CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483378	Streptococcus sobrinus strain NCTC12279 chromosome 1	1 crisprs	DEDDh,cas3,csa3,RT,DinG	0	1	2	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483378_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483378_1

171973-172043

Orphan

Consensus_repeat	Method
GGTTCGGGGAACCTTTTTATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483378_1

>merge|NZ_LS483378|1|171973-172043|CRISPRCasFinder
GGTTCGGGGAACCTTTTTATCCCGAGCTTGAAAACTGGGAAGCGAGGCGGTTTGGGGAACCTTTTTATCCC

>NZ_LS483378|1|1|171973-172043|CRISPRCasFinder
GGTTCGGGGAACCTTTTTATCCC	GAGCTTGAAAACTGGGAAGCGAGGC
GGTTTGGGGAACCTTTTTATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483378.1\|WP_002961177.1\|174810_175572_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|183513
NZ_LS483378.1\|WP_021673426.1\|179320_179959_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319859
NZ_LS483378.1\|WP_002959528.1\|162299_163637_+\|PFL-family-protein	unknown	unknown	gnl\|CDD\|180009
NZ_LS483378.1\|WP_019773382.1\|164204_165140_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_LS483378.1\|WP_002961192.1\|180049_180631_+\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|225880
NZ_LS483378.1\|WP_002961173.1\|170133_171969_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_LS483378.1\|WP_002961185.1\|177843_179127_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_LS483378.1\|WP_002961168.1\|165900_166602_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_LS483378.1\|WP_002961179.1\|175561_176032_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|227064
NZ_LS483378.1\|WP_002959526.1\|162021_162288_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923
NZ_LS483378.1\|WP_019777566.1\|174071_174845_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_LS483378.1\|WP_002961170.1\|167520_168105_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224619
NZ_LS483378.1\|WP_002961183.1\|176752_177601_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_LS483378.1\|WP_002961171.1\|168271_169306_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_LS483378.1\|WP_028798558.1\|180923_182528_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_LS483378.1\|WP_002961181.1\|176040_176604_+\|TIGR01440-family-protein	unknown	unknown	gnl\|CDD\|237472
NZ_LS483378.1\|WP_002961167.1\|165330_165762_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_LS483378.1\|WP_002961172.1\|169325_169877_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237628
NZ_LS483378.1\|WP_002961169.1\|166588_167356_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|367124
NZ_LS483378.1\|WP_002961174.1\|172535_173672_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237653

Protein	Function_ID	Function_description	E-value
NZ_LS483378.1\|WP_002961177.1\|174810_175572_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|183513	PRK12413, PRK12413, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	2.70052e-150
NZ_LS483378.1\|WP_021673426.1\|179320_179959_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319859	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW. This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.73093e-33
NZ_LS483378.1\|WP_002959528.1\|162299_163637_+\|PFL-family-protein	gnl\|CDD\|180009	PRK05313, PRK05313, hypothetical protein; Provisional.	0
NZ_LS483378.1\|WP_019773382.1\|164204_165140_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.37168e-104
NZ_LS483378.1\|WP_002961192.1\|180049_180631_+\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|225880	COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription].	1.06384e-30
NZ_LS483378.1\|WP_002961173.1\|170133_171969_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_LS483378.1\|WP_002961185.1\|177843_179127_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.03145e-160
NZ_LS483378.1\|WP_002961168.1\|165900_166602_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.99833e-48
NZ_LS483378.1\|WP_002961179.1\|175561_176032_+\|ECF-transporter-S-component	gnl\|CDD\|227064	COG4720, COG4720, Predicted membrane protein [Function unknown].	1.18268e-28
NZ_LS483378.1\|WP_002959526.1\|162021_162288_+\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	7.95131e-41
NZ_LS483378.1\|WP_019777566.1\|174071_174845_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.10115e-128
NZ_LS483378.1\|WP_002961170.1\|167520_168105_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	2.69131e-38
NZ_LS483378.1\|WP_002961183.1\|176752_177601_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.12378e-40
NZ_LS483378.1\|WP_002961171.1\|168271_169306_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	7.40319e-106
NZ_LS483378.1\|WP_028798558.1\|180923_182528_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_LS483378.1\|WP_002961181.1\|176040_176604_+\|TIGR01440-family-protein	gnl\|CDD\|237472	PRK13690, PRK13690, hypothetical protein; Provisional.	5.65217e-107
NZ_LS483378.1\|WP_002961167.1\|165330_165762_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.14951e-14
NZ_LS483378.1\|WP_002961172.1\|169325_169877_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237628	PRK14156, PRK14156, heat shock protein GrpE; Provisional.	5.3205e-87
NZ_LS483378.1\|WP_002961169.1\|166588_167356_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|367124	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase.	1.42807e-50
NZ_LS483378.1\|WP_002961174.1\|172535_173672_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237653	PRK14276, PRK14276, chaperone protein DnaJ; Provisional.	0

>NZ_LS483378.1|WP_002961173.1|170133_171969_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKNGEIIVGDAAKRQAVTNPDTVISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAEDYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTEKDEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDYLVDEFKKENGIDLSTDKMALQRLKDAAEKAKKDLSGVTQTQISLPFITAGDAGPLHLEVSLTRAKFDDLTRDLVDRTKTPVRRALSDAGLSLSEIDEVILVGGSTRIPAVVEVVKAETGKEPNKSVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGVPQIEVTFDIDKNGIVSVKAKDLGTQKEQHIVIKSNDGLSEDEIERMMKDAEANADADAKRKEEVDLKNEVDQAIFATEKTIKETEGKGFDTERDAAKTALDDLKKAQESGNTDDMKAKLETLNEKAQALAVKLYEQAAAAQQAAGGDQAADANDAGSKDSGDDVVDGEFTEK
>NZ_LS483378.1|WP_002961172.1|169325_169877_+|nucleotide-exchange-factor-GrpE
MSEDIKKEKEEDVTQEAPSSEAEEKQQAQEATPEEATEKTELAAALEKVEDFENKFLRAHAEMQNIQRRANEERQQLQKYRSQDLAKGVLPSLDNLERALAVEGLSDDVKKGIEMVQESLLQALKEEGVEEVPVDSFDHNFHMAVQTLPADDDHPADSIAQVLQKGYQLHDRLLRPAMVVVYN
>NZ_LS483378.1|WP_002961171.1|168271_169306_+|heat-inducible-transcriptional-repressor-HrcA
MITQRQNDILSIIVELFTQTHEPVGSKALQAYISTSSATIRNDMAILEKIGLLEKAHTSSGRLPSRQGFQYYVSHLLNLESVDEEDAYQVIKAFDFEFFKLEDVLKKAGDVLADLTECTAITLDVEPSNQRLSAFDIVKLSHHDALAVMTFDDSNTVTSQFAIPKNFLDEDLLVVSQLVRERFLGQTVMEIHYRIRTEIPQIVQRYFKITDNVLELFEHIFKEMFVEKLFLSGKENLLKYSDDQTYRLLDNTQELALTIRRQFQEEQAYVIRLADENKQGLEALSQLSYKFLIPYRGFGNLTLLGPVTIDYRRSMGLLNVVSRVLTMKLADFYRYLSSNHYEVH
>NZ_LS483378.1|WP_002961170.1|167520_168105_+|glucosaminidase-domain-containing-protein
MQSRLKFRPFMIVFGLVLALVLLPLLLNMRTKAANTKVTSTYSQASFIKEVAPVAQKLSKAYGVKASVLIAQVAQSTDYGSNLLAVRYHNYLGVLAQPGDARIVLTTQSYEKGKWETVKQPYKIYENWQDSLYDYMEEISAGMWGKQLYTTLATTEEYTTAARALQKAGVDTDPEYANKLIAIIQGKNLTQYDK
>NZ_LS483378.1|WP_002961169.1|166588_167356_+|D-alanyl-D-alanine-carboxypeptidase-family-protein
MNKRSRQFLMIFFAVLVIIFGFAYFHDRKASQQSKGTSSQTTKTKQVTRAAGSSSDNNSSASGSDLPDVSADDWQLIVVNRDNITKELNPDLTTIDNIKVDSRIADNVKEFLAAAQKIDSKEHLISGYRSVAYQKELFDSYVKQEMSNDPSLSESQAEDKVKTYSQPAGASEHQTGLAIDMSTVDSLNESDPTVVEQLKKIAPDYGFVLRFEQGKSDSTGVDYEDWHFRYVGKASAKYMTEHNLSLEEYVAQLKK
>NZ_LS483378.1|WP_002961168.1|165900_166602_+|histidine-phosphatase-family-protein
MAKTRLFIARHGKTMFNTIGRAQGWSDTPLTKEGERGIQELGLGLKEAGLHFVAAYSSDSGRTLQTMEIILRELGQETIPYKRDKRIREWCFGSLDGGYDAELFNGVIPRVFDKPVEEMTYQDMANAIMAVDTAGWAEPWEALKNRIITGFSDIAKEVQAKGGGDAIVVSHGMTIATLIGLIDPSQPRSLALDNGSICQLTYEDGDLHIEAIGDMSYRQKGREILEKEANEQA
>NZ_LS483378.1|WP_002961167.1|165330_165762_-|MarR-family-transcriptional-regulator
MDLNQSLGFLLNSGAKLMKRQLDSKLRAYQITSSQWAVLKLLSQNDKLSQVEIAQAIKTDKATCGAIIDKLIKKEFVKRTISQQDQRARIIEISPLALSVTDELTSLDEETNTEALMGIKQKEQEIFIKTLEQLIINLENKEI
>NZ_LS483378.1|WP_019773382.1|164204_165140_-|IS30-family-transposase
MSYSHLTITDRIKIETYLELGLKPCQIANKLGVHKSTISRELRRCQNGYSAALAQEQYDHRAKQKGRKSRLTPKLKKEIEDGLKSSWSPEQICGRYQLEQKPMVAFKTIYNWLYAALIDLDLSVLRRKGKTRQPKETRGTFRIGTSIAKRPKEVRNRETFGHWELDTVVSSRGKSKGCLATFLERKTRFYLAFKIPDRTAKSMFSAIEQLCKLFPKEALKTFTSDRGKEFACYPLVENLGISFFFADAYSSWQRGSNENANGLLREYFPKKTDLAAISDEVLNKALYDINHRPRKCLAYRTASEALEDEFK
>NZ_LS483378.1|WP_002959528.1|162299_163637_+|PFL-family-protein
MDIQQVTETIAMIEEQNFDVRTITMGISLLDCIDPDINRAADKVYRKIVDKAANLVAVGDEISAELGIPIVNKRVSVTPISIIGAATDATDYVPLAKAMDKAAKEIGINFIGGFSALVQKGYQKGDEILIESIPRALAETDFVCSSVNIGSTKSGINMTAVRDMGQIIKETAQLSEMGPAKLVVFANAVEDNPFMAGAFHGVGEADVVINVGVSGPGVVKRALEKVKGQSFDVVAETVKKTAFKITRIGQLVGSLASERLGVKFGIVDLSLAPTPAVGDSVARVLEEMGLETVGTHGTTAALALLNDQVKKGGVMACNQVGGLSGAFIPVSEDEGMIAAVEAGSLNLEKLEAMTAICSVGLDMIAIPEDTPAETIAAMIADEAAIGVINMKTTAVRLIPRGREGDTIEFGGLLGSAPVMSVNKNSSADFIARGGQIPAPIHSFKN
>NZ_LS483378.1|WP_002959526.1|162021_162288_+|ACT-domain-containing-protein
MKAIITVVGKDSQGIVAGVSAKIADLRLNIDDITQTILDEYFTMMAVVSSPEKKDFSLLRLELEKLGEQLGVKINIQSSAIFDAMHKL
>NZ_LS483378.1|WP_002961174.1|172535_173672_+|molecular-chaperone-DnaJ
MNNQEYYDRLGVSKDASQDEIKKAYRKMSKKYHPDINKEPGAEEKYKDIQEAYETLGDEQKRAAYDQYGPDGANFGGGGAGGFSGFDGAGFGGFEDIFSSFFGGGGASRNPSAPRQGDDLQYRLNLEFEEAIFGADKDVTYNREAECETCHGSGAKPGTSPITCSRCHGQGVINVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCDTCHGTGHEKKAHKVSVKVPAGVETGQQIRLSGQGEAGFNGGPYGDLFVIINVLPSKKFERDGSTIYYTLNISFAQAALGDTVEVPTVHGYVEMTIPEGTQTGKTFRLKGKGAPRLRGGSQGDQHVTINVVTPTKLNEAQKEALLALAAASGETSIRPKKKGFFDKVKDAFDGE
>NZ_LS483378.1|WP_019777566.1|174071_174845_+|tRNA-pseudouridine(38-40)-synthase-TruA
MVRYKAVISYDGTLFAGFQHQTKERSVQEELEKTLERLNSGQPVKVHGAGRTDSGVHAYGQVIHFDLPQARDEEKLRFGLDTQSPEDIDVVSIQQVPDDFHARYNPHSKTYEFLVDTGRPKNPMMRAYATHFPYTVDLAAMQDAIADLIGTHDFTGFTASGTSVQNKVRTITEAKVERDPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQVKTILAAKDRNLAGPTAAGNGLYLKEITYESKNSSDFRQ
>NZ_LS483378.1|WP_002961177.1|174810_175572_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSQKILAISGNDVFSGGGLYADLTTYTLNGLRGFLAVTCLTAMTEQGFQVFATDAKVFRAQLASLQKVDFAGVKLGLLPNVEVAEAALNFVRSRKDLPIVLDPVLVCKEKHDVAVSALRDELLQFLPYVSILTPNLAEAEILTGLSIKNLEDMKQAAQKLQAMGAKAVVVKGGNRLDSDQALDVYCDEKGLEVLSGPLSDKNNVGAGCTFASSIASQLVLGKEPLEAVKLAKEFVYQAILHSDDYGVVQAYDK
>NZ_LS483378.1|WP_002961179.1|175561_176032_+|ECF-transporter-S-component
MTSKKTRELTLLAILTALSLALGFIHIPSPTGFLTLIDTGIFFTAFYLGSKSGAVVGGLSAFLLDFLLAYPQYMFFSLFAHGLQGYFAGWTGVRRYLGLLLASLAMVGIYILAALVLGFGWGAALAGIWGNLSQNVLGLVVGAALYRAFSKAFPRK
>NZ_LS483378.1|WP_002961181.1|176040_176604_+|TIGR01440-family-protein
MDLQNLEKETRAIVRDILERSAIKQGQIFVLGLSSSEVAGGRIGQNSSLEIGQVIVKTILEETKLKGVHLAVQGCEHLNRALVVEEAVAESKGLEIVNVLPGLHAGGSGQLAALDYMENPVEVEAVVAHAGLDIGDTFIGMHVKRVQVPLIPLQRELGGAHVTALASRPKLIGGARAKYKADPIRKN
>NZ_LS483378.1|WP_002961183.1|176752_177601_-|mechanosensitive-ion-channel-family-protein
MSIFIKYWESLHFEDLAVNLLAKAIELALLVFAFIIGKQIANWAFDKFFSHSPRLLGQTEGRRKTLIKLFHNVMNYFLYFLLIYWILAILGLPVSSLLAGAGIAGLAIGLGAQGFLSDLVNGFFILIERQFDVGDSVTVDQVSGIVSSVGIRTTEIRDFDGTLHFIPNREILLVSNKSRGDMRAQIDIPIYASTNLDRVTQIIKEVNEIEVPNSPEIVGVPNVLGPRTASNGQFIFRVDIFVQNGQQAEIYSKFYRLYQEALLKDDISLPTPNTHIQPSQKS
>NZ_LS483378.1|WP_002961185.1|177843_179127_+|trigger-factor
MSVSFENTATNRGVLTFTISQEQIQPALDTAFNKVKKNLNVPGFRKGHMPRAVFNQKFGEEALYEDALNAILPTAYEAAVAESGLDVVAQPKIDVDSMEKGQDWSIKAEVVTKPEVKLGDYKNLEVSVEESKEVSDQDVNDKIERERKNLAELTIKDAAAENGDTVVIDFVGTVDGVEFDGGKGDNFSLELGSGQFIPGFEDQLVGAKAGDDVEVKVTFPADYQAEDLAGKDAVFATKVHEVKSKEVPELDDELAKDIDEEVETLDELKAKYRKELEAAKEIAYDDAVEGAAIEKAVENAEIVELPEEMVHDEVHRAMNEFLSNMQRQGISPEMYYQLTGTTEEDLHKQYEADADKRVRTNLVIEAIAAAEGFDATDEEIEKEITDLAAEYNMPADQVRSLLSADMLKHDITMKKAIEAITSSAKVK
>NZ_LS483378.1|WP_021673426.1|179320_179959_+|HAD-IA-family-hydrolase
MGLLVDTEYLDFQLQSGYLRSIASPSVTLGVKDFSSLVGRSGQDLLMQVRNLTQTEKTFAEITAGLKKIEAKKYHPDNYLPLFRQDIVPLLQYAKEQRLLLAVASSTALNYLLDILDNCGIRNYFDLIVSGEDFESSKPHPEIYLSVLKALHVAPEEAIAIEDSSAGIAAAKAAGMDVIAYEEKRFLIDQTQANLICKNMRAIFCHIKSLRK
>NZ_LS483378.1|WP_002961192.1|180049_180631_+|DNA-directed-RNA-polymerase-subunit-delta
MELKVFAGQEKSELSMIEVARAILESRGRDHEMYFSDLVNEIQNYLEKSDADIRQALPFFYSDLNTDGSFIPLGENRWGLRTWYAIDEIDEEVITLEENGENAPKRKRKRVNAFMDGDEDAIDYNDDDPEDEDNFTPTDVEYDDENPDDEKSEVESYDSEINEIIPDEEVSDDEDDVDLNESDDEDDDEAEND
>NZ_LS483378.1|WP_028798558.1|180923_182528_+|CTP-synthase
MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITDALKEKIKRAATTTDSDVIITEVGGTVGDIESLPFLEALRQMKADVGSDNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPATQGVKNKLAQFCDVAPEAVIESLDVDHIYQVPLNMQAQGMDQIVCDHLKLDVPKADMTEWSAMVDRVLNLKKSTRIALVGKYVELPDAYLSVVEALKHSGYVNDSAIDLKWVNANDVTAENVADLLGDVDGIIVPGGFGHRGTEGKIQTIRYARENDVPMLGICLGMQLTCVEFARHVLNMQGANSSELDPDTSYPVIDLMRDQVDVEDMGGTLRLGLYPCKLKPGSKAAAAYNNQEVVQRRHRHRYEFNTKYREVFEAAGFVFSGVSPDNRLMEVVELPDKKFFVAAQYHPELQSRPNRAEELYTAFVTAAVENAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483378_1	1.1\|171996\|25\|NZ_LS483378\|CRISPRCasFinder	171996-172020	25	MH648987	Siphoviridae sp. isolate ctcj11, complete genome	23844-23868	3	0.88

1. spacer 1.1|171996|25|NZ_LS483378|CRISPRCasFinder matches to MH648987 (Siphoviridae sp. isolate ctcj11, complete genome) position: , mismatch: 3, identity: 0.88

gagcttgaaaactgggaagcgaggc	CRISPR spacer
gagcttgataactgggaagcgatac	Protospacer
******** ************* .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1265126 : 1272522

Streptococcus_phage(50.0%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021673864.1\|1265126_1265804_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	1.3e-89	69.3
WP_002959124.1\|1265811_1266972_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	2.6e-151	68.8
WP_002959125.1\|1267089_1269243_+	LTA synthase family protein	W6LM83	Streptococcus_phage	9.4e-264	68.5
WP_002959127.1\|1269507_1270125_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002959130.1\|1270293_1270608_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_002959132.1\|1270724_1271045_-	phosphoribosyl-AMP cyclohydrolase	A0A2H4UVM0	Bodo_saltans_virus	2.6e-08	30.8
WP_002959135.1\|1271041_1271800_-	imidazole glycerol phosphate synthase subunit HisF	A0A2H4UVM0	Bodo_saltans_virus	2.8e-05	24.7
WP_002959136.1\|1271802_1272522_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	A0A2H4UVM0	Bodo_saltans_virus	2.8e-10	24.8

DBSCAN-SWA_2

1874052 : 1924720

Staphylococcus_phage(36.36%)

transposase,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002960303.1\|1874052_1874988_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.2e-10	38.1
WP_002960305.1\|1875289_1877674_-	primosomal protein N'	NA	NA	NA	NA
WP_002961559.1\|1878459_1878777_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002961561.1\|1878799_1879414_-	guanylate kinase	NA	NA	NA	NA
WP_002961563.1\|1879624_1880569_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_002961565.1\|1880598_1881288_+	DUF1129 family protein	NA	NA	NA	NA
WP_002961569.1\|1881717_1881957_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_002961571.1\|1882014_1882497_-	single-stranded DNA-binding protein	A0A191KBQ2	Streptococcus_virus	7.4e-60	73.9
WP_002961573.1\|1882508_1882799_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_002961575.1\|1883253_1883925_-	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_169447861.1\|1884090_1884267_-	hypothetical protein	NA	NA	NA	NA
WP_080651904.1\|1884727_1884901_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_019771033.1\|1884920_1885106_-	hypothetical protein	NA	NA	NA	NA
WP_019769835.1\|1885188_1885362_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_019769836.1\|1885383_1885569_-	hypothetical protein	NA	NA	NA	NA
WP_002963416.1\|1885862_1886054_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002963417.1\|1886355_1886580_-\|bacteriocin	garvicin Q family class II bacteriocin	NA	NA	NA	NA
WP_002961554.1\|1887950_1888874_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_109821385.1\|1888888_1891195_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	6.8e-42	27.7
WP_019769622.1\|1891667_1891841_-	hypothetical protein	NA	NA	NA	NA
WP_002963027.1\|1892975_1894097_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002963029.1\|1894368_1894797_+	YjdF family protein	NA	NA	NA	NA
WP_004205609.1\|1895268_1896312_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_002998870.1\|1896511_1896826_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	6.0e-18	47.3
WP_004205606.1\|1897130_1897334_-	copper chaperone CopZ	NA	NA	NA	NA
WP_004205604.1\|1897374_1898271_-	cation transporter	NA	NA	NA	NA
WP_019781432.1\|1898297_1900535_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.1e-96	34.0
WP_002998634.1\|1900535_1900982_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_004205595.1\|1901129_1901828_-	hypothetical protein	NA	NA	NA	NA
WP_004205594.1\|1901811_1902495_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-21	31.8
WP_004205591.1\|1903270_1903624_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_028798536.1\|1904240_1906958_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	2.8e-18	24.9
WP_019769944.1\|1906976_1907279_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA
WP_002962538.1\|1907271_1907568_-	YlxR family protein	NA	NA	NA	NA
WP_019770726.1\|1907582_1908899_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_080651900.1\|1909080_1909557_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_028798535.1\|1910027_1911629_-	hypothetical protein	NA	NA	NA	NA
WP_002960061.1\|1912413_1913049_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002960058.1\|1913049_1913841_-	phosphotransferase family protein	NA	NA	NA	NA
WP_002960056.1\|1914186_1915233_-	ABC transporter permease	NA	NA	NA	NA
WP_002960055.1\|1915235_1915961_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.3e-27	30.7
WP_002960053.1\|1916238_1916658_+	HIT family protein	NA	NA	NA	NA
WP_002960051.1\|1916654_1916945_+	hypothetical protein	NA	NA	NA	NA
WP_002960048.1\|1917131_1918367_-	LCP family protein	NA	NA	NA	NA
WP_002960047.1\|1918375_1918888_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002960046.1\|1918880_1919321_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002960044.1\|1919494_1920913_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.9e-43	31.9
WP_019773382.1\|1922004_1922940_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.1e-87	54.3
WP_019769970.1\|1923419_1923689_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_019773382.1\|1923784_1924720_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.1e-87	54.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage