CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483372	Pseudomonas fluorescens strain NCTC10038 chromosome 1	2 crisprs	RT,DEDDh,DinG,csa3,cas3,WYL	2	2	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483372_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483372_1

2104132-2104281

Orphan

Consensus_repeat	Method
GAAGCCGGATCCGAAGCC	CRT

3 spacers

The CRISPR arrays of NZ_LS483372_1

>merge|NZ_LS483372|1|2104132-2104281|CRT
GAAGCCGGATCCGAAGCCAGATCCGAAGCCGGATCCGAAGCCAGACCCGAAGCCGGATCCGAAGCCGGATCCGAAGCCAGACCCGAAGCCGGATCCGAAGCCGGATCCAAAGCCGGATCCGAAGCCAGACCCGAAGCCGGATCCGAAGCC

>NZ_LS483372|1|1|2104132-2104281|CRT
GAAGCCGGATCCGAAGCC	AGATCCGAAGCCGGATCCGAAGCCAGACCC
GAAGCCGGATCCGAAGCC	GGATCCGAAGCCAGACCC
GAAGCCGGATCCGAAGCC	GGATCCAAAGCCGGATCCGAAGCCAGACCC
GAAGCCGGATCCGAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483372.1\|WP_053255204.1\|2100317_2100881_+\|phosphonate-metabolism-protein/1,5-bisphosphokinase-(PRPP-forming)-PhnN	unknown	unknown	gnl\|CDD\|274078
NZ_LS483372.1\|WP_053255213.1\|2111530_2112403_-\|urea-transporter	unknown	unknown	gnl\|CDD\|377010
NZ_LS483372.1\|WP_053255197.1\|2094689_2095127_+\|phosphonate-C-P-lyase-system-protein-PhnG	unknown	unknown	gnl\|CDD\|377702
NZ_LS483372.1\|WP_053255215.1\|2113939_2115220_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|225254
NZ_LS483372.1\|WP_073636930.1\|2093973_2094678_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	unknown	unknown	gnl\|CDD\|225099
NZ_LS483372.1\|WP_053255216.1\|2115409_2116300_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|185019
NZ_LS483372.1\|WP_053255202.1\|2098460_2099180_+\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
NZ_LS483372.1\|WP_053255203.1\|2099169_2100318_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
NZ_LS483372.1\|WP_053255214.1\|2112534_2113950_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487
NZ_LS483372.1\|WP_069552277.1\|2107440_2108637_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_LS483372.1\|WP_096236997.1\|2097663_2098461_+\|phosphonate-C-P-lyase-system-protein-PhnK	unknown	unknown	gnl\|CDD\|183280
NZ_LS483372.1\|WP_053255198.1\|2095126_2095717_+\|phosphonate-C-P-lyase-system-protein-PhnH	unknown	unknown	gnl\|CDD\|226152
NZ_LS483372.1\|WP_053255205.1\|2100871_2101621_+\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NZ_LS483372.1\|WP_053255200.1\|2096785_2097652_+\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	unknown	unknown	gnl\|CDD\|377586
NZ_LS483372.1\|WP_053255199.1\|2095716_2096793_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	unknown	unknown	gnl\|CDD\|377563
NZ_LS483372.1\|WP_157750151.1\|2105199_2105973_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|369942
NZ_LS483372.1\|WP_003210603.1\|2107030_2107435_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_LS483372.1\|WP_053255210.1\|2108815_2109430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483372.1\|WP_053255211.1\|2109564_2110569_-\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NZ_LS483372.1\|WP_053255212.1\|2110674_2111499_-\|ion-transporter	unknown	unknown	gnl\|CDD\|366146

Protein	Function_ID	Function_description	E-value
NZ_LS483372.1\|WP_053255204.1\|2100317_2100881_+\|phosphonate-metabolism-protein/1,5-bisphosphokinase-(PRPP-forming)-PhnN	gnl\|CDD\|274078	TIGR02322, Ribose_15-bisphosphate_phosphokinase_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see ), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. [Central intermediary metabolism, Phosphorus compounds].	2.31947e-76
NZ_LS483372.1\|WP_053255213.1\|2111530_2112403_-\|urea-transporter	gnl\|CDD\|377010	pfam03253, UT, Urea transporter. Members of this family transport urea across membranes. The family includes a bacterial homolog.	2.63281e-52
NZ_LS483372.1\|WP_053255197.1\|2094689_2095127_+\|phosphonate-C-P-lyase-system-protein-PhnG	gnl\|CDD\|377702	pfam06754, PhnG, Phosphonate metabolism protein PhnG. This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase.	1.70703e-58
NZ_LS483372.1\|WP_053255215.1\|2113939_2115220_-\|glycerate-kinase	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_LS483372.1\|WP_073636930.1\|2093973_2094678_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	8.73529e-55
NZ_LS483372.1\|WP_053255216.1\|2115409_2116300_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|185019	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase.	3.19624e-128
NZ_LS483372.1\|WP_053255202.1\|2098460_2099180_+\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	7.22914e-141
NZ_LS483372.1\|WP_053255203.1\|2099169_2100318_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
NZ_LS483372.1\|WP_053255214.1\|2112534_2113950_-\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0
NZ_LS483372.1\|WP_069552277.1\|2107440_2108637_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.58845e-61
NZ_LS483372.1\|WP_096236997.1\|2097663_2098461_+\|phosphonate-C-P-lyase-system-protein-PhnK	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	0
NZ_LS483372.1\|WP_053255198.1\|2095126_2095717_+\|phosphonate-C-P-lyase-system-protein-PhnH	gnl\|CDD\|226152	COG3625, PhnH, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	8.53921e-75
NZ_LS483372.1\|WP_053255205.1\|2100871_2101621_+\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	4.70073e-158
NZ_LS483372.1\|WP_053255200.1\|2096785_2097652_+\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	gnl\|CDD\|377586	pfam06007, PhnJ, Phosphonate metabolism protein PhnJ. This family consists of several bacterial phosphonate metabolism (PhnJ) sequences. The exact role that PhnJ plays in phosphonate utilisation is unknown.	0
NZ_LS483372.1\|WP_053255199.1\|2095716_2096793_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	gnl\|CDD\|377563	pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI). This family consists of several Proteobacterial phosphonate metabolism protein (PhnI) sequences. Bacteria that use phosphonates as a phosphorus source must be able to break the stable carbon-phosphorus bond. In Escherichia coli phosphonates are broken down by a C-P lyase that has a broad substrate specificity. The genes for phosphonate uptake and degradation in E. coli are organized in an operon of 14 genes, named phnC to phnP. Three gene products (PhnC, PhnD and PhnE) comprise a binding protein-dependent phosphonate transporter, which also transports phosphate, phosphite, and certain phosphate esters such as phosphoserine; two gene products (PhnF and PhnO) may have a role in gene regulation; and nine gene products (PhnG, PhnH, PhnI, PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably comprise a membrane-associated C-P lyase enzyme complex.	0
NZ_LS483372.1\|WP_157750151.1\|2105199_2105973_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	1.02503e-65
NZ_LS483372.1\|WP_003210603.1\|2107030_2107435_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	1.88072e-45
NZ_LS483372.1\|WP_053255211.1\|2109564_2110569_-\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
NZ_LS483372.1\|WP_053255212.1\|2110674_2111499_-\|ion-transporter	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	1.95809e-26

>NZ_LS483372.1|WP_053255205.1|2100871_2101621_+|phosphonate-metabolism-protein-PhnP
MRLTLLGTGDARQVPVYGCECAACGLARSDESLRRRPCSALIECGDQRWLIDSGLPDLTERFPPRSFNGIFQTHYHADHAQGLLHLRWGQGLVIPVHGPVDAEGLSDLYKHPGVLDFSQPFAEFETRRFGELSVTALPLLHSKPTLGYLLEGEGRRIAYLTDTVGLPPATRDWLQREPLDVLVLDCSMPPQPQAPRNHNDLTLALQCIEEVGAEWGVLTHVGHTLDAWLLQHRRELPRNVTVGWDGRVL
>NZ_LS483372.1|WP_053255204.1|2100317_2100881_+|phosphonate-metabolism-protein/1,5-bisphosphokinase-(PRPP-forming)-PhnN
MAGRLIYLIGPSGSGKDSLLDAARPRLAERGCRIVRRVITRSAEAVGEAAQGVSPAQFAAMEAEGAFALSWHANGLSYGIPREIDEWLAAGHDVLVNGSRSHLAQTRLRYPNLLVVLLTVDQAVLRQRLLARGRESLADIDLRLARNARFADSLSTAADVFLLDNSGQLEHTVERLLGCLDGQPACA
>NZ_LS483372.1|WP_053255203.1|2099169_2100318_+|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MPAEQILSNAQVVTADRVFLGSVVLRDGLIVDIAEGRSQLPQAQDLDGDCLLPGLVELHTDNLEKHMTPRPGVDWPSTSAVLSHDAQIIAAGITTVFDAVSIGDVNPKGNRMQKLPAMLNAIAAAESAGLTRAEHHLHLRCELCHPDTLSVFRDLVENPLVRLVSVMDHSPGQRQFVLESKYREYYMGKYHLNDETMDAFIKLQMANSKEYSDRYRAAIVEHCLTRGLSVASHDDATLAHVEESAGYGMTIAEFPTTLEAARGCQELNMKVLMGAPNVVRGGSHSGNVAAAGLAAEGLLDILSSDYYPASLLQAAFVLADQQDGGDLSRAVKMISLAPAHAAGLSDRGEIAVGLRADLVQAKKSRDGLPVVQQVWRQAKRVF
>NZ_LS483372.1|WP_053255202.1|2098460_2099180_+|phosphonate-C-P-lyase-system-protein-PhnL
MNALIEVRDLSKTFTLHQQHGVVLNVLRGVEFSVKGGECLVLHGQSGAGKSTLLRTLYGNYLPAGGSIRVQHLGEWLELVGAEPREVLQVRQQTLGYVSQFLRVIPRVACLDVVMEPALARGWSRDLARSRAELLLSRLNIPQRLWQLAPGTFSGGEQQRVNIARGFMVAWPVMLLDEPTASLDDSNRQVVLELMNEAKAAGAALIGIFHDRAAREAVADRHFDMTPAPVAQEEYAHAR
>NZ_LS483372.1|WP_096236997.1|2097663_2098461_+|phosphonate-C-P-lyase-system-protein-PhnK
MKQPPLSVPVEPLLQVRDLSLLYGPEKGCQGVSFDLYPGEVLGIVGESGSGKSTLLSLLSGRLPPQAGNIGYRGKDGEWLDLYSASEAERRTLLRTEWGFVEQNPRDGLRMGVSAGANIGERLMAQGVRNYQQLRGAGLDWLSQVEIDPQRIDDLPRTFSGGMQQRLQIARNLVSSPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELDLAVVIVTHDLAVARLLADRLMVMRRSRVVETGLTDQILDDPQHPYSQLLVSSVLQP
>NZ_LS483372.1|WP_053255200.1|2096785_2097652_+|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ
MNDLTQTPARDPAYNFAYLDEQTKRMIRRALLKAVAIPGYQVPFGGREMPLPYGWGTGGMQLTAAILGADDVLKVIDQGADDTTNAVSIRRFFARTAGVATTESTPDATVIQTRHRIPETPLQADQIMVYQVPIPEPLRFIEPSETETRTMHALNDYGVMHVKLYEDIATFGHIATSYAYPVMVDERYVMDPSPIPKFDNPKLDMSPALMLFGAGREKRLYAVPPYTQVNSLDFEDHPFEVQKWEHNCAICGSHDSFLDELILDDAGTQSFVCSDTWYCAQRVKESNQ
>NZ_LS483372.1|WP_053255199.1|2095716_2096793_+|carbon-phosphorus-lyase-complex-subunit-PhnI
MYVAVKGGEQAIDNAHRLLAKKRRGDTSIPELNVEQIREQLPLAVARVMSEGSLYDTELAALAIKQAAGDLVEAIFLLRAYRTTLPRFSPSLPIDTAQMSLSRRLSATFKDVPGGQLLGPTFDYTHRLLDFALLAEGEYPGPQTAPDATLEACPRVLGLLAKEGLIKNESDDTGSVADITRDPLEYPANRAQRLQALARGDEGFLLALGYSTQRGYGRNHPFAGEIRIGDVEVWIDPQELGFPVCLGSIEVTECEMVNQFVGSATELAQFTRGYGLAFGHAERKAMGMALVDRSLRASEFNEEIVSPAQQEEFVLSHCDNVEAAGFVSHLKLPHYVDFQSELELIRKLRQPAEGTRHE
>NZ_LS483372.1|WP_053255198.1|2095126_2095717_+|phosphonate-C-P-lyase-system-protein-PhnH
MNAQLLQPAFVDPVLDAQRGFRGALKALAEPGLIQSLPAAPSLEGLAPGTYALCLALLDTDTPLWLAPSFDTPLIRANLAFHCGCPLTTRREEAAFALLGEQDLLDLGGFDHGNDRYPDQSCTLLVQLTDLEAGRALNWQGPGIKTQRQVNLPVPQAFWLERQRRETFPRGLDVLFAAGHHLIGLPRSTRIAQERA
>NZ_LS483372.1|WP_053255197.1|2094689_2095127_+|phosphonate-C-P-lyase-system-protein-PhnG
MNLSPRQHWIGVLARAFRSELLPHEDALRDVDYQLIRAPEIGMTLVRGRMGGNGAPFNVGEMSVTRCVVRLADGRTGYSYLAGRDKVHAELAALADAHLQGAHPSIWLSDLIRSLANAQAERRAQKEADTAATKVEFFTLVRGEN
>NZ_LS483372.1|WP_073636930.1|2093973_2094678_+|phosphonate-metabolism-transcriptional-regulator-PhnF
MQLSRQDEPVYRELADILRRELSSYQAGDFLPGEVQLAERFGVNRHTLRRAIDELVFEGSLLRRQGKGTQVLDRPLIYPMGAETSYSQSLSAQGVGVEALLLKRRYCFASREEAQQLGIAEMAPMIELQTLRKLNHQPVSLIRHRYCASRAPLLADYNGGSLRHYLRERDLPLTRTHSLIGARLPNRDEAALLMMPRHLPALTVFTLSRDRDGRPVELAQSTSRSDRFQYQVVT
>NZ_LS483372.1|WP_157750151.1|2105199_2105973_+|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MINASSVFNFYVPNPAVPATPGNRYADKSASAVIGRPEPEPGVSDTVYGFNSNTGNRSMSLHSLSGAPRFTVQDRRGNDTLDFSGFSQNQTIDLRDGAASSVGGLRNNVSIGKGVTVENAVGGAGHDVLIGNNVDNVLTGGTGGDVLWGVGGTNTFRYEKASDSPYYNADLIMDFVSGRDKIDLTQMMKEINTPLQLVDDYTGRIGDTVVKFNPQSGRYFVGVDLTERCESNFLIKSARWVRPSDLVGPVVERQRPV
>NZ_LS483372.1|WP_003210603.1|2107030_2107435_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MQYPICIEWGDDFVATGIQIPDIPGAVTAGDSFEEAYNAAVEVAHILLQEIAAEGRVIPMPTSVAAHHDNEEYAGMGWGMLELDISPYLGKTEKVNVTLPGYVIQRIDRYVREHKVKSRSSFLADAALEKLVRL
>NZ_LS483372.1|WP_069552277.1|2107440_2108637_-|MFS-transporter
MNATPHAASTMTRGMVMLFAFCCGAIVANIYYAQPIIELIAPDIGLTPAMASLIVSLTQIGYALGLFFLVPLGDLLENRKLMIATTVVAIASLLGAAFTEQPNLFLLVSLLIGFSSVSVQILIPLAAHLAPAESRGRVVGSIMGGLLLGILLARPVSSVVADHFGWRAMFMAAAALMAFISVVLLLTIPKRQPDHSASYGQLLRSLGTLLRQQPVLRQRAFYQGCMFATFSLFWTAAPLELARNHGLSQSEIALFALVGALGAIAAPIAGRLADAGHTHRASLLAMLFAALSFLPAFVHPLYSVIGLAVTGVVLDFCVQMNMVLGQRAIYALDANSRSRLNALYMTSIFIGGAFGSAIASSVYEHGGWLGVMLVGSAFPLVALLRFLSASRQGAVATA
>NZ_LS483372.1|WP_053255210.1|2108815_2109430_+|hypothetical-protein
MKITLNKMLMASTLAAAMAIGLANAAEAPRVGVRGAITAMDGDAMQVKVSSGEDVTVHLTNATQVRAVTLAKIDEIKPGSYIGSAAMPNADGTLTALEVHVFPPAMAGTGDGHRAFDLKEGSSMTNGTVGDLVVSHGRTLTVKYKGGEQKIVVPDDVPIVNLEPGDRSLLKPGVKVVLFAAQGADGTITAQAISAGKDGVTPPM
>NZ_LS483372.1|WP_053255211.1|2109564_2110569_-|sulfate-ABC-transporter-substrate-binding-protein
MKKLVSASLLAAGLALAGAVQAAPVTLLNVSYDVMRDFYKDYNAAFQKHWEAEHPNDKLTLQMSFGGSSKQARSVIDGLPADVITMNMATDINALADNGKLVPDNWVTRLPNNSAPFTSATVFIVRKGNPKALKDWPDLLKDGVQVIVPNPKTSGNGRYTYLSAWGYVLKNGGDEEKAKKFVGDLFKHAPVLDTGGRAATTTFMTNQIGDVLVTFENEAEMIAREFGRDQFEVIYPSVSAEAEPPVSIVDKVVEKKGTKVAAEEYLKYLWSPEGQEIAANNYLRPRDPAVLAKYTDRFPKVDFLSVEKTFGDWRTVQKTHFNDGGVFDQIYSGQ
>NZ_LS483372.1|WP_053255212.1|2110674_2111499_-|ion-transporter
MDSNSDWRQRLYVMVFQSDTAAGRRFDGILLLIILASIVIVMLDSIDEIHQNYADVLAYIEWGFTVIFAIEYGLRLYCSPKPLRYAFSFYGLVDLLAIVPGILALYYSDAQYLLIIRIIRMLRIFRVLKLSPYLKQANYLMAALRGSKQKIVVFLVSVCTLVTVFGTLMYVIEGPEHGFTSIPKGIYWAIVTLTTVGFGDIVPKTPLGQVISSLVMITGYSIIAVPTGIFTAELASAMRGEQLQHACPVCKKDSHEPNAAFCSRCGSNLFHKVE
>NZ_LS483372.1|WP_053255213.1|2111530_2112403_-|urea-transporter
MPNQPCPDWAEALLNGFSQIFLQRQPLCGLLCLLAILIGAPTLLGGALLGGVAGLLTAQRRGYPKAERQAGLYSYNGVLLGLLISQHFAWSALLPPLILACGGLSAMLTRQWLKHARQPDDLSAYTAPFVGLGWLLIGSAPQPTFALVAPDVLSVVSAPFTGLAKVMLLDQPLAGVLIAVGLVLANRRAALWALIGATAGVLVALLLDEPASALLGLYSYNPALAALALSQSRRQPWLPLLGILLAIILTPGFAALHLPALTAPFILACWLVRATQRMFKARVDSPFESP
>NZ_LS483372.1|WP_053255214.1|2112534_2113950_-|pyruvate-kinase
MTPDKKVKILATLGPATDGIDDIRELVQAGVNIFRLNFSHGDHADHAQRYQWIRQVERQLNYPLGILMDLQGPKLRVGQFAEGKVQLVRGQALRLDLDPTPGDQCRVNLPHPEIIAALEPGMDLLLDDGKLRLRVITKHAGAIDTTVLNGGELSDRKGVNVPQALLELSPLTAKDRRDLSFGLELGVDWVALSFVQRPEDIREARELIGDKAFLMAKIEKPSAVQRLQAIAELSDAIMVARGDLGVEVPAESVPQIQKDIISTCRQLGKPVVVATQMLESMRFSPAPTRAEVTDVANAVAEGADAVMLSAETASGEYPLEAVQMMSKIIRQVENGPDYQTQLDVSRPKADATVSDAISCAIRRISSILPVAVLVNYSESGSSSLRAARERPVAPILNLTPNLSTARRLSLAWGVHSVVNDRLRQVDEVCSTALEIAQAQGMAQRGDTLVITAGVPFGQPGSTNSLRIETLI
>NZ_LS483372.1|WP_053255215.1|2113939_2115220_-|glycerate-kinase
MSVDPQHLLRELFATAIDAAHPRHVLEPYLPADRTGRVIVIGAGKAAAAMALVVENGWQGEVTGLVVTRYGHGAPCKKIEVVEAAHPVPDAAGLAVATRVLELISHLGEDDRVIFLLSGGGSALLALPAEGITLADKQAINKALLKSGATIGEMNCVRKHLSAIKGGRLAKAAWPATVYTYAISDVPGDQATVIASGPTVGDPSTSQQALAILKRYGIDAPASVRSWLQSPASETVKPGDPVLARSHFQLIARPQQSLEAVAVKVRQAGFSPLILGDLEGEARDVAKVHAGIARQIVLHGQPLAAPCVILSGGETTVTVRGNGRGGRNAEFLLSLTDSLKGLPGVYALAGDTDGIDGSEDNAGAIMTPTSYARAEALGLSASDELDNNNGYGYFAALDGLIVTEPTRTNVNDFRAILILETAHHDA
>NZ_LS483372.1|WP_053255216.1|2115409_2116300_-|2-hydroxy-3-oxopropionate-reductase
MAKIGFIGTGIMGQPMAANLQKAGHQLFLSEHHGKAPQALIDAGAVALTNPQQVAQEAEFIIVMVPDTPQVDDVLFRTDGVAAGLSPNKVVIDMSSISPTATKAFAAKINQTGAHYLDAPVSGGEVGAKGGTLSIMVGGEPQTFERALPLFQSMGKNITLVGGNGDGQTAKVANQIIVALNIQAVAEALLFASKNGADPAKVREALMGGFASSKILEVHGERMIKGTFDPGFRINLHQKDLNLALAGAKELGINLPNTAGTQQVFSTCTAIGGGNWDHSALIKGLEHMANFSIRDQ

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Crispr_ID: NZ_LS483372_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483372_2

3893793-3893937

Orphan

Consensus_repeat	Method
CGCGAATGCAGGGTGCCAGTCGCTACATATGTTGACTGATACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483372_2

>merge|NZ_LS483372|2|3893793-3893937|CRISPRCasFinder
CGCGAATGCAGGGTGCCAGTCGCTACATATGTTGACTGATACGCGCTCGATCAAATGCCTGAAACCTGAAACGCGGTAAAAAATGTGGGAGCGGGCTTGCTCGCGAATGCAGGGTGCCAGTCGCTACATATGTTGACTGATACGC

>NZ_LS483372|2|1|3893793-3893937|CRISPRCasFinder
CGCGAATGCAGGGTGCCAGTCGCTACATATGTTGACTGATACGC	GCTCGATCAAATGCCTGAAACCTGAAACGCGGTAAAAAATGTGGGAGCGGGCTTGCT
CGCGAATGCAGGGTGCCAGTCGCTACATATGTTGACTGATACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483372.1\|WP_053256687.1\|3889327_3890464_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226669
NZ_LS483372.1\|WP_053256691.1\|3895596_3896535_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_LS483372.1\|WP_053256698.1\|3903906_3905046_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483372.1\|WP_053256683.1\|3884032_3885217_-\|XylR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380485
NZ_LS483372.1\|WP_053256685.1\|3886775_3887777_+\|D-xylose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188237
NZ_LS483372.1\|WP_053256695.1\|3900400_3901285_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|224024
NZ_LS483372.1\|WP_053256686.1\|3887773_3889327_+\|D-xylose-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184134
NZ_LS483372.1\|WP_053256684.1\|3885357_3886674_+\|xylose-isomerase	unknown	unknown	gnl\|CDD\|235487
NZ_LS483372.1\|WP_053256689.1\|3892017_3892956_-\|pectate-lyase	unknown	unknown	gnl\|CDD\|226384
NZ_LS483372.1\|WP_053256790.1\|3893987_3895487_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_LS483372.1\|WP_053256692.1\|3896947_3898813_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|235740
NZ_LS483372.1\|WP_053256693.1\|3898818_3899688_+\|UbiA-family-prenyltransferase	unknown	unknown	gnl\|CDD\|260127
NZ_LS483372.1\|WP_053256682.1\|3882725_3883991_+\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|335962
NZ_LS483372.1\|WP_053256690.1\|3893473_3893770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483372.1\|WP_053256697.1\|3902491_3903928_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366747
NZ_LS483372.1\|WP_053256688.1\|3890517_3891765_-\|glycoside-hydrolase-family-68-protein	unknown	unknown	gnl\|CDD\|367086
NZ_LS483372.1\|WP_053256696.1\|3901281_3902502_+\|metabolite-traffic-protein-EboE	unknown	unknown	gnl\|CDD\|366542
NZ_LS483372.1\|WP_053256681.1\|3880247_3882656_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_LS483372.1\|WP_053256694.1\|3899684_3900368_+\|EboA-domain-containing-protein	unknown	unknown	unknown
NZ_LS483372.1\|WP_053256699.1\|3905056_3907420_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275285

Protein	Function_ID	Function_description	E-value
NZ_LS483372.1\|WP_053256687.1\|3889327_3890464_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	3.88993e-147
NZ_LS483372.1\|WP_053256699.1\|3905056_3907420_+\|hypothetical-protein	gnl\|CDD\|275285	TIGR04492, polyketide_synthase, iminophenyl-pyruvate dimer synthase VioB. Following the action of a flavin-dependent L-amino acid oxidase that converts L-tryptophan to indole-3-pyruvate imine, the enzymes VioB (this family), RebD, and StaD can ligate two molecules, forming a coupled iminophenyl-pyruvate dimer. In the violacein biosynthesis pathway, this compound is acted on by VioE before it cyclizes spontaneously to chromopyrrolic acid. In the pathways of homolog StaD (staurosporine), chromopyrrolate is formed, and the enzyme is referred to as chromopyrrolate synthase. RebD is very similar to StaD, but acts on chlorinated Trp-derived molecules. [Cellular processes, Biosynthesis of natural products].	7.00204e-11
NZ_LS483372.1\|WP_053256683.1\|3884032_3885217_-\|XylR-family-transcriptional-regulator	gnl\|CDD\|380485	cd01543, PBP1_XylR, ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.26593e-94
NZ_LS483372.1\|WP_053256685.1\|3886775_3887777_+\|D-xylose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188237	TIGR02634, D-xylose-binding_periplasmic_protein, D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.96229e-174
NZ_LS483372.1\|WP_053256695.1\|3900400_3901285_+\|TatD-family-hydrolase	gnl\|CDD\|224024	COG1099, COG1099, Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only].	1.09901e-90
NZ_LS483372.1\|WP_053256686.1\|3887773_3889327_+\|D-xylose-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184134	PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional.	0
NZ_LS483372.1\|WP_053256684.1\|3885357_3886674_+\|xylose-isomerase	gnl\|CDD\|235487	PRK05474, PRK05474, xylose isomerase; Provisional.	0
NZ_LS483372.1\|WP_053256689.1\|3892017_3892956_-\|pectate-lyase	gnl\|CDD\|226384	COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism].	5.85615e-57
NZ_LS483372.1\|WP_053256790.1\|3893987_3895487_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_LS483372.1\|WP_053256692.1\|3896947_3898813_+\|3-dehydroquinate-synthase	gnl\|CDD\|235740	PRK06203, aroB, 3-dehydroquinate synthase; Reviewed.	0
NZ_LS483372.1\|WP_053256693.1\|3898818_3899688_+\|UbiA-family-prenyltransferase	gnl\|CDD\|260127	cd13964, PT_UbiA_1, UbiA family of prenyltransferases (PTases), Unknown subgroup. Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.	4.28609e-56
NZ_LS483372.1\|WP_053256682.1\|3882725_3883991_+\|carbohydrate-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	9.4739e-96
NZ_LS483372.1\|WP_053256688.1\|3890517_3891765_-\|glycoside-hydrolase-family-68-protein	gnl\|CDD\|367086	pfam02435, Glyco_hydro_68, Levansucrase/Invertase. This Pfam family consists of the glycosyl hydrolase 68 family, including several bacterial levansucrase enzymes, and invertase from zymomonas.	0
NZ_LS483372.1\|WP_053256697.1\|3902491_3903928_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	1.52858e-55
NZ_LS483372.1\|WP_053256691.1\|3895596_3896535_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.60362e-73
NZ_LS483372.1\|WP_053256696.1\|3901281_3902502_+\|metabolite-traffic-protein-EboE	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	0.00090305
NZ_LS483372.1\|WP_053256681.1\|3880247_3882656_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0

>NZ_LS483372.1|WP_053256690.1|3893473_3893770_+|hypothetical-protein
MNKAVPDPPLSSAKARAAFNRAIDHYLPTQGVQIEDLSFEDALLYTASLLDSASATTLNCSEMLASPERAKILAVWHLLEMAKTTVDRSIKCLKPETR
>NZ_LS483372.1|WP_053256689.1|3892017_3892956_-|pectate-lyase
MSYPESKLTGLTGFALAAKVTGGWAGQVVSITTLDQLKANIGDTTPRVLVINSNISAASLTKVNMGANKTLIGSFQNRTLENIHLRATAQSQNIILQNIIFKHSASIKANDDIQVYLNYGSQYWIDHCSFVGHSWSTTDGSEDKLVYIGEKADYATISNCFFGNHKYGLIFGHPADDNNPAFNGYPRLTLCHNRFDNMEVRAPGLMRYGYFHVYNNYVNNFHLGFTLAQNANILSESNYFGEGSQNNGMLDDKGTGTFTDTNSVPAITNQKSPDAKWTARSNYNYTLKTAAQAKEFTQKHAGAQAVALVFGS
>NZ_LS483372.1|WP_053256688.1|3890517_3891765_-|glycoside-hydrolase-family-68-protein
MKHANHTPTRWTRADALKVNENDPTTTQPLVSPDFPVMSDTVFIWDTMPLRELDGTVVSVDGWSVIFTLTADRRPHDPQFINADGRYDIKRDWEDRHGHARICYWYSRTGKDWVFGGRVMAEGVSPTTREWAGTPILINNHGDIDLYYTCVTPGATIAKVRGRVVTSDSGVTLEGFTEVKPLFEADGTYYQTEAQNATWNFRDPSPFIDPNDGKLYMVFEGNVAGERGTHAVGPDELGLVPPGHEDVGGARYQVGCIGIAVAKDLSGEEWEILPPLVTAVGVNDQTERPHYVFQDNQYYLFTISHKFTYADGVTGPDGVYGFVSEHLFGPYTPMNGSGLVLGNPPSQPFQTYSHCVMPNGLVTSFIDSVPTTGDDYRIGGTEAPTVRIVLKGDRSFVQEAYDYGYIPPMRDVVLS
>NZ_LS483372.1|WP_053256687.1|3889327_3890464_+|sugar-ABC-transporter-permease
MNQVKQLFTRYKMLALVIAVAIIWLFFSWQTDGGFVTPRNLSNLLRQMSITGILACGMVLVIISGEIDLSVGSLLGLLGGLAAILDVVYHLPLLANLSLVALCGLMIGLANGYMTAYLRIPSFIVGLGGMLAFRGILLGITGGTTIAPVSPSLVYVGQGYLPHNVGVGLGVLLFALTLFLTWKQRRNRALHGLAAHALVRDLLRVALIGAVLAGFVTTLNSYDGIPVPVLLLLVLLGVFSYVTSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCALAGMVNTARLAAGSPSAGNMGELDAIAACFIGGTSMRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGSILVLAVWVDVSTRAGRR
>NZ_LS483372.1|WP_053256686.1|3887773_3889327_+|D-xylose-ABC-transporter-ATP-binding-protein
MTAMADYLLQMNGIVKTFGGVKALNGIDIKVRPGECVGLCGENGAGKSTLMKVLSAVYPYGTWDGEILWDGQPLKAQSISETEAAGIVIIHQELTLVPDLSVAENIFMGHELTLPGGRMNYPAMLQRAEALMRELKVPDMNVALPVSQYGGGYQQLVEIAKALNKQARLLILDEPSSALTRSEIEVLLDIIRGLKAKGVACVYISHKLDEVAAVCDTIAVIRDGQHIATTAMADMDIPQIITQMVGREMSNLYPTEPHEVGEVIFEARNVTCYDVDNPKRKRVDAISFVLKRGEILGIAGLVGAGRTELVSALFGAYPGRHTCEVWLDGQLIDTRTPLKSIRAGLCMVPEDRKRQGIIPDFGVGQNITLAVLDRYAHLTRIDAEAELGSIDQQIARMHLKTASPFLPITSLSGGNQQKAVLAKMLMAKPRVLILDEPTRGVDVGAKYEIYKLMGALAAEGVSIIMVSSELAEVLGVSNRVLVIGEGQLRGDFVNQGLTQEQVLAAALSQHNNPRKTA
>NZ_LS483372.1|WP_053256685.1|3886775_3887777_+|D-xylose-ABC-transporter-substrate-binding-protein
MKAFKRTLLATALALLALPVMADSAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVFVQSADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILNADIDAYISFDNEKVGEMQANGVLQAAPKGNYFLLGGAPTDNNAKVLREGQMKVLQPAIDKGDIKVVGQQWVKEWNPTEALSIVENALTRNNNKIDAIVASNDATAGGAIQALAAQKLAGKVPISGQDADLAAVKRVIDGTQTMTVYKPLKLIASEAAKLSVQLARNEKPTYSSQYDNGSKKVDTILLTPTPLTKANIDLLEKDGFYTKEQIAGQ
>NZ_LS483372.1|WP_053256684.1|3885357_3886674_+|xylose-isomerase
MPYFPGVEKVRFEGPDSDAALAFRHYDASKIILGKPMREHLRMAACYWHTFVWPGADMFGVGTFKRPWQRSGDPLELAIGKAEAAFEFFSKLGIDYYSFHDTDVAPEGSSLKEYRNHFAQMVDHLERHQEQTGIQLLWGTANCFSNPRFAAGAASNPDPEVFAYAAAQVFSAMNATLRLKGANYVLWGGREGYETLLNTDLKREREQLGRFMRMVVEHKHKIGFKGDLLIEPKPQEPTKHQYDYDSATVFGFLHEYGLEHEIKVNIEANHATLAGHSFHHEIATAVSLGIFGSIDANRGDPQNGWDTDQFPNSVEEMTLATYEILKAGGFKNGGYNFDSKVRRQSLDDVDLFHGHVAAMDVLALALERAAAMVQNDRLQQFKDQRYAGWNQPLGQAVLAGEFSLASLAEHAFAHELNPQAVSGRQEMLEGVVNRFIYR
>NZ_LS483372.1|WP_053256683.1|3884032_3885217_-|XylR-family-transcriptional-regulator
MKTLPPVHRIALLFNGSKIYDRGIITGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGDGIIADFDDPLIGEALADIKLPVVAVGGSYQDARAYPTGIPYVATDNHALMRMAYEHLIEAGLSRFACFSLPQAQANRWAQERENAFRSLLQRDGLHVEVYRGLGTSAPLWDSAVEQQIAWLHSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVIQGTETMGRTAAALLHQMLHGKPCAGTQILVPPDAINVQASSLHQPLGNPYVMQALLFIRQYACQGIKTAQVAAYVGVSRSSLESHFRKARGCSVHDEILRFKLAAAAKGLENQTLAIAEVATRCGFKSAQYLHTVFRREFGCTPREYQQGAPVSA
>NZ_LS483372.1|WP_053256682.1|3882725_3883991_+|carbohydrate-porin
MTSTSQRPIGRLVLGLAFAAALPAQADDTTLTGDWGGLRRELDAQGIRFTGDYSGETAYNADGGLHRAARYSQNIKLGVQLDLGKLYGLTNGDRIQLTINDRRGNSASEDLVGNRLPIQENYGGLYTRLTELSYERTLFTPALNIKLGYMAMGNDLGGLDSGILCNFMNAGFCGHPLNMSGGSGWTNYPNARLGARVKYDFSPNWQLRVAAFNVDPDSNGNSSRAWRLDPKRTTGTVVPIELVYKHAGSLPGEYKLGYYYDSSDVKRIGSNNTVSGRGGHYLLIDQAVWASRSSAGRALHAFGQYSAASEAASPFSKWYGAGVVLYKPFEGRPRDTVALGYGRAVPNPRSRDVQALAAFNAGTEYPNLNNAEQLIELSYGYQATPWLTLRPDVQYIIEPGAFSGVDIDNALVLGLQVKALF
>NZ_LS483372.1|WP_053256681.1|3880247_3882656_+|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MKRASRATGASRYLLLGLGVVIALLGVALAVGGAKLVSLGGSWYFLVGGVAMAVSGLMIAQRKPAGAWLFAAFLVGTAVWAVADVGLVFWPLFSRLFMFAVIGLVVALMYPLLVGRPARGAYGIAAVMAVGVAVAAGNMFVAHPSVAPTGTGPGITPVAAADAQKDWAHYGNTEGGSRFAALDQINRDTVNKLKVAWTYHTGDVAISDGNGAEDQLTPLQIGNKVFICTPHNNLIALDADTGKELWKNEVNAKSAVWQRCRGMAYFDATATIAQPTQPNSSPIIAASVPAGAQCQRRLLTNTIDARLIAVDADTGKFCEDFGSHGQVDLKAGLGAVPDSYYQLSSAPLIAGTTVVVGGRVADNVQTDMPGGVIRGFDVISGQMRWAFDPGNPEDKQAPAAGSTYVRSTPNSWAPMSYDPLMNTVFLPMGSSSTDIYGVERTQLNHKYGASVLALDASTGAEKWVYQTVHNDLWDFDLPMQPSLIDFTPPGSNKPVPAVVIGTKAGQIYVLDRATGKPLTDVKEVPVKAANIPNEPYSLTQPKSVGMPQIGAQTLRESDMWGATPYDQLLCRIDFKGMRYDGLYTAPGTDKSLSFPGSLGGMNWGSISTDPVHGFIFVNDMRLGLWIQMIPSQNKAQAASGGEALNTGMGAVPLKGTPYAVNKNRFLSVAGIPCQAPPFGTLTAIDMKTQQIAWQVPVGTVEDTGPLGIRMHLPIKVGLPTLGGTLSTQGGLIFIAGTQDFYLRAFNSGNGDEVWKARLPVGSQGGPMTYVSPKTGKQYIVITAGGARQSTDRGDYVIAYALP
>NZ_LS483372.1|WP_053256790.1|3893987_3895487_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTATIEHYINDERVSRDDRYQDVYNPATGDVTARVALASRQTVCEAVAAAQAAFAGWADTPPIRRARVLFEYLHLLRERKDDLARIIVAEHGKVFTDAQGEVDRGIDILEFACGIPNLLKGEHSDQVSRGMDNWTLRQPLGVVAGVTPFNFPVMVPMWMYPIAIAAGNTFILKPSPTDPSASLFMAELLREAGLPKGVFNVVQGDKEAVDALIEHPDVRAVSFVGSTPIAQYIYETGARHGKRVQGLGGAKNHMVVMPDADIEKTVDALMGAAYGSAGERCMAISVAVLVGDVGDKVIAALTERAQQLRITDGRDLKAEMGPIVSRAALQRISGYIEQGVQAGAQLLLDGRDYVPSEPGLQNGFWLGATLFDHVTKDMSIYREEIFGPVLACVRVDDFAEAIKLVNDHEFGNGVSCFTRDGNIAREFARRIEVGMVGINVPIPVPMAWHGFGGWKKSLFGDMHAYGTEGVRFYTKQKSIMQRWSESIEQGAEFAMPVSK
>NZ_LS483372.1|WP_053256691.1|3895596_3896535_+|LysR-family-transcriptional-regulator
MEKAEIEGLWTHIHWLSVLEEHGTYTAAAARLGVSKSAVSQRISDLEKATGTRLVTRTTRSVRLTDAGLSLTREVRSAYEHIARSFSSVRDSAGEIRGLVRLTAPVAFARQQLVPHLPAFLQQYPQVRIQLDVSDALSSLAAEGYDLAVRHGFQVPETHVAWKLCDTTSVLVATQDYLQHHGEPREPGDLTAHNCLYYPRGADHPAWTFERGGKTVERVTVPISGSFSTNNSEALRDSALNHLGIALLPDFSAHAALTSGKLVQVLKGWTLKGAFADEIYLIRPYSPHVPKSVSTLVSYLKDKLSGGFRFTG
>NZ_LS483372.1|WP_053256692.1|3896947_3898813_+|3-dehydroquinate-synthase
MKRSRWYRAFSKKGPAEHFWLSLLCFSALVIASFLLFEQQIEDFLVHLNLYQPSTPAQTLNLALLLIALLALDVVLPVPSSMVALLAVAVLGSVGGYLVIVIGLCLGAGLGYALGAGYFRLLAGRLGLHQRSPGQLGYRLGTLSLICLRGVPVLAETSVVAAGMQRYPLRAFLLITTLANAGLALAYTAIGTFLIEQNALLVTLLASMVLPVVFVAGYSLLKRKPGVEPPLRGRFEVSYDYPVIFTDHLFEPRNPCLHRVLTAQHHAPVTVMVFADEQLLHSAPQLREQIDAYFAAHADLHLQTAPLAVPAGELSKTSQVLEQLYTDMLQHGLDRHCYVLALGGGAVLDAVGYACATFHRGIRLIRIPSTVLAQNDAGIGVKNGINAFGQKNLLGAFYPATAVINDFQLLTSLTRRDQIAGLAEAVKVALIKDPAFFEWMERHADALAHFDHAASRYAIRRCAELHLGHITGAGDPFERGNGRPLDYGHWAAHKLENLSHHRLRHGEAVAVGMALDGLYANALGLLSDVDTQRVMSLLRKLGFNLCPPELSLQDAQGRSPLLLGLEEFRQHLGGQLSIPMLNGIGQSVDLHEIDSTQMEAALHRLSSRSAAPLALGEGYAQ
>NZ_LS483372.1|WP_053256693.1|3898818_3899688_+|UbiA-family-prenyltransferase
MKTWMTLGRVSNLPTVWTNTLAAALLASSAGAMAPPSSLVWVLLLITLSLLYLAGMLLNDLLDADWDQQHHNPRPITLGLASRQHVGLATALLLILAAAAVLGLSRLIAEPHWLLGSVVLLVGCIFGYNLLHKKYAHSVWLMGACRSALYLTAAASLAVPPEPIWLCAILLGVYISGLTYLARQEHRNQLISRLPLLLMLSPLALAIYANNVWFWPVLLLWLGWLGWHYWTYLAHPQQRKVRAFIGAGLAALPLFDALVLAVANQPLGSLLCVLVFFLLPHFQRWIKPT
>NZ_LS483372.1|WP_053256694.1|3899684_3900368_+|EboA-domain-containing-protein
MNMRLDRLTEQRQALRQQLQAPQLQWWQQAQAQLAQQPDATTAALLSGQCKRHLPGHTVALARALALAHALEHTPQDAHLPLLRQLFLWGDDQEKIALLGALDWLDSDGVCLELALQAGRTSNPQVFAALALDTAYPSRHYPERAFHQLVLKALGMGLDIGRLVGLPQHHSVSLNQLALDLLDEQLAAARSVSPGLPRVIAFDLLSPAQHQRLRGLRLPPEWHAYLN
>NZ_LS483372.1|WP_053256695.1|3900400_3901285_+|TatD-family-hydrolase
MLKYFDPHIHMVSRTTDDYQNMAAAGITGVIEPAFWQGQARTSVGSFVDYFDTLLGWERFRASMFGIHHFCTIGLNPKEANDLSIANEVLEILPRYLVKDGVVAVGEIGYDDITPEEDRFLAAQLELAKQFNLPVLVHTPHRDKIGGTKRTLAVIREVGIAEHLVIIDHLNELTLPLVLDSECWRGHSIYPNTKMSEQRMVALLMEYGTEKMVVNSAADWGISDPLKVPKTGQAMLAAGFTEAQVEQVLFHNPVDFFAQSGQLDKGLVSTPLPIDQRKQWQENSALRGQEPVVK
>NZ_LS483372.1|WP_053256696.1|3901281_3902502_+|metabolite-traffic-protein-EboE
MSRRSGWTAPQVGYCSNVHPTRDLAGLRASIEQHFQGVRQLRGLREQDSGLWICAHAAAQLQQATACAPFLELLDRTGLRLTSLNGFPYGEFHQGAVKAAVYLPNWADPQRLDYSLNLARILAQALPADCHHGVISTVPLGYAATWTAPMQARADEHLNQLTAALASLHRETGKQIVFCLEMEPDCVLENTAQAIAFFQRRQRLDPNHAYLALCFDVCHQAVMFEDCYQSLARLRQAQVPVGKIQLSNAMICRLPTQDALRREHVLNTLSTFTETTYLHQVKALDPYGRVISWPDLPAALADCNGLRELRIHFHIPLFSEHLLLPELSGSQAALAQTFDYLAAHGDFRPVLEVETYSWGVLPAQLRPTTERAQLEGIAAELRWVEEQLRQRNLLLALMHEAYAHAL
>NZ_LS483372.1|WP_053256697.1|3902491_3903928_+|alkaline-phosphatase-family-protein
MRSEQPLLLINVVGLTPSLLGEATPHINALLKTAQMAHLQPVFPAVTSTVQASILTGAPPSQHGIVGNGWYFRDQAEVRFWLQPNALIQGEKVWHTLKRELPGFRCSQLFWWYNMYADVDAAITPRPHYPADGRKQFGLYSSPPGLHEQIERQIGEFPFPGFWGPAAGIASSRWIVDCAMAEFQINRPHLQLIYLPHLDYSLQRLGPDHPSIADEVRAIDMQVGRLLTFAQAQGAAVMLLSEYGIEAVEQSLSINRVLRAEGLLQVRQSLSWELLDPGASAAFAVADHQVAHVYVKQAQDIPRVKALLQRQPGIEQVLDKAEQRAWQLDHPRSGELVAVAAAGFWFDYYYWLDDRKAPDFARTVDIHRKPGYDPVELFIDPAIRFPRLKVARRLLQKKLGFRYYMDLIPLDTALVRGSHGRLPSSAQTGPLLITNCALALPQHLAATAVKQLLLEHFLGRPHLELATAKEFPCGEPYL
>NZ_LS483372.1|WP_053256698.1|3903906_3905046_+|hypothetical-protein
MRRALSITVLSALAGLAHAQDATPFDCTQFLQFGGNLDKTRAAFVQSRDTLAWNWFACLNQTVSAQSPDRVWETMKPSDQVYLSDGAQPLPYAEREPLPNDVIAQAQKLGMNLNRMFHNLNATQQVDGLILQMGGQVPAAQKGQPVRFQLLMGQDTFNYIVQQNVYNVNGQAALTSDLAFPSTAWELKAAWLWIGNDPTYQQQLVKDGYYIAQAYYQQDGQYRVGYAALSGLHVINKLNPDWVWTTFENRNNSKYTVNNATPATPMTNSTGPTKAAQPVNTTFQANFPALAQYELIGVQSNTVPTLLANSQLESAFQSESSCFACHSTAAYSAKKGYFNFALKQQGGIVYPTAELPASDFVGYHKLDFVWSLKRAQWQR
>NZ_LS483372.1|WP_053256699.1|3905056_3907420_+|hypothetical-protein
MSVLNFPRIYLGGHMFWNPPTANNNDMYPLYDAVKMQMNWPFLKAFNITPENAVSTLLPWTIAPLSPASVPAYVMQVPGNAGQLSTPMIPGEWNLFGDNACGTVSYNQTQSVVTGGELPDGGYVSQDPLINQSFQLLGNPFGGAPSSPARFVDVSPWQNTFTALYFDKLVLGNAQCGLTLNRQFRMLDRFLNFNWANLGGLAYVTTTWQTCFPKENLEWVIGNSALLQNLQTQMAQQNAKGLMFRFSTYLTCYDKNGILNNYPPIDTHSSSAAAQAKVQAMYQQGLDNVSDIFFNPAYSRTVGTLGLWFEDEFPTAPAGRRLVPASPVPIYKTTPAQSTPAQLGVISAQAHGATLSLDLSNAFPFYPIDKTAAIPVAAKYQAGNYQIGIRQNGQFNPLASFGYDDYQQAAFDKRSGILDLTLTAQAQTQLQTGTLELQLQGAAAVTAATQQMWTAEVVESASFIDVGDTRTLQVMVQYDGLPAPAGTTLWVAEYGNAYMLCTTDYYLAFSNPANFTLFNNDPQNPANNSANLPQFTGASTLLSQVTEGTGRQLMATRLAVAADQMTPVTYQAFLPTPAAVALSPTLKFANPIAMQGTLQDPLNSAVHYSLTKIQTDANGIANLTVTGVAPGFPTLRFFLQEGQQAPTIPFSFPLPTAFTDFLAPLRVLPLEPQLQQDFVNAWNRIYMNKDAGSVIWETFIYPFILQPYYYLYPIMSKFMPLNSLTRIEGAVDQLIVLISKEYQEQSTLAMPITRDMPQSRRAVLELWAQALVKRNYPPVPLSMSDYD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LS483372_1	1.2\|2104198\|18\|NZ_LS483372\|CRT	2104198-2104215	18	NZ_LS483372.1	2103454-2103471	1	0.944
NZ_LS483372_1	1.3\|2104234\|30\|NZ_LS483372\|CRT	2104234-2104263	30	NZ_LS483372.1	2104114-2104143	2	0.933
NZ_LS483372_1	1.3\|2104234\|30\|NZ_LS483372\|CRT	2104234-2104263	30	NZ_LS483372.1	2104126-2104155	2	0.933

1. spacer 1.2|2104198|18|NZ_LS483372|CRT matches to position: 2103454-2103471, mismatch: 1, identity: 0.944

ggatccgaagccagaccc	CRISPR spacer
ggatccgaagcccgaccc	Protospacer
************ *****

2. spacer 1.3|2104234|30|NZ_LS483372|CRT matches to position: 2104114-2104143, mismatch: 2, identity: 0.933

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
ggatccaaagccggatccgaagccggatcc	Protospacer
************************.**.**

3. spacer 1.3|2104234|30|NZ_LS483372|CRT matches to position: 2104126-2104155, mismatch: 2, identity: 0.933

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
ggatccgaagccggatccgaagccagatcc	Protospacer
******.********************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483372_1	1.1\|2104150\|30\|NZ_LS483372\|CRT	2104150-2104179	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4229446-4229475	6	0.8
NZ_LS483372_1	1.1\|2104150\|30\|NZ_LS483372\|CRT	2104150-2104179	30	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1348588-1348617	6	0.8
NZ_LS483372_1	1.1\|2104150\|30\|NZ_LS483372\|CRT	2104150-2104179	30	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	684673-684702	7	0.767
NZ_LS483372_1	1.3\|2104234\|30\|NZ_LS483372\|CRT	2104234-2104263	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	545908-545937	7	0.767
NZ_LS483372_1	1.3\|2104234\|30\|NZ_LS483372\|CRT	2104234-2104263	30	MK376351	Pseudomonas sp. strain ANT_H62 plasmid pA62H2, complete sequence	36559-36588	8	0.733
NZ_LS483372_1	1.1\|2104150\|30\|NZ_LS483372\|CRT	2104150-2104179	30	KJ578766	Propionibacterium phage PHL067M09, complete genome	7732-7761	9	0.7
NZ_LS483372_1	1.1\|2104150\|30\|NZ_LS483372\|CRT	2104150-2104179	30	NC_027380	Propionibacterium phage PHL067M01, complete genome	7732-7761	9	0.7
NZ_LS483372_1	1.1\|2104150\|30\|NZ_LS483372\|CRT	2104150-2104179	30	KJ578773	Propionibacterium phage PHL092M00, complete genome	7750-7779	9	0.7
NZ_LS483372_1	1.1\|2104150\|30\|NZ_LS483372\|CRT	2104150-2104179	30	JX570709	Propionibacterium phage PHL067M10, complete genome	7732-7761	9	0.7

1. spacer 1.1|2104150|30|NZ_LS483372|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

agatccgaagccggatccgaagccagaccc---	CRISPR spacer
agacccgaagccggatccgaag---gattccga	Protospacer
***.******************   **..*

2. spacer 1.1|2104150|30|NZ_LS483372|CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 6, identity: 0.8

agatccgaagccggatccgaagccagaccc	CRISPR spacer
agtgccgaagccggagccgaagccatccgc	Protospacer
**  *********** *********  * *

3. spacer 1.1|2104150|30|NZ_LS483372|CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 7, identity: 0.767

agatccgaagccggatccgaagccagaccc	CRISPR spacer
cgatccgaagccggatccaaagacaatgcg	Protospacer
 *****************.*** **.  *

4. spacer 1.3|2104234|30|NZ_LS483372|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
gcatccaaagccgcatccaaagccactcgg	Protospacer
* *********** ****.******  *

5. spacer 1.3|2104234|30|NZ_LS483372|CRT matches to MK376351 (Pseudomonas sp. strain ANT_H62 plasmid pA62H2, complete sequence) position: , mismatch: 8, identity: 0.733

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
ttggtcaaagccgaaaccgaagccagacca	Protospacer
  . .********.* *************

6. spacer 1.1|2104150|30|NZ_LS483372|CRT matches to KJ578766 (Propionibacterium phage PHL067M09, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccgtc	Protospacer
   ****************** **.   .*

7. spacer 1.1|2104150|30|NZ_LS483372|CRT matches to NC_027380 (Propionibacterium phage PHL067M01, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccgtc	Protospacer
   ****************** **.   .*

8. spacer 1.1|2104150|30|NZ_LS483372|CRT matches to KJ578773 (Propionibacterium phage PHL092M00, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccggc	Protospacer
   ****************** **.    *

9. spacer 1.1|2104150|30|NZ_LS483372|CRT matches to JX570709 (Propionibacterium phage PHL067M10, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccgtc	Protospacer
   ****************** **.   .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

325549 : 390648

Pseudomonas_phage(61.11%)

portal,plate,integrase,terminase,capsid,tail,lysis,protease,head

attL 361218:361270|attR 395470:395522

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053255747.1\|325549_326032_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_053255748.1\|326045_326825_-	EAL domain-containing protein	NA	NA	NA	NA
WP_053255749.1\|326942_327350_+	RNA-binding protein	NA	NA	NA	NA
WP_053255750.1\|327438_328242_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_053255751.1\|328345_329248_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_053255752.1\|329427_330969_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	9.5e-125	47.2
WP_053255753.1\|331025_331877_-	DMT family transporter	NA	NA	NA	NA
WP_053253799.1\|332049_332406_-	DUF1493 family protein	NA	NA	NA	NA
WP_053253800.1\|333216_333540_-	hypothetical protein	NA	NA	NA	NA
WP_053253801.1\|333710_334310_-	putative adenosine monophosphate-protein transferase Fic	NA	NA	NA	NA
WP_096236773.1\|334309_334480_-	DUF2559 family protein	NA	NA	NA	NA
WP_053253802.1\|334655_335831_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_053253803.1\|336116_338054_+	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	5.8e-55	38.8
WP_053253804.1\|338077_338509_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_053253805.1\|338657_339137_-	hypothetical protein	NA	NA	NA	NA
WP_053253806.1\|339389_341738_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_053253807.1\|341734_342574_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_053253808.1\|342671_343559_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_053253809.1\|343687_344128_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_053253810.1\|344237_344900_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_053253811.1\|344987_345554_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_053253812.1\|345550_346387_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_053253813.1\|346456_346912_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_053253814.1\|346938_348324_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_053253815.1\|348320_350129_-	sensor histidine kinase	NA	NA	NA	NA
WP_053253816.1\|350194_350740_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.3e-54	58.7
WP_053253817.1\|350783_351866_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.6e-97	52.1
WP_053253818.1\|352447_353554_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	4.6e-105	51.4
WP_053253819.1\|353788_354001_+	hypothetical protein	NA	NA	NA	NA
WP_053253820.1\|354445_355732_+	OprD family porin	NA	NA	NA	NA
WP_053253821.1\|356071_356293_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_053253822.1\|356289_356991_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	5.8e-05	29.6
WP_053253823.1\|357720_358692_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	6.6e-124	68.6
WP_162232013.1\|359565_360624_-	hypothetical protein	NA	NA	NA	NA
361218:361270	attL	NA	NA	NA	NA
WP_141125156.1\|361487_362093_-	hypothetical protein	NA	NA	NA	NA
WP_053253825.1\|362089_362629_-	ImmA/IrrE family metallo-endopeptidase	Q332A2	Clostridium_botulinum_C_phage	1.9e-08	37.0
WP_053253826.1\|362804_363953_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	2.8e-73	41.0
WP_053253828.1\|364285_366997_-	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	3.6e-284	53.7
WP_053253829.1\|366996_367230_-	hypothetical protein	NA	NA	NA	NA
WP_053253830.1\|367303_367669_-	hypothetical protein	NA	NA	NA	NA
WP_053253831.1\|367665_368175_-	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	4.3e-42	54.3
WP_053253832.1\|368174_368375_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	1.1e-12	58.7
WP_081006314.1\|368462_368831_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	2.8e-22	50.5
WP_053253834.1\|368932_369118_+	hypothetical protein	NA	NA	NA	NA
WP_053253835.1\|369196_369445_-	ogr/Delta-like zinc finger family protein	R9TNQ2	Vibrio_phage	1.6e-13	45.0
WP_081006316.1\|369501_370404_-\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	1.3e-102	77.5
WP_053253836.1\|370300_372334_-\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	8.9e-264	68.1
WP_053253837.1\|372496_373414_+\|capsid	GPO family capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	1.4e-59	46.7
WP_053253838.1\|373415_374435_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	4.6e-128	69.7
WP_053253839.1\|374431_375157_+\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	3.1e-70	62.1
WP_053253840.1\|375254_375725_+\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	1.9e-36	55.1
WP_053253841.1\|375721_376171_+\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	2.1e-48	66.7
WP_053253842.1\|376160_376841_+	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	4.4e-66	62.7
WP_053253843.1\|376852_377980_+	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	2.7e-137	66.9
WP_053253844.1\|377986_378436_+	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	1.5e-59	73.6
WP_053253845.1\|378435_378654_+	TraR/DksA family transcriptional regulator	A0A0U4IIN4	Pseudomonas_phage	1.1e-13	60.0
WP_053253846.1\|378650_378857_+	hypothetical protein	NA	NA	NA	NA
WP_053253847.1\|378853_379387_+	lysozyme	NA	NA	NA	NA
WP_053253848.1\|379386_379845_+\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	2.2e-21	45.0
WP_053253849.1\|379877_380165_+\|tail	putative phage tail assembly chaperone	A0A0U4B0P2	Pseudomonas_phage	4.5e-28	66.3
WP_019360422.1\|380188_380329_+	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	1.6e-15	82.6
WP_053253850.1\|380335_382696_+\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	9.4e-132	45.5
WP_053253851.1\|382692_383010_+	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	1.1e-35	79.4
WP_053253852.1\|383006_384179_+\|plate	baseplate J/gp47 family protein	A0A0U4JJ14	Pseudomonas_phage	6.7e-163	73.5
WP_053253853.1\|384175_384700_+\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	8.9e-83	82.2
WP_053253854.1\|384708_387048_+\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	2.9e-117	58.4
WP_096236973.1\|387047_387542_+	hypothetical protein	NA	NA	NA	NA
WP_053253856.1\|387531_388461_+	hypothetical protein	NA	NA	NA	NA
WP_053253857.1\|388457_389003_+	hypothetical protein	A0A0U4J942	Pseudomonas_phage	1.0e-57	68.3
WP_053253858.1\|388999_389704_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	6.6e-41	41.8
WP_053253859.1\|389676_390648_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	4.6e-125	68.9
395470:395522	attR	NA	NA	NA	NA

DBSCAN-SWA_2

933296 : 983403

Ralstonia_phage(33.33%)

transposase,tRNA,integrase

attL 932620:932637|attR 980672:980689

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
932620:932637	attL	NA	NA	NA	NA
WP_053254291.1\|933296_936128_+\|tRNA	isoleucine--tRNA ligase	A0A2K9V7W4	Bandra_megavirus	2.8e-82	26.7
WP_053254292.1\|936120_936633_+	signal peptidase II	NA	NA	NA	NA
WP_053254293.1\|936625_937078_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_053254294.1\|937246_938194_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_053254295.1\|938147_938729_-	GspH/FimT family protein	NA	NA	NA	NA
WP_053254296.1\|938933_939419_+	type IV pilus modification protein PilV	NA	NA	NA	NA
WP_053254297.1\|939415_940123_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_053254298.1\|940130_940661_+	pilus assembly protein PilX	NA	NA	NA	NA
WP_053254299.1\|940672_941074_+	type IV pilin protein	NA	NA	NA	NA
WP_053255337.1\|941136_942246_+	glycine oxidase ThiO	NA	NA	NA	NA
WP_053254300.1\|942232_942466_-	hypothetical protein	NA	NA	NA	NA
WP_053254301.1\|942591_943617_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_053254302.1\|943766_944729_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_053254303.1\|944725_945451_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_053254304.1\|945598_948163_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.9e-127	35.2
WP_053254305.1\|949144_950464_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_096236790.1\|950460_952347_-	TraI domain-containing protein	NA	NA	NA	NA
WP_141125169.1\|952748_953087_+	hypothetical protein	NA	NA	NA	NA
WP_053254307.1\|953115_954627_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_053254308.1\|954623_954992_-	hypothetical protein	NA	NA	NA	NA
WP_053254309.1\|955005_956364_-	integrating conjugative element protein	NA	NA	NA	NA
WP_053254310.1\|956386_957328_-	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_081006325.1\|957324_957753_-	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_053254311.1\|957979_958642_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_053254312.1\|958800_958983_+	hypothetical protein	NA	NA	NA	NA
WP_096236793.1\|961013_962163_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.5e-98	63.7
WP_096236796.1\|962156_962432_+	hypothetical protein	NA	NA	NA	NA
WP_084375872.1\|962688_963009_-	hypothetical protein	A0A2H4J9H6	uncultured_Caudovirales_phage	2.3e-09	41.1
WP_084375873.1\|963176_964490_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_141125174.1\|964553_965990_-	hypothetical protein	NA	NA	NA	NA
WP_084375875.1\|966410_967133_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_157750146.1\|967401_969732_+	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_084375877.1\|969721_970285_+	hypothetical protein	NA	NA	NA	NA
WP_084375878.1\|970437_971112_+	DUF1120 domain-containing protein	NA	NA	NA	NA
WP_096236799.1\|971781_972762_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	6.1e-93	56.7
WP_096236801.1\|973290_974271_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	6.1e-93	56.7
WP_084375884.1\|974543_975233_+	response regulator transcription factor	NA	NA	NA	NA
WP_167422737.1\|975265_977632_+	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	1.2e-41	30.8
WP_084375882.1\|977752_978964_+	EAL domain-containing protein	NA	NA	NA	NA
WP_084375881.1\|979101_979539_+	hypothetical protein	NA	NA	NA	NA
WP_096236979.1\|979694_980093_+	DUF4398 domain-containing protein	NA	NA	NA	NA
WP_084375879.1\|980909_982358_+	catalase	A0A2K9L0T1	Tupanvirus	2.7e-105	40.9
980672:980689	attR	NA	NA	NA	NA
WP_096236804.1\|982422_983403_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	2.0e-91	56.0

DBSCAN-SWA_3

1462185 : 1500201

uncultured_Caudovirales_phage(31.58%)

holin,plate,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053254643.1\|1462185_1462656_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_053254644.1\|1462800_1463910_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.4e-21	38.4
WP_053254645.1\|1463906_1464827_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	2.1e-18	27.0
WP_053254646.1\|1465261_1467370_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
WP_053254647.1\|1467454_1467793_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_053254648.1\|1467874_1468345_-	bacterioferritin	NA	NA	NA	NA
WP_010564137.1\|1468546_1468765_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_003172097.1\|1469009_1469612_+	peroxiredoxin	NA	NA	NA	NA
WP_017137041.1\|1469676_1470348_-	ribonuclease T	NA	NA	NA	NA
WP_027604589.1\|1470344_1471391_-	dihydroorotase	NA	NA	NA	NA
WP_053254649.1\|1471547_1472456_+	OmpA family protein	NA	NA	NA	NA
WP_003208700.1\|1472598_1473816_+	argininosuccinate synthase	NA	NA	NA	NA
WP_053254650.1\|1474454_1475087_+	response regulator transcription factor	NA	NA	NA	NA
WP_053254651.1\|1475172_1475355_-	hypothetical protein	NA	NA	NA	NA
WP_053254652.1\|1475462_1476101_-	endonuclease III	NA	NA	NA	NA
WP_053254653.1\|1476203_1477367_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_053254654.1\|1477582_1479634_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_053254655.1\|1479807_1480902_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_053254656.1\|1481398_1481722_-	ferredoxin family protein	NA	NA	NA	NA
WP_053254657.1\|1481864_1484456_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	6.7e-30	22.0
WP_053254658.1\|1484752_1485034_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_167422741.1\|1485340_1485508_-	hypothetical protein	NA	NA	NA	NA
WP_053255347.1\|1485507_1486230_-	zeta toxin family protein	NA	NA	NA	NA
WP_073637233.1\|1486419_1487154_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	6.3e-119	87.7
WP_141125153.1\|1487159_1487462_+	hypothetical protein	NA	NA	NA	NA
WP_053254660.1\|1487747_1488086_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.1e-44	86.4
WP_053254661.1\|1488109_1488622_+	hypothetical protein	NA	NA	NA	NA
WP_053254662.1\|1488625_1489237_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	7.8e-46	54.5
WP_053254663.1\|1489246_1489579_+	hypothetical protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.8e-36	68.2
WP_053254664.1\|1489575_1490571_+\|plate	baseplate J/gp47 family protein	A0A2H4JC04	uncultured_Caudovirales_phage	4.6e-112	63.8
WP_053254665.1\|1490567_1491296_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.0e-36	48.0
WP_053254666.1\|1491292_1491826_+	hypothetical protein	A2I2X8	Vibrio_virus	8.5e-49	61.4
WP_053254667.1\|1491853_1492474_+	hypothetical protein	NA	NA	NA	NA
WP_073637230.1\|1492485_1492743_+\|tail	phage tail assembly chaperone	A0A1L5C071	Aquamicrobium_phage	7.3e-06	48.5
WP_167422742.1\|1492827_1493001_+	hypothetical protein	NA	NA	NA	NA
WP_053254668.1\|1493003_1494170_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	3.6e-124	57.0
WP_053254669.1\|1494169_1494676_+\|tail	phage major tail tube protein	Q6R4W3	Vibrio_virus	1.4e-21	34.5
WP_053254670.1\|1494844_1495417_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	2.1e-29	39.8
WP_053254671.1\|1495544_1497404_+	hypothetical protein	NA	NA	NA	NA
WP_053254672.1\|1497403_1497787_+\|tail	phage tail protein	B0ZSH2	Halomonas_phage	2.3e-35	59.1
WP_005785409.1\|1497779_1497992_+\|tail	tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	2.4e-18	62.9
WP_053254673.1\|1498001_1499012_+\|tail	phage tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	3.4e-99	55.1
WP_053254674.1\|1499034_1499592_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	6.6e-76	74.7
WP_053254675.1\|1499700_1500201_+	CinA family protein	B5TK85	Pseudomonas_phage	4.8e-70	83.1

DBSCAN-SWA_4

1605330 : 1610318

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053254757.1\|1605330_1606080_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.5e-64	50.2
WP_003189211.1\|1606079_1606757_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
WP_069552040.1\|1606967_1607804_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
WP_053254759.1\|1607910_1608918_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|1609152_1609362_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_017137166.1\|1609751_1610318_+	dCTP deaminase	S5VM63	Pseudomonas_phage	8.1e-74	73.3

DBSCAN-SWA_5

1781097 : 1828667

Pseudomonas_phage(29.17%)

plate,integrase,terminase,tail,head

attL 1780914:1780973|attR 1829261:1829324

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1780914:1780973	attL	NA	NA	NA	NA
WP_053254906.1\|1781097_1782075_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	6.7e-116	64.9
WP_053254907.1\|1782083_1782335_-	hypothetical protein	NA	NA	NA	NA
WP_053254908.1\|1782501_1782810_-	hypothetical protein	NA	NA	NA	NA
WP_053254909.1\|1782952_1783330_-	hypothetical protein	NA	NA	NA	NA
WP_053254910.1\|1783326_1783671_-	hypothetical protein	NA	NA	NA	NA
WP_053254911.1\|1783667_1783871_-	hypothetical protein	NA	NA	NA	NA
WP_053254912.1\|1783857_1784064_-	hypothetical protein	NA	NA	NA	NA
WP_155512280.1\|1784318_1784492_-	hypothetical protein	NA	NA	NA	NA
WP_053254913.1\|1784667_1785306_-	hypothetical protein	A0A0S4L050	Pseudomonas_phage	2.2e-11	75.0
WP_081006333.1\|1785518_1786040_-	HNH endonuclease	A8HNZ9	Thalassomonas_phage	7.8e-31	42.6
WP_053254914.1\|1786011_1786380_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	3.1e-34	88.1
WP_053254915.1\|1786382_1786763_-	hypothetical protein	NA	NA	NA	NA
WP_053254916.1\|1786768_1787392_-	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	2.7e-22	36.7
WP_053254917.1\|1787372_1787894_-	hypothetical protein	A0A0F7L7F5	uncultured_marine_virus	4.0e-11	28.0
WP_081006334.1\|1787959_1788208_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_053254918.1\|1788331_1788796_-	hypothetical protein	A0A291I9C8	Pseudomonas_phage	1.2e-14	43.5
WP_167422744.1\|1788792_1788930_-	hypothetical protein	A0A1B0VMD4	Pseudomonas_phage	3.1e-19	95.6
WP_053254919.1\|1788926_1789166_-	hypothetical protein	NA	NA	NA	NA
WP_053254920.1\|1789162_1789387_-	hypothetical protein	NA	NA	NA	NA
WP_053254921.1\|1789383_1789659_-	hypothetical protein	A0A2H4J6R2	uncultured_Caudovirales_phage	2.7e-14	50.0
WP_053254922.1\|1789678_1789921_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_053254923.1\|1789942_1790155_-	hypothetical protein	NA	NA	NA	NA
WP_053254924.1\|1790195_1790729_-	HNH endonuclease	A0A2I7S010	Vibrio_phage	4.4e-29	40.2
WP_053254925.1\|1791364_1791571_-	hypothetical protein	NA	NA	NA	NA
WP_053254926.1\|1791797_1792049_-	hypothetical protein	NA	NA	NA	NA
WP_053254927.1\|1792552_1793245_-	hypothetical protein	W6MVG5	Pseudomonas_phage	3.2e-72	62.0
WP_010568092.1\|1793368_1793581_+	helix-turn-helix domain-containing protein	J7I423	Pseudomonas_phage	1.6e-11	59.4
WP_053254928.1\|1793616_1793811_+	hypothetical protein	B5WZX7	Pseudomonas_phage	5.5e-06	53.7
WP_053254929.1\|1793830_1794076_+	hypothetical protein	NA	NA	NA	NA
WP_053254930.1\|1794163_1795030_+	Bro-N domain-containing protein	A0A2H4J111	uncultured_Caudovirales_phage	6.7e-51	63.6
WP_053254931.1\|1795936_1796713_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	2.0e-99	74.5
WP_053254932.1\|1796709_1796928_+	TraR/DksA C4-type zinc finger protein	A0A1L5C2A6	Pseudoalteromonas_phage	1.5e-07	43.1
WP_053254933.1\|1796893_1797388_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	2.8e-62	72.1
WP_053254934.1\|1797384_1797798_+	HNH endonuclease	A0A0U4IIE4	Pseudomonas_phage	1.3e-25	65.4
WP_053254935.1\|1797794_1798379_+	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	1.8e-60	60.5
WP_053254936.1\|1798375_1798621_+	hypothetical protein	NA	NA	NA	NA
WP_053254938.1\|1798814_1799159_+	DUF4406 domain-containing protein	G3KAZ6	Pseudomonas_phage	8.8e-31	61.5
WP_053254939.1\|1799155_1799593_+	hypothetical protein	A0A291LAS9	Bordetella_phage	7.0e-65	84.7
WP_053254940.1\|1799589_1800732_+	oxidoreductase	G1CST0	Cronobacter_virus	2.5e-74	38.9
WP_053254941.1\|1800728_1801274_+	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	1.4e-59	64.8
WP_053254942.1\|1801657_1801984_+	hypothetical protein	A0A088FVG2	Escherichia_phage	1.2e-21	50.0
WP_053254943.1\|1801980_1802316_+	hypothetical protein	NA	NA	NA	NA
WP_053254944.1\|1802312_1802579_+	hypothetical protein	NA	NA	NA	NA
WP_167422745.1\|1802639_1802804_+	hypothetical protein	NA	NA	NA	NA
WP_053254945.1\|1802856_1804263_+	DUF1073 domain-containing protein	L0ASI3	Klebsiella_phage	1.5e-105	47.5
WP_053255351.1\|1804330_1805119_+\|head	phage head morphogenesis protein	A0A2I7QN95	Vibrio_phage	3.9e-58	45.9
WP_167422746.1\|1805195_1805549_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.4e-28	64.2
WP_167422747.1\|1805530_1806226_+	DUF2213 domain-containing protein	N0DP48	Edwardsiella_phage	1.2e-23	42.6
WP_053254947.1\|1806225_1806735_+	hypothetical protein	NA	NA	NA	NA
WP_053254948.1\|1806747_1807725_+	DUF2184 domain-containing protein	A0A2I7QN78	Vibrio_phage	6.0e-32	31.9
WP_053254949.1\|1807734_1808079_+	hypothetical protein	NA	NA	NA	NA
WP_155512281.1\|1808136_1808310_+	hypothetical protein	NA	NA	NA	NA
WP_053254950.1\|1808335_1808773_+	DUF4054 domain-containing protein	B5AX60	Iodobacteriophage	1.7e-10	39.6
WP_053254951.1\|1808769_1809390_+	hypothetical protein	A0A2I7QSG8	Vibrio_phage	5.8e-41	46.5
WP_053254952.1\|1809389_1809809_+	hypothetical protein	A0A1I9SEU3	Klebsiella_phage	6.5e-12	35.4
WP_053254953.1\|1809801_1810359_+	hypothetical protein	A0A2I7R3Y3	Vibrio_phage	3.9e-12	28.6
WP_053254954.1\|1810342_1811473_+	DUF3383 family protein	N0DP63	Edwardsiella_phage	4.6e-84	45.6
WP_084375806.1\|1811486_1811891_+	hypothetical protein	A0A291LBH7	Klebsiella_phage	3.3e-21	41.9
WP_053254956.1\|1811887_1812334_+	hypothetical protein	NA	NA	NA	NA
WP_141125144.1\|1812507_1813254_-	hypothetical protein	NA	NA	NA	NA
WP_162232022.1\|1813512_1814850_+	hypothetical protein	A0A089X2P4	Vibrio_phage	3.9e-18	26.5
WP_053254959.1\|1814846_1815467_+	hypothetical protein	N0DQQ6	Edwardsiella_phage	5.5e-23	35.1
WP_053254961.1\|1815758_1816709_+	hypothetical protein	L7TRC2	Rhizobium_phage	1.7e-07	23.2
WP_053254962.1\|1816705_1817380_+	hypothetical protein	B5AX78	Iodobacteriophage	1.1e-32	38.0
WP_053254963.1\|1817376_1817742_+	hypothetical protein	A0A0P0IVU6	Acinetobacter_phage	1.0e-13	45.5
WP_053254964.1\|1817741_1819001_+\|plate	baseplate J/gp47 family protein	H9C1B3	Pectobacterium_phage	1.0e-63	36.4
WP_053254965.1\|1818997_1819657_+	DUF2612 domain-containing protein	B5AX81	Iodobacteriophage	6.4e-22	34.5
WP_096236994.1\|1819860_1820472_+\|tail	tail fiber protein	A0A1W6JT73	Escherichia_phage	5.6e-20	41.4
WP_053254968.1\|1820689_1821139_+\|terminase	terminase small subunit	E5AGA2	Erwinia_phage	6.1e-32	54.3
WP_053254969.1\|1821135_1822746_+\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	2.4e-147	47.4
WP_053254970.1\|1822822_1825270_+	hypothetical protein	A0A249XTZ8	Mycobacterium_phage	1.4e-08	39.5
WP_141125145.1\|1825657_1827361_+	hypothetical protein	NA	NA	NA	NA
WP_053254972.1\|1827639_1828173_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	2.4e-75	79.1
WP_053254973.1\|1828169_1828667_+	DUF2514 domain-containing protein	A0A2D1GNE2	Pseudomonas_phage	1.8e-53	85.0
1829261:1829324	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3917441 : 3975752

Pseudomonas_phage(46.15%)

integrase,holin,capsid,transposase,tail,lysis

attL 3919940:3919999|attR 3973453:3973567

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053256710.1\|3917441_3917774_-\|holin	phage holin, lambda family	A0A2H4J1U5	uncultured_Caudovirales_phage	1.5e-51	90.9
WP_053256712.1\|3918608_3918806_-	hypothetical protein	NA	NA	NA	NA
WP_053256713.1\|3918938_3919172_-	hypothetical protein	NA	NA	NA	NA
3919940:3919999	attL	NA	NA	NA	NA
WP_053256714.1\|3920267_3921893_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-62	42.5
WP_053256715.1\|3922594_3922804_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	3.4e-09	50.8
WP_053256716.1\|3922883_3923237_+	hypothetical protein	A0A2D1GNN8	Pseudomonas_phage	9.7e-33	62.7
WP_053256717.1\|3923217_3923745_-\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.5e-58	73.0
WP_053256718.1\|3923741_3924275_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	4.5e-74	77.4
WP_053256719.1\|3924332_3925259_-\|tail	tail fiber domain-containing protein	A0A0C4K5Y2	Synechococcus_phage	2.6e-08	35.7
WP_053256720.1\|3925339_3925978_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	3.2e-42	42.7
WP_053256722.1\|3926324_3930050_-\|tail	phage tail protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	72.1
WP_053256723.1\|3930109_3930703_-\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	7.4e-102	97.5
WP_053256724.1\|3930757_3931180_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	7.2e-59	84.3
WP_053256725.1\|3931208_3931589_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_053256726.1\|3931770_3932484_+	hypothetical protein	NA	NA	NA	NA
WP_053256727.1\|3932560_3933310_-	C40 family peptidase	A0A1B0VP68	Pseudomonas_phage	4.4e-136	87.1
WP_053256728.1\|3933312_3934065_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	2.4e-137	91.6
WP_053256729.1\|3934076_3934415_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	8.9e-52	82.1
WP_053256731.1\|3937515_3937788_-	DUF1799 domain-containing protein	A0A1B0VMG9	Pseudomonas_phage	1.0e-21	58.1
WP_053256732.1\|3937835_3938216_-\|tail	phage tail assembly chaperone	A0A2H4IYQ5	uncultured_Caudovirales_phage	4.8e-30	52.0
WP_053256733.1\|3938219_3938876_-\|tail	phage tail protein	A0A2H4J6K6	uncultured_Caudovirales_phage	6.0e-52	47.7
WP_053256734.1\|3938948_3939365_-	DUF4128 domain-containing protein	A0A1B0VMI0	Pseudomonas_phage	2.1e-63	87.7
WP_053256735.1\|3939361_3939946_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	4.5e-51	52.6
WP_053256736.1\|3939947_3940340_-	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	1.5e-42	66.2
WP_053256737.1\|3940342_3940720_-	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	1.4e-42	75.2
WP_053256738.1\|3940730_3941036_-	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	1.3e-22	45.5
WP_053256739.1\|3941091_3942069_-	hypothetical protein	A0A2H4JIE6	uncultured_Caudovirales_phage	1.8e-153	82.2
WP_053256791.1\|3942072_3942810_-	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	6.4e-79	65.0
WP_053256740.1\|3942899_3943496_-	hypothetical protein	NA	NA	NA	NA
WP_053256741.1\|3943499_3943991_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	2.2e-22	36.4
WP_053256742.1\|3943999_3945046_-\|capsid	minor capsid protein	A0A2H4J3G9	uncultured_Caudovirales_phage	1.7e-133	71.0
WP_053256743.1\|3945029_3946490_-	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	8.2e-235	82.2
WP_053256744.1\|3946489_3947827_-	hypothetical protein	A0A2H4GY89	Pseudomonas_phage	1.9e-177	70.3
WP_053256746.1\|3948371_3948995_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	2.4e-103	86.5
WP_053256747.1\|3949069_3949492_+	hypothetical protein	NA	NA	NA	NA
WP_053256748.1\|3949541_3949874_-\|holin	phage holin, lambda family	A0A2H4J1U5	uncultured_Caudovirales_phage	7.1e-54	93.6
WP_053256749.1\|3950236_3951199_-	hypothetical protein	NA	NA	NA	NA
WP_053256750.1\|3951210_3951396_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	3.2e-11	84.2
WP_053256751.1\|3951828_3952374_-	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	3.8e-60	64.2
WP_053256752.1\|3952370_3952949_-	recombination protein NinG	A0A059VA66	Pseudomonas_phage	2.3e-76	72.0
WP_053256753.1\|3952945_3953416_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	3.3e-52	60.3
WP_053256754.1\|3953415_3954222_-	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	5.5e-92	62.9
WP_081006381.1\|3954211_3955057_-	replication protein	W6MYB0	Pseudomonas_phage	1.1e-39	40.1
WP_053256756.1\|3955122_3955737_-	hypothetical protein	NA	NA	NA	NA
WP_053256757.1\|3955791_3956007_-	helix-turn-helix domain-containing protein	A0A125RNS7	Pseudomonas_phage	3.2e-23	73.2
WP_053256758.1\|3956094_3956763_+	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	1.3e-46	47.1
WP_053256759.1\|3956762_3957002_+	hypothetical protein	NA	NA	NA	NA
WP_053256760.1\|3957156_3958137_+	hypothetical protein	A9YX09	Burkholderia_phage	6.9e-113	63.0
WP_053256762.1\|3958714_3959041_+	DUF2388 domain-containing protein	NA	NA	NA	NA
WP_141125149.1\|3959203_3959671_+	hypothetical protein	NA	NA	NA	NA
WP_053256763.1\|3959887_3960139_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_053256764.1\|3960554_3960773_+	hypothetical protein	NA	NA	NA	NA
WP_053256765.1\|3960837_3961140_-	hypothetical protein	NA	NA	NA	NA
WP_053256766.1\|3961524_3961722_+	hypothetical protein	A0A1B0VN94	Pseudomonas_phage	1.3e-26	86.7
WP_053256767.1\|3962018_3962285_+	hypothetical protein	A0A2H4J404	uncultured_Caudovirales_phage	4.1e-12	49.4
WP_053256768.1\|3962262_3962493_+	hypothetical protein	NA	NA	NA	NA
WP_053256769.1\|3962489_3962717_+	hypothetical protein	NA	NA	NA	NA
WP_053256770.1\|3962820_3963939_+	hypothetical protein	NA	NA	NA	NA
WP_053256771.1\|3963994_3964975_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	1.8e-65	54.4
WP_053256772.1\|3964971_3965640_+	YqaJ viral recombinase family protein	F8TUK8	EBPR_podovirus	8.5e-38	43.4
WP_053256773.1\|3965642_3966233_+	hypothetical protein	A0A1B0VMB1	Pseudomonas_phage	2.9e-50	53.8
WP_053256774.1\|3966302_3966551_+	hypothetical protein	NA	NA	NA	NA
WP_053256775.1\|3966649_3966880_-	hypothetical protein	NA	NA	NA	NA
WP_053256776.1\|3966934_3967942_+	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	3.2e-121	63.3
WP_053256777.1\|3967985_3968198_-	hypothetical protein	NA	NA	NA	NA
WP_053256778.1\|3968343_3968625_-	hypothetical protein	NA	NA	NA	NA
WP_053256779.1\|3968700_3969480_+	DUF2786 domain-containing protein	A0A2H4JCP9	uncultured_Caudovirales_phage	4.6e-11	30.0
WP_053256780.1\|3969520_3969778_-	hypothetical protein	NA	NA	NA	NA
WP_167422783.1\|3969931_3970429_+	DUF4406 domain-containing protein	G3KAZ6	Pseudomonas_phage	5.0e-27	58.5
WP_141125148.1\|3970381_3970954_-	hypothetical protein	NA	NA	NA	NA
WP_053256782.1\|3971328_3971712_+	hypothetical protein	Q8W6R0	Burkholderia_virus	6.2e-25	48.7
WP_053256783.1\|3971788_3971974_+	hypothetical protein	NA	NA	NA	NA
WP_053256784.1\|3972094_3972337_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	6.7e-09	41.8
WP_053256785.1\|3972338_3973388_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	6.1e-107	56.1
WP_053256786.1\|3973747_3974419_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.0e-107	93.7
3973453:3973567	attR	NA	NA	NA	NA
WP_167422752.1\|3974530_3975752_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.6e-21	40.6

DBSCAN-SWA_7

3992532 : 3998608

uncultured_Caudovirales_phage(83.33%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053256812.1\|3992532_3993357_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.2e-104	71.6
WP_053256813.1\|3993658_3994261_+	YIP1 family protein	NA	NA	NA	NA
WP_053257992.1\|3994388_3994883_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_053256814.1\|3994916_3996098_-	CoA transferase	NA	NA	NA	NA
WP_053256815.1\|3996255_3996648_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.1e-56	83.1
WP_053256816.1\|3996649_3997000_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.8e-40	70.0
WP_053256817.1\|3996999_3997278_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.6e-25	58.6
WP_053256818.1\|3997274_3997610_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.8e-44	76.6
WP_053256819.1\|3997606_3998608_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.6e-171	87.5

DBSCAN-SWA_8

5941699 : 5993262

Tupanvirus(20.0%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053258366.1\|5941699_5942215_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_053258367.1\|5942386_5943265_+	acyltransferase	NA	NA	NA	NA
WP_053258368.1\|5943720_5944290_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_053258369.1\|5944441_5945068_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_053258370.1\|5945064_5945742_+	anti-sigma factor	NA	NA	NA	NA
WP_053258371.1\|5946677_5946926_+	hypothetical protein	NA	NA	NA	NA
WP_048722231.1\|5946979_5948179_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	29.7
WP_032883972.1\|5948374_5949232_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_053258372.1\|5949355_5949988_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_053258373.1\|5950110_5953128_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_027605979.1\|5953124_5953427_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_010207084.1\|5953442_5954693_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_053258374.1\|5954715_5955969_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.5e-99	52.5
WP_053258375.1\|5956205_5956934_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_053258376.1\|5957024_5958065_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_053258377.1\|5958259_5958460_+	hypothetical protein	NA	NA	NA	NA
WP_053258378.1\|5958581_5959115_+	hypothetical protein	NA	NA	NA	NA
WP_053258379.1\|5959341_5960442_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_053258380.1\|5960724_5962020_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_053258381.1\|5962823_5963594_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_053258382.1\|5963604_5964825_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_053258384.1\|5966939_5969000_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_016972865.1\|5969015_5969546_-	hypothetical protein	NA	NA	NA	NA
WP_053258385.1\|5969623_5970601_-	dipeptidase	NA	NA	NA	NA
WP_053258386.1\|5970819_5971221_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_053258387.1\|5971262_5971745_+	hypothetical protein	NA	NA	NA	NA
WP_053258388.1\|5971786_5972203_+	DUF3010 family protein	NA	NA	NA	NA
WP_053258389.1\|5972326_5973505_-	hypothetical protein	NA	NA	NA	NA
WP_053258390.1\|5973573_5974518_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_053258391.1\|5974711_5975656_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_053258392.1\|5975734_5976622_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_053258393.1\|5976799_5977765_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_053258394.1\|5977891_5978371_+	thioesterase family protein	NA	NA	NA	NA
WP_053258395.1\|5978380_5979541_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_053258396.1\|5979920_5980184_+	hypothetical protein	NA	NA	NA	NA
WP_053258397.1\|5980297_5981401_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_053258400.1\|5983701_5984649_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_053258401.1\|5984716_5985562_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_053258402.1\|5985558_5986737_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-26	37.6
WP_053258403.1\|5986920_5988912_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	3.1e-19	28.5
WP_010207128.1\|5989245_5989839_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_053258404.1\|5989948_5991421_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_053258405.1\|5991558_5993262_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.0e-50	29.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483372

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection