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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LS483365 Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1 10 crisprs cas3,DEDDh,DinG,csa3,WYL 10 3 9 0

Results visualization

1. NZ_LS483365
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_1 379411-379511 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_2 614698-614790 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_3 677958-678056 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_4 820187-820268 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_5 869042-869324 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_6 1002726-1002813 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_7 1785107-1785317 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_8 1985505-1985583 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_9 2220307-2220396 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483365_10 2344234-2344427 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LS483365_4 4.1|820211|34|NZ_LS483365|CRISPRCasFinder 820211-820244 34 NZ_LS483365.1 1295379-1295412 0 1.0
NZ_LS483365_4 4.1|820211|34|NZ_LS483365|CRISPRCasFinder 820211-820244 34 NZ_LS483365.1 1383820-1383853 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 114835-114854 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 258033-258052 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 340929-340948 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 771466-771485 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 771521-771540 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 777126-777145 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 777184-777203 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 777242-777261 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 820265-820284 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 888723-888742 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1012709-1012728 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1295280-1295299 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1383933-1383952 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1606328-1606347 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1785031-1785050 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1986935-1986954 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 2536078-2536097 0 1.0
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 2787024-2787043 0 1.0
NZ_LS483365_10 10.2|2344313|36|NZ_LS483365|CRT 2344313-2344348 36 NZ_LS483365.1 1087171-1087206 0 1.0
NZ_LS483365_5 5.1|869072|26|NZ_LS483365|CRT 869072-869097 26 NZ_LS483365.1 776911-776936 1 0.962
NZ_LS483365_5 5.1|869072|26|NZ_LS483365|CRT 869072-869097 26 NZ_LS483365.1 869016-869041 1 0.962
NZ_LS483365_5 5.3|869186|26|NZ_LS483365|CRT 869186-869211 26 NZ_LS483365.1 776967-776992 1 0.962
NZ_LS483365_5 5.3|869186|26|NZ_LS483365|CRT 869186-869211 26 NZ_LS483365.1 777023-777048 1 0.962
NZ_LS483365_7 7.1|1785145|21|NZ_LS483365|CRT 1785145-1785165 21 NZ_LS483365.1 1785086-1785106 1 0.952
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 258087-258106 1 0.95
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 784332-784351 1 0.95
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1087175-1087194 1 0.95
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1344606-1344625 1 0.95
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1640294-1640313 1 0.95
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 1996284-1996303 1 0.95
NZ_LS483365_7 7.3|1785262|18|NZ_LS483365|CRT 1785262-1785279 18 NZ_LS483365.1 1785089-1785106 1 0.944
NZ_LS483365_8 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder 1985528-1985560 33 NZ_LS483365.1 776947-776979 1 0.97
NZ_LS483365_8 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder 1985528-1985560 33 NZ_LS483365.1 777003-777035 1 0.97
NZ_LS483365_8 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder 1985528-1985560 33 NZ_LS483365.1 1295334-1295366 1 0.97
NZ_LS483365_8 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder 1985528-1985560 33 NZ_LS483365.1 1606377-1606409 1 0.97
NZ_LS483365_8 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder 1985528-1985560 33 NZ_LS483365.1 2621649-2621681 1 0.97
NZ_LS483365_10 10.2|2344313|36|NZ_LS483365|CRT 2344313-2344348 36 NZ_LS483365.1 1785027-1785062 1 0.972
NZ_LS483365_5 5.1|869072|26|NZ_LS483365|CRT 869072-869097 26 NZ_LS483365.1 740331-740356 2 0.923
NZ_LS483365_5 5.1|869072|26|NZ_LS483365|CRT 869072-869097 26 NZ_LS483365.1 1087213-1087238 2 0.923
NZ_LS483365_5 5.1|869072|26|NZ_LS483365|CRT 869072-869097 26 NZ_LS483365.1 2786924-2786949 2 0.923
NZ_LS483365_5 5.1|869072|26|NZ_LS483365|CRT 869072-869097 26 NZ_LS483365.1 2786980-2787005 2 0.923
NZ_LS483365_5 5.3|869186|26|NZ_LS483365|CRT 869186-869211 26 NZ_LS483365.1 340798-340823 2 0.923
NZ_LS483365_7 7.2|1785204|20|NZ_LS483365|CRT 1785204-1785223 20 NZ_LS483365.1 744931-744950 2 0.9
NZ_LS483365_8 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder 1985528-1985560 33 NZ_LS483365.1 1383866-1383898 2 0.939
NZ_LS483365_10 10.1|2344257|33|NZ_LS483365|CRT 2344257-2344289 33 NZ_LS483365.1 776947-776979 2 0.939
NZ_LS483365_10 10.1|2344257|33|NZ_LS483365|CRT 2344257-2344289 33 NZ_LS483365.1 777003-777035 2 0.939
NZ_LS483365_10 10.1|2344257|33|NZ_LS483365|CRT 2344257-2344289 33 NZ_LS483365.1 1295334-1295366 2 0.939
NZ_LS483365_10 10.1|2344257|33|NZ_LS483365|CRT 2344257-2344289 33 NZ_LS483365.1 1383866-1383898 2 0.939
NZ_LS483365_10 10.1|2344257|33|NZ_LS483365|CRT 2344257-2344289 33 NZ_LS483365.1 2621649-2621681 2 0.939
NZ_LS483365_10 10.2|2344313|36|NZ_LS483365|CRT 2344313-2344348 36 NZ_LS483365.1 1606316-1606351 2 0.944
NZ_LS483365_10 10.2|2344313|36|NZ_LS483365|CRT 2344313-2344348 36 NZ_LS483365.1 1996272-1996307 2 0.944
NZ_LS483365_10 10.3|2344372|33|NZ_LS483365|CRT 2344372-2344404 33 NZ_LS483365.1 776891-776923 2 0.939
NZ_LS483365_10 10.3|2344372|33|NZ_LS483365|CRT 2344372-2344404 33 NZ_LS483365.1 776947-776979 2 0.939
NZ_LS483365_10 10.3|2344372|33|NZ_LS483365|CRT 2344372-2344404 33 NZ_LS483365.1 777003-777035 2 0.939
NZ_LS483365_10 10.3|2344372|33|NZ_LS483365|CRT 2344372-2344404 33 NZ_LS483365.1 1295334-1295366 2 0.939
NZ_LS483365_10 10.3|2344372|33|NZ_LS483365|CRT 2344372-2344404 33 NZ_LS483365.1 2621649-2621681 2 0.939

1. spacer 4.1|820211|34|NZ_LS483365|CRISPRCasFinder matches to position: 1295379-1295412, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 4.1|820211|34|NZ_LS483365|CRISPRCasFinder matches to position: 1383820-1383853, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 114835-114854, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

4. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 258033-258052, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

5. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 340929-340948, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

6. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 771466-771485, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

7. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 771521-771540, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

8. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 777126-777145, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

9. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 777184-777203, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

10. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 777242-777261, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

11. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 820265-820284, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

12. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 888723-888742, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

13. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1012709-1012728, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

14. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1295280-1295299, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

15. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1383933-1383952, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

16. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1606328-1606347, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

17. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1785031-1785050, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

18. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1986935-1986954, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

19. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 2536078-2536097, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

20. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 2787024-2787043, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

21. spacer 10.2|2344313|36|NZ_LS483365|CRT matches to position: 1087171-1087206, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

22. spacer 5.1|869072|26|NZ_LS483365|CRT matches to position: 776911-776936, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*****************.********

23. spacer 5.1|869072|26|NZ_LS483365|CRT matches to position: 869016-869041, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

24. spacer 5.3|869186|26|NZ_LS483365|CRT matches to position: 776967-776992, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

25. spacer 5.3|869186|26|NZ_LS483365|CRT matches to position: 777023-777048, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

26. spacer 7.1|1785145|21|NZ_LS483365|CRT matches to position: 1785086-1785106, mismatch: 1, identity: 0.952

agctggccaatagtcagcttt	CRISPR spacer
agctggccaatagttagcttt	Protospacer
**************.******

27. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 258087-258106, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaaattcgaaaagaaattct	Protospacer
*** ****************

28. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 784332-784351, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaatgaaattct	Protospacer
*********** ********

29. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1087175-1087194, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcaaaaagaaattct	Protospacer
*******.************

30. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1344606-1344625, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gattttcgaaaagaaattct	Protospacer
** *****************

31. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1640294-1640313, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgtaaagaaattct	Protospacer
******** ***********

32. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 1996284-1996303, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaggaaattct	Protospacer
***********.********

33. spacer 7.3|1785262|18|NZ_LS483365|CRT matches to position: 1785089-1785106, mismatch: 1, identity: 0.944

tggccaatagtcagcttt	CRISPR spacer
tggccaatagttagcttt	Protospacer
***********.******

34. spacer 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder matches to position: 776947-776979, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

35. spacer 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder matches to position: 777003-777035, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

36. spacer 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder matches to position: 1295334-1295366, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

37. spacer 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder matches to position: 1606377-1606409, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

38. spacer 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder matches to position: 2621649-2621681, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

39. spacer 10.2|2344313|36|NZ_LS483365|CRT matches to position: 1785027-1785062, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

40. spacer 5.1|869072|26|NZ_LS483365|CRT matches to position: 740331-740356, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

41. spacer 5.1|869072|26|NZ_LS483365|CRT matches to position: 1087213-1087238, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

42. spacer 5.1|869072|26|NZ_LS483365|CRT matches to position: 2786924-2786949, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

43. spacer 5.1|869072|26|NZ_LS483365|CRT matches to position: 2786980-2787005, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

44. spacer 5.3|869186|26|NZ_LS483365|CRT matches to position: 340798-340823, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

45. spacer 7.2|1785204|20|NZ_LS483365|CRT matches to position: 744931-744950, mismatch: 2, identity: 0.9

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcaaaaaggaattct	Protospacer
*******.*****.******

46. spacer 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder matches to position: 1383866-1383898, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

47. spacer 10.1|2344257|33|NZ_LS483365|CRT matches to position: 776947-776979, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

48. spacer 10.1|2344257|33|NZ_LS483365|CRT matches to position: 777003-777035, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

49. spacer 10.1|2344257|33|NZ_LS483365|CRT matches to position: 1295334-1295366, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

50. spacer 10.1|2344257|33|NZ_LS483365|CRT matches to position: 1383866-1383898, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

51. spacer 10.1|2344257|33|NZ_LS483365|CRT matches to position: 2621649-2621681, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

52. spacer 10.2|2344313|36|NZ_LS483365|CRT matches to position: 1606316-1606351, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

53. spacer 10.2|2344313|36|NZ_LS483365|CRT matches to position: 1996272-1996307, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

54. spacer 10.3|2344372|33|NZ_LS483365|CRT matches to position: 776891-776923, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgccagcttctg	Protospacer
*********************.*.*********

55. spacer 10.3|2344372|33|NZ_LS483365|CRT matches to position: 776947-776979, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

56. spacer 10.3|2344372|33|NZ_LS483365|CRT matches to position: 777003-777035, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

57. spacer 10.3|2344372|33|NZ_LS483365|CRT matches to position: 1295334-1295366, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

58. spacer 10.3|2344372|33|NZ_LS483365|CRT matches to position: 2621649-2621681, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LS483365_5 5.4|869242|53|NZ_LS483365|CRT 869242-869294 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_LS483365_5 5.3|869186|26|NZ_LS483365|CRT 869186-869211 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_LS483365_8 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder 1985528-1985560 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 5.4|869242|53|NZ_LS483365|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 5.3|869186|26|NZ_LS483365|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

3. spacer 8.1|1985528|33|NZ_LS483365|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 709022 : 716842 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 728814 : 743545 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 987950 : 996423 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1434934 : 1522814 108 Staphylococcus_phage(56.41%) tRNA,plate,capsid,protease,terminase,head,holin,integrase,portal,tail attL 1471175:1471199|attR 1517207:1517231
DBSCAN-SWA_5 1577938 : 1586250 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1655388 : 1664431 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1790204 : 1871692 77 Staphylococcus_phage(93.44%) tRNA,transposase,protease NA
DBSCAN-SWA_8 1900214 : 1975553 93 Staphylococcus_phage(85.92%) tRNA,plate,capsid,terminase,head,transposase,holin,integrase,portal,tail attL 1927158:1927172|attR 1975895:1975909
DBSCAN-SWA_9 2010962 : 2098278 113 Staphylococcus_phage(91.25%) capsid,protease,terminase,head,holin,integrase,portal,tail attL 2074740:2074756|attR 2100934:2100950
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage