CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483346	Streptococcus sanguinis strain NCTC11085 chromosome 1	4 crisprs	WYL,DEDDh,csa3,DinG,csm6,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483346_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483346_1

289049-289161

Orphan

Consensus_repeat	Method
CTTAATGAGACAAGCCGTGGGCGCAGTCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LS483346_1

>merge|NZ_LS483346|1|289049-289161|CRISPRCasFinder
CTTAATGAGACAAGCCGTGGGCGCAGTCGAATTTAGAGGCATTGATGCAGTTTGAGTTTTAGCGAGAACTACGTTCCGCAAAAACTTAATGAGACAATCCGTGGGCGCAGTCG

>NZ_LS483346|1|1|289049-289161|CRISPRCasFinder
CTTAATGAGACAAGCCGTGGGCGCAGTCG	AATTTAGAGGCATTGATGCAGTTTGAGTTTTAGCGAGAACTACGTTCCGCAAAAA
CTTAATGAGACAATCCGTGGGCGCAGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483346.1\|WP_009660079.1\|288195_288336_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002907960.1\|287342_287663_+\|DUF4176-domain-containing-protein	unknown	unknown	gnl\|CDD\|379364
NZ_LS483346.1\|WP_002926092.1\|298375_302764_+\|PolC-type-DNA-polymerase-III	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|234767
NZ_LS483346.1\|WP_002926093.1\|297660_298209_-\|DUF1307-domain-containing-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926135.1\|283957_284242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926104.1\|293961_295218_+\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|272878
NZ_LS483346.1\|WP_002926127.1\|285392_285755_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926111.1\|292929_293733_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_LS483346.1\|WP_002926090.1\|302838_304749_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|163057
NZ_LS483346.1\|WP_032905620.1\|297223_297604_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377953
NZ_LS483346.1\|WP_002926114.1\|291596_291932_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235822
NZ_LS483346.1\|WP_002893837.1\|288721_288979_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926117.1\|289442_291419_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_LS483346.1\|WP_002907966.1\|292161_292911_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|184840
NZ_LS483346.1\|WP_002926096.1\|295283_297134_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_LS483346.1\|WP_002926125.1\|285744_287325_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_LS483346.1\|WP_002911634.1\|280335_281100_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LS483346.1\|WP_002926129.1\|285107_285380_+\|TIGR04197-family-type-VII-secretion-effector	unknown	unknown	gnl\|CDD\|275045
NZ_LS483346.1\|WP_002926123.1\|287652_288063_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926136.1\|281557_283696_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616

Protein	Function_ID	Function_description	E-value
NZ_LS483346.1\|WP_002907960.1\|287342_287663_+\|DUF4176-domain-containing-protein	gnl\|CDD\|379364	pfam13780, DUF4176, Domain of unknown function (DUF4176).	3.49235e-20
NZ_LS483346.1\|WP_002926092.1\|298375_302764_+\|PolC-type-DNA-polymerase-III	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0
NZ_LS483346.1\|WP_002926104.1\|293961_295218_+\|RIP-metalloprotease-RseP	gnl\|CDD\|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	9.29939e-59
NZ_LS483346.1\|WP_002926111.1\|292929_293733_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.63298e-71
NZ_LS483346.1\|WP_002926090.1\|302838_304749_+\|AAA-family-ATPase	gnl\|CDD\|163057	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination].	1.04887e-71
NZ_LS483346.1\|WP_032905620.1\|297223_297604_+\|PH-domain-containing-protein	gnl\|CDD\|377953	pfam08000, bPH_1, Bacterial PH domain. This family contains many bacterial hypothetical proteins. The structures of Structure 3hsa and Structure 3dcx show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response.	1.59306e-58
NZ_LS483346.1\|WP_002926114.1\|291596_291932_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235822	PRK06531, yajC, preprotein translocase subunit YajC; Validated.	2.27802e-53
NZ_LS483346.1\|WP_002926129.1\|285107_285380_+\|TIGR04197-family-type-VII-secretion-effector	gnl\|CDD\|275045	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family. Members of this protein family are similar in length and sequence (although remotely) to the WXG100 family of type VII secretion system (T7SS) targets, described by family TIGR03930. Phylogenetic profiling shows that members of this family are similarly restricted to species with T7SS, marking this family as a related set of T7SS effectors. Members include SACOL2603 from Staphylococcus aureus subsp. aureus COL. Oddly, members of family pfam10824 (DUF2580), which appears also to be related, seem not to be tied to T7SS.	1.38099e-14
NZ_LS483346.1\|WP_002926117.1\|289442_291419_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_LS483346.1\|WP_002907966.1\|292161_292911_+\|isoprenyl-transferase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	8.04168e-174
NZ_LS483346.1\|WP_002926096.1\|295283_297134_+\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_LS483346.1\|WP_002926125.1\|285744_287325_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00151978
NZ_LS483346.1\|WP_002911634.1\|280335_281100_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	6.18536e-143
NZ_LS483346.1\|WP_002926136.1\|281557_283696_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0

>NZ_LS483346.1|WP_002893837.1|288721_288979_+|hypothetical-protein
MKKLDITTMPDYRKVEAVVQLLVNGTLTSYRIATDANISKMSILTLTKGTSKIKNITYQTAMALINWYEENHEKYGITIHQKAAG
>NZ_LS483346.1|WP_009660079.1|288195_288336_-|hypothetical-protein
MLTFLKSKQLHEASMLVYQRERQYLEENKEQMTSYSSYALASISKL
>NZ_LS483346.1|WP_002926123.1|287652_288063_+|hypothetical-protein
MKRKTIIFSGLVLPALAFGALFLFASLNEASLDGVYYRQIEDGADGFSGLDKETILNLRDQQVTFYKEGLEEKGSIDRKAGSIRLGSKFYSYVHNGDLLMLKLKEDPTNSKESLYLVRKDSPSAKRLEQKSKSQSP
>NZ_LS483346.1|WP_002907960.1|287342_287663_+|DUF4176-domain-containing-protein
MKQQLPIGSVVMVKGSSQPLMIVSQFPVTTLDGQTGYFDFGAVTLPSGLTGKELIFFNKEDIERLVFVGYVDVTFQDLLQRYDELIADIPYPRLTVPERAGAADEA
>NZ_LS483346.1|WP_002926125.1|285744_287325_+|hypothetical-protein
MGAKMELPASNQQAGSMATAGQVRIAAYESAMQAMENFVGESGLTGTAYDSAKTYCQGMFLPLFKAAILFEEELVKAGSDLPSRYVSEVAEESLDQDVLESQIASYDQTIDSQNQALTEANKQKDVADSTKSSIQNAITAAQDKRHELQDKLNKLLAFYSSSATIFDNLPGLAAALDQALSLMTEGFANFNGSFVLPSPDRMTWTQAVETAWESKKAVEAAFQKVMDKLDSGEELTPEDIQAVQAYLERYPSRNIPQALRSHLEEAVQQADPILKARLDQAKADQASGSLSQTAFNGLWAGAMLGFMKQAGNQTGAQTVAMPAAKQSAGSSGGSSGFWDFLFGHTNTLEHSKKTDWSTGWLYSTYAKYSTTVEEDDPGIFKYKTNNGIFNGVAVDLGVASVDIDASDWKLNASPQINVGGYHIGVNGSVGLNTDTGWLPMPEINLSLHAGTEQHDTAAGLKVSTDIWNGMVGVYGVDSNISKDSNGNKTVNSVETGAQTVNGLEVAAVVVAVTVAPVVALPALALA
>NZ_LS483346.1|WP_002926127.1|285392_285755_+|hypothetical-protein
MKNSQTLAAERLQAFEKLDKAEEQKRRLDRFEEDIDYLYDRGLLALRELDYLPLTAKDSQDFYDIMGLVEHSHRLLDLDIQDGQDRLDKERKKLDRQIETIQGQYRQALEAEEKEAGYGR
>NZ_LS483346.1|WP_002926129.1|285107_285380_+|TIGR04197-family-type-VII-secretion-effector
MSDIKSDNGLAASHANSFSAASSQIGAASQVDKDVISHLEGNSRAGEEIDHSSTASADIADKITSFSQLLQSVAEEFQATDQGLAADIEG
>NZ_LS483346.1|WP_002926135.1|283957_284242_+|hypothetical-protein
MKQSITTIKRNVIIFAFFSTLCGWIGYVVDKVTGQAHYENIGTEIGSGSLGMLIWLVTPLICTIFLRSFGGDGWKEAGFPLILKITKNYTLLVF
>NZ_LS483346.1|WP_002926136.1|281557_283696_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MNNNYNNFNNMDDLFNQLMGRMGGYNSEHRRYLINGREVTPEEFAQYRATGKLPGQGTGEQTGQATAQGPKQDGILAKLGRNLTQEARDGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISVDISGLEAGTQYRGSFEENIQNLVNEVKEAGNIILFFDEIHQILGAGSIGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTILKNAALARRFNEVKVNAPSAEDTYQILRGIRDLYEKHHNVILPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPVTDVHAVENEIAEQKDKQEAAVEKEDYEAALNAKTRIEELEKKIQNHTEDMKVTATVNDVAESVERMTGVPVSQMGASDIERLKGMNDRLKAKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEAGLEEDAEKPDLMDRLKAYFRPEFLNRFNAVIEFSHLKKEDLMEIVNLMLFEVNQTLSKKEIDLAVSDAAKEFLRDAGYDQVMGVRPLRRVIEQQIRDKVTDFHLDNLDAKHLMADLEDGVLVIKEKGAAASEEDKQAE
>NZ_LS483346.1|WP_002911634.1|280335_281100_+|amino-acid-ABC-transporter-ATP-binding-protein
MLEVKHISKRFGEHQVLADVSLKVNQGDVVVILGPSGSGKTTFLRCLNHLEKADGGQLTLSGKDYDLAKLSKKEILEIRRKTAFVFQHYNLFANKTALENILEGLVIARKIPREEALEIAEESLKRVGLLAYKDYYPSQLSGGQQQRIGIARAIAVKPDVILLDEPTSALDPELVGEVLSVMKQLAQEGVTMVVVTHEMSFARDVANHVIFMDGGHIIEENPPQEFFSSPKEERTKQFLSRILSDASYSVEYMI
>NZ_LS483346.1|WP_002926117.1|289442_291419_+|transketolase
MSQLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQLRINPEQPNWINRDRFVLSAGHGSMLLYALLHLSGFKDVSMEEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNREGYPIFDHYTYVICGDGDLMEGVSAEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTEDVRARYEAYGWHTALVEDGTDLAAIDAAINEAKASGKPSLIEVKTVIGYGSPNKQGTNAVHGAPLGAEEAEATRKALGWDYAPFEIPEEVYADYRTNVAERGAAAYDAWKQLVEDYKQAHPELAAEVTAIIAGQDPVEIKPEDFPVLENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNRNIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLRAIPNLTVFRPADARETQAAWYLALKSQSTPTALVLTRQNLTVEEGTNFDKVAKGAYVVYETGADFDTILLASGSEVNLAVAAAKALAAEGTKIRVVSVPSTELFDAQDAAYKEEILPNAVRRRVAIEMAASQPWYKYVGLDGAVIGIDQFGASAPAGKVLEEYGFTVEHVAEVVKNLK
>NZ_LS483346.1|WP_002926114.1|291596_291932_+|preprotein-translocase-subunit-YajC
MNPIMLIVFAVVLVGMTYFQMRAQKKQAQQRMESLNKLQKGYEVITIGGLYGTVDEVDTDKKTVVLDVDGVYLTFELTAIKTVLPLTEGIPAVAGGEGSVDLPEEESAIEE
>NZ_LS483346.1|WP_002907966.1|292161_292911_+|isoprenyl-transferase
MFSFKKKEKLNAPLNVPKHIAVIMDGNGRWAKKRMQPRVFGHKAGMETLQRVTIAAKEMGVQVLTVYAFSTENWSRPEKEVSFIMNLPVEFYDRYVPELHKNNVKIQMIGDTAKLPKATFEALEKAESLTKLNTGLILNFALNYGGRYEINQAVKLIAQDVLDAKLSPGDITEEVIGNYLYTSNLPKMLRDPDLVIRTSGELRLSNFLPWQSAYSELYFTDILWPDFDEKALKAAIAEYSRRNRRFGGV
>NZ_LS483346.1|WP_002926111.1|292929_293733_+|phosphatidate-cytidylyltransferase
MSKNLQKRLIFGGIALAIFIPLVLTGGVIFQIFVGLLAMLAVHEFLQMKGLPTATIEGVLAMLAAFVLTLPLENYLKFLPVDGNVVAYGLVVFLLLISTVLGSNYTFEDAAYPITASFYVGLGFNALIDARLMNIDKVLLALFIVWATDSGAYLVGVRFGKRKLAPRVSPNKTIEGSLGGILSAVLVTGIFMLVRPQVATPYNAFVFLILAVLFSIAGQLGDLVESSVKRHFGVKDSGKFIPGHGGVLDRFDSLLFVFPLMHFFGLF
>NZ_LS483346.1|WP_002926104.1|293961_295218_+|RIP-metalloprotease-RseP
MQFITFIIIFGIIVVVHEFGHFYFAKKSGILVREFAIGMGPKIFSHIGKDGTAYTIRILPLGGYVRMAGWGEDSTDIKVGTPASLTLDAEGKVVRINLSGKKVDQTALPMNVTGFDFEEKLEITGLVLDELKTYAVDHDATIVEEDGTEVRIAPLDVQYQNASIWGRLITNFAGPMNNFILSVLVFMLLAFVQGGVRDENSNHFQVMDGSAIAAAGVQNNDQILKINDYKISNWADLTSALAKITGKSKEAPTLSVTYKHDSETKEITVQPKKDGNRYLLGVSPTVKTGFWDKVVGGFTAAWSTTVRILSALKDIIFNFNINKLGGPVAIYNFSSQAAEQGLPAVLSLLAMLSLNIGIFNLIPIPALDGGKIVLNILEAIRRKPLKRETETYITLSGVAIMVILMIAVTWNDIMKLFF
>NZ_LS483346.1|WP_002926096.1|295283_297134_+|proline--tRNA-ligase
MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREEFDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRDSVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSAYEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITPDRTDVNRWVVLDKSVASFDEIPEDVQEAIRTELTSWMVSGEDTIAYSSESSYAANLEMATDEYKPAGRVVTEEEVARVSTPDCKTIDEVAVFLGLDESQTIKTLVYMADEAPVVALLVGNDQLNEVKLKNHLAADFFDVASEDQVRQLLGAGFGSLGPVNLPEGVRIIADRKVQDLANAVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKKAAEGIVEVKIKATGDTIEVHADNLLETLSILTK
>NZ_LS483346.1|WP_032905620.1|297223_297604_+|PH-domain-containing-protein
MGLFSGLLGNASQKDIEKTERQLEDILTTTENVELAFSLIRDLIVFTDKRLILVDKQGMTGKKTSYKSFPYRSISRFSVETAGHFDLDAELKIWVSSAQEPAEVLQFTSDRSVIAIQKALAEAVLR
>NZ_LS483346.1|WP_002926093.1|297660_298209_-|DUF1307-domain-containing-protein
MKKILLASACLLTLTACSMPNQHKQENKPKQNQSQSQSKVKEEKTKTKTFSRSVSDDSVIKVKVYYQKDKITAFSFITEKEIPDEEKGKSRKELADIYQKDMESSPNFEAVHKTKGIESEVRISADKKIVHQSVTLDLNKIDIDEAAAAFGVTNQEDTIFERLKDKPEDFFEAIKEQGLTEE
>NZ_LS483346.1|WP_002926092.1|298375_302764_+|PolC-type-DNA-polymerase-III
MSNKFEILMHQLDMPLEMRNSEAFLNAEIEEVLVHKVSRVWEFHFSFANILPIEIFRELQKRLAQEFSKTGNQAIFEIHCQAPQVSDELLQAYYQLAFEEGPCASHGFKSLYQDLRVHLDGDKLLIEGASTIDTEHFRKNHLPNLSQQLVKYGFPQLTCQVQHSDELTQQQAENFQAENDKIVQAANEEALKAMESLQQMAPPPEEKPAYDFQARKAAAKPKLDKAEITPMIEVQTEENRLVFEGMVFDLEQKVTRTGRVLLNFKMTDYTSSFSLQKWMKNEEEAKKFDMIKKGAWLRVRGNVEMNNFTRDLTMNVQDVQAVTHYERKDLMPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEETVAELTYQKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVGSRGSVGSSFVATMIGITEVNPLSPHYVCGTCQYSEFITDGSYGSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFVKGYERDYGKFYRDAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDENVLKLDVLGHDDPTMIRKLQDLSGVDPNDIPMDDAGVMALFSGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEEERNGYIAAMKENNVPEWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPVYYYCAYFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKRGGLSSTLVEKMDDMGILGNMPEDNQLSLFDEFF
>NZ_LS483346.1|WP_002926090.1|302838_304749_+|AAA-family-ATPase
MGEKMFFYQIEFSKMNKNIKEVDENFIQENQWFYCFKSQTCLYVVGVTEHTKEDLFDKLKTLGVNDEEYTDFKVKSISKSEYLKEVGNKYSAQIGQLFLHSDEREFSNSDGFAITDLERRDLNIIGLNEFQEYVLKLKMFLNNQKERRRKKEKVLVENQFLIFKGSLGTGKKFAIKYLMRLLNVKSKTILKDGFSVNFESEQRLVIIKDYSTMHPRRKEELKNNIVEATGGRIYIFLVESDSIAYEISREFLPLFHVVYELNFPPYSYNELVDIIKFRLGDYGFHLEEDQIKLLSNHNCLTNSYDSCYFAQKIIEYNVIESNLINGKQNFSLPSDLFCMKGCNNPLATNSNTLKELDRLVGLSTVKNMIHRILAYFSISQRRLEINSSPVRPSMHFMFSGASGTGKTIVARLLTKIFYKHGIIKSNVLIEVGRSDLIGEYVGQTAPKVKRLFDNAKGGILFIDEAYSLIPQGERDFANEAIPTIIQEMENNRNDVIVIFAGYTEMMEEFLNINPGLASRISRKIHFENYNKYELYDILTLMADQQGYIVDKKCKTILLTYFEKCLCSESFGNARYVRKLFELVLYIQAERLMKEEIVSDLTDAELSYLSYIDFEKAIHDLEKKENNLKIIGFRTDI

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Crispr_ID: NZ_LS483346_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483346_2

1293219-1293306

TypeIII-A

Consensus_repeat	Method
GAACCTTGGATTAAGGAGAACTCGC	CRISPRCasFinder

1 spacers

csm6

The CRISPR arrays of NZ_LS483346_2

>merge|NZ_LS483346|2|1293219-1293306|CRISPRCasFinder
GAACCTTGGATTAAGGAGAACTCGCTTAACCGAGTGATTATCCGCAACCTAAAACAGTTCCCTGAACCTTGGATTAAGGATAACTCGC

>NZ_LS483346|2|2|1293219-1293306|CRISPRCasFinder
GAACCTTGGATTAAGGAGAACTCGC	TTAACCGAGTGATTATCCGCAACCTAAAACAGTTCCCT
GAACCTTGGATTAAGGATAACTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483346.1\|WP_032908294.1\|1286020_1286734_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_LS483346.1\|WP_002924566.1\|1285262_1286024_-\|hypothetical-protein	csm6	cd09746_csm6_CAS-III-A	gnl\|CDD\|312974
NZ_LS483346.1\|WP_002924532.1\|1296873_1298358_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_LS483346.1\|WP_002924537.1\|1294825_1295266_-\|flavodoxin	unknown	unknown	gnl\|CDD\|180922
NZ_LS483346.1\|WP_002924548.1\|1292750_1293014_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|168880
NZ_LS483346.1\|WP_002924561.1\|1287068_1287881_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_LS483346.1\|WP_002895366.1\|1299505_1299796_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_LS483346.1\|WP_002924552.1\|1292053_1292380_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|172717
NZ_LS483346.1\|WP_002924558.1\|1289135_1289813_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_LS483346.1\|WP_002924550.1\|1292376_1292751_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184575
NZ_LS483346.1\|WP_002924540.1\|1293318_1294701_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_LS483346.1\|WP_002915046.1\|1302371_1303409_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370676
NZ_LS483346.1\|WP_002924525.1\|1299825_1300644_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350624
NZ_LS483346.1\|WP_002924534.1\|1295371_1296307_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_LS483346.1\|WP_002924520.1\|1303507_1303822_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_LS483346.1\|WP_002924522.1\|1300624_1302355_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987
NZ_LS483346.1\|WP_002895374.1\|1296414_1296657_+\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_LS483346.1\|WP_002924559.1\|1287910_1289122_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_LS483346.1\|WP_002924554.1\|1291587_1291935_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_LS483346.1\|WP_032908156.1\|1289989_1291363_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392

Protein	Function_ID	Function_description	E-value
NZ_LS483346.1\|WP_032908294.1\|1286020_1286734_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.8418e-154
NZ_LS483346.1\|WP_002924566.1\|1285262_1286024_-\|hypothetical-protein	gnl\|CDD\|312974	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.01666e-19
NZ_LS483346.1\|WP_002924532.1\|1296873_1298358_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	1.97018e-07
NZ_LS483346.1\|WP_002924537.1\|1294825_1295266_-\|flavodoxin	gnl\|CDD\|180922	PRK07308, PRK07308, flavodoxin; Validated.	1.73563e-78
NZ_LS483346.1\|WP_002924548.1\|1292750_1293014_-\|chorismate-mutase	gnl\|CDD\|168880	PRK07248, PRK07248, chorismate mutase.	2.68554e-36
NZ_LS483346.1\|WP_002924561.1\|1287068_1287881_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	1.71234e-166
NZ_LS483346.1\|WP_002895366.1\|1299505_1299796_-\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	3.16905e-19
NZ_LS483346.1\|WP_002924552.1\|1292053_1292380_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|172717	PRK14229, PRK14229, fluoride efflux transporter CrcB.	7.07962e-55
NZ_LS483346.1\|WP_002924558.1\|1289135_1289813_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	1.34947e-117
NZ_LS483346.1\|WP_002924550.1\|1292376_1292751_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184575	PRK14221, PRK14221, fluoride efflux transporter CrcB.	4.45083e-57
NZ_LS483346.1\|WP_002924540.1\|1293318_1294701_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_LS483346.1\|WP_002915046.1\|1302371_1303409_-\|hypothetical-protein	gnl\|CDD\|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	2.62491e-07
NZ_LS483346.1\|WP_002924525.1\|1299825_1300644_-\|M15-family-metallopeptidase	gnl\|CDD\|350624	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins. This L,D-carboxypeptidase family includes LdcB LD-Carboxypeptidase from Streptococcus pneumoniae, Bacillus anthracis, and Bacillus subtilis, and L,D-carboxypeptidase DacB from Streptococcus pneumonia and Lactococcus lactis. These enzymes are active against cell-wall-derived tetrapeptides and synthetic tetrapeptides lacking the sugar moiety but are inactive against tetrapeptides terminating in L-alanine. L,D-carboxypeptidase DacB plays a key role in the remodeling of S. pneumoniae peptidoglycan during cell division. It adopts a zinc-dependent carboxypeptidase fold and acts as an L,D-carboxypeptidase towards the tetrapeptide L-Ala-D-iGln-L-Lys-D-Ala of the peptidoglycan stem. This family also includes vanY D-Ala-D-Ala carboxypeptidase which is vancomycin-inducible and penicillin-resistant. VanY hydrolyzes depsipeptide- and D-alanyl-D-alanine-containing peptidoglycan precursors; it is insensitive to beta-lactams. All these enzymes belong to the MEROPS family M15 subfamily B.	5.76684e-62
NZ_LS483346.1\|WP_002924534.1\|1295371_1296307_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.80208e-92
NZ_LS483346.1\|WP_002924520.1\|1303507_1303822_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	4.41679e-25
NZ_LS483346.1\|WP_002924522.1\|1300624_1302355_-\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	1.09212e-10
NZ_LS483346.1\|WP_002895374.1\|1296414_1296657_+\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	1.37164e-48
NZ_LS483346.1\|WP_002924559.1\|1287910_1289122_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_LS483346.1\|WP_002924554.1\|1291587_1291935_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.65994e-70
NZ_LS483346.1\|WP_032908156.1\|1289989_1291363_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0

>NZ_LS483346.1|WP_002924548.1|1292750_1293014_-|chorismate-mutase
MRLEEIRQEIDQVDDAIVTLLEQRMNLVDQVVALKKLTGTAVLDSKRQDVIFARVADKVEKKDYKETVVATFSDILKRSREFQNKNI
>NZ_LS483346.1|WP_002924550.1|1292376_1292751_-|fluoride-efflux-transporter-CrcB
MKEVQNSIAVALSAMVGGWLRYQIALLLVVADSFPLPTLLVNYLGTFLLVYIIKGYLSSKVKSQRLILALSTGFCGGLTTFSGLLLDSIKLADSGRYTELLIYLVLSVGGGLAIVLWAGKQVKA
>NZ_LS483346.1|WP_002924552.1|1292053_1292380_-|fluoride-efflux-transporter-CrcB
MMWAMLICCGAGSLVRYVFSKVNSRASLPIGTLLANLLGAFLIGYFYNHIEDKQLYVILATGFCGGLTTFSTMNAELAELFSERKKFVFYLALTYILGFFAILLGIFI
>NZ_LS483346.1|WP_002924554.1|1291587_1291935_-|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPAFRPGDTVRVHAKVVEGSRERIQIFEGVVIARKGAGISETYTVRKISNGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRALQGKAARIKEVRR
>NZ_LS483346.1|WP_032908156.1|1289989_1291363_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQKILNTLAQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK
>NZ_LS483346.1|WP_002924558.1|1289135_1289813_-|ribose-5-phosphate-isomerase-RpiA
MENLKKLAGIKAAEFVQSGMIVGLGTGSTAYYFVEEIGRRIKEEGLQITAVTTSSVTSKQAEGLGIPLKSIDEVDFVDVTVDGADEVDSAFNGIKGGGGALLMEKVVAVPTKHYIWVVDESKMVEKLGAFKLPVEVVQYGAEQLFRRFERAGYKPAFREKDDQRFVTDMQNFIIDLDLGVIENPVEFAQELDHVVGVVEHGLFNQMVDKVIIAGKSGLQVLEANK
>NZ_LS483346.1|WP_002924559.1|1287910_1289122_-|phosphopentomutase
MPKFNRIHLVVMDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIERPTPLKTVPQEENPSGYYTKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTQIEEFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEEVIPLEELYRICEFARSITLERPALLGRIIARPYVGEPGNFTRTANRHDYAVSPFNPTVLDKLNEAGIDTYSVGKINDIFNGAGINHDMGHNKSNNHGVDTLVKALKDDNFKEGFSFTNLVDFDALYGHRRDPHGYRDCLEEFDARIPEIIKNMREDDLLMITADHGNDPTYAGTDHTREYIPLLVFGKSLSGHGHIPVGHFADISATIAENFGVDKAMIGESFLDKLV
>NZ_LS483346.1|WP_002924561.1|1287068_1287881_-|purine-nucleoside-phosphorylase
MTSLSEKIKETAAFLKEKGMTEPEFGLILGSGLGELASEIENAVSLDYADIPNWGRSTVVGHAGKLVYGDLAGRKVLALQGRFHFYEGNPLEIVTFPVRVMKALGATGVIVTNAAGGIGYGPGTLMAITDHINMTGQNPLIGENLDEFGPRFPDMSKSYTPEYRAVAHKVADKLGIKLDEGVYIGVTGPTYETPAEIRAYKTLGADAVGMSTVPEVIVAAHSGLKVLGISCITNFAAGFQEELNHEEVVEVTERVKGDFKRLLKETLAEL
>NZ_LS483346.1|WP_032908294.1|1286020_1286734_-|purine-nucleoside-phosphorylase
MSIHISAKQGEIADKILLPGDPLRAKFIAENFLEDAVCFNEVRNMFGYTGTYKGHRVSVMGTGMGIPSISIYARELIVDYGVKKLIRVGTAGSLNADVHVRELVLAQAAATNSNIIRNDWPQYDFPQIASFDLLDKAYHIAKDLGMTTHVGNVLSSDVFYSNYFEKNIELGKWGVKAVEMEAAALYYLAAQYHVDALAIMTISDSLVNPEEDTTAEERQNTFTDMMKVGLETLIAEA
>NZ_LS483346.1|WP_002924566.1|1285262_1286024_-|hypothetical-protein
MKVDVKEAIHFAISRYDYAYAHKLAERAGSSVKSDLVLLLEALADRRELNVQSMMNLKLEITRSDLADFQLFCHENESDEQLVNYLYDLEAKLRNEQLIDFIRAVSPAIYRIFMRLIRMQIPDIESYIHNSRGASYDRWKFEKMRNSDNPDLQNFHAESTVNSSSLTELILQLHLPESVKESAQQLRELEKSVRNPLAHLIKPFDEEELHRTTGFSSQHFMALLVDLAQETGIVYQREPFYFDRANELIESLL
>NZ_LS483346.1|WP_002924540.1|1293318_1294701_-|Fe-S-cluster-assembly-protein-SufB
MKERDYAFGFHDDVKPLFSTGKGLTEEVVREISEIKNEPQWMLDYRLRSLELFHKLPMPDFGPDLSGIRFDDVIYYQKLSGDRARSWDEVPEEIKKTFDRLGIPEAEKHFLSGAVAQYESEVVYHNMKEEFAKLGIIFTDTDTAVQEYPDLVKQYFGTVISNAEHKFSALNSAVWSGGTFIYVPKNVQCQVPVQTYFRINGENAGQFERSLMIIEEGGSIQYIEGCTAPTYTSNSLHAANVEIIVKKDAFFRYTTIQNWSDNVYNLVTERGIVDEGGTLEWIDGNLGSKVNMKYPCSILNGRNARTSVLSMSFANYGQHLDAGCKVFHNAPKTSSTLISKSVAKDGGKTDYRGQVRFGKNSAGSKSHIECDTILMDGESSSDTIPFNEIHNSNVALEHEAKVSKVSEDQLYYLMSRGISEEEATAMIINGFMEPITKELPMEYAVELNQLINMSMEGSVG
>NZ_LS483346.1|WP_002924537.1|1294825_1295266_-|flavodoxin
MTLAKIVFASMTGNTEEIADIVADKLRDLDVEVEVDECTTVDAEDFLEADITIVATYTYGDGELPDEMMDFYEDLSSLDLSGKVYGVVGSGDTFYDEFCKAVDDFDAAFAATGATKGAESVKVDLSAEDDDIARLEAFAEGLVNKV
>NZ_LS483346.1|WP_002924534.1|1295371_1296307_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MTLYHDILSKIKEYDTIIIHRHMRPDPDALGSQVGLQKLLQYHFPEKTIKVTGYDEPNLMWLAQMDKVSDEEYQEALVIVCDTANTARIDDQRYTTGDFLIKIDHHPDDEVYGDISLVDTSSSSASEMIALFAFENGLDLSKEAAELLYAGIIGDTGRFLYPSTSARTFEVAAKLRQYDFDLSALSRKMDSISRQVAKLQGYVYEQLEIDENGAARVILPQKVLQAYQLTDADTAAIVGAPGRIEDVGLWAIFVEQPDGHYRVRMRSKVIPINGIAKNHHGGGHPLASGANAFSKEEIEQIYTEMKELAKK
>NZ_LS483346.1|WP_002895374.1|1296414_1296657_+|type-B-50S-ribosomal-protein-L31
MRKDIHPEYRPVVFMDTSTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK
>NZ_LS483346.1|WP_002924532.1|1296873_1298358_-|hypothetical-protein
MTDGSYRIYRDGEWKPLTNTNNNSTSNNNLENDPHYRYENGYHYYVLDNGDYYYYQNGKWVFVKDSADNSTNPTTPSQPEEPKPEVPTPTPAEPEQPTPAPNDRPEQPTTPAEPKPEVPSVDLPENPPINGAEGDLNPFAPKPEQPAEPKPETPTRPAVPETPGLVTTDKPSEDQIPPYVEKPAEGLEHLTWAPNGRAPKIIYPTGKPGDKALESDPNYYFDGSTHYYRIPSDSEANGYSPYWKWFGDKWKLQGMTDPNDPALDPKLHENTADDEYMYSDKDSSVKLYSTNLVTTAKAGQPLPFKNVEEFKNYVIEKMNPKFLDNAGWDAKVEWEIEDPEIFEKTKENPYAKDYVLIANLKSGVEDKKYSDVEFGYVKFVYRVEATNDTNYDYVSKAKEAFAKINEERKAQGLKELTWSEDIYQNQALPKVNEISRQYDSSGFVGRRDEDPSVVVKKWANSGLRELLLDPNVTEGAVATVVDGNGVYYWAYSYK
>NZ_LS483346.1|WP_002895366.1|1299505_1299796_-|cupin-domain-containing-protein
MKFFVTNPNNDFAETPVQEEGRIIHHLHLAKGKEVPEHSADALVTVVCLSGDVSFSAGEQTVRLVAGSFLTMEPNEPHSLVGEEDSHLLVIKQLKY
>NZ_LS483346.1|WP_002924525.1|1299825_1300644_-|M15-family-metallopeptidase
MKFQKVDIMTMKYSKLILLAASVLVLGACSSGKDTTGDSSDKQAASSTSTVKKQDAEKDKNSSQDTTTSSDSTDTKKKQNHEAKTLDQNVSYNGSYYSVKGKYDEILLVNKHYPLSPSYNPGENATAKAELLKLIADMQAQGYAISDQYSGFRSYDTQTELYQNYVNQDGKAAADRYSARPGYSEHQTGLAFDLIDKNGNLVQEAGASQWLLNNAYKYGFIVRYLEGKEGSTGYMPESWHLRYIGQEAKEIAQSGKSLEEYFGITGGGYEDQ
>NZ_LS483346.1|WP_002924522.1|1300624_1302355_-|hypothetical-protein
MATKEKWVDLFEKVIGRKPTASEFQAGKQSNFDPKKIKEIAGEAGEATTDTSSVENTTDEASDNQDIVQETPSEDSVTEESIQPTSQDEKQGEFESSQYEELRQNWLQAFENNIGRKPTKEEFAEAKSQGFSNLPIRSELLDSQLPQKPVKKAKKRISKKQAIMIGAPTVLVAALIGVFFYLNSITGVKVVTDHFAKAVSSKDFDEVASLLSTQSDKWTRAEARALVEHLESQEINLETELDNIVESNGKSAYIDDNNNKILGVTEKSKKFGIFQEYQMVSYPVKVKVNTNLDNATIKPGEKKTITLKKNTDTELGEYHFIKQDFTLKGKTDVGDVESKVQLDLATAKDNEIKLDLKSEKKQLKITMPSETSKATDIKIVVNGKESGSSLTPELQLVPYQELEIYAKFTISDTTFTTNKETVIVEDDTTNVKLSLPKEVVSKIREKNEEAKKVEAQKAKVSTFLNDYRSAVFSSVSNRSNNYSQYYDTSSAVYREMVEWTTGGGVKKAKINYYEPGALDIREIKEENGSYIVTTYEDYTVHYVDSTPNSVNRKNKTYYLKPSGDSFVIYNLEVSEG
>NZ_LS483346.1|WP_002915046.1|1302371_1303409_-|hypothetical-protein
MSKQDWLEYFEAVNGRSATEEEIAQALAAGEFVEAEQVSAEQASSEASPASSSFEQPQNFQQPFAQQASQQYQEVPQQQANPNQFANQGQAYQQQGFQQASPFAGQPQSSGPQAYQNNQQQGQFNSQIPQQGPQAYYSQQPPQPSEFSKTMKGFWAWLVSAWKSPTSEVESSKVNGYLSLGLTAFFFAIVANYNIFSTIGIMSFGMYNGPTFNFKVFFVSLIAAALFLFSIILGGFVVKRLVYQDRSFTFNKAFDWYGRLYAIVLPFIAASALFALLGIIHLSLFFTWIVLLLVGVGATFALIYSKTNNSMDPFYKYLLAIIINGVITIIFSFIAFSLLASIIMM
>NZ_LS483346.1|WP_002924520.1|1303507_1303822_-|rhodanese-like-domain-containing-protein
MNRRKRMQKISAKDLYDKLQLEELQLIDVREVDEFTAGHVSGAQNLPLSSLAENYGQLDKQIPYHIICQKGGRSARACEFLEAKGYQVTNVEGGVEAFPDKLTI

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Crispr_ID: NZ_LS483346_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483346_3

2017210-2017308

Orphan

Consensus_repeat	Method
TTGCGCTATCTGCTATGTTATTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483346_3

>merge|NZ_LS483346|3|2017210-2017308|CRISPRCasFinder
TTGCGCTATCTGCTATGTTATTTAGTATTCTTTCAGTTCTAGCGTAAGTAGAGAAGTTAGAAGCATCTCGAGCCCTTGCGCTATCTGCTATGTTGTTTA

>NZ_LS483346|3|3|2017210-2017308|CRISPRCasFinder
TTGCGCTATCTGCTATGTTATTTA	GTATTCTTTCAGTTCTAGCGTAAGTAGAGAAGTTAGAAGCATCTCGAGCCC
TTGCGCTATCTGCTATGTTGTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483346.1\|WP_002926675.1\|2006398_2006998_+\|HutD-family-protein	unknown	unknown	gnl\|CDD\|226281
NZ_LS483346.1\|WP_002934707.1\|2021973_2022447_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_172455809.1\|2023737_2024580_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_LS483346.1\|WP_002926701.1\|2029116_2031369_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_LS483346.1\|WP_002926690.1\|2022530_2023133_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LS483346.1\|WP_002918110.1\|2028100_2028979_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NZ_LS483346.1\|WP_002926677.1\|2007073_2008426_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_LS483346.1\|WP_002926683.1\|2015286_2016108_+\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|225217
NZ_LS483346.1\|WP_002926699.1\|2024808_2027046_-\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|225882
NZ_LS483346.1\|WP_032908274.1\|2008431_2009973_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_LS483346.1\|WP_002934566.1\|2016183_2016618_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926680.1\|2010398_2010911_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926681.1\|2011000_2012008_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|172313
NZ_LS483346.1\|WP_002926700.1\|2027154_2028099_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380391
NZ_LS483346.1\|WP_002926667.1\|2004019_2004646_+\|cyclodeaminase/cyclohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225939
NZ_LS483346.1\|WP_002901413.1\|2021081_2021993_+\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NZ_LS483346.1\|WP_002926682.1\|2012069_2015126_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226156
NZ_LS483346.1\|WP_002926694.1\|2023129_2023726_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LS483346.1\|WP_032908074.1\|2004712_2006386_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_LS483346.1\|WP_002901412.1\|2020035_2021085_+\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	unknown	unknown	gnl\|CDD\|133022

Protein	Function_ID	Function_description	E-value
NZ_LS483346.1\|WP_002926675.1\|2006398_2006998_+\|HutD-family-protein	gnl\|CDD\|226281	COG3758, COG3758, Uncharacterized protein conserved in bacteria [Function unknown].	9.71559e-29
NZ_LS483346.1\|WP_002926701.1\|2029116_2031369_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_LS483346.1\|WP_172455809.1\|2023737_2024580_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.33855e-59
NZ_LS483346.1\|WP_002918110.1\|2028100_2028979_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	1.98474e-127
NZ_LS483346.1\|WP_002926677.1\|2007073_2008426_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.98263e-50
NZ_LS483346.1\|WP_002926683.1\|2015286_2016108_+\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|225217	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones].	4.52817e-22
NZ_LS483346.1\|WP_002926699.1\|2024808_2027046_-\|alpha-galactosidase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	0
NZ_LS483346.1\|WP_002926690.1\|2022530_2023133_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.41158e-44
NZ_LS483346.1\|WP_002926681.1\|2011000_2012008_+\|formimidoylglutamase	gnl\|CDD\|172313	PRK13775, PRK13775, formimidoylglutamase; Provisional.	0
NZ_LS483346.1\|WP_002901412.1\|2020035_2021085_+\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	7.60315e-32
NZ_LS483346.1\|WP_002926700.1\|2027154_2028099_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|380391	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain. This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included is MmsR, a bacterial transcriptional regulator thought to positively regulate the expression of the mmsAB operon. The mmsAB operon contains two structural genes involved in valine metabolism: mmsA which encodes methylmalonate-semialdehyde dehydrogenase, and mmsB which encodes 3-hydroxyisobutyrate dehydrogenase. The cupin domain of members of this subfamily does not contain a metal binding site.	8.94818e-41
NZ_LS483346.1\|WP_002926667.1\|2004019_2004646_+\|cyclodeaminase/cyclohydrolase-family-protein	gnl\|CDD\|225939	COG3404, COG3404, Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism].	2.98655e-74
NZ_LS483346.1\|WP_002901413.1\|2021081_2021993_+\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	3.62496e-47
NZ_LS483346.1\|WP_002926682.1\|2012069_2015126_-\|AAA-family-ATPase	gnl\|CDD\|226156	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms].	6.79822e-52
NZ_LS483346.1\|WP_032908074.1\|2004712_2006386_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_LS483346.1\|WP_032908274.1\|2008431_2009973_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_LS483346.1\|WP_002926694.1\|2023129_2023726_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.21557e-47

>NZ_LS483346.1|WP_002934566.1|2016183_2016618_-|hypothetical-protein
MLTKLKNKIEDGISEIGNIKLEEFGIYFSNKPPYFPEGINIIENRNEKYNLIFTERGKITSEISNLTDDEVAYQILKIIIEIVSSQAIDEKNVDVIERLIKRNEFDKVSQLVGETQGKRYRYGKELLQKINPLYALWYESEHYK
>NZ_LS483346.1|WP_002926683.1|2015286_2016108_+|PrsW-family-intramembrane-metalloprotease
MKKNIVLFIFLLLSAIGLEYETQAYTTGSMSGTSYGIVGLSALLALLYIIPALLLIRQLGKKWQTPALSLWVALLGGLFISGWTSGLANTYIHEWVSTSFPNTLLSDLENAIAAPLVEEPLKLLAVAFAVYLVPVKKLKSFLMLGITAGMGFQISEDFSYILSDLPEGFSFTISGILGRITGGIASHWLYTALTTLGLALMLRYAKTQKNYFRVGLFYFLAAFVLHFFWNSPLTAIETDIPIIVPAMTALAVFIFYQAYRTAHKIDQEELEVE
>NZ_LS483346.1|WP_002926682.1|2012069_2015126_-|AAA-family-ATPase
MSKNLLRLKLLGSPSVFLNQEEVFFPFAKINALLYYLHINGAVNREEIAGVLWENKDNQTAKKNLRNTIYQANKLLGGEWVVAPNRTVLSLNPECAIESDVERFTDHPAKHLSLYQGDFLQGFYLKDSEAFDYWVSKMRTRYEQLYIQACYQQLETEKDQLDLEEAEQNLHRLISIDEFDEKNYHLLMKLYQDNDRPGKVIETYYKLVNILDKELGISPTEPIQQLYHEVLAKDRSERKTKQFLRNTDHFFGRVDEIKRLESYFSKVIETQEARALVLVGGTGIGKRTVTRQVLANQTKYFQIVMAECFKEEMKAELQPWRGLLDGLGDLVIQHQILSINQWQVILESYFPILTGGTSSRQLDADKLAQFVVDILQKISKKKALIILIEDCHWMDKASVAVLEQVMNHLTGYPVAFVLTKHLSTPSYLEHFFNHLLVRNKLGFIELQPLNFKDSVAYLQAQTGQLAISEEGLEDIYRVSQGIPFFLSEYAEQLLRGEKFHPLTPAIKAKLSLKLDYLSSQEEELVDYLACFRGPASVSLLARSLGLPMEEVVEITEEFGQKQLLMEDEQGEELVVRFSQELLRIYAYERLSLAKKRMLHHQIAQGMEDQLGDSLHHAQLLNEIAYHYKMSKQPIKSLEYELHYLEATLQFHHELFPIYSREFGFIEKTDDSNQSAVLDQFDRIRREIEGLERKHQNHKDFQLLVLRFLYLEGRYAIRTGDYQQGMDNIQQVIASAKELQQMDFLLEGYRQMIYYCIQTENIPEMRYYTELALDASVQANNHEAIAINLRLKGLYHLMIGDEEQSLHHLYQSIDCFSLTASLRSKYSIQIAAALDYLAEIEQIRGNFTTALTHQKEAIKLTENKTAEPSIFAFYIGLGMTYYQLKDYEQAERIFLKAKTALKSLSFPWKETQLEVYLALIGCEKRDYQPMLDLLRKKDSLISRYGNPRDKGLIYYLMAMIKYRLLTGSLQEADFEDLLNQDFETYFETAKSQLNPYRDRHQLKELENLRQSLSQALNTK
>NZ_LS483346.1|WP_002926681.1|2011000_2012008_+|formimidoylglutamase
MEKDKIMLEDYYQLDNSYYHKRLDDDLYAAKWGMVIEFLDLNDPHLKPFDGVNFALIGFKSDKGVYINHGRVGAVEGPQAIRTQLAKLPWHLGRNVRVFDVGDIDGPNRSLEQLQQSLARAVKRLRELNLRPIVLGGGHETAYGHYLGLKSSLASDQDLAVINMDAHFDLRPYDQTGPNSGTGFRQMFDDTLAQKQAFNYLILGIQEHNNNLFLFDFVAKSKAIQFLTGMDMYQMGYKEVCKAVDAFLAGKEQVYLTIDIDCFAAGAAPGVSAIQSLGVDPNLAVLVFQHIAASGKLIGFDIVEVSPPHDIDNHTANLAASFVFYLTQVWAQAHD
>NZ_LS483346.1|WP_002926680.1|2010398_2010911_+|hypothetical-protein
MKKAFKVDYFSIMHPIACITLPIMAHLFYLMVKAFFFDLLNILISIWTGKEIKETTDFLLPGFYLCIFILIIYLVGFLVQLIIHIRNRKENSLLPAWCMLTALIALVATVIDTLILNPELTPYAYFLSIAAYITYFFSKRPKIIESYRSNAKIRYATWTILILVIILSFL
>NZ_LS483346.1|WP_032908274.1|2008431_2009973_+|histidine-ammonia-lyase
MTHVINLDGEHLTLEDVIAVTRHEATCEIDQEAKKAVEASRKIVDDIVREKRVVYGVTTGFGSLCNVSISPEDTTQLQENLIRTHSSGYGDPLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKLLELLNKGVVPYIPEKGSLGASGDLAPLAHMVLPMLGLGRAYYQGELLSGQEALDKAGIEKIALAAKEGLALINGTTVLTGIGALATYDAIQLLKLSDVAGALSMEVHNGITSPFEEDLHTIRPQSGQLATARNIRNLLEGSGNTTVATQQRVQDPYTLRCIPQIHGASKDSIAYVKTKVEIEINSVTDNPIITKEGHVISGGNFHGEPMAQPFDFLGIAISEIGNVSERRVERLVNSQLSKLPSFLVKHPGLNSGFMITQYACASLASENKVLSHPASVDSIPSCENQEDFVSMGTTAARKAAEILKNSRRIVATEIMAACQALDLKPENHELGKGTKPAYDLFRQHVRFIEFDKDIEIYEELNKASELIENEKFLAAVEKAVDLSIQF
>NZ_LS483346.1|WP_002926677.1|2007073_2008426_+|amino-acid-permease
MDATKLTAQEQEQEKAKFSFSGATLYGINAVIGSGIFLLPQKIYKGLGPASLAVMLGTALLVILLAVCLAETAGYFNKNGGAFQYSKAAFGDFVGFNVGFLGWVVTIIAWSAMAAGFARLFVITFKSFAPYELLLSVSLIILLSLMNISGLKTSKMFTLTATVAKLIPIVAFSLCAIFFIKGGIDKGNFTPFLQLEPGVDIMKAISSTAIYIFYGFIGFETMSIVAGEMRNPEKNVPRAILGSISIVSVLYMLIIAGTIAMLGSRILQTDASVQDAFVEMIGPVGAWIVSIGALISIAGLNIGESIMVPRYGAAIANEGLLPKKIAETNSKNAPIVAIIISGILAIALLFSGKFEELAALSVVFRFFQYIPTALAVLVLRKKYPDKKVVFRVPFGPVIPILAVLVSLVMIWGENPMNYVYGLIGVLIASAVYFIYIVLICKNKILEQEGE
>NZ_LS483346.1|WP_002926675.1|2006398_2006998_+|HutD-family-protein
MTNVTLLRANDFQVSDWSGGKTKQLYLSPPTGHYGKRDFDYRLSTATVELAESQFSDLSGFHRILMSLDHTLHLHNANRQEETVLAPFTPYVFEGSDSITSRGTCTDFNLIYSDHYQGQMIAISNGQELSRDDEIQIIYALDNLTVTGTNLPALNLEAEQLLIVEKETQETELQIMFSSNQPKGTPLAIWAGLTHIPTK
>NZ_LS483346.1|WP_032908074.1|2004712_2006386_+|formate--tetrahydrofolate-ligase
MVLSDIEIANSVQMKPIKEVAEKLGIAEDALSLYGNYKAKISAGQLEALKDKPDGKLILVTAISPTPAGEGKTTTSVGLVDALAAIGKKAVIALREPSLGPVFGIKGGAAGGGHAQVVPMEDINLHFTGDFHAIGVANNLLAALIDNHIHHGNALGIDSRRITWKRAVDMNDRQLRHIVNGLQGKVNGVPREDGFDITVASEVMAILCLSENITDLKNRLEKIIIGYSFEGKPVTAKDLKAGGAMAAVLKDAIHPNLVQTLEHTPALIHGGPFANIAHGCNSVLATKLALKYADYAVTEAGFGADLGAEKFIDIKCRTSGLRPSAVVLVATIRALKMHGGVAKSDLAEENVQAVVDGLPNLEKHLENIQDVYGLPAVVAINKFPLDTEAELQAVYDACQKRGVDVVISDVWANGGAGGKELAEKVVELAEGDNQFQFVYNEEDSIETKLNKIVTKVYGGKGVRLTPAAKRELKQLEELGFSNYPICMAKTQYSFSDDAKKLGAPKDFVVTISQLKVSAGAGFIVALTGAIMTMPGLPKVPASEKIDVDKDGNISGLF
>NZ_LS483346.1|WP_002926667.1|2004019_2004646_+|cyclodeaminase/cyclohydrolase-family-protein
MKLVDLSLTEFAQVLGSDAPAPGGGSAAALSAANGISLTKMVCELTLGKKKYAEFEAEIAQVHAESARLQESLLAAIDKDTEAFNLVSAVFDMPKETEEDKAARREAMQQALKEATKSPYGMMEDILAALQTTQKAVGKSNTNAASDLGVAALNLKAGLQGAWLNVLINLSGVKDEAFVADYRSKGEELLQKGCALADEIYQEILKVV
>NZ_LS483346.1|WP_002901412.1|2020035_2021085_+|bifunctional-glycosyltransferase-family-2/GtrA-family-protein
MDMDYLVIPAYEPDYNLIKLIKKIHHKSDFHIIVIDDGSSSKCQIVFEQAEQYATVLRHQANQGKGQALKTAFTFIQALKIYGTVVTADADGQHKVWDIFRVAAKASENPNRLILGARAFTGKVPLRSRFGNSLTRALFKLQTGVGVSDTQTGLRAFTTNMIPFMLKVEGQRYEYEMNMLLEASKEYPILEVPIETVYINDNQGSHFRPIRDGLMIYKNIFKFALTSLSSFVVDYVVYALALLFLVAVPTSLRILLANGIARVTSSIFNYSTNKRLVFKNDDSILKTGTGYFSLAVVLFILDTLLIRLFYAVFGLNLLIVKIIVGILLFTASWMVQKRFIFKERTHTAS
>NZ_LS483346.1|WP_002901413.1|2021081_2021993_+|phosphodiester-glycosidase-family-protein
MKFLKKRYAYASIFGLLLTASFSYSMLKTFVIAETISTVSSTSSSSNAEAASKAAETATVTDTSYSDDNISVTLTEKTVSNTQVYIADVTVSSSEYLKTAFAQNTYGNNVTAKTSETAANNNAILAINGDYYGANTTGYVIRNGVVYRDTVREDSSNGDLAIYKDGSFKIIYEDQVSADQLVKDGVVNLLAFGPSLVENGEIAVDTNSEVGQSMSSNPRTAIGIIDENHYIIIISDGRTSESEGLSLYQMAEVMKSYGVKTAYNLDGGGSSTLYFNGQVINKPTTNGNTISERSVSDIVYIGY
>NZ_LS483346.1|WP_002934707.1|2021973_2022447_+|hypothetical-protein
MSTSVTNPSKKRFRKTALIYALLTIFFFAFSRIYESFSFGETSSHMHYLFAIPLAGGILLLLFMKVIPNLSRLSLNLWNSAVAIMTTGMLFRGIVNLSGRSTTLDMPYWYLGSAFAALALLSMIFTRSEWNKEIQAQPISSKKEDTKLSRRETYSQV
>NZ_LS483346.1|WP_002926690.1|2022530_2023133_-|histidine-phosphatase-family-protein
MKDLYLMRHGQTFFNQEGLVQGACDSPLTELGQNQARQAGAYLKELGIRFGQLYSSTQERASDTLELVSGRSDYTRLKGIKEWNFGLFEAQPERLQPKFRPGATSFEDLFVPYGGEGVDQVGERVLITLTEVMEQAGAEPVLAVSHGGAMWAFYLKIAAQALDPKVRFGNCAICHYHYEQGHFKLAEVIDPLTGDVYECE
>NZ_LS483346.1|WP_002926694.1|2023129_2023726_-|histidine-phosphatase-family-protein
MMAKTLYLMRHGQTLFNLRHKVQGWCDAPLTDFGIYQAKVAGQYFKDAGIIFDDAYSSTQERACDTLELVTDGKIPYKRVKGLKEWNFGTFEGESEDLNPPLPYGDFFVTYGGESQDQVQERMATTILQLMQETDGQSVLMVSHGGAMANFARAWRKNWRLDDLGHMTNCGILKFTFEHDQFYLEEAIGHDFSNWEGK
>NZ_LS483346.1|WP_172455809.1|2023737_2024580_-|HAD-family-hydrolase
MTRKIIFLDVDGTLIDYDNHIPESAVVAIRKAREKGHLVYVCTGRSKAEMPPEIWDIGFDGMIGGNGSYVEHKGQVILHQLIPREVAKRLVDWLQERGLEFYLESNNSLFASKGFREAARPVLQTYVLGKGAKPEEVVNMEAEEALHGLVYGGELYRDDLNKVSFILRSYQDHLDSKVAFPELKAGTWGGKGEHALFGDLGVKDITKAHAIEVLLKHLHADKADTLAFGDAKVDIPMLNYCQVGVAMGNGGEEIKAMADLVTDSVSQDGLYKAFEKLELI
>NZ_LS483346.1|WP_002926699.1|2024808_2027046_-|alpha-galactosidase
MNKASILFNEECRQFHLTNGDVSYIFRVAEDGKLLQLYYGAAVPERDYSYLVELQHRPMTTYRKEGDLRYSLEHVRQEFPEYGTTDFRHPAICLRQENGSRITDFVYVSHQIVDGKPALEGLPATYTEIQTEAKTLILTLRDALTEVEVQLFYTIFADWPVIARSSKVINQGRETCYLESLASLSLDLPDANYHWLQLSGAWARERHIKDRPLQQGIQSIESTRGISSPHHNPFVALKRPETTEFSGPVLGVSLVYSGNFLIQAEVDTYDVTRLQLGVNPFGFEWKLTAGQSFTSPEALLVYSERGLNGMSQVFHQLFRRRLARGYWRERARPVLINNWEATYFDFSENQLLNLAEKAQDVGVELFVLDDGWFGQRTNDRAGLGDWFVNPERLPQGLGSLAERIHGLGMQFGLWFEPEMVNKDSQLYRTHPDWLLAVPDRQPHHGRNQFVLDYSRPEVVDEIFERLSAVIEEAQLDYIKWDMNRPLTDVFSAAWPADQQGEIFHRYVLGVYDLYERLISRYPSLLFESCSSGGGRFDPGMLYYAPQAWTSDDSDAIERLKIQYGTSLLYPLSSMGAHVSIVPNHQTNRLTPLKTRGNVAFFGSFGYELDLNQLSPGELAEVREQIAFYKRHRELIHNGTFYRLQSPFKGDGQTAWMLVSQDQNTALLGTFKVLNQVNRSHQRLQLKGLAADTVYRLEGRSYTGAELMRVGLVTTDASSGQLLEDSEQKPSYDFDSKLWLFEAEDE
>NZ_LS483346.1|WP_002926700.1|2027154_2028099_-|AraC-family-transcriptional-regulator
MNEETTNQIHLLFSGFYFIIRVKVLSKSKEELMEHSLTLVKSMQFGQEDCFFAFCGYSKTEAHHSFGPAVRDVYVIHIVLEGRGTYSVGNQRYDLQEGQGFVVPPGQSVFYQADREEPWSYVWMGLGGRLLPRYLQDLGLQSGQWSFELTSLQEFKALVFESLAYEGSGITAELALQRQVYRFLELLSQRLKQTSLITESRRVNPYVQQVLELLSSHLPESLSVQELAQKLALHPSYLSRLFKDEVGKGIKEYSNDLRLNMAADLLTGSQLSVEEIANKTGFAVTQSFSKAFKKARGQSPLNFRKASSHLGQEL
>NZ_LS483346.1|WP_002918110.1|2028100_2028979_-|methylenetetrahydrofolate-reductase-[NAD(P)H]
MVRRHTPSLSFEVFPPNPAVGNDKIFQALREMQDLAPHFISVTASNNKFDIEETTVRLTEFIANDLKIPTIAHLPAVYLTKDMVSNILQSLDRVGVHQILALRGDIFPDVAPKDDFTFATDLIEYIKTEAPHFDIIGACYPEGHPDSPNQISDIQNLKKKVDAGCSSLVTQLFFDNERFYDFQDKCILAGIEVPIHAGIMPILNRNQALRLLKTCENIKLPRKFRAILDKYEHDPESLRAAGLAYAVDQIVDLVTQDVAGIHLYTMNNAATAYHIYKATHALFNHNPSVQSF
>NZ_LS483346.1|WP_002926701.1|2029116_2031369_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MSTTIIGFPRLGEFRELKFTTEKYFRHEISAEELLAAAKELRAKHWNIVKEKGISEIPSNDFSHYDNVLDAAFLFNVVPSSVQGLELTDLERYFALARGYQGEKGDVRALPMKKWFNTNYHYIVPKFEKETQVKLAGHKIFDEFAEAKELGLVTRPVVVGPFTLLQVSDFEDGVAPADFVDALAAAYQEVFAKLAELGAERIQLDEPSLVKDLSAEEKALFLDLYKKLLADKKGLEVLVQTYFGDVRDIYADLVELPVDAIGLDFVEGKKTLELVKGGFPADKTLYAGIVNGKNIWRNNYEKSLAVLEQIPAENLVLTSSCSLLHVPFTTANEEFEPAILNHFAFAVEKLDEIRDLDAIRNGGGAEALAANKELFATERVGENAELRARIAGLTDADYTRLPAFAEREEIQHKTLNLPPLPTTTIGSFPQTKEVRAKRLAFRKGELSAEDYDKFLAEQIDEWIKWQEEVGFDVLVHGEFERNDMVEYFGQNLSGYLFSKNGWVQSYGMRGVKPPIIWGDVTRLNPITVKWSSYAQSRTDKPVKGMLTGPVTILNWSFPREDISIKDSTLQIALAIKDEVLDLEAAGVKIIQIDEAALREKLPLRRSDWYEDYLDWAIPAFRLVHSTVAPDTQIHTHMCYSEFTDIIPAIDNMDADVISFEASRSNLEILDELKAKNFQTEVGPGVYDIHSPRVPNEGEIDHTIEAILAKVPSSKVWINPDCGLKTRGIPETKASLVRLVEAAKAARKHLK

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Crispr_ID: NZ_LS483346_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483346_4

2152663-2152763

Orphan

Consensus_repeat	Method
TTTTCTGCTGTGATCCGAGCTACTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483346_4

>merge|NZ_LS483346|4|2152663-2152763|CRISPRCasFinder
TTTTCTGCTGTGATCCGAGCTACTTCTGCTTGATGAGCAGCCAAATCTTTAGCGTATTGTTCCGCTGTCGCTTTGTTTTCTGCTGTAATCCGAGCTACTTC

>NZ_LS483346|4|4|2152663-2152763|CRISPRCasFinder
TTTTCTGCTGTGATCCGAGCTACTTC	TGCTTGATGAGCAGCCAAATCTTTAGCGTATTGTTCCGCTGTCGCTTTG
TTTTCTGCTGTAATCCGAGCTACTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483346.1\|WP_002901586.1\|2160350_2161019_-\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|183656
NZ_LS483346.1\|WP_002896640.1\|2145827_2147174_-\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|223252
NZ_LS483346.1\|WP_002896659.1\|2165294_2165618_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|224364
NZ_LS483346.1\|WP_002926896.1\|2147651_2148176_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_LS483346.1\|WP_002926875.1\|2142136_2143861_-\|DUF2974-domain-containing-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002898481.1\|2155045_2155735_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_LS483346.1\|WP_002896658.1\|2164962_2165274_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|224357
NZ_LS483346.1\|WP_002926909.1\|2153604_2154801_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_LS483346.1\|WP_002926882.1\|2145356_2145776_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_LS483346.1\|WP_002898501.1\|2159210_2160305_-\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|181843
NZ_LS483346.1\|WP_032908058.1\|2155913_2158415_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_LS483346.1\|WP_002926898.1\|2148352_2149018_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_LS483346.1\|WP_002926876.1\|2143835_2144249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926874.1\|2141843_2142155_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002926914.1\|2161033_2163475_-\|glycyl-radical-protein	unknown	unknown	gnl\|CDD\|153086
NZ_LS483346.1\|WP_002926912.1\|2158579_2159143_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_LS483346.1\|WP_002898467.1\|2147205_2147571_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_LS483346.1\|WP_002926879.1\|2144868_2145288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483346.1\|WP_002898504.1\|2163643_2164945_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_LS483346.1\|WP_002926877.1\|2144353_2144767_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LS483346.1\|WP_002901586.1\|2160350_2161019_-\|fructose-6-phosphate-aldolase	gnl\|CDD\|183656	PRK12656, PRK12656, fructose-6-phosphate aldolase; Reviewed.	9.10477e-154
NZ_LS483346.1\|WP_002896659.1\|2165294_2165618_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|224364	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism].	4.05636e-37
NZ_LS483346.1\|WP_002898504.1\|2163643_2164945_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	3.3681e-152
NZ_LS483346.1\|WP_002898481.1\|2155045_2155735_-\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	1.12417e-88
NZ_LS483346.1\|WP_002896658.1\|2164962_2165274_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|224357	COG1440, CelA, Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism].	4.85293e-42
NZ_LS483346.1\|WP_002926909.1\|2153604_2154801_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_LS483346.1\|WP_002926882.1\|2145356_2145776_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	9.60914e-12
NZ_LS483346.1\|WP_002898501.1\|2159210_2160305_-\|glycerol-dehydrogenase	gnl\|CDD\|181843	PRK09423, gldA, glycerol dehydrogenase; Provisional.	0
NZ_LS483346.1\|WP_032908058.1\|2155913_2158415_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_LS483346.1\|WP_002926898.1\|2148352_2149018_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.4437e-18
NZ_LS483346.1\|WP_002926912.1\|2158579_2159143_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	7.2197e-27
NZ_LS483346.1\|WP_002926914.1\|2161033_2163475_-\|glycyl-radical-protein	gnl\|CDD\|153086	cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related enzymes. This family includes pyruvate formate lyase 2 (PFL2), B12-independent glycerol dehydratase (DhaB) and the alpha subunit of benzylsuccinate synthase (BssA), all of which have a highly conserved ten-stranded alpha/beta barrel domain, which is similar to those of PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide reductase). Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. DhaB catalyzes the first step in the conversion of glycerol to 1,3-propanediol while BssA catalyzes the first step in the anaerobic mineralization of both toluene and m-xylene.	0
NZ_LS483346.1\|WP_002898467.1\|2147205_2147571_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	9.18853e-27
NZ_LS483346.1\|WP_002926896.1\|2147651_2148176_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	9.03149e-38
NZ_LS483346.1\|WP_002896640.1\|2145827_2147174_-\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	0

>NZ_LS483346.1|WP_002926898.1|2148352_2149018_-|CHAP-domain-containing-protein
MKKAFAKATLGLTSTAFLATIGAQAVNADSYVVQQGDSFFAIASANGMNPYELAANNGKTIFDTINPGDVLQVNGTALAQTYNPYSAPAYEATSDAALVSDTEDVVLNTPTDYGNSYPIGQCTWGVKEMAPWASNWWGNANTWAINAGAQGYATGNVPVPGAIAVWDGGEYGHVAYVTDVQSDSSIQVLEANYNRQKQINNYRGYFNPNEFMGGVTYIYPN
>NZ_LS483346.1|WP_002926896.1|2147651_2148176_-|aromatic-acid-exporter-family-protein
MSYFNKYKFDKSKFRLGMRTFKTGLAVFIILLLFGLFGWKGLQIGALTAVFSLREDFDKSVHFGTSRILGNSIGGFYALLFFIVNSVFKEQYWVTLLLVPVCTMLTIMTNVAMNNKAGVIGGVSAMLIITLSIRPEDTILYVFARIFETFMGVFVAILVNSDIDRLRAIFEKEK
>NZ_LS483346.1|WP_002898467.1|2147205_2147571_-|MerR-family-transcriptional-regulator
MKEKEFRRNMAVFPIGSVMKLTDLSARQIRYYEDQNLITPARNEGNRRMYSLNDMDRLLEIKDYISEGYNIAAIKRKYAEREAKSHKTISEKDVRRALHHDILQQGRFASSLPTFGQMRRP
>NZ_LS483346.1|WP_002896640.1|2145827_2147174_-|type-I-glutamate--ammonia-ligase
MSITAADIRREVKEKNVTFIRLMFSDILGTMKNVEIPATDEQLDKVLSNKAMFDGSSIEGFVRINESDMYLYPDLDTWTVFPWGDENGSVAGLICDVYTTDHVPFLGDPRSNLKRALKHMEELGFKSFNLGPEPEFFLFKLDENGDPTLEVNDKGGYFDLAPTDLADNTRREIVNVLTKMGFEVEASHHEVAVGQHEIDFKYDEVLRACDKIQIFKLVVKTIARKHGLYATFMAKPKFGIAGSGMHCNMSLFDQDGNNAFFDPEDPKGMQLSETAYHFLGGLINHAYNYTAIMNPTVNSYKRLVPGYEAPVYIAWAGRNRSPLVRVPASRGMGTRLELRSVDPMANPYIAMAVLLEVGLHGVENKIEAPAPIEENIYIMTPEERKEAGITDLPSTLHNALKALTEDEVVKAALGEHIYTSFLEAKRIEWASYATFVSQWEVDNYLDLY
>NZ_LS483346.1|WP_002926882.1|2145356_2145776_-|GNAT-family-N-acetyltransferase
MEKFHDFIKRVFDEQYEAYFGPDMLEKLEPQDYYLRREEDGQLIALLHAQQVLGNIHIKALVVDKEHQKRGLGASLLAELEEKAAEVGVTSITLSTKSYQARDFYIKQGYEIYASLTDVPQKCITKYHFIKRLNEAILK
>NZ_LS483346.1|WP_002926879.1|2144868_2145288_-|hypothetical-protein
MKKQKRIALALVTIGIIGGAFFLGNQESLNKIITKKPDLQKIKEKQLDELKKHEEEIKYFVKSQNPKIESVQVDWNQTNWEEVGNGTPWGGGEVIRIFGGFNHIEDSSWSVLVDVENGKADIDSIMQGSPIRAGGEIFE
>NZ_LS483346.1|WP_002926877.1|2144353_2144767_-|hypothetical-protein
MKKHKIIWLLFIVLVIGGGNLYMFSQGNLFLDSKAGLRITKEKQLDYLKKHQDEIKNFVKSQNPKIESVQVDWNQTNWEKVGNGTPWGAGEIVNVYGRFNHIEDSSWNVTFLVKDNEVVPNSMSLANDLYVGGRIFE
>NZ_LS483346.1|WP_002926876.1|2143835_2144249_-|hypothetical-protein
MKKHKMIWLVLIALFIGGGSLYMFSQGNLFSDGKANLRTSKDKQLDYLKKHQDEIKNFVKSQNPKIDSVQIDWAETQWNQVGNGTPQGAGDIIDVYGTFNNIENSGWHVMIDVPEGEFNIRAMTLVNYLSVGGEEFE
>NZ_LS483346.1|WP_002926875.1|2142136_2143861_-|DUF2974-domain-containing-protein
MLEAKNLSNSNLKSFDNFYADLAQSSYHGRPVVFPYDSLTKDQRKKLDSGDSILFDFSKNKKYKQTEKDPVTGAEVEVEREVIGGGKDLVHEGKVYLHPDPDLHTVEGTYITNSYQKGLMTDEKAGFNSYFLTDSEELGSKTTKAYMAIRGSDGMRLETWNDWVDNDANFAFNHSHIPQAKLATVAMRERIKEIKEKAPDNVKMDVAAHSLGTMVSVQGLAGLSVEELKTIGQVVLLDGPDTRKSLKNMNVSKEVYDELNARITYYLNPFDIVSMLNRENTIYNLENPNQEPLEKPLGTARVVVPLHYTAFFKMDESSHDFGVMQMDTSGNYLVASKDFHPELLKAGEKLARLEQKFLNSLRSKGYSDNVALTMVTKLTQMIVSPTMTALESSELAIESRQFVEEYGRIISEARKESIEWDKKAIADYKNQLSNSKLTDEKRIELQTKLLQTAAQLASFGVEDCDMRVGKLLDDAKEKLQTTVSQATETVYSMATHLSRSEVDQMLSDFTIDNFWDEGVYTDTKAESTNFRNSIDQLSVTLVRGASLLNKVDSQSAESFNALLEETKNVWRTPW
>NZ_LS483346.1|WP_002926874.1|2141843_2142155_-|hypothetical-protein
MEDAMVMIVLNESFERRLNEAHIEKMKSQEREAIRAFLLAKRMEIHAMGAMLNISLKLQATLMKEHATTYSTNIEGGFSGTAGDAAKDYLASLKTPNLQSPIK
>NZ_LS483346.1|WP_002926909.1|2153604_2154801_-|phosphoglycerate-kinase
MAKLTVKDVDLKGKKVLVRVDFNVPLKDGVITNDNRITAALPTIKYIIEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVVFPGVTRGAELEAAINALEDGQVLLVENTRFEDVDGKKESKNDPELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLEKADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKALLEKANGKLVLPVDSKEANAFADYTEVKDTEGEAVDPGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQAGTIGVMDAIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPGLAALTEK
>NZ_LS483346.1|WP_002898481.1|2155045_2155735_-|VIT-family-protein
MEEHKIDTNFSGRLNILRAGVLGANDGIISIAGVVIGVASATDDVWIIFLSGLAAVFAGAFSMAGGEYVSVSTQKDTEEAAVARERELLEKNPDIARQSLYAAYVQNGECETSAQLMTNRAFLQDPLEALVAEKYGIEIEEFTNPWHAAISSFLAFAVGALFPMITIILLPASVRIWATVLIVALALLGTGYTSARLGKAPLKNAMLRNLVIGLLTMAVTYAVGQVFAI
>NZ_LS483346.1|WP_032908058.1|2155913_2158415_-|leucine--tRNA-ligase
MAYYNHKEIEPKWQKYWAEHHTFKTGTDQDKPNFYALDMFPYPSGAGLHVGHPEGYTATDILSRYKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPADFTAENIANFKRQINALGFSYDWDREINTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVEELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLTDLEELDWPESIKDMQRNWIGKSTGANVTFKIKDTDKDFTVFTTRPDTLFGATYAVLAPEHALVDAITSAEQAQAVADYKHAASLKSDLARTDLAKDKTGVWTGAYAINPVNGKEIPIWIADYVLASYGTGAIMAVPAHDERDWEFAKQFNLEIIPVLEGGNVADAAYTEDGPHINSGFLDGLDKAAAIEKMVAWLEAEGVGNEKVTYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPESELPLVLPVTKDIRPSGTGESPLANLTDWLEVTRADGVKGRRETNTMPQWAGSSWYYLRYIDPHNNEKLADEELLKAWLPVDIYIGGAEHAVLHLLYARFWHKFLYDIGVVPTKEPFQKLFNQGMILGTSYRDSRGALVATDKVEKRDGSFFNIETGEELEQAPAKMSKSLKNVVNPDDVVEQYGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLLNSKELVTENSGALDKVYHETVKSVTEQIEELKFNTAIAQLMIFVNAANKEEKLYVEYAKGFIQLLAPFAPHLAEELWQAVTQTDDSISYVAWPTYDESKLVEAEVEIVVQIKGKVRAKLVVAKDLSREELQEIALADEKIKSEIAGKEVVKVISVPNKLVNIVVK
>NZ_LS483346.1|WP_002926912.1|2158579_2159143_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MNLQTIFTYIFFVIFISTEMWIKNKTKSNNVNDSADKGSRYIIIGSVICCLFLINGQFLDFVPHLPSITIYLGILISLAGFALRVYAVNYLGKNFTLAVQTTDSQQLVDHGPYAIVRNPAYTGSILSILGLSITSLNPLTIIISLILLVVGYSIRLRVEEKALGNHFGKNYEAYCQKVRYRVFPYIW
>NZ_LS483346.1|WP_002898501.1|2159210_2160305_-|glycerol-dehydrogenase
MRIFASPSRYIQGENALFENAKQILQLGSHPVLLCDDMVYQIVGEKFNDYLTRYGFHVLHVAFNGEASDAEIDRVVALAEKDGADLVIGLGGGKTIDSAKAIADILGRPVVIAPTIASTDAPTSALSVIYTEDGAFEKYIFYSKNPELVLVDTKVIAGAPKRLLASGIADGLATWVEARAVQQKNGTTMLGQRQSLAGVAIAKKCEETLFADGLQAIAACEAKVVTPALENIIEANTLLSGVGFESGGLAAAHAIHNGFTALTGDIHHLTHGEKVAYGTLTQLLLENRPKEELEKYIRFYQKIGMPTTLKEMHLENASYEDLLKVGQQATIEGETIHQMPFEISASDIAGAILAVDQYVRDLDK
>NZ_LS483346.1|WP_002901586.1|2160350_2161019_-|fructose-6-phosphate-aldolase
MEFMLDTLNLEEIKKWSEVLPLAGVTSNPTIAKKEGKIDFFERIRAVREIIGEGLTIHVQVVAKDYEGILKDAAEIRKKCGDAVYIKVPVTPAGLAAIKTLKAEGYKITATAIYTTFQGLLAIEAGADYLAPYYNRMENLNIDSDAVISQLAQAIERDHSASKILAASFKNVGQINRAFADGAQAITAGPDVFAAAFAMPSIAKAVDDFAADWSAIHNQEYI
>NZ_LS483346.1|WP_002926914.1|2161033_2163475_-|glycyl-radical-protein
MIQVKEVEKTTIKTDYFGSLTERMNKYREDVLNKKPYIDAERAVLATKAYDKHKEKPNVLKRAYMLKEILENMTLYIEDETMIVGNQASSNKDAPIFPEYTLEFVLNELDLFEKRDGDVFYITEETKEQLRSIAPFWENNNLRARAGALLPEEVQVYMETGFFGMEGKMNSGDAHLAVNYQKLLAYGLKGFEEKARAAKEALDLTDPASIDKYHFYDSIFIVVDAVKAYAERFVALANQLAEKAEPKRRQELLEIARICSKVPYEPASTFAEAVQSVWFIQCILQIESNGHSLSYGRFDQYMYPYVKADLEAGRETEASIVERLTNLWIKTITINKVRSQAHTFSSAGSPLYQNVTIGGQTRDKRDAVNPLSYLVLKSVAQTHLPQPNLTVRYHAGLDARFMNECIEVMKLGFGMPAFNNDEIIIPSFIAKGVLEEDAYDYSAIGCVETAVPGKWGYRCTGMSYMNFPKVLLITMNDGIDPASGKRFAPSFGHFKDMKSFAELQTAWDKTLRHLTRMSVIVENSIDLSLEREVPDILCSALTDDCIGRGKHLKEGGAVYDYISGLQVGIANLSDSLAAIKKLVFEEGRLTPAELWHALKTDYAGERGKEIQEMLIHDAPKYGNDDDYADKLVTDAYDIYVDEIAKYPNTRYGRGPIGGIRYSGTSSISANVGQGRGTLATPDGRNAGTPLAEGCSPSHNMDKNGPTSVLKSVSKLPTDEIVGGVLLNQKVNPQTLSKEEDKVKLIALLRTFFNRLHGYHIQYNVVSRETLIDAQKHPEKHRDLIVRVAGYSAFFNVLSKATQDDIIGRTEHTL
>NZ_LS483346.1|WP_002898504.1|2163643_2164945_-|PTS-sugar-transporter-subunit-IIC
MSKVDTQKIIAPIMKFVNMRGIIALKDGMLAILPLTVVGSLFLIVGQLPFEGLNQAIAGVFGADWTEPFMQVYSGTFAIMGLISCFSIGYSYAKNSGVEPLPAGVLSLSSFFILLKSSYIPEKGEAIADAIAKVWFGGQGIIGAILIGLAVGSIYTIFIQKHIVIKMPEQVPQAIAKQFEAMIPAFVIFLLSMLVYIIAKIATGGGTFIEMIYDVIQVPLQGLTGSLYGAIGIAFFISFLWWFGVHGQSVVNGVVTALLLSNLDANKALLAADKLSVSQGAHIVTQQFLDSFLILSGSGITFGVVVAMLFAAKSKQYKALGKVAAFPAIFNVNEPVVFGFPIVMNPVMFLPFVLVPVLAALIVYMAIAVGFMQPFAGVTLPWSTPAIISGFMVAGWQGAVIQIVILAMSAFVYFPFVKFQDKIAYNNELKNEE
>NZ_LS483346.1|WP_002896658.1|2164962_2165274_-|PTS-sugar-transporter-subunit-IIB
MVKIGLFCAAGFSTGMLVNNMKIAAAEKGLEAEIEAYSQAKLADYAADLDVALLGPQVAYTLDKSTAICDSCHTPIAVIPMADYGMLDGEKVLNLALSLLDKH
>NZ_LS483346.1|WP_002896659.1|2165294_2165618_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MEMIVADQIIMGLILDAGDAKQHIYQALSLAKDGKFSECDEQIELADKALLEAHNLQTKFLAQEAGGTKTEITALFVHSQDHLMTSITEINLIKEIIDLRRELQGEK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31404 : 39437

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002926485.1\|31404_31653_+	acyl carrier protein	A0A1P8VWH3	Flavobacterium_phage	2.7e-05	38.3
WP_002905710.1\|31807_32515_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D8KNF0	Synechococcus_phage	6.0e-42	38.8
WP_002926484.1\|32534_36269_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.5e-38	25.6
WP_002907653.1\|36367_37807_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.6e-57	34.8
WP_002916804.1\|37866_38889_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	6.9e-63	42.9
WP_002916803.1\|38885_39437_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	36.9

DBSCAN-SWA_2

798630 : 804872

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002925345.1\|798630_799521_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.0e-06	29.8
WP_002895961.1\|799517_800495_+	YvcK family protein	A1IMD5	Streptococcus_phage	1.1e-153	82.5
WP_002925343.1\|800491_801403_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.5e-119	73.6
WP_002925341.1\|801436_802405_-	NAD(P)/FAD-dependent oxidoreductase	Q9JRK7	Streptococcus_phage	4.8e-50	75.8
WP_002925339.1\|802516_803833_-	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.9e-95	43.0
WP_002925337.1\|804022_804379_+	DUF1304 family protein	NA	NA	NA	NA
WP_002895954.1\|804494_804872_+	BlaI/MecI/CopY family transcriptional regulator	X5JAW5	Clostridium_phage	5.0e-11	34.2

DBSCAN-SWA_3

1768220 : 1779701

Streptococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032908102.1\|1768220_1769048_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	3.0e-125	79.9
WP_002923646.1\|1769059_1769446_+	VOC family protein	NA	NA	NA	NA
WP_002923643.1\|1769473_1770103_-	endonuclease III	NA	NA	NA	NA
WP_002923636.1\|1770197_1770551_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	6.7e-34	59.0
WP_002923633.1\|1770686_1771862_-	3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.6e-175	79.5
WP_002923632.1\|1771874_1772966_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	7.3e-164	78.2
WP_002894691.1\|1773225_1774092_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	71.5
WP_002894690.1\|1774094_1774412_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.7e-28	59.0
WP_002894688.1\|1774436_1775327_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	3.0e-83	54.8
WP_002923625.1\|1775323_1775962_-	dTMP kinase	M1PSC7	Streptococcus_phage	8.3e-83	70.7
WP_002923623.1\|1776274_1777162_+	YitT family protein	M1Q1P6	Streptococcus_phage	7.0e-88	55.6
WP_002905931.1\|1777194_1777851_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	2.1e-81	73.1
WP_002894681.1\|1778226_1778937_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-18	28.1
WP_002923617.1\|1778936_1779701_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-15	25.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483346

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection