-35729	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448970	Streptococcus phage Javan516, complete genome	42178-42209	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448763	Streptococcus phage Javan451, complete genome	31337-31368	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448953	Streptococcus phage Javan474, complete genome	40290-40321	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448945	Streptococcus phage Javan454, complete genome	36125-36156	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448766	Streptococcus phage Javan465, complete genome	36821-36852	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448765	Streptococcus phage Javan459, complete genome	35696-35727	1	0.969
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448676	Streptococcus phage Javan131, complete genome	41326-41357	1	0.969
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448792	Streptococcus phage Javan521, complete genome	33747-33779	1	0.97
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	NC_004584	Streptococcus prophage 315.1, complete genome	33340-33372	1	0.97
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448958	Streptococcus phage Javan486, complete genome	34018-34050	1	0.97
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448770	Streptococcus phage Javan477, complete genome	33747-33779	1	0.97
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448793	Streptococcus phage Javan523, complete genome	35296-35328	1	0.97
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448978	Streptococcus phage Javan532, complete genome	33234-33266	1	0.97
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448785	Streptococcus phage Javan507, complete genome	33235-33267	1	0.97
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448775	Streptococcus phage Javan489, complete genome	38569-38601	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448961	Streptococcus phage Javan494, complete genome	35964-35996	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448794	Streptococcus phage Javan525, complete genome	35698-35730	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448970	Streptococcus phage Javan516, complete genome	42178-42210	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448953	Streptococcus phage Javan474, complete genome	40290-40322	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448945	Streptococcus phage Javan454, complete genome	36125-36157	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448766	Streptococcus phage Javan465, complete genome	36821-36853	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448765	Streptococcus phage Javan459, complete genome	35696-35728	2	0.939
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MK448793	Streptococcus phage Javan523, complete genome	37480-37512	2	0.939
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448775	Streptococcus phage Javan489, complete genome	36652-36685	2	0.941
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448795	Streptococcus phage Javan527, complete genome	40276-40309	2	0.941
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448953	Streptococcus phage Javan474, complete genome	38373-38406	2	0.941
NZ_LS483344_1	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	MK448944	Streptococcus phage Javan452, complete genome	37310-37343	2	0.941
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448960	Streptococcus phage Javan492, complete genome	12194-12228	2	0.943
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448762	Streptococcus phage Javan447, complete genome	12321-12355	2	0.943
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448970	Streptococcus phage Javan516, complete genome	16113-16147	2	0.943
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	NC_004584	Streptococcus prophage 315.1, complete genome	11126-11160	2	0.943
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448978	Streptococcus phage Javan532, complete genome	11021-11055	2	0.943
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448785	Streptococcus phage Javan507, complete genome	11021-11055	2	0.943
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448777	Streptococcus phage Javan491, complete genome	31210-31243	2	0.941
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448763	Streptococcus phage Javan451, complete genome	31337-31370	2	0.941
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448676	Streptococcus phage Javan131, complete genome	41326-41359	2	0.941
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448792	Streptococcus phage Javan521, complete genome	33745-33779	2	0.943
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	NC_004584	Streptococcus prophage 315.1, complete genome	33338-33372	2	0.943
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448958	Streptococcus phage Javan486, complete genome	34016-34050	2	0.943
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448770	Streptococcus phage Javan477, complete genome	33745-33779	2	0.943
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448793	Streptococcus phage Javan523, complete genome	35294-35328	2	0.943
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448978	Streptococcus phage Javan532, complete genome	33232-33266	2	0.943
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448785	Streptococcus phage Javan507, complete genome	33233-33267	2	0.943
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448960	Streptococcus phage Javan492, complete genome	12194-12229	2	0.944
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448762	Streptococcus phage Javan447, complete genome	12321-12356	2	0.944
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448970	Streptococcus phage Javan516, complete genome	16113-16148	2	0.944
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	NC_004584	Streptococcus prophage 315.1, complete genome	11126-11161	2	0.944
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448978	Streptococcus phage Javan532, complete genome	11021-11056	2	0.944
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448785	Streptococcus phage Javan507, complete genome	11021-11056	2	0.944
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MK448793	Streptococcus phage Javan523, complete genome	37480-37511	2	0.938
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448775	Streptococcus phage Javan489, complete genome	36653-36685	2	0.939
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448795	Streptococcus phage Javan527, complete genome	40277-40309	2	0.939
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448953	Streptococcus phage Javan474, complete genome	38374-38406	2	0.939
NZ_LS483344_1	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	MK448944	Streptococcus phage Javan452, complete genome	37311-37343	2	0.939
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448960	Streptococcus phage Javan492, complete genome	12194-12227	2	0.941
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448762	Streptococcus phage Javan447, complete genome	12321-12354	2	0.941
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448970	Streptococcus phage Javan516, complete genome	16113-16146	2	0.941
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	NC_004584	Streptococcus prophage 315.1, complete genome	11126-11159	2	0.941
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448978	Streptococcus phage Javan532, complete genome	11021-11054	2	0.941
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448785	Streptococcus phage Javan507, complete genome	11021-11054	2	0.941
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448792	Streptococcus phage Javan521, complete genome	11102-11136	3	0.914
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448770	Streptococcus phage Javan477, complete genome	11102-11136	3	0.914
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448775	Streptococcus phage Javan489, complete genome	38569-38602	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448961	Streptococcus phage Javan494, complete genome	35964-35997	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448794	Streptococcus phage Javan525, complete genome	35698-35731	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448970	Streptococcus phage Javan516, complete genome	42178-42211	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448953	Streptococcus phage Javan474, complete genome	40290-40323	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448945	Streptococcus phage Javan454, complete genome	36125-36158	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448766	Streptococcus phage Javan465, complete genome	36821-36854	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448765	Streptococcus phage Javan459, complete genome	35696-35729	3	0.912
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MK448793	Streptococcus phage Javan523, complete genome	37480-37513	3	0.912
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448775	Streptococcus phage Javan489, complete genome	36651-36685	3	0.914
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448795	Streptococcus phage Javan527, complete genome	40275-40309	3	0.914
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448953	Streptococcus phage Javan474, complete genome	38372-38406	3	0.914
NZ_LS483344_1	1.5\|279294\|35\|NZ_LS483344\|CRISPRCasFinder	279294-279328	35	MK448944	Streptococcus phage Javan452, complete genome	37309-37343	3	0.914
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448792	Streptococcus phage Javan521, complete genome	11102-11137	3	0.917
NZ_LS483344_1	1.6\|279360\|36\|NZ_LS483344\|CRISPRCasFinder	279360-279395	36	MK448770	Streptococcus phage Javan477, complete genome	11102-11137	3	0.917
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448792	Streptococcus phage Javan521, complete genome	11102-11135	3	0.912
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448770	Streptococcus phage Javan477, complete genome	11102-11135	3	0.912
NZ_LS483344_1	1.3\|279361\|35\|NZ_LS483344\|PILER-CR	279361-279395	35	MK448793	Streptococcus phage Javan523, complete genome	12939-12973	7	0.8
NZ_LS483344_1	1.9\|279362\|34\|NZ_LS483344\|CRT	279362-279395	34	MK448793	Streptococcus phage Javan523, complete genome	12939-12972	7	0.794
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	HQ634175	Cyanophage P-RSM1 genomic sequence	158395-158426	8	0.75
NZ_LS483344_1	1.1\|279230\|33\|NZ_LS483344\|PILER-CR	279230-279262	33	MT074483	Salmonella phage skrot, complete genome	33069-33101	9	0.727
NZ_LS483344_1	1.7\|279231\|32\|NZ_LS483344\|CRT	279231-279262	32	MT074483	Salmonella phage skrot, complete genome	33069-33100	9	0.719
NZ_LS483344_1	1.4\|279229\|34\|NZ_LS483344\|CRISPRCasFinder	279229-279262	34	MT074483	Salmonella phage skrot, complete genome	33069-33102	10	0.706

1. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448946 (Streptococcus phage Javan456, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

2. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

3. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

4. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448769 (Streptococcus phage Javan471, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

5. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

6. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

7. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448684 (Streptococcus phage Javan151, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

8. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

9. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

10. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

11. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

12. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacgcgacc	Protospacer
*********************************

13. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 0, identity: 1.0

aatgttcatttttacctcgcatttaacttactctc	CRISPR spacer
aatgttcatttttacctcgcatttaacttactctc	Protospacer
***********************************

14. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

aatgttcatttttacctcgcatttaacttactctc	CRISPR spacer
aatgttcatttttacctcgcatttaacttactctc	Protospacer
***********************************

15. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

aatgttcatttttacctcgcatttaacttactctc	CRISPR spacer
aatgttcatttttacctcgcatttaacttactctc	Protospacer
***********************************

16. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448946 (Streptococcus phage Javan456, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

17. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

18. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

19. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448769 (Streptococcus phage Javan471, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

20. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

21. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

22. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448684 (Streptococcus phage Javan151, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

23. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

24. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

25. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

26. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

27. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

28. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacgcgacc	Protospacer
********************************

29. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 0, identity: 1.0

atgttcatttttacctcgcatttaacttactctc	CRISPR spacer
atgttcatttttacctcgcatttaacttactctc	Protospacer
**********************************

30. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

atgttcatttttacctcgcatttaacttactctc	CRISPR spacer
atgttcatttttacctcgcatttaacttactctc	Protospacer
**********************************

31. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

atgttcatttttacctcgcatttaacttactctc	CRISPR spacer
atgttcatttttacctcgcatttaacttactctc	Protospacer
**********************************

32. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 1, identity: 0.97

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttcgacgcgacc	Protospacer
.********************************

33. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 1, identity: 0.97

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttctacgcgacc	Protospacer
************************ ********

34. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 1, identity: 0.97

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttctacgcgacc	Protospacer
************************ ********

35. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 1, identity: 0.971

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgaggctatctggtgacagtatcat	Protospacer
*************** ******************

36. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 1, identity: 0.971

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgaggctatctggtgacagtatcat	Protospacer
*************** ******************

37. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 1, identity: 0.971

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgaggctatctggtgacagtatcat	Protospacer
*************** ******************

38. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 1, identity: 0.971

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgaggctatctggtgacagtatcat	Protospacer
*************** ******************

39. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 1, identity: 0.971

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgaggctatctggtgacagtatcat	Protospacer
*************** ******************

40. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 1, identity: 0.971

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgaggctatctggtgacagtatcat	Protospacer
*************** ******************

41. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 1, identity: 0.971

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgaggctatctggtgacagtatcat	Protospacer
*************** ******************

42. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448946 (Streptococcus phage Javan456, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

43. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

44. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

45. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448769 (Streptococcus phage Javan471, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

46. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

47. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

48. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448684 (Streptococcus phage Javan151, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

49. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

50. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

51. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

52. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

53. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 1, identity: 0.971

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacgcgacc	Protospacer
.*********************************

54. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 1, identity: 0.972

taatgttcatttttacctcgcatttaacttactctc	CRISPR spacer
caatgttcatttttacctcgcatttaacttactctc	Protospacer
.***********************************

55. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.972

taatgttcatttttacctcgcatttaacttactctc	CRISPR spacer
caatgttcatttttacctcgcatttaacttactctc	Protospacer
.***********************************

56. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 1, identity: 0.972

taatgttcatttttacctcgcatttaacttactctc	CRISPR spacer
caatgttcatttttacctcgcatttaacttactctc	Protospacer
.***********************************

57. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

58. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

59. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

60. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

61. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

62. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

63. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

64. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

65. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

66. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 1, identity: 0.969

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttctacgcgacc	Protospacer
*********************** ********

67. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 1, identity: 0.97

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgaggctatctggtgacagtatcat	Protospacer
************** ******************

68. spacer 1.8|279296|33|NZ_LS483344|CRT matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 1, identity: 0.97

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgaggctatctggtgacagtatcat	Protospacer
************** ******************

69. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 1, identity: 0.97

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgaggctatctggtgacagtatcat	Protospacer
************** ******************

70. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 1, identity: 0.97

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgaggctatctggtgacagtatcat	Protospacer
************** ******************

71. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 1, identity: 0.97

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgaggctatctggtgacagtatcat	Protospacer
************** ******************

72. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 1, identity: 0.97

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgaggctatctggtgacagtatcat	Protospacer
************** ******************

73. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 1, identity: 0.97

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgaggctatctggtgacagtatcat	Protospacer
************** ******************

74. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

75. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

76. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

77. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

78. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

79. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

80. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

81. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
cttgttgataataacttcgtcttctacgcgacc	Protospacer
.*********************** ********

82. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 2, identity: 0.939

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tttgttgataataacttcgtcttcgacacgccc	Protospacer
***************************.** **

83. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 2, identity: 0.941

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

84. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 2, identity: 0.941

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

85. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 2, identity: 0.941

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

86. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 2, identity: 0.941

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

87. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 2, identity: 0.943

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgcatttaacttactctc	Protospacer
  *********  ************************

88. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 2, identity: 0.943

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgcatttaacttactctc	Protospacer
  *********  ************************

89. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 2, identity: 0.943

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgcatttaacttactctc	Protospacer
  *********  ************************

90. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 2, identity: 0.943

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgcatttaacttactctc	Protospacer
  *********  ************************

91. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 2, identity: 0.943

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgcatttaacttactctc	Protospacer
  *********  ************************

92. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 2, identity: 0.943

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgcatttaacttactctc	Protospacer
  *********  ************************

93. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 2, identity: 0.941

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttcgacgcgacc	Protospacer
..********************************

94. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 2, identity: 0.941

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttctacgcgacc	Protospacer
.************************ ********

95. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 2, identity: 0.941

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttctacgcgacc	Protospacer
.************************ ********

96. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 2, identity: 0.943

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgaggctatctggtgacagtatcat	Protospacer
.*************** ******************

97. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 2, identity: 0.943

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgaggctatctggtgacagtatcat	Protospacer
.*************** ******************

98. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 2, identity: 0.943

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgaggctatctggtgacagtatcat	Protospacer
.*************** ******************

99. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 2, identity: 0.943

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgaggctatctggtgacagtatcat	Protospacer
.*************** ******************

100. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 2, identity: 0.943

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgaggctatctggtgacagtatcat	Protospacer
.*************** ******************

101. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 2, identity: 0.943

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgaggctatctggtgacagtatcat	Protospacer
.*************** ******************

102. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 2, identity: 0.943

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgaggctatctggtgacagtatcat	Protospacer
.*************** ******************

103. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 2, identity: 0.944

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgcatttaacttactctc	Protospacer
  **********  ************************

104. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 2, identity: 0.944

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgcatttaacttactctc	Protospacer
  **********  ************************

105. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 2, identity: 0.944

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgcatttaacttactctc	Protospacer
  **********  ************************

106. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 2, identity: 0.944

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgcatttaacttactctc	Protospacer
  **********  ************************

107. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 2, identity: 0.944

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgcatttaacttactctc	Protospacer
  **********  ************************

108. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 2, identity: 0.944

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgcatttaacttactctc	Protospacer
  **********  ************************

109. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 2, identity: 0.938

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttgataataacttcgtcttcgacacgccc	Protospacer
**************************.** **

110. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 2, identity: 0.939

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

111. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 2, identity: 0.939

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

112. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 2, identity: 0.939

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

113. spacer 1.8|279296|33|NZ_LS483344|CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 2, identity: 0.939

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

114. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 2, identity: 0.941

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgcatttaacttactctc	Protospacer
  ********  ************************

115. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 2, identity: 0.941

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgcatttaacttactctc	Protospacer
  ********  ************************

116. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 2, identity: 0.941

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgcatttaacttactctc	Protospacer
  ********  ************************

117. spacer 1.9|279362|34|NZ_LS483344|CRT matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 2, identity: 0.941

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgcatttaacttactctc	Protospacer
  ********  ************************

118. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 2, identity: 0.941

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgcatttaacttactctc	Protospacer
  ********  ************************

119. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 2, identity: 0.941

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgcatttaacttactctc	Protospacer
  ********  ************************

120. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 3, identity: 0.914

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgtatttaacttactctc	Protospacer
  *********  ********.***************

121. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 3, identity: 0.914

aatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--tgttcattttgttacctcgtatttaacttactctc	Protospacer
  *********  ********.***************

122. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

123. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

124. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

125. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

126. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

127. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

128. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

129. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ccttgttgataataacttcgtcttctacgcgacc	Protospacer
..*********************** ********

130. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 3, identity: 0.912

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ctttgttgataataacttcgtcttcgacacgccc	Protospacer
.***************************.** **

131. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 3, identity: 0.914

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgcggcaatctggcgacagtatcat	Protospacer
.*********** **********.***********

132. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 3, identity: 0.914

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgcggcaatctggcgacagtatcat	Protospacer
.*********** **********.***********

133. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 3, identity: 0.914

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgcggcaatctggcgacagtatcat	Protospacer
.*********** **********.***********

134. spacer 1.5|279294|35|NZ_LS483344|CRISPRCasFinder matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 3, identity: 0.914

tagtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
cagtccctcttgcggcaatctggcgacagtatcat	Protospacer
.*********** **********.***********

135. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 3, identity: 0.917

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgtatttaacttactctc	Protospacer
  **********  ********.***************

136. spacer 1.6|279360|36|NZ_LS483344|CRISPRCasFinder matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 3, identity: 0.917

taatgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--atgttcattttgttacctcgtatttaacttactctc	Protospacer
  **********  ********.***************

137. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 3, identity: 0.912

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgtatttaacttactctc	Protospacer
  ********  ********.***************

138. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 3, identity: 0.912

atgttcattt--ttacctcgcatttaacttactctc	CRISPR spacer
--gttcattttgttacctcgtatttaacttactctc	Protospacer
  ********  ********.***************

139. spacer 1.3|279361|35|NZ_LS483344|PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 7, identity: 0.8

-----aatgttcatttttacctcgcatttaacttactctc	CRISPR spacer
ccaaaagtg-----gtttacctcgcatttaacttactctc	Protospacer
     *.**      *************************

140. spacer 1.9|279362|34|NZ_LS483344|CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 7, identity: 0.794

-----atgttcatttttacctcgcatttaacttactctc	CRISPR spacer
caaaagtg-----gtttacctcgcatttaacttactctc	Protospacer
     .**      *************************

141. spacer 1.7|279231|32|NZ_LS483344|CRT matches to HQ634175 (Cyanophage P-RSM1 genomic sequence) position: , mismatch: 8, identity: 0.75

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ttgttcatattaacttcgtcttcttcctcagc	Protospacer
***** *** *************  * . * *

142. spacer 1.1|279230|33|NZ_LS483344|PILER-CR matches to MT074483 (Salmonella phage skrot, complete genome) position: , mismatch: 9, identity: 0.727

tttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
tggattgataataaattcgacttcgacgttgcg	Protospacer
*  .********** **** ********. .*

143. spacer 1.7|279231|32|NZ_LS483344|CRT matches to MT074483 (Salmonella phage skrot, complete genome) position: , mismatch: 9, identity: 0.719

ttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
ggattgataataaattcgacttcgacgttgcg	Protospacer
  .********** **** ********. .*

144. spacer 1.4|279229|34|NZ_LS483344|CRISPRCasFinder matches to MT074483 (Salmonella phage skrot, complete genome) position: , mismatch: 10, identity: 0.706

ttttgttgataataacttcgtcttcgacgcgacc	CRISPR spacer
gtggattgataataaattcgacttcgacgttgcg	Protospacer
 *  .********** **** ********. .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

174498 : 237635

Streptococcus_pyogenes_phage(55.0%)

transposase,tRNA,capsid,holin,terminase,tail,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002988958.1\|174498_175434_+\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	6.0e-05	38.5
WP_011184816.1\|175423_176746_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_002983660.1\|176783_177524_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_111677403.1\|177520_179419_+	Stk1 family PASTA domain-containing Ser/Thr kinase	B5LWE2	Feldmannia_species_virus	1.4e-21	30.7
WP_011054833.1\|179541_180234_+	cell wall-active antibiotics response protein	NA	NA	NA	NA
WP_111695125.1\|180230_181235_+	sensor histidine kinase	NA	NA	NA	NA
WP_002983671.1\|181227_181869_+	response regulator transcription factor	NA	NA	NA	NA
WP_111677401.1\|181905_183306_+	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	6.0e-25	42.3
WP_002983674.1\|183305_183683_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_111677400.1\|183700_184642_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	1.6e-130	77.9
WP_002988970.1\|184769_185402_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.2e-63	54.3
WP_047235421.1\|185456_186782_+	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	6.3e-117	51.3
WP_002993195.1\|186753_187419_+	ComF family protein	NA	NA	NA	NA
WP_111695126.1\|187498_188047_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_002983693.1\|195775_196309_-	DUF402 domain-containing protein	NA	NA	NA	NA
WP_111677399.1\|196388_197165_-	recombination regulator RecX	NA	NA	NA	NA
WP_043885029.1\|198570_199257_-	hypothetical protein	A0A1P8VVT3	Streptococcus_phage	4.8e-121	99.1
WP_011054825.1\|199427_199580_-	hypothetical protein	A0A1P8VVQ0	Streptococcus_phage	5.2e-20	100.0
WP_011054824.1\|199590_199968_-	ImmA/IrrE family metallo-endopeptidase	A0A1P8VVK5	Streptococcus_phage	4.0e-69	100.0
WP_011528540.1\|199951_200311_-	helix-turn-helix transcriptional regulator	A0A1P8VVN3	Streptococcus_phage	1.8e-58	98.3
WP_009881062.1\|200499_200718_+	helix-turn-helix transcriptional regulator	A0A1P8VVR5	Streptococcus_phage	4.1e-34	100.0
WP_011054822.1\|200812_201064_+	hypothetical protein	A0A1P8VVV6	Streptococcus_phage	1.4e-41	98.8
WP_011054821.1\|201094_201232_+	hypothetical protein	A0A1P8VVR9	Streptococcus_phage	9.2e-16	91.1
WP_063812425.1\|201247_201562_+	helix-turn-helix transcriptional regulator	A0A1P8VVN6	Streptococcus_phage	7.0e-51	96.2
WP_011054820.1\|201709_202192_+	siphovirus Gp157 family protein	A0A1P8VVS5	Streptococcus_phage	4.6e-78	99.4
WP_002995975.1\|202192_202873_+	AAA family ATPase	A0A1P8VVS4	Streptococcus_phage	1.6e-129	100.0
WP_011054819.1\|202974_204204_+	DEAD/DEAH box helicase	A0A1P8VVM2	Streptococcus_phage	2.8e-236	99.5
WP_011054580.1\|204218_204677_+	DUF669 domain-containing protein	A0A1P8VVN0	Streptococcus_phage	5.0e-82	99.3
WP_011106664.1\|204679_205492_+	bifunctional DNA primase/polymerase	A0A1P8VVM6	Streptococcus_phage	4.6e-155	98.9
WP_023611301.1\|205481_206963_+	nucleoside triphosphatase	A0A1P8VVM0	Streptococcus_phage	4.2e-295	99.4
WP_002987985.1\|207167_208031_+\|transposase	IS982-like element ISSpy2 family transposase	NA	NA	NA	NA
WP_011054817.1\|208176_208497_+	VRR-NUC domain-containing protein	A0A1P8VVL5	Streptococcus_phage	5.8e-53	99.1
WP_111677398.1\|208480_208837_+	hypothetical protein	A0A097PAU4	Streptococcus_pyogenes_phage	1.8e-58	95.8
WP_011018137.1\|209078_209363_+	DUF3310 domain-containing protein	A0A1P8VVP5	Streptococcus_phage	2.7e-49	97.9
WP_011054815.1\|209359_209773_+	hypothetical protein	Q938M1	Temperate_phage	1.2e-34	63.1
WP_011054814.1\|209769_209940_+	hypothetical protein	Q938M0	Temperate_phage	2.5e-10	96.8
WP_032461310.1\|209936_210221_+	hypothetical protein	A0A097PAV1	Streptococcus_pyogenes_phage	5.0e-40	91.5
WP_011054813.1\|210223_210559_+	hypothetical protein	A0A097PAS4	Streptococcus_pyogenes_phage	4.7e-45	100.0
WP_011054812.1\|210724_210910_+	hypothetical protein	A0A097PBF0	Streptococcus_pyogenes_phage	7.0e-27	100.0
WP_111677397.1\|211196_211700_+	DUF1642 domain-containing protein	A0A097PAV5	Streptococcus_pyogenes_phage	2.2e-91	98.2
WP_002987493.1\|211696_211867_+	hypothetical protein	A0A097PAS8	Streptococcus_pyogenes_phage	2.9e-27	100.0
WP_011054810.1\|212151_212586_+	ArpU family transcriptional regulator	J7KDQ1	Streptococcus_phage	2.2e-71	94.4
WP_011285571.1\|213195_213576_+	hypothetical protein	A0A097PAR5	Streptococcus_pyogenes_phage	1.0e-64	100.0
WP_009880266.1\|213565_214840_+\|terminase	PBSX family phage terminase large subunit	A0A097PAV9	Streptococcus_pyogenes_phage	1.1e-251	100.0
WP_009880265.1\|214839_216165_+\|portal	phage portal protein	A0A097PAT2	Streptococcus_pyogenes_phage	7.4e-243	100.0
WP_009880264.1\|216133_217042_+\|capsid	minor capsid protein	A0A097PBF2	Streptococcus_pyogenes_phage	4.2e-88	100.0
WP_011054805.1\|217048_217315_+	hypothetical protein	A0A097PAR8	Streptococcus_pyogenes_phage	2.6e-38	100.0
WP_011054804.1\|217464_218037_+	DUF4355 domain-containing protein	A0A097PAW3	Streptococcus_pyogenes_phage	1.2e-72	100.0
WP_009880261.1\|218054_218945_+	hypothetical protein	A0A097PAW2	Streptococcus_pyogenes_phage	8.6e-86	99.4
WP_009880260.1\|218957_219251_+	Rho termination factor N-terminal domain-containing protein	A0A097PBF3	Streptococcus_pyogenes_phage	2.0e-47	100.0
WP_009880259.1\|219264_219609_+	hypothetical protein	A0A097PAS2	Streptococcus_pyogenes_phage	1.1e-54	100.0
WP_009880258.1\|219605_219917_+	hypothetical protein	A0A097PAW7	Streptococcus_pyogenes_phage	2.6e-50	99.0
WP_009880257.1\|219913_220309_+	hypothetical protein	A0A097PAT9	Streptococcus_pyogenes_phage	1.8e-59	100.0
WP_009880256.1\|220310_220721_+	DUF5072 family protein	A0A097PAW5	Streptococcus_pyogenes_phage	1.4e-70	100.0
WP_111677396.1\|220732_221239_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	2.6e-79	100.0
WP_009880254.1\|221251_221569_+	hypothetical protein	A0A097PAS6	Streptococcus_pyogenes_phage	4.9e-52	100.0
WP_111677395.1\|221541_222000_+	hypothetical protein	A0A097PAX1	Streptococcus_pyogenes_phage	8.6e-82	99.3
WP_009880250.1\|223799_225284_+\|tail	phage tail family protein	A0A097PAW9	Streptococcus_pyogenes_phage	4.3e-292	99.8
WP_011054801.1\|225284_228725_+\|tail	phage tail protein	A0A097PBF5	Streptococcus_pyogenes_phage	0.0e+00	99.9
WP_111677394.1\|228729_230592_+	hypothetical protein	A0A097PAT0	Streptococcus_pyogenes_phage	0.0e+00	99.7
WP_009880247.1\|230602_230950_+	DUF1366 domain-containing protein	A0A097PAX5	Streptococcus_pyogenes_phage	3.5e-59	100.0
WP_015055952.1\|231099_231423_+	hypothetical protein	A0A097PAX2	Streptococcus_pyogenes_phage	7.7e-53	100.0
WP_011054798.1\|231422_231755_+\|holin	phage holin	A0A097PBF6	Streptococcus_pyogenes_phage	5.7e-51	100.0
WP_011054797.1\|231756_232521_+	CHAP domain-containing protein	A0A097PAT3	Streptococcus_pyogenes_phage	1.5e-150	100.0
WP_011054796.1\|232532_233135_+	hypothetical protein	A0A097PAX9	Streptococcus_pyogenes_phage	7.8e-91	98.8
WP_011054795.1\|233145_233919_+	hypothetical protein	A0A097PAV0	Streptococcus_pyogenes_phage	3.9e-135	100.0
WP_009880241.1\|233928_234150_+	hypothetical protein	A0A097PAX7	Streptococcus_pyogenes_phage	2.5e-18	84.5
WP_009880240.1\|234149_234809_+	hypothetical protein	A0A097PBF7	Streptococcus_pyogenes_phage	8.5e-123	100.0
WP_009880239.1\|234930_235686_-	streptococcal pyrogenic exotoxin SpeA	A0A097PAT7	Streptococcus_pyogenes_phage	2.2e-143	100.0
WP_011054793.1\|235906_236089_+	hypothetical protein	J7KBZ4	Streptococcus_phage	1.1e-19	81.4
WP_111677393.1\|236279_237635_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.3e-73	32.7

DBSCAN-SWA_2

357824 : 427704

Enterococcus_phage(21.43%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111677345.1\|357824_358601_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_111677044.1\|358744_359878_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_172448859.1\|360044_360785_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_002983967.1\|360984_361647_+	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_111677344.1\|361627_363850_+	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	9.1e-52	59.4
WP_111677343.1\|363941_364982_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_002983977.1\|365078_365684_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.8e-58	53.2
WP_111677342.1\|366052_366301_+	hypothetical protein	NA	NA	NA	NA
WP_011528765.1\|366297_366888_+	serine hydrolase	NA	NA	NA	NA
WP_011528764.1\|367001_368222_-	DUF3114 domain-containing protein	NA	NA	NA	NA
WP_111677341.1\|368228_369257_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_111677340.1\|369458_370163_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_111677339.1\|370281_370998_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_111677338.1\|371292_372255_+	competence protein CoiA	NA	NA	NA	NA
WP_085613985.1\|372267_374073_+	oligoendopeptidase F	NA	NA	NA	NA
WP_111677337.1\|374448_375645_+	OFA family MFS transporter	NA	NA	NA	NA
WP_002984000.1\|375710_376418_+	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	2.0e-08	27.2
WP_111695131.1\|376480_377536_+	peptidylprolyl isomerase PrsA	NA	NA	NA	NA
WP_111677335.1\|377922_380541_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.1e-62	34.1
WP_111677334.1\|380900_381116_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011184659.1\|381112_381874_+	DUF3169 family protein	NA	NA	NA	NA
WP_111677333.1\|381892_382588_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_111677332.1\|383930_385244_-	chloride channel protein	NA	NA	NA	NA
WP_011017933.1\|385218_386178_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.8e-126	70.2
WP_111677331.1\|386381_388541_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	4.7e-263	63.6
WP_002989242.1\|388560_388779_-	redoxin NrdH	A0A249XUR7	Enterococcus_phage	1.1e-13	49.3
WP_002984031.1\|389171_389435_+	phosphocarrier protein HPr	NA	NA	NA	NA
WP_111695132.1\|389439_391173_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_002984035.1\|391357_392785_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002989254.1\|394263_395349_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.6e-33	32.3
WP_002984060.1\|395446_396073_+	uridine kinase	A0A1V0SAA3	Catovirus	2.2e-35	39.7
WP_002989257.1\|396152_396416_+	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_002989260.1\|396468_397278_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_011017927.1\|397422_397920_+	GAF domain-containing protein	NA	NA	NA	NA
WP_011184646.1\|397919_399590_+	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	6.6e-47	40.6
WP_002992607.1\|399674_399878_+	DUF3272 domain-containing protein	NA	NA	NA	NA
WP_002984078.1\|399852_400794_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA
WP_111677329.1\|400997_403376_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_011054632.1\|403912_405109_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.9e-138	65.4
WP_011054631.1\|405282_406542_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_111677328.1\|406899_407805_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_002984095.1\|408042_408585_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011054629.1\|409892_410753_+	methionyl aminopeptidase	NA	NA	NA	NA
WP_002984102.1\|410754_411720_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_009880589.1\|411830_413114_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_009880588.1\|413106_413598_+	shikimate kinase	NA	NA	NA	NA
WP_011284919.1\|413805_415257_+	LCP family protein	NA	NA	NA	NA
WP_111677326.1\|415305_416694_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	D0R096	Streptococcus_phage	1.7e-258	98.0
WP_002984115.1\|417598_418000_+	PaaI family thioesterase	NA	NA	NA	NA
WP_111695133.1\|418104_419589_-	DUF1846 domain-containing protein	NA	NA	NA	NA
WP_011054623.1\|419962_421183_+	MFS transporter	NA	NA	NA	NA
WP_011017916.1\|421302_421668_-	thioesterase family protein	NA	NA	NA	NA
WP_011017915.1\|421782_422514_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_011054622.1\|422530_422854_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	6.1e-18	46.9
WP_032464791.1\|422956_423142_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_111677324.1\|423655_424966_-	SLC13 family permease	NA	NA	NA	NA
WP_002992869.1\|425189_426062_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_172448842.1\|426361_427704_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.4e-63	49.8

DBSCAN-SWA_3

443408 : 536082

105

Streptococcus_phage(37.7%)

transposase,tRNA,capsid,holin,head,terminase,portal,tail,integrase

attL 462328:462387|attR 502652:502729

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002987985.1\|443408_444272_+\|transposase	IS982-like element ISSpy2 family transposase	NA	NA	NA	NA
WP_002984200.1\|444508_444652_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
WP_012767157.1\|444663_446202_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9KZV5	Tupanvirus	3.5e-42	28.1
WP_111677319.1\|446198_447455_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	NA	NA	NA
WP_002984216.1\|447472_447712_+	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_111695134.1\|447704_448955_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_111677318.1\|448985_449969_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002984240.1\|451442_452279_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_111695135.1\|452278_453640_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_111695136.1\|453913_455161_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_002987985.1\|455270_456134_+\|transposase	IS982-like element ISSpy2 family transposase	NA	NA	NA	NA
WP_111695137.1\|456373_457390_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.7e-16	27.5
WP_111695138.1\|457504_458998_+	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_111677315.1\|459032_461297_+	glycogen/starch/alpha-glucan family phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	1.2e-11	43.7
WP_002989605.1\|461553_462174_-	DUF3862 domain-containing protein	NA	NA	NA	NA
462328:462387	attL	NA	NA	NA	NA
WP_002984265.1\|462447_463536_-\|integrase	site-specific integrase	A0A097PAS9	Streptococcus_pyogenes_phage	4.2e-204	99.4
WP_002984270.1\|463785_464595_-	type II toxin-antitoxin system PemK/MazF family toxin	J7KDP1	Streptococcus_phage	3.8e-24	35.8
WP_111677314.1\|464607_465444_-	helix-turn-helix transcriptional regulator	A0A097PBE5	Streptococcus_pyogenes_phage	1.8e-125	88.0
WP_001104151.1\|465799_465958_+	hypothetical protein	J7KH24	Streptococcus_phage	3.4e-22	92.3
WP_011017887.1\|466085_466769_-	DUF4145 domain-containing protein	A0A1X9I5M7	Streptococcus_phage	1.2e-71	59.4
WP_002992770.1\|466866_467067_+	helix-turn-helix transcriptional regulator	A0A141E205	Streptococcus_phage	2.7e-08	59.6
WP_011017885.1\|467176_467386_-	hypothetical protein	NA	NA	NA	NA
WP_111677313.1\|467572_467779_+	hypothetical protein	NA	NA	NA	NA
WP_002984301.1\|467915_468152_-	hypothetical protein	NA	NA	NA	NA
WP_111677312.1\|468277_468463_+	helix-turn-helix transcriptional regulator	J7KH19	Streptococcus_phage	4.6e-18	68.9
WP_111677311.1\|468540_468837_+	MerR family transcriptional regulator	A0A097PAT8	Streptococcus_pyogenes_phage	2.3e-43	84.7
WP_111677310.1\|468983_469298_+	helix-turn-helix transcriptional regulator	A0A1P8VVN6	Streptococcus_phage	5.9e-50	94.2
WP_085613680.1\|469311_470214_+	phage replisome organizer N-terminal domain-containing protein	J7KBV5	Streptococcus_phage	3.0e-118	87.5
WP_172448841.1\|471064_471202_+	hypothetical protein	J7KBQ4	Streptococcus_phage	3.5e-07	75.7
WP_021341157.1\|471212_471569_+	HTH domain-containing protein	A0A097PAU3	Streptococcus_pyogenes_phage	3.0e-50	99.2
WP_111677309.1\|471549_471804_+	hypothetical protein	Q938N0	Temperate_phage	1.8e-41	97.6
WP_021341163.1\|471824_472307_+	siphovirus Gp157 family protein	Q938M9	Temperate_phage	1.6e-49	98.8
WP_111677308.1\|472307_472982_+	ERF family protein	Q938M8	Temperate_phage	2.0e-103	97.3
WP_111677307.1\|472974_473394_+	single-stranded DNA-binding protein	Q938M7	Temperate_phage	3.1e-70	97.1
WP_011106686.1\|473399_473603_+	hypothetical protein	Q938M6	Temperate_phage	4.7e-32	100.0
WP_111677306.1\|473602_474043_+	RusA family crossover junction endodeoxyribonuclease	A0A097PAS0	Streptococcus_pyogenes_phage	4.5e-80	97.9
WP_111677305.1\|474039_474396_+	hypothetical protein	A0A1P8VVP9	Streptococcus_phage	2.1e-59	97.5
WP_023078268.1\|474637_474925_+	DUF1599 domain-containing protein	J7KDH9	Streptococcus_phage	5.1e-32	75.0
WP_111677303.1\|474908_475322_+	hypothetical protein	Q938M1	Temperate_phage	4.6e-34	62.4
WP_011018135.1\|475318_475489_+	hypothetical protein	Q938M0	Temperate_phage	8.5e-11	100.0
WP_111677589.1\|475485_475770_+	hypothetical protein	A0A097PAV1	Streptococcus_pyogenes_phage	2.6e-36	86.2
WP_032465979.1\|475774_475975_+	hypothetical protein	A0A0E3T873	Gordonia_phage	4.6e-08	45.3
WP_111677302.1\|475987_476389_+	hypothetical protein	NA	NA	NA	NA
WP_002987471.1\|476388_477024_+	SAM-dependent DNA methyltransferase	L0P368	Streptococcus_phage	5.5e-87	67.9
WP_111677301.1\|477294_477735_+	ArpU family transcriptional regulator	Q938L8	Temperate_phage	7.2e-78	97.3
WP_111677300.1\|478264_478735_+\|terminase	terminase small subunit	A0A141E1Y3	Streptococcus_phage	1.5e-52	72.8
WP_111677299.1\|478712_480020_+\|terminase	PBSX family phage terminase large subunit	A0A2H4IYR5	uncultured_Caudovirales_phage	5.9e-184	75.2
WP_111677298.1\|480031_481534_+\|portal	phage portal protein	C9W9H5	Streptococcus_virus	4.1e-141	54.3
WP_002984371.1\|481514_483140_+\|head	phage head morphogenesis protein	U6E9F1	Streptococcus_phage	1.1e-46	43.8
WP_010922213.1\|483130_483310_+	hypothetical protein	NA	NA	NA	NA
WP_111677297.1\|483369_483636_+	hypothetical protein	A0A097PAR8	Streptococcus_pyogenes_phage	1.7e-34	84.1
WP_085577357.1\|483770_484304_+	DUF4355 domain-containing protein	A0A141E0S7	Streptococcus_phage	1.4e-14	83.9
WP_111677296.1\|484313_484694_+\|head	head decoration protein	A0A0K2CNR0	Brevibacillus_phage	5.8e-07	37.1
WP_002984388.1\|484693_485770_+\|capsid	major capsid protein	A0A2H4J022	uncultured_Caudovirales_phage	5.5e-103	56.0
WP_002984390.1\|485779_486022_+	hypothetical protein	NA	NA	NA	NA
WP_002984392.1\|486035_486389_+\|head,tail	phage head-tail connector protein	A0A2H4J002	uncultured_Caudovirales_phage	9.7e-25	49.6
WP_002984393.1\|486385_486694_+	hypothetical protein	A0A2P1JTW8	Anoxybacillus_phage	5.7e-13	40.2
WP_002984399.1\|486674_487040_+	HK97 gp10 family phage protein	A0A097BY98	Enterococcus_phage	7.7e-17	46.3
WP_002984401.1\|487036_487426_+	hypothetical protein	Q38611	Lactococcus_phage	3.5e-44	68.2
WP_164552684.1\|487435_488083_+\|tail	phage major tail protein, TP901-1 family	D7RWD5	Brochothrix_phage	1.4e-40	52.0
WP_002984405.1\|488135_488495_+	hypothetical protein	D7RWD6	Brochothrix_phage	4.3e-20	44.5
WP_002984407.1\|488536_488866_+	hypothetical protein	A0A1P8BLR3	Lactococcus_phage	2.0e-11	41.5
WP_047235256.1\|488880_492147_+	tape measure protein	U6E979	Streptococcus_phage	1.6e-04	30.4
WP_002984411.1\|492178_492958_+\|tail	phage tail family protein	A3F655	Streptococcus_phage	1.9e-68	55.5
WP_111677295.1\|492954_495006_+\|tail	phage tail protein	A3F656	Streptococcus_phage	0.0e+00	84.6
WP_047235257.1\|495002_496010_+	hyaluronoglucosaminidase	A7J2A8	Streptococcus_phage	1.4e-137	71.7
WP_111677294.1\|496022_497933_+	gp58-like family protein	Q938J9	Temperate_phage	1.3e-120	67.8
WP_002987333.1\|497946_498108_+	hypothetical protein	NA	NA	NA	NA
WP_111677293.1\|498110_498728_+	DUF1366 domain-containing protein	Q938J7	Temperate_phage	2.7e-78	89.3
WP_002987582.1\|498737_499013_+	hypothetical protein	A7J2B2	Streptococcus_phage	2.6e-41	100.0
WP_003058873.1\|499009_499237_+\|holin	phage holin	A7J2B3	Streptococcus_phage	2.0e-31	100.0
WP_111677292.1\|499352_500558_+	glucosaminidase domain-containing protein	Q938J4	Temperate_phage	1.7e-206	84.3
WP_011017966.1\|500627_501062_-	hypothetical protein	NA	NA	NA	NA
WP_172451419.1\|501332_502133_-	streptodornase Sda3	NA	NA	NA	NA
WP_002984426.1\|502370_502559_+	hypothetical protein	A3F673	Streptococcus_phage	1.3e-20	83.1
WP_002989607.1\|503149_503764_+	TVP38/TMEM64 family protein	M1Q152	Streptococcus_phage	6.2e-51	52.3
502652:502729	attR	NA	NA	NA	NA
WP_111677291.1\|503890_504676_-	ABC transporter permease	NA	NA	NA	NA
WP_002989617.1\|505384_505756_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_111677290.1\|505940_509051_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	5.4e-119	29.8
WP_002984444.1\|509130_510144_+	6-phosphofructokinase	NA	NA	NA	NA
WP_002984447.1\|510206_511709_+	pyruvate kinase	NA	NA	NA	NA
WP_002984449.1\|511926_512484_+	signal peptidase I	NA	NA	NA	NA
WP_011284834.1\|512659_514474_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.2e-97	38.7
WP_011528695.1\|514669_515005_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_002984455.1\|515111_515753_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_002984457.1\|515762_516392_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-27	35.5
WP_002984460.1\|516407_517244_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_111677289.1\|517612_518386_+	CAMP factor pore-forming toxin Cfa	NA	NA	NA	NA
WP_111677288.1\|518755_519991_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_038433358.1\|520110_521433_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_111677287.1\|521962_524281_+	DNA helicase PcrA	A7KV33	Bacillus_phage	7.1e-132	41.3
WP_002984469.1\|524643_524892_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002984470.1\|524928_525540_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
WP_111677286.1\|525550_525739_+	DUF2273 domain-containing protein	NA	NA	NA	NA
WP_002984475.1\|525751_526291_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_111677285.1\|526331_526532_+	CsbD family protein	J7KJ36	Streptococcus_phage	2.3e-07	51.5
WP_172448840.1\|526542_527031_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_002984480.1\|527193_527835_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_002984482.1\|527977_528520_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_111677283.1\|528637_529339_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-36	37.5
WP_111677282.1\|529353_531990_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_002993908.1\|532081_532678_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_011528685.1\|532688_533645_+	aromatic acid exporter family protein	NA	NA	NA	NA
WP_023605124.1\|533741_535082_+	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_002989678.1\|535197_536082_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

DBSCAN-SWA_4

675578 : 784154

108

Streptococcus_phage(67.8%)

transposase,tRNA,capsid,holin,head,tail,portal,terminase,integrase

attL 729558:729606|attR 769804:769852

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111677233.1\|675578_676562_+\|transposase	IS30-like element IS1239 family transposase	H7BW61	unidentified_phage	1.0e-31	34.6
WP_003053708.1\|676651_678028_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_111677232.1\|678095_679505_-	dipeptidase PepV	NA	NA	NA	NA
WP_002989923.1\|679629_680232_-	nitroreductase family protein	NA	NA	NA	NA
WP_111677231.1\|680416_682213_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_111677230.1\|682314_683712_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_111677229.1\|685659_687309_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.8e-12	33.3
WP_111677228.1\|687444_688272_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_002984844.1\|688268_689078_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA
WP_002989934.1\|689094_689586_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA
WP_002989935.1\|689604_690030_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_111677227.1\|691384_691822_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_172451425.1\|692007_693486_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_111677225.1\|693641_695474_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	3.7e-19	41.0
WP_002984851.1\|696304_696937_-	TIGR01906 family membrane protein	NA	NA	NA	NA
WP_085634274.1\|696936_697701_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_111677222.1\|697700_698453_-	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA
WP_111677221.1\|698462_699593_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_111677220.1\|699655_700297_-	hypothetical protein	NA	NA	NA	NA
WP_111677219.1\|700420_701776_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_002984857.1\|701829_702786_-	YbbR-like domain-containing protein	NA	NA	NA	NA
WP_002984858.1\|702782_703634_-	TIGR00159 family protein	NA	NA	NA	NA
WP_172448839.1\|703735_705079_+	Mur ligase family protein	NA	NA	NA	NA
WP_111677217.1\|705078_705870_+	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_038433460.1\|705978_706968_-	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	2.8e-13	25.6
WP_111677216.1\|707200_709618_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA
WP_111677588.1\|709827_709989_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_111677215.1\|710292_712056_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-34	25.7
WP_111695148.1\|712382_713792_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_111695193.1\|713976_714975_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_049519307.1\|715033_716002_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_014407529.1\|716286_718194_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.4e-55	30.9
WP_002989987.1\|718239_718566_-	hypothetical protein	NA	NA	NA	NA
WP_111677213.1\|718595_719381_-	esterase family protein	NA	NA	NA	NA
WP_111677212.1\|719513_721175_-	ribonuclease J	NA	NA	NA	NA
WP_111677211.1\|721378_722137_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.0e-10	28.5
WP_014407527.1\|722133_723003_-	ABC transporter permease	NA	NA	NA	NA
WP_111677209.1\|723347_724346_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_111677208.1\|724699_726352_+	PavA family fibronectin-binding protein Fbp54	A0A1J0F9J4	Only_Syngen_Nebraska_virus	1.7e-07	41.0
WP_111677207.1\|726410_727658_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_111677206.1\|727647_728829_-	AI-2E family transporter	NA	NA	NA	NA
WP_002984880.1\|728886_729363_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
729558:729606	attL	NA	NA	NA	NA
WP_111677205.1\|729966_730677_-	streptococcal pyrogenic exotoxin SpeH	NA	NA	NA	NA
WP_080286815.1\|730702_731380_-	streptococcal pyrogenic exotoxin SpeI	A0A075M4C7	Staphylococcus_phage	1.2e-26	32.0
WP_038433469.1\|731646_732399_-	SH3 domain-containing protein	A3F665	Streptococcus_phage	1.0e-140	96.8
WP_021733507.1\|732400_732733_-\|holin	phage holin	A3F664	Streptococcus_phage	2.8e-50	98.2
WP_021733504.1\|732745_733066_-	hypothetical protein	A3F663	Streptococcus_phage	1.2e-50	99.1
WP_038433470.1\|733076_733688_-	DUF1366 domain-containing protein	Q938J7	Temperate_phage	8.8e-82	91.1
WP_002987333.1\|733690_733852_-	hypothetical protein	NA	NA	NA	NA
WP_038433471.1\|733860_735879_-	gp58-like family protein	Q938J9	Temperate_phage	3.9e-126	58.8
WP_038433249.1\|735888_736998_-	hyaluronoglucosaminidase	A7J2A8	Streptococcus_phage	1.3e-120	71.3
WP_038433248.1\|736997_738980_-\|tail	phage tail protein	A7J2A7	Streptococcus_phage	0.0e+00	93.9
WP_111677204.1\|738989_739832_-\|tail	phage tail family protein	A7J2A6	Streptococcus_phage	3.9e-157	97.5
WP_111677203.1\|739843_744226_-	tape measure protein	A7J2A5	Streptococcus_phage	1.3e-224	74.0
WP_011054867.1\|744240_744474_-	hypothetical protein	A7J2A4	Streptococcus_phage	6.4e-33	97.4
WP_023079225.1\|744548_745004_-	phage protein	A7J2A3	Streptococcus_phage	1.2e-75	98.7
WP_011054869.1\|745057_745657_-\|tail	phage major tail protein, TP901-1 family	A7J2A2	Streptococcus_phage	1.7e-90	97.1
WP_011054870.1\|745668_746028_-	hypothetical protein	A7J2A1	Streptococcus_phage	1.2e-57	98.3
WP_011106640.1\|746031_746376_-	HK97 gp10 family phage protein	A7J2A0	Streptococcus_phage	5.1e-55	98.2
WP_011054872.1\|746372_746651_-	hypothetical protein	A7J299	Streptococcus_phage	1.9e-47	100.0
WP_011054873.1\|746661_747018_-\|head,tail	phage head-tail connector protein	A7J298	Streptococcus_phage	4.6e-59	100.0
WP_002983429.1\|747029_747917_-	hypothetical protein	A7J297	Streptococcus_phage	2.1e-161	100.0
WP_011888933.1\|747929_748499_-	DUF4355 domain-containing protein	A7J296	Streptococcus_phage	1.9e-83	100.0
WP_011888934.1\|748666_748933_-	hypothetical protein	Q938K9	Temperate_phage	2.9e-37	96.6
WP_011054876.1\|748937_749126_-	hypothetical protein	A7J294	Streptococcus_phage	7.4e-24	100.0
WP_032465703.1\|749153_750602_-\|capsid	minor capsid protein	A7J293	Streptococcus_phage	1.2e-278	99.8
WP_038433243.1\|750561_752094_-\|portal	phage portal protein	A7J292	Streptococcus_phage	4.5e-292	99.8
WP_038433241.1\|752109_753387_-\|terminase	PBSX family phage terminase large subunit	A7J291	Streptococcus_phage	3.1e-246	99.8
WP_011106637.1\|753376_753829_-\|terminase	terminase small subunit	A7J290	Streptococcus_phage	6.9e-76	100.0
WP_011054881.1\|753918_754335_-	transcriptional regulator	A7J289	Streptococcus_phage	3.3e-72	99.3
WP_011054882.1\|754467_754740_-	hypothetical protein	A7J287	Streptococcus_phage	5.7e-25	73.3
WP_164972002.1\|754732_754903_-	hypothetical protein	A7J285	Streptococcus_phage	9.0e-21	92.3
WP_038433239.1\|754903_756226_-	DEAD/DEAH box helicase family protein	A7J284	Streptococcus_phage	5.1e-252	97.7
WP_015898615.1\|756222_756498_-	VRR-NUC domain-containing protein	A7J283	Streptococcus_phage	7.7e-46	97.8
WP_038433235.1\|756883_759268_-	DNA primase	A7J282	Streptococcus_phage	4.8e-277	94.8
WP_038433233.1\|759272_761195_-	DNA polymerase	A7J280	Streptococcus_phage	0.0e+00	99.1
WP_086934854.1\|761237_761801_-	DUF2815 family protein	D2J040	Enterococcus_phage	3.3e-51	58.5
WP_038433232.1\|761809_762967_-	DUF2800 domain-containing protein	A7J278	Streptococcus_phage	8.8e-216	97.9
WP_002988708.1\|762966_763266_-	hypothetical protein	A7J277	Streptococcus_phage	1.8e-43	100.0
WP_023611025.1\|763354_763558_-	hypothetical protein	A7J276	Streptococcus_phage	1.6e-32	98.5
WP_038433231.1\|763554_763905_-	hypothetical protein	NA	NA	NA	NA
WP_038433229.1\|764048_764435_-	hypothetical protein	A7J274	Streptococcus_phage	3.3e-58	89.0
WP_030127424.1\|764431_764635_-	hypothetical protein	NA	NA	NA	NA
WP_011888947.1\|764627_764798_-	hypothetical protein	A7J273	Streptococcus_phage	1.2e-20	89.3
WP_038433227.1\|764799_765111_-	hypothetical protein	A0A1S5SA25	Streptococcus_phage	8.2e-44	80.4
WP_011054585.1\|765188_765374_-	helix-turn-helix transcriptional regulator	A0A1X9I6I3	Streptococcus_phage	3.3e-16	72.1
WP_011284879.1\|765540_765780_+	hypothetical protein	NA	NA	NA	NA
WP_011285629.1\|765921_766728_+	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	7.9e-123	82.1
WP_038433225.1\|766939_767155_-	hypothetical protein	M1Q1B4	Streptococcus_phage	1.2e-25	79.7
WP_011888748.1\|767462_767813_+	helix-turn-helix transcriptional regulator	C5J980	Streptococcus_phage	1.1e-33	62.6
WP_011888747.1\|767815_768202_+	hypothetical protein	M1PFJ2	Streptococcus_phage	3.3e-34	55.5
WP_011285632.1\|768213_768480_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_011888953.1\|768607_769747_+\|integrase	site-specific integrase	A1EAB7	Streptococcus_phage	1.2e-119	56.3
WP_002984881.1\|769829_770870_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.1e-68	43.9
769804:769852	attR	NA	NA	NA	NA
WP_002990099.1\|771113_771707_-	dTDP-4-dehydrorhamnose 3,5-epimerase	H9NC63	Sphingomonas_phage	3.7e-08	28.2
WP_002992970.1\|771706_772576_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.4e-101	64.6
WP_111695149.1\|772633_773740_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_002984887.1\|773779_774568_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_002990104.1\|774557_775244_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_111677201.1\|775315_775972_-	endonuclease III	NA	NA	NA	NA
WP_011184446.1\|775968_776652_-	DnaD domain-containing protein	Q938N2	Temperate_phage	2.2e-09	36.8
WP_002990109.1\|776732_777251_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-30	42.4
WP_111677200.1\|777400_779611_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.6e-71	30.2
WP_111677199.1\|779607_780372_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_009881223.1\|780371_781301_-	ribonuclease Z	NA	NA	NA	NA
WP_002990114.1\|781315_781951_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_111677198.1\|781943_783182_-	GTPase HflX	NA	NA	NA	NA
WP_011184442.1\|783254_784154_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA

DBSCAN-SWA_5

878869 : 889472

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111677169.1\|878869_880012_-	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	8.3e-25	27.3
WP_111677168.1\|880246_880687_+	hypothetical protein	NA	NA	NA	NA
WP_002990257.1\|880716_881985_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_011017639.1\|882072_883425_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	7.0e-31	24.2
WP_002985134.1\|883645_883987_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	5.9e-19	40.2
WP_002990262.1\|884047_885214_-	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-34	32.8
WP_002985140.1\|885307_885994_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	7.0e-88	68.9
WP_002985142.1\|885990_887154_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.4e-143	65.1
WP_111677167.1\|887261_889472_+	LTA synthase family protein	W6LM83	Streptococcus_phage	8.5e-268	68.9

DBSCAN-SWA_6

1117689 : 1176643

Streptococcus_phage(33.33%)

tRNA,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002990771.1\|1117689_1117890_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_111677089.1\|1117902_1118130_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002987564.1\|1119353_1119536_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_002994504.1\|1119550_1119796_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002985741.1\|1120753_1121230_-	NUDIX hydrolase	NA	NA	NA	NA
WP_111677088.1\|1121249_1122146_-	GTPase Era	NA	NA	NA	NA
WP_002985746.1\|1122265_1122673_-	diacylglycerol kinase	NA	NA	NA	NA
WP_002985748.1\|1122653_1123151_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_111677087.1\|1123309_1123885_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_002985751.1\|1123930_1124983_-	PhoH family protein	W8D063	Erwinia_phage	1.2e-46	50.0
WP_111677086.1\|1125141_1126914_-	oleate hydratase	NA	NA	NA	NA
WP_111677085.1\|1127227_1128397_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XB61	Gordonia_phage	5.5e-16	40.5
WP_002985757.1\|1128552_1128768_-	YozE family protein	NA	NA	NA	NA
WP_002985759.1\|1128764_1129274_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_011889099.1\|1129346_1130204_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_002985763.1\|1130312_1130870_-	ribosome recycling factor	NA	NA	NA	NA
WP_002985765.1\|1130898_1131627_-	UMP kinase	NA	NA	NA	NA
WP_002985768.1\|1131951_1132641_-	50S ribosomal protein L1	NA	NA	NA	NA
WP_111677084.1\|1132746_1133172_-	50S ribosomal protein L11	NA	NA	NA	NA
WP_010921962.1\|1133415_1133769_+	DUF3397 domain-containing protein	NA	NA	NA	NA
WP_111677083.1\|1133839_1136245_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	3.8e-88	51.7
WP_111677082.1\|1136461_1137268_+	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.9e-20	36.6
WP_002990814.1\|1137414_1138269_-	metal ABC transporter permease	NA	NA	NA	NA
WP_021299377.1\|1138269_1138995_-	metal ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.1e-17	32.6
WP_111695164.1\|1139058_1139991_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021733524.1\|1140136_1140784_+	metal-dependent transcriptional regulator	NA	NA	NA	NA
WP_111677081.1\|1140882_1141224_-	hypothetical protein	NA	NA	NA	NA
WP_011284562.1\|1141374_1142070_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_002990826.1\|1142089_1142341_-	hypothetical protein	NA	NA	NA	NA
WP_002990829.1\|1142340_1142895_-	NUDIX hydrolase	NA	NA	NA	NA
WP_111695165.1\|1142928_1144311_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L4K9	Tupanvirus	8.5e-32	36.0
WP_002993065.1\|1144483_1145821_-	MFS transporter	NA	NA	NA	NA
WP_111674497.1\|1146153_1147113_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_021340581.1\|1147188_1147887_-	3-oxoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.2e-10	25.2
WP_111677079.1\|1147879_1148116_-	DUF2829 domain-containing protein	NA	NA	NA	NA
WP_111677078.1\|1148475_1149132_+	hypothetical protein	NA	NA	NA	NA
WP_111677077.1\|1149400_1150099_+	streptococcal pyrogenic exotoxin SpeJ	NA	NA	NA	NA
WP_111677076.1\|1150400_1150733_-	hypothetical protein	NA	NA	NA	NA
WP_111677075.1\|1151411_1152113_+	hypothetical protein	NA	NA	NA	NA
WP_002995935.1\|1152207_1152459_-	hypothetical protein	NA	NA	NA	NA
WP_111677576.1\|1152646_1153099_-	hypothetical protein	NA	NA	NA	NA
WP_111677074.1\|1153555_1154308_+	ADP-ribosyltransferase	NA	NA	NA	NA
WP_111677073.1\|1154511_1156692_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.5e-171	43.2
WP_002990870.1\|1156658_1157147_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	1.3e-11	37.5
WP_002995917.1\|1157150_1158164_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	5.5e-97	53.4
WP_111677072.1\|1158658_1160659_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	4.6e-87	35.1
WP_111695166.1\|1160958_1161606_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_111677070.1\|1162376_1167323_-\|protease	CXC chemokine-degrading serine protease SpyCEP	NA	NA	NA	NA
WP_021340507.1\|1167588_1168770_-	L-lactate oxidase	NA	NA	NA	NA
WP_111677069.1\|1169003_1169831_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	5.8e-129	79.3
WP_014407341.1\|1169904_1170261_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.8e-39	65.0
WP_111677068.1\|1170558_1171188_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_002985833.1\|1171234_1171627_-	hypothetical protein	NA	NA	NA	NA
WP_111677067.1\|1171653_1172517_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.9e-114	74.3
WP_002985838.1\|1172521_1172845_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.3e-28	59.4
WP_111677066.1\|1173248_1173488_-	Tpl protein	NA	NA	NA	NA
WP_111695167.1\|1173506_1174382_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	3.6e-68	46.6
WP_014635306.1\|1174399_1175035_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.0e-65	63.4
WP_002985847.1\|1175282_1175558_-	YlbG family protein	NA	NA	NA	NA
WP_002985850.1\|1176052_1176643_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.6e-54	55.7

DBSCAN-SWA_7

1535714 : 1546784

Synechococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010921776.1\|1535714_1536839_+	SH3 domain-containing protein	F8HGP2	Streptococcus_phage	7.7e-07	28.6
WP_002987985.1\|1536934_1537798_+\|transposase	IS982-like element ISSpy2 family transposase	NA	NA	NA	NA
WP_111676983.1\|1537867_1539415_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	3.4e-45	51.3
WP_111676982.1\|1539598_1540153_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.6e-24	35.0
WP_111676981.1\|1540320_1541343_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	1.4e-63	42.0
WP_009880323.1\|1541370_1542825_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
WP_111676980.1\|1543058_1546784_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	3.0e-39	27.4

DBSCAN-SWA_8

1762711 : 1778430

Streptococcus_phage(61.54%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014411911.1\|1762711_1763503_-	helix-turn-helix transcriptional regulator	A0A1S5SE31	Streptococcus_phage	7.5e-09	48.5
WP_003045754.1\|1763570_1763828_+	hypothetical protein	NA	NA	NA	NA
WP_002992501.1\|1763882_1764290_+	hypothetical protein	A0A1X9I5V7	Streptococcus_phage	1.3e-49	69.4
WP_111677541.1\|1764303_1764921_+	Rha family transcriptional regulator	A0A159B6D5	Gordonia_phage	2.2e-11	38.8
WP_023611295.1\|1765154_1765496_+	hypothetical protein	NA	NA	NA	NA
WP_023611263.1\|1765482_1765704_+	hypothetical protein	NA	NA	NA	NA
WP_010922764.1\|1765706_1765898_+	hypothetical protein	NA	NA	NA	NA
WP_003058810.1\|1765909_1766239_+	hypothetical protein	NA	NA	NA	NA
WP_001100459.1\|1766241_1766514_+	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	6.1e-19	60.0
WP_010922767.1\|1766514_1767372_+	replication protein	A0A1X9I6L2	Streptococcus_phage	4.5e-124	74.8
WP_002992487.1\|1767340_1769029_+	DNA primase	A0A1X9I717	Streptococcus_phage	2.5e-259	82.1
WP_000694577.1\|1769315_1769489_+	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	1.9e-10	59.6
WP_014407944.1\|1769494_1769668_+	hypothetical protein	NA	NA	NA	NA
WP_023611171.1\|1769669_1770179_+	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	1.1e-29	63.5
WP_002992480.1\|1770252_1770741_+	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.4e-45	54.9
WP_032461242.1\|1771139_1771502_+	DUF1492 domain-containing protein	A0A2H4JFS1	uncultured_Caudovirales_phage	1.3e-05	29.9
WP_111677542.1\|1771476_1771860_+	ArpU family transcriptional regulator	Q938L8	Temperate_phage	3.7e-14	41.7
WP_111677543.1\|1772060_1772723_+	hypothetical protein	NA	NA	NA	NA
WP_002982175.1\|1773119_1775675_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.0e-43	23.4
WP_111677544.1\|1775661_1775868_-	hypothetical protein	NA	NA	NA	NA
WP_111677545.1\|1776010_1776448_-	arginine repressor	NA	NA	NA	NA
WP_111677546.1\|1776738_1778430_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	7.1e-73	32.2

Anti-CRISPR protein detection

Acr_ID: NZ_LS483344.1|WP_001104151.1|465799_465958_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_LS483344.1|WP_002984301.1|467915_468152_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_LS483344.1|WP_111677311.1|468540_468837_+|MerR-family-transcriptional-regulator

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_LS483344.1|WP_001104151.1|465799_465958_+|hypothetical-protein

465799_465958_+

52 aa aa

443408-536082

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LS483344_1	TypeI	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	497038-497071	2
NZ_LS483344_1	TypeI	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	497039-497071	2

1. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to NZ_LS483344 position: 497038-497071, mismatch: 2

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

2. spacer 1.8|279296|33|NZ_LS483344|CRT matches to NZ_LS483344 position: 497039-497071, mismatch: 2

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

NZ_LS483344.1|WP_002984301.1|467915_468152_-|hypothetical-protein

467915_468152_-

78 aa aa

443408-536082

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LS483344_1	TypeI	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	497038-497071	2
NZ_LS483344_1	TypeI	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	497039-497071	2

1. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to NZ_LS483344 position: 497038-497071, mismatch: 2

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

2. spacer 1.8|279296|33|NZ_LS483344|CRT matches to NZ_LS483344 position: 497039-497071, mismatch: 2

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

NZ_LS483344.1|WP_111677311.1|468540_468837_+|MerR-family-transcriptional-regulator

468540_468837_+

98 aa aa

443408-536082

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LS483344_1	TypeI	1.2\|279295\|34\|NZ_LS483344\|PILER-CR	279295-279328	34	497038-497071	2
NZ_LS483344_1	TypeI	1.8\|279296\|33\|NZ_LS483344\|CRT	279296-279328	33	497039-497071	2

1. spacer 1.2|279295|34|NZ_LS483344|PILER-CR matches to NZ_LS483344 position: 497038-497071, mismatch: 2

agtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
agtccctcttgcggcaatctggcgacagtatcat	Protospacer
*********** **********.***********

2. spacer 1.8|279296|33|NZ_LS483344|CRT matches to NZ_LS483344 position: 497039-497071, mismatch: 2

gtccctcttgaggcaatctggtgacagtatcat	CRISPR spacer
gtccctcttgcggcaatctggcgacagtatcat	Protospacer
********** **********.***********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483344

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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