CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483362	Campylobacter jejuni subsp. jejuni strain NCTC11168 chromosome 1	2 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9	0	8	1	0

1. NZ_LS483362

CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483362_1

• CRISPR_ID: NZ_LS483362_1
• CRISPR_location: 1339361-1339440
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LS483362_1

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

spacers of NZ_LS483362_1

>1.1|1339384|34|NZ_LS483362|CRISPRCasFinder
TTTTTTAGCTTTATACTCAGCCTTGCTCATATAA

CRISPR arrays and Neighbor proteins around NZ_LS483362_1

CRISPR arrays

The CRISPR arrays of NZ_LS483362_1

>merge|NZ_LS483362|1|1339361-1339440|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTGCTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_LS483362|1|1|1339361-1339440|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTGCTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483362.1|WP_002858404.1|1348833_1349595_-|NTP-transferase-domain-containing-protein	unknown	unknown	gnl|CDD|224134
NZ_LS483362.1|WP_002780456.1|1334627_1335452_-|enoyl-ACP-reductase-FabI	unknown	unknown	gnl|CDD|181416
NZ_LS483362.1|WP_002780449.1|1338386_1338932_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|223985
NZ_LS483362.1|WP_002857939.1|1341768_1342116_+|holo-ACP-synthase	unknown	unknown	gnl|CDD|223807
NZ_LS483362.1|WP_002780442.1|1341232_1341769_+|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl|CDD|181433
NZ_LS483362.1|WP_010891933.1|1339741_1341130_-|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl|CDD|100091
NZ_LS483362.1|WP_002857981.1|1345084_1346269_-|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl|CDD|226092
NZ_LS483362.1|WP_002857891.1|1346265_1348335_-|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl|CDD|226093
NZ_LS483362.1|WP_002855528.1|1335455_1336127_-|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NZ_LS483362.1|WP_002858455.1|1333130_1334624_-|hydrogenase-small-subunit	unknown	unknown	gnl|CDD|224654
NZ_LS483362.1|WP_002857989.1|1328273_1329641_+|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|176469
NZ_LS483362.1|WP_002779147.1|1331071_1331296_+|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|224830
NZ_LS483362.1|WP_002780440.1|1342116_1342536_-|hypothetical-protein	unknown	unknown	unknown
NZ_LS483362.1|WP_002858238.1|1338959_1339286_+|ribosome-silencing-factor	unknown	unknown	gnl|CDD|223870
NZ_LS483362.1|WP_002780453.1|1337328_1338327_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_LS483362.1|WP_002858462.1|1348331_1348844_-|adenylyl-sulfate-kinase	unknown	unknown	gnl|CDD|235498
NZ_LS483362.1|WP_002865443.1|1331292_1333134_+|ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|223447
NZ_LS483362.1|WP_002858304.1|1343890_1345012_-|membrane-protein	unknown	unknown	unknown
NZ_LS483362.1|WP_010891932.1|1336123_1337326_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_LS483362.1|WP_002780438.1|1342532_1343894_-|cytochrome-P450	unknown	unknown	gnl|CDD|225035

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LS483362.1|WP_002858404.1|1348833_1349595_-|NTP-transferase-domain-containing-protein	gnl|CDD|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.82934e-76
NZ_LS483362.1|WP_002780456.1|1334627_1335452_-|enoyl-ACP-reductase-FabI	gnl|CDD|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_LS483362.1|WP_002780449.1|1338386_1338932_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.69536e-59
NZ_LS483362.1|WP_002857939.1|1341768_1342116_+|holo-ACP-synthase	gnl|CDD|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	7.85738e-40
NZ_LS483362.1|WP_002780442.1|1341232_1341769_+|flagellar-basal-body-associated-protein-FliL	gnl|CDD|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.30474e-91
NZ_LS483362.1|WP_010891933.1|1339741_1341130_-|phosphoglucosamine-mutase-PgmL	gnl|CDD|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_LS483362.1|WP_002857981.1|1345084_1346269_-|capsule-polysaccharide-modification-protein-KpsS	gnl|CDD|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_LS483362.1|WP_002857891.1|1346265_1348335_-|capsular-polysaccharide-biosynthesis-protein	gnl|CDD|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_LS483362.1|WP_002855528.1|1335455_1336127_-|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_LS483362.1|WP_002858455.1|1333130_1334624_-|hydrogenase-small-subunit	gnl|CDD|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.777e-157
NZ_LS483362.1|WP_002857989.1|1328273_1329641_+|adenylosuccinate-lyase	gnl|CDD|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_LS483362.1|WP_002779147.1|1331071_1331296_+|ferrous-iron-transport-protein-A	gnl|CDD|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_LS483362.1|WP_002858238.1|1338959_1339286_+|ribosome-silencing-factor	gnl|CDD|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.85906e-37
NZ_LS483362.1|WP_002780453.1|1337328_1338327_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NZ_LS483362.1|WP_002865443.1|1331292_1333134_+|ferrous-iron-transport-protein-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_LS483362.1|WP_002858462.1|1348331_1348844_-|adenylyl-sulfate-kinase	gnl|CDD|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.00012e-100
NZ_LS483362.1|WP_010891932.1|1336123_1337326_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_LS483362.1|WP_002780438.1|1342532_1343894_-|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79

Protein sequences

>NZ_LS483362.1|WP_002858238.1|1338959_1339286_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_LS483362.1|WP_002780449.1|1338386_1338932_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_LS483362.1|WP_002780453.1|1337328_1338327_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_LS483362.1|WP_010891932.1|1336123_1337326_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_LS483362.1|WP_002855528.1|1335455_1336127_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_LS483362.1|WP_002780456.1|1334627_1335452_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_LS483362.1|WP_002858455.1|1333130_1334624_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIVAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NZ_LS483362.1|WP_002865443.1|1331292_1333134_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_LS483362.1|WP_002779147.1|1331071_1331296_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_LS483362.1|WP_002857989.1|1328273_1329641_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NZ_LS483362.1|WP_010891933.1|1339741_1341130_-|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNRGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDIKARFKN
>NZ_LS483362.1|WP_002780442.1|1341232_1341769_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_LS483362.1|WP_002857939.1|1341768_1342116_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLNPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NZ_LS483362.1|WP_002780440.1|1342116_1342536_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_LS483362.1|WP_002780438.1|1342532_1343894_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_LS483362.1|WP_002858304.1|1343890_1345012_-|membrane-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_LS483362.1|WP_002857981.1|1345084_1346269_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_LS483362.1|WP_002857891.1|1346265_1348335_-|capsular-polysaccharide-biosynthesis-protein
MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRIRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_LS483362.1|WP_002858462.1|1348331_1348844_-|adenylyl-sulfate-kinase
MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NZ_LS483362.1|WP_002858404.1|1348833_1349595_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK

Crispr_ID: NZ_LS483362_2

• CRISPR_ID: NZ_LS483362_2
• CRISPR_location: 1455107-1455407
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 4 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_LS483362_2

Consensus_repeat	Method
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

spacers of NZ_LS483362_2

>2.1|1455144|29|NZ_LS483362|CRT
TATGGCAGTTTTTAAAAGAGCTTGGCGGT
>2.2|1455210|29|NZ_LS483362|CRT,PILER-CR
TTTCCAAAGTTTCATTAGTTGAATTTAAC
>2.3|1455276|29|NZ_LS483362|CRT,PILER-CR
CTACAAGAATGAGGATGATGATATTTTAC
>2.4|1455342|29|NZ_LS483362|CRT,PILER-CR
ATGAGTGTGCTAAAAAAAATGGACTTAAA
>2.5|1455144|30|NZ_LS483362|CRISPRCasFinder
TATGGCAGTTTTTAAAAGAGCTTGGCGGTT
>2.6|1455210|30|NZ_LS483362|CRISPRCasFinder
TTTCCAAAGTTTCATTAGTTGAATTTAACT
>2.7|1455276|30|NZ_LS483362|CRISPRCasFinder
CTACAAGAATGAGGATGATGATATTTTACA
>2.8|1455342|30|NZ_LS483362|CRISPRCasFinder
ATGAGTGTGCTAAAAAAAATGGACTTAAAT

CRISPR arrays and Neighbor proteins around NZ_LS483362_2

CRISPR arrays

The CRISPR arrays of NZ_LS483362_2

>merge|NZ_LS483362|2|1455107-1455407|CRT,CRISPRCasFinder,PILER-CR
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATGGCAGTTTTTAAAAGAGCTTGGCGGTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTCCAAAGTTTCATTAGTTGAATTTAACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTACAAGAATGAGGATGATGATATTTTACAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATGAGTGTGCTAAAAAAAATGGACTTAAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_LS483362|2|1|1455107-1455407|CRT
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGGCAGTTTTTAAAAGAGCTTGGCGGT
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAAC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACAAGAATGAGGATGATGATATTTTAC
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATGAGTGTGCTAAAAAAAATGGACTTAAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_LS483362|2|2|1455108-1455407|CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGGCAGTTTTTAAAAGAGCTTGGCGGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACAAGAATGAGGATGATGATATTTTACA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATGAGTGTGCTAAAAAAAATGGACTTAAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_LS483362|2|1|1455173-1455407|PILER-CR
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAAC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACAAGAATGAGGATGATGATATTTTAC
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATGAGTGTGCTAAAAAAAATGGACTTAAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483362.1|WP_002851546.1|1465692_1466142_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_LS483362.1|WP_002851173.1|1463138_1463888_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_LS483362.1|WP_002857949.1|1453125_1453347_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NZ_LS483362.1|WP_002851174.1|1444756_1445689_-|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl|CDD|130645
NZ_LS483362.1|WP_170876396.1|1455551_1455965_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_LS483362.1|WP_002797819.1|1455975_1456866_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|187851
NZ_LS483362.1|WP_002858431.1|1450310_1451459_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_LS483362.1|WP_002851502.1|1449293_1450007_-|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl|CDD|225916
NZ_LS483362.1|WP_002851320.1|1461486_1462476_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_LS483362.1|WP_002851407.1|1463862_1464594_+|glucosaminidase-domain-containing-protein	unknown	unknown	gnl|CDD|225539
NZ_LS483362.1|WP_002858151.1|1453797_1454988_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_LS483362.1|WP_002851264.1|1445685_1446327_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_LS483362.1|WP_002855462.1|1466271_1467492_-|glucose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|235168
NZ_LS483362.1|WP_002851523.1|1462536_1463142_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_LS483362.1|WP_010891941.1|1446323_1449128_-|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NZ_LS483362.1|WP_002781229.1|1453347_1453794_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_LS483362.1|WP_002851537.1|1449127_1449319_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NZ_LS483362.1|WP_002858205.1|1451582_1453124_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NZ_LS483362.1|WP_002864485.1|1456862_1459817_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226044
NZ_LS483362.1|WP_002851155.1|1464590_1465628_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LS483362.1|WP_002797819.1|1455975_1456866_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	5.4e-99	325.5	10.2
NZ_LS483362.1|WP_002864485.1|1456862_1459817_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	0	1184.9	71.5
NZ_LS483362.1|WP_170876396.1|1455551_1455965_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	3.5e-55	179.9	0.7

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LS483362.1|WP_002851546.1|1465692_1466142_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_LS483362.1|WP_002851173.1|1463138_1463888_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.97072e-93
NZ_LS483362.1|WP_002857949.1|1453125_1453347_+|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
NZ_LS483362.1|WP_002851174.1|1444756_1445689_-|formate-dehydrogenase-subunit-gamma	gnl|CDD|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NZ_LS483362.1|WP_170876396.1|1455551_1455965_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.67561e-55
NZ_LS483362.1|WP_002797819.1|1455975_1456866_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_LS483362.1|WP_002858431.1|1450310_1451459_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_LS483362.1|WP_002851502.1|1449293_1450007_-|molecular-chaperone-TorD-family-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_LS483362.1|WP_002851320.1|1461486_1462476_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_LS483362.1|WP_002851407.1|1463862_1464594_+|glucosaminidase-domain-containing-protein	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NZ_LS483362.1|WP_002858151.1|1453797_1454988_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_LS483362.1|WP_002851264.1|1445685_1446327_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_LS483362.1|WP_002855462.1|1466271_1467492_-|glucose-6-phosphate-isomerase	gnl|CDD|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_LS483362.1|WP_002851523.1|1462536_1463142_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
NZ_LS483362.1|WP_010891941.1|1446323_1449128_-|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_LS483362.1|WP_002781229.1|1453347_1453794_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_LS483362.1|WP_002851537.1|1449127_1449319_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_LS483362.1|WP_002858205.1|1451582_1453124_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.73566e-121
NZ_LS483362.1|WP_002864485.1|1456862_1459817_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_LS483362.1|WP_002851155.1|1464590_1465628_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34

Protein sequences

>NZ_LS483362.1|WP_002858151.1|1453797_1454988_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_LS483362.1|WP_002781229.1|1453347_1453794_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_LS483362.1|WP_002857949.1|1453125_1453347_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>NZ_LS483362.1|WP_002858205.1|1451582_1453124_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_LS483362.1|WP_002858431.1|1450310_1451459_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_LS483362.1|WP_002851502.1|1449293_1450007_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_LS483362.1|WP_002851537.1|1449127_1449319_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_LS483362.1|WP_010891941.1|1446323_1449128_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_LS483362.1|WP_002851264.1|1445685_1446327_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_LS483362.1|WP_002851174.1|1444756_1445689_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_LS483362.1|WP_170876396.1|1455551_1455965_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_LS483362.1|WP_002797819.1|1455975_1456866_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_LS483362.1|WP_002864485.1|1456862_1459817_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_LS483362.1|WP_002851320.1|1461486_1462476_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NZ_LS483362.1|WP_002851523.1|1462536_1463142_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>NZ_LS483362.1|WP_002851173.1|1463138_1463888_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NZ_LS483362.1|WP_002851407.1|1463862_1464594_+|glucosaminidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_LS483362.1|WP_002851155.1|1464590_1465628_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_LS483362.1|WP_002851546.1|1465692_1466142_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_LS483362.1|WP_002855462.1|1466271_1467492_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483362_2	2.1|1455144|29|NZ_LS483362|CRT	1455144-1455172	29	MN530981	Campylobacter phage DA10, complete genome	5260-5288	0	1.0
NZ_LS483362_2	2.2|1455210|29|NZ_LS483362|CRT,PILER-CR	1455210-1455238	29	MN530981	Campylobacter phage DA10, complete genome	33283-33311	0	1.0
NZ_LS483362_2	2.3|1455276|29|NZ_LS483362|CRT,PILER-CR	1455276-1455304	29	MN530981	Campylobacter phage DA10, complete genome	30557-30585	0	1.0
NZ_LS483362_2	2.4|1455342|29|NZ_LS483362|CRT,PILER-CR	1455342-1455370	29	MN530981	Campylobacter phage DA10, complete genome	4835-4863	0	1.0
NZ_LS483362_2	2.5|1455144|30|NZ_LS483362|CRISPRCasFinder	1455144-1455173	30	MN530981	Campylobacter phage DA10, complete genome	5259-5288	0	1.0
NZ_LS483362_2	2.6|1455210|30|NZ_LS483362|CRISPRCasFinder	1455210-1455239	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
NZ_LS483362_2	2.7|1455276|30|NZ_LS483362|CRISPRCasFinder	1455276-1455305	30	MN530981	Campylobacter phage DA10, complete genome	30556-30585	0	1.0
NZ_LS483362_2	2.8|1455342|30|NZ_LS483362|CRISPRCasFinder	1455342-1455371	30	MN530981	Campylobacter phage DA10, complete genome	4834-4863	0	1.0
NZ_LS483362_2	2.3|1455276|29|NZ_LS483362|CRT,PILER-CR	1455276-1455304	29	KX229736	Campylobacter phage PC5, complete genome	24059-24087	2	0.931
NZ_LS483362_2	2.7|1455276|30|NZ_LS483362|CRISPRCasFinder	1455276-1455305	30	KX229736	Campylobacter phage PC5, complete genome	24059-24088	2	0.933
NZ_LS483362_2	2.4|1455342|29|NZ_LS483362|CRT,PILER-CR	1455342-1455370	29	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	223774-223802	6	0.793
NZ_LS483362_2	2.1|1455144|29|NZ_LS483362|CRT	1455144-1455172	29	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109840	7	0.759
NZ_LS483362_2	2.2|1455210|29|NZ_LS483362|CRT,PILER-CR	1455210-1455238	29	MG602477	Bacillus phage BCP01, complete genome	154164-154192	7	0.759
NZ_LS483362_2	2.2|1455210|29|NZ_LS483362|CRT,PILER-CR	1455210-1455238	29	KX495186	Bacillus phage PK16, complete genome	23958-23986	7	0.759
NZ_LS483362_2	2.8|1455342|30|NZ_LS483362|CRISPRCasFinder	1455342-1455371	30	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	223774-223803	7	0.767
NZ_LS483362_2	2.5|1455144|30|NZ_LS483362|CRISPRCasFinder	1455144-1455173	30	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109841	8	0.733
NZ_LS483362_2	2.6|1455210|30|NZ_LS483362|CRISPRCasFinder	1455210-1455239	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
NZ_LS483362_2	2.6|1455210|30|NZ_LS483362|CRISPRCasFinder	1455210-1455239	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
NZ_LS483362_2	2.8|1455342|30|NZ_LS483362|CRISPRCasFinder	1455342-1455371	30	NC_029073	Geobacillus virus E3, complete genome	3146-3175	8	0.733

1. spacer 2.1|1455144|29|NZ_LS483362|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggt	CRISPR spacer
tatggcagtttttaaaagagcttggcggt	Protospacer
*****************************

2. spacer 2.2|1455210|29|NZ_LS483362|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaac	CRISPR spacer
tttccaaagtttcattagttgaatttaac	Protospacer
*****************************

3. spacer 2.3|1455276|29|NZ_LS483362|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacaagaatgaggatgatgatattttac	CRISPR spacer
ctacaagaatgaggatgatgatattttac	Protospacer
*****************************

4. spacer 2.4|1455342|29|NZ_LS483362|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atgagtgtgctaaaaaaaatggacttaaa	CRISPR spacer
atgagtgtgctaaaaaaaatggacttaaa	Protospacer
*****************************

5. spacer 2.5|1455144|30|NZ_LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
tatggcagtttttaaaagagcttggcggtt	Protospacer
******************************

6. spacer 2.6|1455210|30|NZ_LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaact	CRISPR spacer
tttccaaagtttcattagttgaatttaact	Protospacer
******************************

7. spacer 2.7|1455276|30|NZ_LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacaagaatgaggatgatgatattttaca	CRISPR spacer
ctacaagaatgaggatgatgatattttaca	Protospacer
******************************

8. spacer 2.8|1455342|30|NZ_LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atgagtgtgctaaaaaaaatggacttaaat	CRISPR spacer
atgagtgtgctaaaaaaaatggacttaaat	Protospacer
******************************

9. spacer 2.3|1455276|29|NZ_LS483362|CRT,PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 2, identity: 0.931

ctacaagaatgaggatgatgatattttac	CRISPR spacer
ctacaagaatgaaaatgatgatattttac	Protospacer
************..***************

10. spacer 2.7|1455276|30|NZ_LS483362|CRISPRCasFinder matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 2, identity: 0.933

ctacaagaatgaggatgatgatattttaca	CRISPR spacer
ctacaagaatgaaaatgatgatattttaca	Protospacer
************..****************

11. spacer 2.4|1455342|29|NZ_LS483362|CRT,PILER-CR matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 6, identity: 0.793

atgagtgtgctaaaaaaaatggacttaaa	CRISPR spacer
aagatatagctaaaaaaaattgacttaaa	Protospacer
* **    ************ ********

12. spacer 2.1|1455144|29|NZ_LS483362|CRT matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 7, identity: 0.759

tatggcagtttttaaaagagcttggcggt	CRISPR spacer
gctgccagtttttaaaagagctttacaat	Protospacer
  ** ****************** .*..*

13. spacer 2.2|1455210|29|NZ_LS483362|CRT,PILER-CR matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 7, identity: 0.759

tttccaaagtttcattagttgaatttaac	CRISPR spacer
ataataaagtttcattagaagaatttaaa	Protospacer
 *  .*************  ******** 

14. spacer 2.2|1455210|29|NZ_LS483362|CRT,PILER-CR matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 7, identity: 0.759

tttccaaagtttcattagttgaatttaac	CRISPR spacer
ataataaagtttcattagaagaatttaaa	Protospacer
 *  .*************  ******** 

15. spacer 2.8|1455342|30|NZ_LS483362|CRISPRCasFinder matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 7, identity: 0.767

atgagtgtgctaaaaaaaatggacttaaat	CRISPR spacer
aagatatagctaaaaaaaattgacttaaaa	Protospacer
* **    ************ ******** 

16. spacer 2.5|1455144|30|NZ_LS483362|CRISPRCasFinder matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 8, identity: 0.733

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
gctgccagtttttaaaagagctttacaatg	Protospacer
  ** ****************** .*..* 

17. spacer 2.6|1455210|30|NZ_LS483362|CRISPRCasFinder matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********  

18. spacer 2.6|1455210|30|NZ_LS483362|CRISPRCasFinder matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********  

19. spacer 2.8|1455342|30|NZ_LS483362|CRISPRCasFinder matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 8, identity: 0.733

atgagtgtgctaaaaaaaatggacttaaat	CRISPR spacer
gaaatattgctaaaaaaaatggattaaaat	Protospacer
. .*   ****************.* ****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1358018 : 1364654	8	Tupanvirus(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_LS483362|1358018:1364654|DBSCAN-SWA
TTCAATTATTGATTAGAAAATGATAATAATCCTCAGGCACACCAATATCTATAAAATAATCATCAAAAATACAAGCCCTAGCCTTTAGTTTTTTATAATTTTCTTGTAAAAACTCTTCAAAAGAAAATTTTTCCTGCAAAGCAAAATCATTAAAAATATCTTTAGTTAAAAGATAAATTCCACCATTGATTAAACCTTGCTTTTTAAATACCTTTTCCTCAAAAGAAATTACAAGATCTTGTTCATCAACATTTACTGTGCCGTATCTATCAAAATCATTCATTTGTTTTAAAGCAAGACAAATTTTACTTTCATTTAGCTTTAATTTACTTAAATCTATGTCAAAAAAAGTATCACCATTTAAAACATAAGCTTCATTTTTTACAAATTTCAAAGTCTCTTTTATGGCTCCGCCTGTTCCTAGAGGCTCTTTTTCGATGCTGTATTTTATTTTTATACCTAAAAACTCATCTTTAAAATACTCTTTTATCACTTCATATTTGTATGATACTGCTAAAATTACTTCTTTTATACCTTGCTTTTTAAGATACTCAAAAATAAATTCTAAAAAAGGCTTATCATTTATCGGTGCCATAGGCTTTGGAATGTCTTTTATAATACTTTTAAGTCTTGTTCCTAAGCCGCCACAAAGTATTATTGCTTGCAAGAAAAACCTTTACCAAAAAGCTCTTCTTCGACAATAGCACAAATAATATGTCCTATTAAAATATGCGCTTCTTGAATTCTTGGCGTGCAAGTTGAAGGCACTTTTATACAATAATCACAAAGTTCATTCATAGCCCCGCCACTAGCTCCACTTAAGCCTATACTTATGATTTCTTTTTGTTTGCAAAACTCTAAAGCTTTTAAGATATTTTTACTATTTCCACTTGTTGAAATGCCTATAAAAACATCTCCCTTAACACCTTGAGCTTGCACTTGTCTAGCAAACAAATTTTCATAACCATAGTCATTACCAATAGCTGTTAATATGCTAGTATCTGTAGTAAGTGCAATACTTGCGATACCGGGTCTATCAAAATAAAACCTACTTACAAATTCCCCTGCAATATGCTGTGCATCTGCAGCACTGCCACCATTTCCTGCTAATAAAGTTTTGTTACCATTTTTATAAGCTTTTATGACTTCTAATGAAGCATTTTTAATAAGAGTTATCAAATTCTCATCTTTTAAAATTTGTTCTTTTACTAAAATAGAATCTGCAAAATGTCCTTTTATATAGGAATTTAAATTCTCCATGATTTAACCCCCTCTTTTGTAAATGAAAAATCTTGCACATAACCTTGCTCTTTTCTTAAAGCTTTGATTAAGTTGTATTTTTTAGTAGGATCTACGAAGAAAAACATAAATCCACCAGCTCCTGCTCCGCTGGTTTTGCCACTATAGGCTCCGTTATCTATAGCAAGTTTATAAATTCTTTCAAGCTCATCATTACTAACGATTTCTGAAATGATTTTTTTTGACCGCCAAGATTTTCCTAAAATTTGCGCCAAAGTACCAAAATCGGCTCTAAATAAAGCTTCTTTCATCTTTATAGCATCTTGTTTTATCGCGTGCATGGCTTCTAAAGATTTTTCATCTCCAAGCTTTCCTTTTTTATGCTCTTCTATATCTTTTGCTTCTCTTGTGATATTTGTAAAATAAAGCACAGTTCTAGCTTCAAGCTCACTAGCTATCCAGTTTTTAATACGCAAAGGATTAACAATGACTCTTTTATTGTTATAAAATTCCATAAAATTAAAACCACCAAAAGTTGCGGCGTATTGATCTTGTGCTCCACCTACTATGCCTAAATCTTCTCTTTCTATCTCGTAAGCAAGTTTAGCGATTTCATATTCTCCTAAAGGTAGATTAAGCCATTCTGCAAAGGCTTTTATAACCCCTACAACCAAAGTTGAGCTTCCGCCCAAGCCACTACCACTTGGTACATCCGAATAGGTATGCAAAGAAAAACTCAAAGGTTTTTTTGTAAAATCTTTTACAATGCGATTATAAATACTTTTAAAAATATCTAATTTTCCATCATTTCCTAAGAATTCTTTACTTTCGTACTCACAGTAAGAATTTGTATCAGGAGAATCAAAAATGATTTTTCCATCTTCTCTTTTGATCAAAGTACAATGTATGTATAAAGATATAGTCGCATTTAAAACATAACCTGTATATTTATCACAATATAAATTTATATCAGTCCCACCACCTGCTAGACCGAGACGAAGAGGAGTTTGTGTGCGTATGGTTTTCATAAATCTCCTAATTTATTTATCATATCCAATCAAGTAAAATATTTTGAATATTACATTTATTAATCAATTGCTTTAACTCCCCTATCTTTTTCTCTGAATCATCAAACATATATTCATGTGTTTCACAAGCAATATAATCAATTTTTTTATATATTTTTTTTTCAATAATTTTTTTCATTATCTCAAACTCCATTCCTTCAATATCAAGTTTTAGAAAATAAATCCTTTTATGTTGTGTTAAAATTTCATTTTCGATAAACTCGCATAAATCAATTACTTGAACTTTATATGTTTTTTCCGTCTGACTGTCTTGTACACTTTCAACTATACGATTGCCTTGAGATAGTATCCTATTTCCAAACATAATAAAATCTGTTTCATAATTTCTGTCCGATACTGCTTTTTGAAAAAGTTTTACATTTATATTATTTTCATATTTTTTTCTTAAAAAATAATTTAAATAAATATTTGGCTCAAAGATATAACTTTGCCCGCCACAATGTAAAATAATATCAGTAATTAAGCCTGCATGTCCACCACAATCAATACATACTGGACGATATCCATCCCCCCCCCCATATTTATCGACATAAAGCATCTTGTAAAAAATATCATAATATTGTTTTGGAATTCTGGCATTATCTAATAACAAATTTAATCTACCAAGCCCTTGTGGATCGGCTATAGCACCCTGAATTAAATGCAATGCATTATAAACATTTTCTTGCTTATTCCAATGGTTTAATACTTGCAACTCTGAAATTATCCTTTCTACATCAGCTATTGGTTTCCTAGCTTGCTGATGATTATCAATTTGATAAATCAAGCCATTTAGAGCCTCTTTTAATACTTCCAATTGTTCTTTTTTCATTATTTATCTCCTTTAATTTTAATTAAAATTTGCAAAGCGATTAACTTTCATCATTTTAAACGCTCTTAAAAGCTCTTTAATACCATCTTCTAAAGTATTATCTGGTTTCCAACCTGTAGCCTCTAATTTAGTATTTGAAACCAAATAATCTCTTTTATCTGGATCTTCACCTATGTTGGCTGAATGGATATAAAAATCAGGAATATACTTTTTAATTGTTTCAGCAAGCTGTCTTTTGGTCAAATTTGCAGAACTTAATCCCATGTTATAAGCCTGACCCTTCATCTTATCATAATTCTCAATTCCATGAATAAATCCTTTAACCACATCGCGAACATGAATATAATTGCGTCTAAAATGCTCTTCAAAAAGCACTATAAATTTATCTCTATATGCACGATAAGTAAAATCATTAACAAGTAAATCAAGTCTCATTCTAGGTGAAATTCCAAAAACAGTAGCTAAACGAAAAGTCACACAATTTCCTTTATCGAGCAAATATTGCTCCGCATGCACTTTATCGATCCCATATTCTGAGATAGGACGCAAGGGAGATTCTTCAGTACACATTGCATCTTTTTCTCCTATACCATAACCGCTGTTTGTATTGGGATAAATAAATATTTGAGAAGGACTTGCAAAATCACTTATCATTTTTACGGCTTCATAATTGATCATTTTAGCTAATTTTGGATTTCTTTTACAAAGTGGAGCTCCAACTAAAGCAGCTAGAGGAATAATAATATCAGCTTTTGCTACCTCTTGCCTAATAAGATTTTCATCCATAGCATCACCATTTATAAAAGTAAAATTTTTATTATGAAAACAAGATAAAAGAGAAATTTGATCAAACATCAAATTATCAATCACACAAACTTCATAACCTTTTTCAAGTAAAATCGGCGTTAAAACCGAACCTATATAACCTGCACCACCTGTAATTAAAACTTTTTTTGACATACTTTTCCTTTCGTCTTTGAAAATCAATTTTGTGTTTTATACCATTCATACATCATTTTAATACCATCTTTAAGTTCAATTTTATGCTTCCAACCTAAAGAATGAATTTTTGAGCAATCCATAAGTCTATCCATTGTGCTATCCGGTCTAGAAGTATTGAAAACTAGTTCTCCGCTAAACCCAACTATATTTTTTACCATCAAAGCAACTTCTTTGATTGAATAGTCAATACCTGTCCCTATATTAATATGGGTATTTTTACTTTTTCTATCTTTAATAAGATCTTTAAAATCAATATTTTGCATCGTATAGATAGCTACATCGGCTAGATCGTCACTATGAATAAATTCTCTCCTAACTTTTCCAGTGCCCCAAATTTCTACACTTTTTTTACTAATTCCAAAATTATGCAAATATTCTTTTGCTTCTTCAAAATTATTCATTTTCAAATCTTGAAGGATTTGAGTTATATTACCCTCGCTTAACAATTTTGCTAAATGAAATTTTCTAAGCAATGCGGGTAAGACTCTTGATTTTCCAAAATCAAAATTTGCTTTAGTTCCGTAAAGATTATTTAAAACAAGAGTAATGAAATTAGTACCATATTGAATATTATAACTTTCACACATTATAGCTCCAGCTATTTTGGCTGCACCAAAAGAATAAGCGCCATATTCTAAATCACCTTGAAATAAATATTCCTCTTTCAATGGGTTTTTAGCATTCTCAGGATACATATACCCAGAACCAAAAAATACCAATTTTTTAACATTATTAAGAAATGAATTGTGAATAACATTGTTTTGAATCATCAAATTTTCATAAATAAAATCAGCCCTTTGAGCGACATTTGCAGCACCACAAGGTAAGACTGCAGTCAAAAAAACATATTCTGGCTTTTCTTCTTTAAAAAATTTAGCAACCGCTTGCTGATTAACCAAATCAAGCTCTTGCCTTGTTTTTAAAACAAGATTATTAAATCCTCTTTTTTGTAAGTTTTCTACCAATGCTGTACCTGCGGTTCCTTTGTGCCCCGCTATATATATTTTTGAATTTGTTTGCATCAATAACCTCTAAATCGTATTGGAATTTCTGGATTTGAAATCCAAGGAAAATCTAAATTTTTAAATCCCCCTGCGACATCTCTATATTTCATAATATCAAGATTAATCAAATTTTTTCTTAAATAACTAACCTCCAAAGTGGTACTAAAAAATAATCCTTGAGAATAAAAAATTTTCCCATGGTTGTGAAAATGTGTATGCATTGGAACAAAATATTCATTAAGTTTTTTTAGCAAACTTATTCTTTTTTCCACCCCATCTTGCTCCTCAGGATTGCACCCATGAAATTCAAATATAACTTGTGAGAAATATTTATTTAAAATACTTATATCAATATTTTCAAGCATATCCCATTCGCAATTTTCAATATCACATTGCAAAATATTTGGCTTGTTCTCATCTAAATTATTATCTTTTAAAGCTTGTACCAAAGTAATTGTATTCTCATTATTTACATTACCTATAAATTTTTTATGAAAAACAATATTTTCATGGTCATAAGGACATTTTTCTATACTAGCATCATATTCTATCACCTTAAATCCCCTCTGAGCCATTTCTAAATCCCAAGGAGAACTATCCGAAACACCCAAAGAAAGAGCTTTTGCATTAATATCACTCATATCCCCCCCCCCATTATACATCACATAACCACCATCTCCATTACCACCTATTCTTAACAAATCACACAAAGGCAATTCCAAAGGTCGAATGAGATTTAAATAATTTATAATATTTTGATAACATTGTTCATTATTATTTATACGAATATAATTTCTATCTCTTGCTTGTAATAATAAAAGTAAAATTTCTTTATCTTTTTTATCAATATCTAAATTCGAAATAATATTTGACATTAAGATTTGATAGGACAATTGATTGCTAAGTTTAATATTATTATTTAATTCTTTTAATAATTTTTCCATAATTTATCCTTTATTTTTAGTTGCAAGAATATCGCGATCGGAAAGAATAGGCGTATTTGTTGGCCAATCTATACCAATTCTTTCATCATTCCATGCATAAGTAAATTGATCAGGTGCATCCATATATTCCCCCTCATAAGCAAGTTTATAATAATACACTGCTTCCTTTGAACTCACATAATGAGAATTTCCCATATTTGGTGGTAATAAAATAAGTTGCTGATTTTTATAACTTATAATAAATTTCTCCCATTTTAAATAAGTTGGGGAATCTTTTCTGCAATCAACCACAACTTGATGCACTTCTCCATAGACACAAGTTACAAGTTTGTAAGTTTTCACATCTCCGTGTATTCCACGTAAAACATTAAAATGGGAATTTATAAATTTGTCATGCTTAAATTTAATTCCATCTGGAACCAACTTGCTTAAATATTCATCTGTAAAAGCTGTCCAAATTTCACCTCTTAAATCTCTAAATTTATTAGGAGTTATAATATACACTCCTTTTAAAATTTTTGATTCTTGTATATCAAATTCTATTGCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_LS483362|1358018:1364654|1358018_1358684_-|WP_002857908.1|DBSCAN-SWA
MQAIILCGGLGTRLKSIIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKETLKFVKNEAYVLNGDTFFDIDLSKLKLNESKICLALKQMNDFDRYGTVNVDEQDLVISFEEKVFKKQGLINGGIYLLTKDIFNDFALQEKFSFEEFLQENYKKLKARACIFDDYFIDIGVPEDYYHFLINN
>NZ_LS483362|1358018:1364654|1359264_1360284_-|WP_002858413.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCTLIKREDGKIIFDSPDTNSYCEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFRADFGTLAQILGKSWRSKKIISEIVSNDELERIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALRKEQGYVQDFSFTKEGVKSWRI
>NZ_LS483362|1358018:1364654|1361173_1362115_-|WP_002858299.1|DBSCAN-SWA
MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLSCFHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDLLVNDFTYRAYRDKFIVLFEEHFRRNYIHVRDVVKGFIHGIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSANIGEDPDKRDYLVSNTKLEATGWKPDNTLEDGIKELLRAFKMMKVNRFANFN
>NZ_LS483362|1358018:1364654|1364108_1364654_-|WP_002858190.1|DBSCAN-SWA
MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIISYKNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGIDWPTNTPILSDRDILATKNKG
>NZ_LS483362|1358018:1364654|1358671_1359277_-|WP_002857991.1|DBSCAN-SWA
MENLNSYIKGHFADSILVKEQILKDENLITLIKNASLEVIKAYKNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQVQAQGVKGDVFIGISTSGNSKNILKALEFCKQKEIISIGLSGASGGAMNELCDYCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ
>NZ_LS483362|1358018:1364654|1360303_1361155_-|WP_002857889.1|DBSCAN-SWA
MKKEQLEVLKEALNGLIYQIDNHQQARKPIADVERIISELQVLNHWNKQENVYNALHLIQGAIADPQGLGRLNLLLDNARIPKQYYDIFYKMLYVDKYGGGDGYRPVCIDCGGHAGLITDIILHCGGQSYIFEPNIYLNYFLRKKYENNINVKLFQKAVSDRNYETDFIMFGNRILSQGNRIVESVQDSQTEKTYKVQVIDLCEFIENEILTQHKRIYFLKLDIEGMEFEIMKKIIEKKIYKKIDYIACETHEYMFDDSEKKIGELKQLINKCNIQNILLDWI
>NZ_LS483362|1358018:1364654|1363178_1364105_-|WP_002864204.1|DBSCAN-SWA
MEKLLKELNNNIKLSNQLSYQILMSNIISNLDIDKKDKEILLLLLQARDRNYIRINNNEQCYQNIINYLNLIRPLELPLCDLLRIGGNGDGGYVMYNGGGDMSDINAKALSLGVSDSSPWDLEMAQRGFKVIEYDASIEKCPYDHENIVFHKKFIGNVNNENTITLVQALKDNNLDENKPNILQCDIENCEWDMLENIDISILNKYFSQVIFEFHGCNPEEQDGVEKRISLLKKLNEYFVPMHTHFHNHGKIFYSQGLFFSTTLEVSYLRKNLINLDIMKYRDVAGGFKNLDFPWISNPEIPIRFRGY
>NZ_LS483362|1358018:1364654|1362138_1363179_-|WP_002864205.1|DBSCAN-SWA
MQTNSKIYIAGHKGTAGTALVENLQKRGFNNLVLKTRQELDLVNQQAVAKFFKEEKPEYVFLTAVLPCGAANVAQRADFIYENLMIQNNVIHNSFLNNVKKLVFFGSGYMYPENAKNPLKEEYLFQGDLEYGAYSFGAAKIAGAIMCESYNIQYGTNFITLVLNNLYGTKANFDFGKSRVLPALLRKFHLAKLLSEGNITQILQDLKMNNFEEAKEYLHNFGISKKSVEIWGTGKVRREFIHSDDLADVAIYTMQNIDFKDLIKDRKSKNTHINIGTGIDYSIKEVALMVKNIVGFSGELVFNTSRPDSTMDRLMDCSKIHSLGWKHKIELKDGIKMMYEWYKTQN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857908.1|1358018_1358684_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
WP_002857991.1|1358671_1359277_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002858413.1|1359264_1360284_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002857889.1|1360303_1361155_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_002858299.1|1361173_1362115_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002864205.1|1362138_1363179_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
WP_002864204.1|1363178_1364105_-	hypothetical protein	NA	NA	NA	NA
WP_002858190.1|1364108_1364654_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4