CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483404	Corynebacterium renale strain NCTC11140 chromosome 1	5 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	0	13	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483404_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483404_1

238364-238509

Orphan

Consensus_repeat	Method
AACTTAACACCTAACTTCACACATGTGTTGAGTAAGTGGGAAGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483404_1

>merge|NZ_LS483404|1|238364-238509|CRISPRCasFinder
AACTTAACACCTAACTTCACACATGTGTTGAGTAAGTGGGAAGCTGAGTGGGAAGCTCGACCCCGAAAAGAACATATTACCTGCTAGAAATGCACTTTCGAACTTAACACCTAACTTCACACATGTGTTGAGTAAGTGGGAAGCTG

>NZ_LS483404|1|1|238364-238509|CRISPRCasFinder
AACTTAACACCTAACTTCACACATGTGTTGAGTAAGTGGGAAGCTG	AGTGGGAAGCTCGACCCCGAAAAGAACATATTACCTGCTAGAAATGCACTTTCG
AACTTAACACCTAACTTCACACATGTGTTGAGTAAGTGGGAAGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483404.1\|WP_111725289.1\|234038_234242_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NZ_LS483404.1\|WP_048381270.1\|247362_247710_+\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|240572
NZ_LS483404.1\|WP_098388890.1\|239163_240357_-\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
NZ_LS483404.1\|WP_111725287.1\|232270_232924_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_LS483404.1\|WP_111725298.1\|246312_247353_+\|septum-formation-family-protein	unknown	unknown	gnl\|CDD\|379393
NZ_LS483404.1\|WP_111725294.1\|240509_242483_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|128941
NZ_LS483404.1\|WP_111725290.1\|234243_235035_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_LS483404.1\|WP_111726849.1\|249484_250153_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_LS483404.1\|WP_111725299.1\|248532_249411_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NZ_LS483404.1\|WP_111725296.1\|244085_244994_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_LS483404.1\|WP_111725286.1\|226892_227780_-\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NZ_LS483404.1\|WP_111725297.1\|244990_246241_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_LS483404.1\|WP_111725292.1\|236935_238357_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NZ_LS483404.1\|WP_111726847.1\|236683_236857_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NZ_LS483404.1\|WP_111725291.1\|235031_236135_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|235528
NZ_LS483404.1\|WP_111725295.1\|242539_243409_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_LS483404.1\|WP_111725293.1\|238689_239163_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_LS483404.1\|WP_172607367.1\|230747_232271_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|237797
NZ_LS483404.1\|WP_111726843.1\|227789_229256_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	unknown	unknown	gnl\|CDD\|380024
NZ_LS483404.1\|WP_111725288.1\|232914_234042_+\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092

Protein	Function_ID	Function_description	E-value
NZ_LS483404.1\|WP_111725289.1\|234038_234242_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	4.21361e-15
NZ_LS483404.1\|WP_048381270.1\|247362_247710_+\|metallopeptidase-family-protein	gnl\|CDD\|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	3.63833e-42
NZ_LS483404.1\|WP_098388890.1\|239163_240357_-\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	0
NZ_LS483404.1\|WP_111725287.1\|232270_232924_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	4.39578e-64
NZ_LS483404.1\|WP_111725298.1\|246312_247353_+\|septum-formation-family-protein	gnl\|CDD\|379393	pfam13845, Septum_form, Septum formation. This domain is found in a protein which is predicted to play a role in septum formation during cell division.	4.79843e-96
NZ_LS483404.1\|WP_111725294.1\|240509_242483_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|128941	smart00701, PGRP, Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.	1.71142e-41
NZ_LS483404.1\|WP_111725290.1\|234243_235035_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	2.59218e-145
NZ_LS483404.1\|WP_111726849.1\|249484_250153_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.32766e-13
NZ_LS483404.1\|WP_111725299.1\|248532_249411_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	7.31171e-117
NZ_LS483404.1\|WP_111725296.1\|244085_244994_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.68126e-52
NZ_LS483404.1\|WP_111725286.1\|226892_227780_-\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	6.00905e-76
NZ_LS483404.1\|WP_111725297.1\|244990_246241_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_LS483404.1\|WP_111725292.1\|236935_238357_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	9.8208e-66
NZ_LS483404.1\|WP_111726847.1\|236683_236857_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	2.43494e-13
NZ_LS483404.1\|WP_111725291.1\|235031_236135_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|235528	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.	3.67929e-145
NZ_LS483404.1\|WP_111725295.1\|242539_243409_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.53908e-62
NZ_LS483404.1\|WP_111725293.1\|238689_239163_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.2182e-22
NZ_LS483404.1\|WP_172607367.1\|230747_232271_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	0
NZ_LS483404.1\|WP_111726843.1\|227789_229256_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	9.76258e-11
NZ_LS483404.1\|WP_111725288.1\|232914_234042_+\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	2.80848e-94

>NZ_LS483404.1|WP_111725292.1|236935_238357_-|putative-DNA-binding-domain-containing-protein
MTAEELEDVVAKLRALGESADVEVKSNVGKSILETLSAFANGAGGLIVVGLEEKSGFQPVSDFDPQAAQDALITRGEQLTPAVRPFIQILPFEDSLVVAARVAPADERPCYVTARGLYKGSYVRTGEAERPLTRYEVDRLLEEHKQPTWDDEPVERAVFDDLDPHLVKPYLRSQRNQRPRTFQDGEDVAMQRLRILDGDHPTLAAVLAMGAYPQEFFPRLTLSFALVPGTEIGDSSDGLRFEDNATFTGTIPELVEAGVQAVRKNMRTASVVGDVYRKDLPDYPLAAVREALVNAHMHRDYSPEARGSQVQILMFADRLEITNPGGLYGGVTVDNLGQPGVTSSRNQRLSSFLEQLQFEEGGPIAENRGSGIAVIEKALAEVLMPPPEFINTLTHFKVVFRKRRVIAEERHGTAVDQVHDLLGRKESWSTVELVEATGLSRTAVQRAINTLLEKGKAQRTEPNRSPRQRYRLA
>NZ_LS483404.1|WP_111726847.1|236683_236857_+|helix-turn-helix-transcriptional-regulator
MNLTQEDVAELALVSERFIRDFEQGKNTVRMDKVEAVLNVLGLDLAAVQHIPEALRR
>NZ_LS483404.1|WP_111725291.1|235031_236135_+|ThiF-family-adenylyltransferase
MSLPDNELRRVARQTLLPGFGLAQQEALHDAHVLIIGAGGLGCPVAQALAATGVGTISIIDDDTVDLTNIHRQILFTAGDVGRPKVDAAAERLRGHQPGITVNPIRDRLTAANAVEKLGGVDLLIDGSDTFATKYLAADAAELTGTPLIWGSVLRFRGDVALWWSGGQADRGVGLRDLYPTQPDPASAPDCATAGVLGVTTSVVGGLMATEAVKFLAGMDSAVPGRLLMYDALSANIRQFHVAADPARELVTSLDAHSCAGPACGVSSGVLSLLDSGAACVLDVREPAERLIDPIRVDAPVLALPTSIWERDPFAVESLLASVPKHDVVVVCASGVRSQRFVDAFADDAAARGLRLFSLPGGVQGLK
>NZ_LS483404.1|WP_111725290.1|234243_235035_+|thiazole-synthase
MLSIAGKEFESHLVMGTGGATSFDILEQSLKASGTQLTTVAMRRHSAHTQGGESIFQMLTRLGIDLLPNTAGCRTARDAVLTAQLAREALGTNWVKVEVIADDHTLLPDTTELLDACETLVAEDFVVLAYTSDDPVVAKRLEQVGVAAVMPLGAPIGTGLGILNPHNIELICARAEVPVLLDAGIGTASDAALAMELGCSGVLLASAINRCQDPVAMAHAMRHAVEAGRLARAAQPIPKRTHAEGALASSSFEGLASWADQVL
>NZ_LS483404.1|WP_111725289.1|234038_234242_+|sulfur-carrier-protein-ThiS
MNITVNGQARSVADGLSVAELVADVTGADQPQGVAVAVDGAVVPASKWEQVLSDGAVVDILTAVQGG
>NZ_LS483404.1|WP_111725288.1|232914_234042_+|glycine-oxidase-ThiO
MLLERSFPHVIVGAGIIGLSTAFELFSRGVPAADIAVIDPAPRSGATFAAGGMLAPCAEVQYKQEPLYPLMVESARLYPNLIARLQEYTDQDLGYRTESTFVVAADRADATHLKELTTHQQGHLFEVERLTLRQARAKEPALHPQLAGVVEIPGDHQINPRMYSAALLAVLQERGVAFVEKQATALTCEDGRVTSVKCGDLRVGVSDTAYLCNGLGAAQVTGWYPGEKNPLQLRPVRGDMLRLRVPEGHEPPVGRVIRGFVEDRPIYIIPRTDGTIAVGATSREDARRGPAVDGVFTLLRDAIRIVPGLEDCEFIEAITGDRPGTPDDMPYLALWGENLVISTGYFRHGILLSALGAHVGADLGLNRTTEYTEAL
>NZ_LS483404.1|WP_111725287.1|232270_232924_+|thiamine-phosphate-synthase
MHDLDLRCYFVTGRLPDTGGEFEQIARVAAQAAAGGAGVVQVRSKPITVRELTDLAIRVAAAVHEANPGTMVLIDDRVDIAAALMGEHHIHGVHIGQDDLRPDLARKVLGPEAIIGLTTGTLDLVRGAAEFADCLDYVGAGPFRPTPTKDSGRPPIGLEGYPELVAASPVPVVAIGDVHAADAADLARTGVAGVAIVREFMHSPDPQEMARNIVACF
>NZ_LS483404.1|WP_172607367.1|230747_232271_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MHTYTFVPNSGQNAGSIPRVLSIAGTDPTGGAGIQADIKSITAAGGFAYSVTTALVAQNTTGVQEIHTPPVDFLKAQLRSVADDVAIDAVKIGMLGTTEITQAIAEFIAAIPCPVVLDPVMIASSGDRLLDAHAEAAVLDLAKHADLLTPNLPELAVLVGAEPATTKAEGIAQATKLARQLNAHVLMKGGHFTGEAADNALVSPDGAVTDVPVYRVDTENTHGTGCSLSSAIATRLAAGHTPADAVRWASRWLHEAILHADDLHIGTGHGPVDHSHTARRMVRQASPSTWAPSTSAPTEPILPAAGPYTQQLWERTAGYLTDTLNLPFIQQLGAGTLRTEDFLFYLHQDSLYLGKYAIALTQLGGQWAQDANNAIAAEHEMQATWLKGRQPATMSRVTQGYTDFLLASVFSREAAVGQAAVLPCYWLYYEVGAHLEAQNHPEHPYHNWLATYGGEEFKASVTGAIARVEEAIAASPELFEDALHAFDLASRFEVEFFAQADTAWVVR
>NZ_LS483404.1|WP_111726843.1|227789_229256_-|SpaH/EbpB-family-LPXTG-anchored-major-pilin
MSSRKTLAIALSAGLILSGTAGFGAAESFAQTGGDQTQANEAQYSLTIVKRAGQEETVQDYEGGQIDKEKRPANDPTPGDGFKFKVEKVTPDAKDKENAAAATYVEGDFSMELTTEDDGQVKFENLPAGVYRVTETKVPDDSGFVAGKPFLVSVPYTKKDGTGIISDVFVYPKNTQVGIEKEVVDADKHGGQDYTYVIKSAIPAPATGESLVGYTVEDVLNDQLRKPQTKDVKVKLGTDWKNGADVDPKYYSVTTQDQKVTVTFEEDGLKFLAKNTDKQVLTQITTTAPADIQEIPNKSTLIFDNGSGAGDVRKDSNEVKTYWGKLNIKKVADNGTTPLQGAEFQIVRCEGSGDNYTQVADTQPLTVNRKNKWTTNKNGQLTITGIHASHFENNGDVNPVKTYCAQETKAPTGFKLDKKLIPFVLTAEGKTKFADTDIAKPYEYGLTIKNTSNDRFLPNTGGMGITIIALLSLAVIAGGVLLARRNAA
>NZ_LS483404.1|WP_111725286.1|226892_227780_-|class-C-sortase
MSVKQGVSKHARKPKKSFLSRVGLPALIIVVGIVGLLYPVIATQFNNRVQEQVAREYEEHLLDTPEQQLSDAVAEARRYNETQLGGPILDPWLARVAKDNPAYQAYLEQLSGMPAMAQVVVPAIDVRLPVYHGTQESTLQKGLGHLYGTALPVGGEGTHSVITGHTGLTNATLFDDLDQVKVGDAIYVSTFGERLKYEVRQIDIVLPNEVDALGPVPGKDLLTLITCTPYGVNTHRILVHAERVPLDAEEASVLDEETSPVQWWMWLLGAIALVVVIGLLWWIYREQQKQRKLDA
>NZ_LS483404.1|WP_111725293.1|238689_239163_-|phosphatase-PAP2-family-protein
MPVFDQAVILWTGLFTPELNLLWVLIAVGLARRAPGGFRVGALVGVAAASLSCTVLKRVFGRERPPEELALIIETNASFPSGHATAAGALVGIALVTRRPWLIALAVVHAVVIGWTRLYVGVHWLSDVMAGWILGAVVAYVVCRLMMRLWGRDSARF
>NZ_LS483404.1|WP_098388890.1|239163_240357_-|UDP-galactopyranose-mutase
MSSYDLIVVGSGFFGLTVAERAASQLDKKVLVVERRNHIGGNAYSEAEPETGIEVHKYGAHLFHTSNERVWEYVNKFTDFTGYQHRVFAMHDGTAYQFPMGLGLINQFFGRYYSPDEARELIKEQTAGMDPKDATNLEERGIALIGKPLYEAFIKHYTAKQWQTDPTDLPASIISRLPVRYTFDNRYFTDTYEGLPVEGYTAWLENMAAHENIEVRLDTDWFEVRDAIRADNPDAPVVYTGPLDRYFDYTEGHLGWRTLDFEQEVLNTGDFQGTPVMNYNDADVPYTRIHEFRHFHPERSEYPKDKTVIMKEYSRFAEQGDEPYYPINTPEDRAKLEAYRRLAATEAADNKVLFGGRLGTYQYLDMHMAIASALTMFDNKLVPYFEDGVALSQERGH
>NZ_LS483404.1|WP_111725294.1|240509_242483_+|N-acetylmuramoyl-L-alanine-amidase
MQQKRRLTAARPKPVAATVLAAALAVTAAFGGNKILNTDGPDAGNIEVLNESVSFDSGSNVLVDDPAIATQGDGSEGTARTVKEFTRDEEFSQFALTWYGERDIAAFVRAEMPDGSWSPWYDMDPQDSGYINPNGINGTELIYHEPTHKVQVSTANIDYAGAEEGTDVDLPDTEQPAEEAPVPAEAPAPVNYDDIKPVADSDTGISAVFIDGNAEEGGIAPVQYSDAYGMPKVVSRSGWGAGAKNCSVDYAEPVSAITIHHTAGSNNYTPAQSAAQMRGYWNYHANTLGWCDIGYHALVDKYGTIYEGRAGGMNKGVIGAHAGGFNSNTWAISMMGNYTTTPPSQAMLKSVGELAGWRASVAGFHPQGSGTHYSEGSSYTFVPYGQAKTLPNIFAHRDVGYTTCPGDAAYAQMGTIRSIATQKYNAINAGTAGTTTTTATTTTTPPAVSNQVTTTTTPPPAPGGTPNVAQSSAPGGLSLSGIVNAIQSGDVAAIAGVVGTIAVVALTWAIKNGHLDLSKLGLNGNTEVLGGVSLKDIPPVVDKVAAFSSDSQLSQLWSQNRGTLGHVLGAARGPIGETSQGVAYQAFDNGIMVGNEETGPRALWGAIGDAWAQQGFDLGPLGLPLNEEHQWNGLVKVDFQGGNITWNPETNEVKINR
>NZ_LS483404.1|WP_111725295.1|242539_243409_-|HAD-family-hydrolase
MEPVTAPTPAQRPAEKPLLIASDIDGTFITSADRVTPRLRDVVMRARREGAEIALVTGRPHRWLYPVLDQLPFRPVCITANGAVMFDSATEEIVTRHELAPQTMRDVVKQARKALYDATSGSLALAVERVGADAFASDEECFAVTKEYVHTWAAGGFAVETDEEITSQPAVKLLLRNPDMTAPEMHRIIAPWIDPEQAHVTYSMNEGLLEVAVPGVNKALGVRALCELHDVPRERTVAFGDMANDIEMLEWVNFGVAMGNANPEVKAVADYVGPSNDENGVAEVLEWWF
>NZ_LS483404.1|WP_111725296.1|244085_244994_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MNYKLIDGFRTPTYYKEIADHAEAREPFYGRRILPLAKRLMRAQNIEVTVTGAEFIPAEGGALLAVNHTGYYDFILGGIPAYLRGRRLVRFMAKKSIFEVPVVGAMMRKMGHLPVDRSAGASSVEEAVARLRGGELVGIFPEGTISRSFELQDFKTGAARIAHEAGVPLVPVVIWGSQRIWTKGLKKNLGRSFKPVMIRVGAPIPLSGDPAEDTALLKEAMDYELGLVRAEYEKEYGPHPELAGWVPAAMGGGAPTIDEAKSHRRRRAGAAEGLALALWLLCVCALVCPWLRGFVTRGFTLL
>NZ_LS483404.1|WP_111725297.1|244990_246241_-|serine--tRNA-ligase
MIDLKFLRDNPEVVRESQRTRGEDPELVDLLLAADEDRREAIRVADELRGEQKAFGKKIGQAAPEERPALLEGADQLKARVKDAEEAQKRAEDKVTEIQFKLSNIVEGAPAGGEDDYVVLEHVGTPREFDFEPKDHLDLGESLGLIDMKRGTKVSGARFYYLTGDGAMLQLGMLMHAAKIARERGFQLMIPPVLVRPEIMAGTGFLGEHSDEIYYLERDDLYLVGTSEVALAGYHRDEIIDLSAGPIKYAGWSSCFRREAGSYGKDTRGILRVHQFDKLEMFVYAKPEDATRIHQELLAMEKEMLAAIEVPYRVIDTAGGDLGSSAARKFDTEAWIPSQQTYRELTSTSNCTTFQARRLSTRYRDENGKTQVAATLNGTLATTRWLVAILENHQQEDGSVVVPEALRPYVGKDVLR
>NZ_LS483404.1|WP_111725298.1|246312_247353_+|septum-formation-family-protein
MTSPSEGSAGFDGPLSNELPARSTTWRSAQGVRALFVGAAVAAVFGISFGAFSGGDTTTASSAETTTTTQTLDVAPFTTADQGACLTWDITETGDVSNFQQAACEQPHRFEVSTRENLGTYPSSEFGANAPMPDVTRQAQLREELCRTATINYLDGHFDPVGKYSIASILPPAEWWAQGDRTMLCGVQSTNDTGNPQLTRGEAGKQDQSRVAEAGQCVAVDKAQAMHIVDCGQDHQLEVTALVNLAPVFPDHTPSIEEQDNHLRGVCTQAAIDYLGSEEALYRSTLQPFWTTQGADSWDAGSRSANCALVFAAQGGFATLTGSAPQMLIDGQPPAPQPDRRPLREG
>NZ_LS483404.1|WP_048381270.1|247362_247710_+|metallopeptidase-family-protein
MVQVSQERFEEMIDDALDNITDEFAQHMRNVVILAHDRNPDDPTLLGLYEGVPLPERTFDHTGFLPDAIFIYKEALEDICTSEEQLAHEVYVTVMHEVGHFFGLDEDDLHRLGYE
>NZ_LS483404.1|WP_111725299.1|248532_249411_-|prephenate-dehydratase
MSTVAYLGPQGTFTEAALIHFFGDCQQLPVSSPLAAVEAVRSGEADRAVLAIENSVDGAVTPAFDALARGGVQIIGEHDIAIEFAIMTRPGFTGSVRTFATHPVGYQQVKGWVADNMPEAVFHPASSNAEAARQVSEGLIDAAAAPARAADIYGLSIIADGVADHTGATTRFVAVAPVCTPPARTGHDRTSVTFTLPDAPGTLVGALSEFAARGVDLSRIESRPTRERFGEYLFYVDLVGHIDDAPVAEALRAVYLRTEHLQFLGSWPAADTSVRAGFEEADAWVDAARGEA
>NZ_LS483404.1|WP_111726849.1|249484_250153_+|CPBP-family-intramembrane-metalloprotease
MSGVRALFRLIDALASPTALSEQTVALNPTQSAFPWLDLALQLCSAATLFAWGGLALFLLAGDGIRLPRSPRDLVWGAGLAALIGIPGLGFYVAAVHLGLSKQVIPAALTHPGWEIPILLVWSAANAFGEEIVVVAWLMTRLRQLRWSPWAAIAASAVLRGSYHLYQGVSAGVGNIIMGVIFGYVFYRTGRVWPLIVGHFLIDAVAFVGYAAVGGDLSWLGL

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Crispr_ID: NZ_LS483404_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483404_2

488156-490318

TypeI-E

I-E

Consensus_repeat	Method
GGCTCATCCCCGCGTGTGCGGGGAACAC	CRISPRCasFinder
GGCTCATCCCCGCGTGTGCGGGGAACAC	CRT
GGCTCATCCCCGCGTGTGCGGGGAACAC	PILER-CR
GGCTCATCCCCGCGTGTGCGGGGAACAC	PILER-CR

35 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NZ_LS483404_2

>merge|NZ_LS483404|2|488156-490318|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TATCTATCCCTGCATGCGCGGGGAACACCCCACAGAAGAAGACCGGCGTACCGCGATGGGGGCTCATCCCCGCATGTGCGGGGAACACTTCGGCTGGTTTTCGATGATGTCGAAGGCTTCGGGCTCATCCCCGCATGTGCGGGGAACACAGCGCCTAGGCGCTTATAGTCGCTTACTACCTGGGCTCATCCCCGCATGTGCGGGGAACACACTACGGCCTTGACACCCGCGCGGTATTCGCCGGGCTCATCCCCGCATGTGCGGGGAACACGTCTCCATCATGATTTGCAGATTCGTAGAGTGCGGCTCATCCCCGCATGTGCGGGGAACACGCGTCGAGCGCGGCGACCGTCTCAAGGTGCGAAGGCTCATCCCCGCATGTGCGGGGAACACTCGCGTGCGAGGTAAACCCTCTTACTGTTTGACGGCTCATCCCCGCGTGTGCGGGGAACACTCACGCTACACCACCCCCGTTTTTAGGTTGGTGGGCTCATCCCCGCGTGTGCGGGGAACACCCCGCTTTTCTTTTCAGGGGAGATTATGGAGGAGGCTCATCCCCGCGTGTGCGGGGAACACCGGATACCCCAACGGGGTGGGCTGGCCCTCCGGTGGCTCATCCCCGCGTGTGCGGGGAACACTCATGGTGGAAGACATCGACGGCGGGGAACCGGGGCTCATCCCCGCGTGTGCGGGGAACACTTCGGCGAGTGTCCGGCACAGGTATGTGAGGTGGGCTCATCCCCGCGTGTGCGGGGAACACGTTGGTGTTCCTTTCTTCCCCACTTTTCTATTAGGCTCATCCCCGCGTGTGCGGGGAACACTACCTGGCCAAGTCCGATCAGAACGCGCTGAAAGGCTCATCCCCGCGTGTGCGGGGAACACCGGCATCTGATGGGCTCCACGCCTCGACTGTGGGGCTCATCCCCGCGTGTGCGGGGAACACGTTCGGCGCCACGGTTGCCGATGTGATTTGTTGGGCTCATCCCCGCGTGTGCGGGGAACACATAAAGGGAGATGACACGCCCATGAGCGAGCTGGGCTCATCCCCGCGTGTGCGGGGAACACGCTGTGCGAGGGGTGTCCGGTGCGTTTTGAGTGGGCTCATCCCCGCGTGTGCGGGGAACACCCATATCGCTTGACAGTGGCGCGCGCTTAATGCGGCTCATCCCCGCGTGTGCGGGGAACACCCCCTTTTTTTCACCCAAAACACCCTCATCGTCGGCTCATCCCCGCGTGTGCGGGGAACACACTGCGATGGTGCCCAACTTCGTGCCCGCACCCGGCTCATCCCCGCGTGTGCGGGGAACACACCGACGTCACCTGCGCGTCCTCGCGCACCATCGGCTCATCCCCGCGTGTGCGGGGAACACGACACACCACTCAACAAAAAAGCAGCTTTCCAAGGCTCATCCCCGCGTGTGCGGGGAACACCCGTAGTAGGTGCCGGTGCGGGTGGTGATGGTGGGCTCATCCCCGCGTGTGCGGGGAACACCCTGCATGTCTTTCACCTCCACTTTTTGAGCAAGGCTCATCCCCGCGTGTGCGGGGAACACAACCTCCAGCAGGGCGGGCATATCATGGTGTGGGGCTCATCCCCGCGTGTGCGGGGAACACATCGGTAATCGATTGGCTCCGCTCCGCGATTGAGGCTCATCCCCGCGTGTGCGGGGAACACCATTGATTTGTAGGGTCATGTTGTAGGGGAACAGGCTCATCCCCGCGTGTGCGGGGAACACGCGGCTCCGTCGGCAAACGCAAGATTCACACAAGGCTCATCCCCGCGTGTGCGGGGAACACGAGTGCTCCGCCGAGCGTGAGGGCGTGACTGTGGGCTCATCCCCGCGTGTGCGGGGAACACGAAGTGCTACGCGGTGCCGGCGTTGTGACGACGGGCTCATCCCCGCGTGTGCGGGGAACACGTGAGAAACGGACTTTGGACCCTGATTCTGAGGGGCTCATCCCCGCGTGTGCGGGGAACACTGCGGCGCGAGTTCGTCCTGTGCCACGCCCATGGGCTCATCCCCGCGTGTGCGGGGAACACGCGCCGGGTGGTTGGGCGGTGTTTGCGTAGTGTGGCTCATCCCCGCGTGTGCGGGGAACACCCCGTTCTTGAAGACGGCATGGAGTTCCACAAGGGCTCATCCCCGCGTGTGCGGGGAACAC

>NZ_LS483404|2|2|488156-490318|CRISPRCasFinder
TATCTATCCCTGCATGCGCGGGGAACAC	CCCACAGAAGAAGACCGGCGTACCGCGATGGG
GGCTCATCCCCGCATGTGCGGGGAACAC	TTCGGCTGGTTTTCGATGATGTCGAAGGCTTCG
GGCTCATCCCCGCATGTGCGGGGAACAC	AGCGCCTAGGCGCTTATAGTCGCTTACTACCTG
GGCTCATCCCCGCATGTGCGGGGAACAC	ACTACGGCCTTGACACCCGCGCGGTATTCGCCG
GGCTCATCCCCGCATGTGCGGGGAACAC	GTCTCCATCATGATTTGCAGATTCGTAGAGTGC
GGCTCATCCCCGCATGTGCGGGGAACAC	GCGTCGAGCGCGGCGACCGTCTCAAGGTGCGAA
GGCTCATCCCCGCATGTGCGGGGAACAC	TCGCGTGCGAGGTAAACCCTCTTACTGTTTGAC
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCACGCTACACCACCCCCGTTTTTAGGTTGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGCTTTTCTTTTCAGGGGAGATTATGGAGGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGATACCCCAACGGGGTGGGCTGGCCCTCCGGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCATGGTGGAAGACATCGACGGCGGGGAACCGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TTCGGCGAGTGTCCGGCACAGGTATGTGAGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTGGTGTTCCTTTCTTCCCCACTTTTCTATTA
GGCTCATCCCCGCGTGTGCGGGGAACAC	TACCTGGCCAAGTCCGATCAGAACGCGCTGAAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGCATCTGATGGGCTCCACGCCTCGACTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTCGGCGCCACGGTTGCCGATGTGATTTGTTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATAAAGGGAGATGACACGCCCATGAGCGAGCTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCTGTGCGAGGGGTGTCCGGTGCGTTTTGAGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCATATCGCTTGACAGTGGCGCGCGCTTAATGC
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCCTTTTTTTCACCCAAAACACCCTCATCGTC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACTGCGATGGTGCCCAACTTCGTGCCCGCACCC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACCGACGTCACCTGCGCGTCCTCGCGCACCATC
GGCTCATCCCCGCGTGTGCGGGGAACAC	GACACACCACTCAACAAAAAAGCAGCTTTCCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCGTAGTAGGTGCCGGTGCGGGTGGTGATGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCTGCATGTCTTTCACCTCCACTTTTTGAGCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	AACCTCCAGCAGGGCGGGCATATCATGGTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATCGGTAATCGATTGGCTCCGCTCCGCGATTGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CATTGATTTGTAGGGTCATGTTGTAGGGGAACA
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGGCTCCGTCGGCAAACGCAAGATTCACACAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	GAGTGCTCCGCCGAGCGTGAGGGCGTGACTGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GAAGTGCTACGCGGTGCCGGCGTTGTGACGACG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTGAGAAACGGACTTTGGACCCTGATTCTGAGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TGCGGCGCGAGTTCGTCCTGTGCCACGCCCATG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGCCGGGTGGTTGGGCGGTGTTTGCGTAGTGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGTTCTTGAAGACGGCATGGAGTTCCACAAG
GGCTCATCCCCGCGTGTGCGGGGAACAC

>NZ_LS483404|2|1|488156-490318|CRT
TATCTATCCCTGCATGCGCGGGGAACAC	CCCACAGAAGAAGACCGGCGTACCGCGATGGG
GGCTCATCCCCGCATGTGCGGGGAACAC	TTCGGCTGGTTTTCGATGATGTCGAAGGCTTCG
GGCTCATCCCCGCATGTGCGGGGAACAC	AGCGCCTAGGCGCTTATAGTCGCTTACTACCTG
GGCTCATCCCCGCATGTGCGGGGAACAC	ACTACGGCCTTGACACCCGCGCGGTATTCGCCG
GGCTCATCCCCGCATGTGCGGGGAACAC	GTCTCCATCATGATTTGCAGATTCGTAGAGTGC
GGCTCATCCCCGCATGTGCGGGGAACAC	GCGTCGAGCGCGGCGACCGTCTCAAGGTGCGAA
GGCTCATCCCCGCATGTGCGGGGAACAC	TCGCGTGCGAGGTAAACCCTCTTACTGTTTGAC
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCACGCTACACCACCCCCGTTTTTAGGTTGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGCTTTTCTTTTCAGGGGAGATTATGGAGGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGATACCCCAACGGGGTGGGCTGGCCCTCCGGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCATGGTGGAAGACATCGACGGCGGGGAACCGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TTCGGCGAGTGTCCGGCACAGGTATGTGAGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTGGTGTTCCTTTCTTCCCCACTTTTCTATTA
GGCTCATCCCCGCGTGTGCGGGGAACAC	TACCTGGCCAAGTCCGATCAGAACGCGCTGAAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGCATCTGATGGGCTCCACGCCTCGACTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTCGGCGCCACGGTTGCCGATGTGATTTGTTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATAAAGGGAGATGACACGCCCATGAGCGAGCTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCTGTGCGAGGGGTGTCCGGTGCGTTTTGAGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCATATCGCTTGACAGTGGCGCGCGCTTAATGC
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCCTTTTTTTCACCCAAAACACCCTCATCGTC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACTGCGATGGTGCCCAACTTCGTGCCCGCACCC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACCGACGTCACCTGCGCGTCCTCGCGCACCATC
GGCTCATCCCCGCGTGTGCGGGGAACAC	GACACACCACTCAACAAAAAAGCAGCTTTCCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCGTAGTAGGTGCCGGTGCGGGTGGTGATGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCTGCATGTCTTTCACCTCCACTTTTTGAGCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	AACCTCCAGCAGGGCGGGCATATCATGGTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATCGGTAATCGATTGGCTCCGCTCCGCGATTGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CATTGATTTGTAGGGTCATGTTGTAGGGGAACA
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGGCTCCGTCGGCAAACGCAAGATTCACACAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	GAGTGCTCCGCCGAGCGTGAGGGCGTGACTGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GAAGTGCTACGCGGTGCCGGCGTTGTGACGACG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTGAGAAACGGACTTTGGACCCTGATTCTGAGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TGCGGCGCGAGTTCGTCCTGTGCCACGCCCATG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGCCGGGTGGTTGGGCGGTGTTTGCGTAGTGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGTTCTTGAAGACGGCATGGAGTTCCACAAG
GGCTCATCCCCGCGTGTGCGGGGAACAC

>NZ_LS483404|2|1|488216-490318|PILER-CR
GGCTCATCCCCGCATGTGCGGGGAACAC	TTCGGCTGGTTTTCGATGATGTCGAAGGCTTCG
GGCTCATCCCCGCATGTGCGGGGAACAC	AGCGCCTAGGCGCTTATAGTCGCTTACTACCTG
GGCTCATCCCCGCATGTGCGGGGAACAC	ACTACGGCCTTGACACCCGCGCGGTATTCGCCG
GGCTCATCCCCGCATGTGCGGGGAACAC	GTCTCCATCATGATTTGCAGATTCGTAGAGTGC
GGCTCATCCCCGCATGTGCGGGGAACAC	GCGTCGAGCGCGGCGACCGTCTCAAGGTGCGAA
GGCTCATCCCCGCATGTGCGGGGAACAC	TCGCGTGCGAGGTAAACCCTCTTACTGTTTGAC
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCACGCTACACCACCCCCGTTTTTAGGTTGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGCTTTTCTTTTCAGGGGAGATTATGGAGGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGATACCCCAACGGGGTGGGCTGGCCCTCCGGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCATGGTGGAAGACATCGACGGCGGGGAACCGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TTCGGCGAGTGTCCGGCACAGGTATGTGAGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTGGTGTTCCTTTCTTCCCCACTTTTCTATTA
GGCTCATCCCCGCGTGTGCGGGGAACAC	TACCTGGCCAAGTCCGATCAGAACGCGCTGAAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGCATCTGATGGGCTCCACGCCTCGACTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTCGGCGCCACGGTTGCCGATGTGATTTGTTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATAAAGGGAGATGACACGCCCATGAGCGAGCTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCTGTGCGAGGGGTGTCCGGTGCGTTTTGAGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCATATCGCTTGACAGTGGCGCGCGCTTAATGC
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCCTTTTTTTCACCCAAAACACCCTCATCGTC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACTGCGATGGTGCCCAACTTCGTGCCCGCACCC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACCGACGTCACCTGCGCGTCCTCGCGCACCATC
GGCTCATCCCCGCGTGTGCGGGGAACAC	GACACACCACTCAACAAAAAAGCAGCTTTCCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCGTAGTAGGTGCCGGTGCGGGTGGTGATGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCTGCATGTCTTTCACCTCCACTTTTTGAGCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	AACCTCCAGCAGGGCGGGCATATCATGGTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATCGGTAATCGATTGGCTCCGCTCCGCGATTGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CATTGATTTGTAGGGTCATGTTGTAGGGGAACA
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGGCTCCGTCGGCAAACGCAAGATTCACACAAGGCTCATCCCCGCGTGTGCGGGGAACACGAGTGCTCCGCCGAGCGTGAGGGCGTGACTGTGGGCTCATCCCCGCGTGTGCGGGGAACACGAAGTGCTACGCGGTGCCGGCGTTGTGACGACGGGCTCATCCCCGCGTGTGCGGGGAACACGTGAGAAACGGACTTTGGACCCTGATTCTGAGGGGCTCATCCCCGCGTGTGCGGGGAACACTGCGGCGCGAGTTCGTCCTGTGCCACGCCCATGGGCTCATCCCCGCGTGTGCGGGGAACACGCGCCGGGTGGTTGGGCGGTGTTTGCGTAGTGTGGCTCATCCCCGCGTGTGCGGGGAACACCCCGTTCTTGAAGACGGCATGGAGTTCCACAAG
	GAGTGCTCCGCCGAGCGTGAGGGCGTGACTGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GAAGTGCTACGCGGTGCCGGCGTTGTGACGACG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTGAGAAACGGACTTTGGACCCTGATTCTGAGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TGCGGCGCGAGTTCGTCCTGTGCCACGCCCATG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGCCGGGTGGTTGGGCGGTGTTTGCGTAGTGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGTTCTTGAAGACGGCATGGAGTTCCACAAG
GGCTCATCCCCGCGTGTGCGGGGAACAC

>NZ_LS483404|2|2|489925-490318|PILER-CR
	TTCGGCTGGTTTTCGATGATGTCGAAGGCTTCG
GGCTCATCCCCGCATGTGCGGGGAACAC	AGCGCCTAGGCGCTTATAGTCGCTTACTACCTG
GGCTCATCCCCGCATGTGCGGGGAACAC	ACTACGGCCTTGACACCCGCGCGGTATTCGCCG
GGCTCATCCCCGCATGTGCGGGGAACAC	GTCTCCATCATGATTTGCAGATTCGTAGAGTGC
GGCTCATCCCCGCATGTGCGGGGAACAC	GCGTCGAGCGCGGCGACCGTCTCAAGGTGCGAA
GGCTCATCCCCGCATGTGCGGGGAACAC	TCGCGTGCGAGGTAAACCCTCTTACTGTTTGAC
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCACGCTACACCACCCCCGTTTTTAGGTTGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGCTTTTCTTTTCAGGGGAGATTATGGAGGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGATACCCCAACGGGGTGGGCTGGCCCTCCGGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	TCATGGTGGAAGACATCGACGGCGGGGAACCGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TTCGGCGAGTGTCCGGCACAGGTATGTGAGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTGGTGTTCCTTTCTTCCCCACTTTTCTATTA
GGCTCATCCCCGCGTGTGCGGGGAACAC	TACCTGGCCAAGTCCGATCAGAACGCGCTGAAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CGGCATCTGATGGGCTCCACGCCTCGACTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTTCGGCGCCACGGTTGCCGATGTGATTTGTTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATAAAGGGAGATGACACGCCCATGAGCGAGCTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCTGTGCGAGGGGTGTCCGGTGCGTTTTGAGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCATATCGCTTGACAGTGGCGCGCGCTTAATGC
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCCTTTTTTTCACCCAAAACACCCTCATCGTC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACTGCGATGGTGCCCAACTTCGTGCCCGCACCC
GGCTCATCCCCGCGTGTGCGGGGAACAC	ACCGACGTCACCTGCGCGTCCTCGCGCACCATC
GGCTCATCCCCGCGTGTGCGGGGAACAC	GACACACCACTCAACAAAAAAGCAGCTTTCCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCGTAGTAGGTGCCGGTGCGGGTGGTGATGGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCTGCATGTCTTTCACCTCCACTTTTTGAGCAA
GGCTCATCCCCGCGTGTGCGGGGAACAC	AACCTCCAGCAGGGCGGGCATATCATGGTGTGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	ATCGGTAATCGATTGGCTCCGCTCCGCGATTGA
GGCTCATCCCCGCGTGTGCGGGGAACAC	CATTGATTTGTAGGGTCATGTTGTAGGGGAACA
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGGCTCCGTCGGCAAACGCAAGATTCACACAAGGCTCATCCCCGCGTGTGCGGGGAACACGAGTGCTCCGCCGAGCGTGAGGGCGTGACTGTGGGCTCATCCCCGCGTGTGCGGGGAACACGAAGTGCTACGCGGTGCCGGCGTTGTGACGACGGGCTCATCCCCGCGTGTGCGGGGAACACGTGAGAAACGGACTTTGGACCCTGATTCTGAGGGGCTCATCCCCGCGTGTGCGGGGAACACTGCGGCGCGAGTTCGTCCTGTGCCACGCCCATGGGCTCATCCCCGCGTGTGCGGGGAACACGCGCCGGGTGGTTGGGCGGTGTTTGCGTAGTGTGGCTCATCCCCGCGTGTGCGGGGAACACCCCGTTCTTGAAGACGGCATGGAGTTCCACAAG
	GAGTGCTCCGCCGAGCGTGAGGGCGTGACTGTG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GAAGTGCTACGCGGTGCCGGCGTTGTGACGACG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GTGAGAAACGGACTTTGGACCCTGATTCTGAGG
GGCTCATCCCCGCGTGTGCGGGGAACAC	TGCGGCGCGAGTTCGTCCTGTGCCACGCCCATG
GGCTCATCCCCGCGTGTGCGGGGAACAC	GCGCCGGGTGGTTGGGCGGTGTTTGCGTAGTGT
GGCTCATCCCCGCGTGTGCGGGGAACAC	CCCGTTCTTGAAGACGGCATGGAGTTCCACAAG
GGCTCATCCCCGCGTGTGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483404.1\|WP_111725436.1\|493500_495201_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_LS483404.1\|WP_111725433.1\|484485_484812_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|310261
NZ_LS483404.1\|WP_111725440.1\|501170_501365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111726883.1\|490709_493439_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_LS483404.1\|WP_111725432.1\|478428_481443_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_LS483404.1\|WP_111725439.1\|499916_501110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111726881.1\|483524_484163_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|376885
NZ_LS483404.1\|WP_111725427.1\|472964_473198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111725435.1\|486712_488032_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349924
NZ_LS483404.1\|WP_048378678.1\|496990_497713_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LS483404.1\|WP_111725429.1\|474835_475078_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379188
NZ_LS483404.1\|WP_111725437.1\|495193_495829_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_LS483404.1\|WP_048378684.1\|499350_499692_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_LS483404.1\|WP_111725430.1\|475091_477176_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_LS483404.1\|WP_111725428.1\|473181_474843_+\|DUF2326-domain-containing-protein	unknown	unknown	gnl\|CDD\|378384
NZ_LS483404.1\|WP_048378677.1\|495854_496991_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LS483404.1\|WP_098388830.1\|498415_499354_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LS483404.1\|WP_111725434.1\|484865_486641_-\|beta-glucuronidase	unknown	unknown	gnl\|CDD\|236657
NZ_LS483404.1\|WP_111725431.1\|477172_478432_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341155
NZ_LS483404.1\|WP_111725438.1\|497709_498414_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050

Protein	Function_ID	Function_description	E-value
NZ_LS483404.1\|WP_111725436.1\|493500_495201_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.71716e-103
NZ_LS483404.1\|WP_111725433.1\|484485_484812_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	1.19666e-15
NZ_LS483404.1\|WP_111726883.1\|490709_493439_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.74385e-79
NZ_LS483404.1\|WP_111725432.1\|478428_481443_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	2.78416e-64
NZ_LS483404.1\|WP_111726881.1\|483524_484163_+\|Fic-family-protein	gnl\|CDD\|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	1.9159e-11
NZ_LS483404.1\|WP_048378678.1\|496990_497713_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.13109e-46
NZ_LS483404.1\|WP_111725435.1\|486712_488032_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349924	cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like. Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis.	3.80848e-132
NZ_LS483404.1\|WP_111725429.1\|474835_475078_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	3.90152e-14
NZ_LS483404.1\|WP_111725437.1\|495193_495829_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	3.03139e-30
NZ_LS483404.1\|WP_048378684.1\|499350_499692_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.18422e-41
NZ_LS483404.1\|WP_111725430.1\|475091_477176_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	1.61451e-61
NZ_LS483404.1\|WP_111725428.1\|473181_474843_+\|DUF2326-domain-containing-protein	gnl\|CDD\|378384	pfam10088, DUF2326, Uncharacterized protein conserved in bacteria (DUF2326). This domain, found in various hypothetical bacterial proteins, has no known function.	5.11567e-06
NZ_LS483404.1\|WP_048378677.1\|495854_496991_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.88845e-158
NZ_LS483404.1\|WP_098388830.1\|498415_499354_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.07471e-124
NZ_LS483404.1\|WP_111725434.1\|484865_486641_-\|beta-glucuronidase	gnl\|CDD\|236657	PRK10150, PRK10150, beta-D-glucuronidase; Provisional.	0
NZ_LS483404.1\|WP_111725431.1\|477172_478432_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341155	cd17266, RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) TRD2-CR2. Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) recognizes 5'... CAAGNNNNNRTC ... 3'. The RM system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example S.Sau1132ORF3780P-TRD1 recognizes CAAG/CTTG and S.Sau1132ORF3780P-TRD2 recognizes GAY/RTC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.01527e-67
NZ_LS483404.1\|WP_111725438.1\|497709_498414_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.40039e-74

>NZ_LS483404.1|WP_111725435.1|486712_488032_-|M20/M25/M40-family-metallo-hydrolase
MTLYDDTLALLQQLIRNACVNDLTADSGHEVRNADTLEEFFAAEIASGSVKVQRFEPHPGRRSVAFTVPGADETAEPLTLLGHIDVVPVDKPKWTTDPFGAEIIDGKIFGRGAMDMLFITAAQAAVTRDIARTGSPKGTLTFVGLADEEARGGLGAGWIAEHEPSAFSWKNCLSETGGSHFGDGAIGFNVGEKGAAQRRIHVHGDAGHGSTPYGKDSAVVKIGEVARRIAAIEPPVTHNSVWRGFVQSFRFDPTTEQALLDGTGNYSAFGDLAAYAHAFSHVTLAQTVLRAGGAINVMPSHAYLEMDIRPLPGQTQEEIDDLLRAGLGDLADEVEIEHLLTEPATESPTEGPLWDAIVTTTREIFPDANVVPVHATGGSDLRFARRLGGVGYGFAMHAASRNLADVNRQLHSHDEHLYLEDLELTVRAYRRVAELMLGV
>NZ_LS483404.1|WP_111725434.1|484865_486641_-|beta-glucuronidase
MLTVRETPSRSVHVLDGIWDFAIDSNDSGIEDGWFAGRLPNPQRMPVPASFNDIVTDADVRNHVGLLWYQRRVVVPRTLAGDRLILRFGSATHAATVWVNGTEVAQHTGGYLPFEADVTDVVARCAEFRLTVAVDNRLSWETIPPGYVTTDSQGRRVQNYYHDFYNYAGIHRSVKLYTRPETYVEDVTVVTDIDGTDGLVTYDVVSAGEVSVRLLDRDGAEVTRATGAIGTLRVPGAHLWAPGDGYLYTLEITAGQDVYPQTVGIRTVEVKDSQLLINGEPFYFRGYGRHEDADIRGKQHDNVMMVHDFELMKWQGANSFRTSHYPYAEEVMDYADEQGFVVIDETPAVGLNTGISGGIFGGEPLPTFSPETINERTQAAHKREIEALIARDKNHPCVVLWSIANEPESHTDAARDYFAPLVQAAREADPTRPVGYVNVMTSPADKENITDLFDVIMLNRYFGWYVQTGNLTDAEKALREELAVWIARYPGKPIIFTEYGPDTMPGLNDLYHRPWSEEYQVDMLAMFHAVFDDTPQVIGEQMWNFADFMTTPGIMRVGGNKKGMFTRDRRPKKAAYDVRTRWLAMKEEQGS
>NZ_LS483404.1|WP_111725433.1|484485_484812_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MDINKYTYQVSWSEEDQEYVATIAEFPSLSWLDADRQQAERGLLDLVAEVVADMEASGEVVPSPLGNRRYSGKFNVRTSPSLHRRLVIEASSEGISLNALVNQKLASI
>NZ_LS483404.1|WP_111726881.1|483524_484163_+|Fic-family-protein
MLLTGSLVLVLYSAGKVFDNLRSGRLAAEAFLRSGQTTGIASRADLQLLEDLKAAGYLVAQAKREGAILSADLVCEINGAMTRSAALHPGQLRTDEQQIGVRTSYGSHMPPALTMDGVREVVDKHKNTHNREGAARLFGELAKAQPFEDGNKRTALLAANVLLPGDATLVVPFDADGAGDVESTFHDLLARAYIFDETEPVARYMCRWAQPA
>NZ_LS483404.1|WP_111725432.1|478428_481443_+|type-I-restriction-endonuclease-subunit-R
MMAVSNPIDEKAFQRLIIDELVGSAGYIERSNRVFDPVWALDEELLFAFLERTQGEKLDLLRAAYNGGADATIRNKIMHKIAADGLIRSIWNGVDFDGGIQLDLVYPRPSAGFDAKSRELFDANQLSIMEEVYHKGGERIDLVIFLNGLALFTVELKCNTSASGDYRNAIAQYQTERDATTRLLTPTIGALAHFAMDTNEVYVCAELKGRESFFLPFNQGQPAGEDPHNVTGGNPHNPQGVNTSYMWEQIWTKATIFDLLYDFIYIETKRDKYGRKVGERPIFPRYQQLRAVRSVSADMLSSPLLLNYLIEHSAGSGKTKTIAWLAHKLAGLYKPGTDELLYDKVIIATDRKVVDKQLQDAVVDMAKDSGVIRVMDKNKTSADLGKALGLDPTRRKSSYRIVATTLQKFLYLSAGELAGSGKRFVVIIDEAHGSTSGKNMASINAALASGGEPDSSLDELAQFVAQGMRSSSRQANISMVGFTATPTGRTLQQFGRLNEEGNYEAFDLYCMRQAIDEGFILDVTANYTTYDAFCKIVKAVDDDPELESKAAKRKLAHMISTSEENITNKLQVMIEHFTSVVTPTLRGQAKAMIVTAGREQAARYFLAYQKMRAADMPRLGKHQALVAFTGEVDVDGKTWSEAGLNGFTDDRTAEEFDTDNYRLLIVADKYQTGFDQPKLCAMYVDKTLRGVTAVQTLSRLNRIVYDKRTFILDFTNDFEDIQSAFAPYYETTTLTDPLTISDVRETHRRLMELQILDIDDVEEYNELLAKELLTHRDKQRMWSLIDAAARTVGDMEEEEADEARRVVRNFIKQYTFLLQVMPFEDKVMHMDYNFCTSLIRAIDAGHGGGLDFDLSDKVTIEDFAVKKSGEHKNEALVAEPEVKIAKGTGSGLTENQLEKLSKIIQEWNARYGTAFDTDIAAGSLVALQATLAKDPKVQQSARVNSKNSFRHTVEEQTQGALIAGYSQNTEWHKFLLNEEEARKELIQAFSDDIFDALKAKFQKE
>NZ_LS483404.1|WP_111725431.1|477172_478432_+|restriction-endonuclease-subunit-S
MSTETMRNSGIEWIGDVPAHWEFKRLKYTSTLAGRIGWQGLTSEEYRTEGVHLVTGTDFKEGRIAWDSCVRVSEARWAEATQVQLQEGDLLITKDGTVGKVAKCVDLPGKASLNSGVMVIRHKVPMSTHFLYWVLQSPVFTGWFSDVNAGASTISHLYQADFYNFGFYVPPTVREQELVASLLDAETAKIDQAMSLLRRELETMEQLKKSLIYEAVTKGLDPTVPMRPSGVDWIGDIPEHWGVKRLKYLCKMNSGTNLTSEEISETGDYPVYGGNGIRGYYSEFNNDSSRVLVGRQGALCGNVQLGVAPFWATDHAVVVKELSGYGKKYAFYALTAMNLNRLSMAAAQPGLSVEKIVCEFSPVPPLAEQESVASALESKLVGIEAVLEKKHEQLEVLKQQRQSLIFEYVTGKRRVNEVA
>NZ_LS483404.1|WP_111725430.1|475091_477176_+|SAM-dependent-DNA-methyltransferase
MSQIDVKKQVDHVFSIANSLRGTYQADKYKDVIIPMTIIRRLECALEETKDAVCTVYEQDDSTPDAILKQVSGYPFYNTSRYTLEKLLAEPAQLHRNLKTYLEAFSPNIRMILDKNEGLDFFTQIDKMHKGSRLTGVVRKFSELDLAPERINNVAMGYMFEELIRRFSENAEAGDHYTPREVVRLLVRLGLAEGSEDLFEPGKNINVADVACGTGGMLSVAKEELAQMCPEASVYLYGQEVNPESHAICLADMLIKNQRANNIQLADTMKDDCFPGEYMRLQFVNPPFGQPWGGKDAATGVEKAVKAEHAKPFAASRFPAGLPASGDMQLLFMQHIVYKMEKNVGRACVISNGSPLFSGGTASGESQVRRWLLENDLIEAIIGLPGSLFYNTDISIYVWVLSKNKRPDRKGKVQLIDATDLWTPMRRSLGKKRRFIADDQIDQIVATYTDFAEADNCKIVDADEFIYHEYAVYQPLQRNYRIAEERIAELSKGKFSDTMHNPVKLEELRLIDPADRDSKQDKTLAALEMAEPVFEQMLQMLRENITDQTWQDSKEFIKHLRVVLADLPDHRVKQTAAQTKAMLDKIADRLSEIDKTAPIQYDRNGKVVLDPATKDIEIVALTENIEDYMEREVLPYVPDAEWADEETDKAVKTGAEIPFSRYFYQYEQPEASDVLMDRFFGLEEELADILGALR
>NZ_LS483404.1|WP_111725429.1|474835_475078_+|helix-turn-helix-domain-containing-protein
MSKRIEFDLQVRASYKPLWKLLVDKEKFKQDLREEAKLSSTTMARLNNGDNVTTDVLLRICQVLNCQIGDIVTIIPKEEA
>NZ_LS483404.1|WP_111725428.1|473181_474843_+|DUF2326-domain-containing-protein
MLVEFDSDAFFHDEQRPGPLRLKEGLNTVLGTENTENSIGKSTTLLAIDFCFGGSDYIDKAEDVVKNIGHHEIRFAFLLGGETHYFRRATDTPNAVTLCDKEYRALRTMTLEDFKGFVGTQYGLQDAGITLRQAVSNFFRIWQRKNADVDHPLLAYPRDTQADGVKRLLMLFDEYTKLQGFMAAKDEAVRELDLFNAAGRYYDFPRARNVTEVKNNTQRIEDLETERDQAGVRAGLTAKDYTSAQQAAINEVQAEREPLLRRFNQIGRQINSMRQAKGISSEVSLTKKFDSLREFFPGANIEHIESIEHFHRSIRQILDSEFKAETKQLEEERGRIQQRLDQLSARLEDLSVAPTATQADIRAYSELDRQIRSLRNANNAFHDEQRLREAKKQASEALDEASESILKDIQYKLNGAMQRIDGEITREERTPPSIQIPAIDKYSYEIENDSGTGSTQRGLISFDLAMLETTLLPAVAHDSMLVQPIEDQAFDGIAQVYARQRKQVFLAIDKISRYSEGTRQILTKSAFIHLEPGRELFGRSWSKKKKRKAKGSE
>NZ_LS483404.1|WP_111725427.1|472964_473198_+|hypothetical-protein
MRLPSKVTPYSQSTLSQFPLILKHLSNQDLSPAALYKKVKSKFADVDEFVDTLDCLFALGQIELLYPEEVLHYVGRV
>NZ_LS483404.1|WP_111726883.1|490709_493439_+|CRISPR-associated-helicase-Cas3'
MANSLWAKSGDESGYLSLTQHLVDVACAAAAVFDVWLAANVKRQLAKELGIEVEEVRTLYLWLAGVHDCGKATMTFQSQIEMTYPHIVNAVYDSGLTLEKPNLELKLPKMPHGISSGVLVSKWLQGQGLSALLARRIASTVDAHHGIASADSEARTIRLILDGYPETWKAVQDEIITAMADTLDVYPVLEKLGEVRLAQGGVAQILTGIIVIADWIASNADAFPMVVQQSQEERLKDAMALTDLTNPWTTSVPNKDMDTFYRDSFGWPDSFNAKSVQQAIVECARQLKGPALVMLEAETGVGKTEAALAAAHIIGRNTSAQGIYFAAPTMSTANGILERTIEWAKNTGARETVASMYLAHSKNQLSTQFKKLKLQNIAEDVPEHGGAVVASQWMNGKRRGLLSNIVVGTVDQVLMLALEQRYSMLRHAALAGKIIIFDEVHAYDAYTSDYLETTLEWLAYYGATVIMMSATLPANRRAALAQAYTGHRLENVPDSYPLITVGTADGYSFATPAPNPTNLRASVQVIGDSLDELENLTHELLIDGGCALIICNTIARAQDVYRTLSSAYPEKVELHHAGFMAWERSQKEDFLREQLGPKASRGDGRPDFKIVVATQVAEQSLDIDADVLITDLAPMDLIIQRAGRLHRHNRSEHDRPEPVRKPKIFIRGLTQVAPTPEIDGGAMAIYDPKILVATLLHLPKEFNRPDDIVGLVQATYSDDQPEMGEELQELWEQAKITSAQREAEAHRRSKGFRTPSPFTVKELNQLFSKVNAALSLADEEAGAAQVRDAEPTVEVIPIIQTEYGYRPLGKEMEILDENDVDYPTAFHLASSTLRLPARMTRYASDFEQVISELERNTPVSWSKHFLLKGQVALVLDEDKTARVGRFVVTYSSELGFEILSDGKKADVHA
>NZ_LS483404.1|WP_111725436.1|493500_495201_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSFNLIEEPWIICETAQGTKDIGIKSIFDGSEKVLRVVGDSPTQDYVVLRTLLAIFWRAQHQSLEGSFTNPRAYGPFEWSSWFIEKRKALLTEGRDEAVLSYLEKYRDRFDLLDHEAPFMQVADLHTKNGNTLEVSRIIPEAEHDYFTMRTGTGRASLSFAEAARWLIHAQAYDYSGIKPGVEGDPRVKGGKGYPIGTGWTGMTGGTFVRGENLLDTLLLNTTLEAIGPDAANDLPVWERKPDSSAQRVLNEADVNAAMTPEGASDLATWQSRRIRLFTEEGEVVAVLVGNGDRIPDAGKNVFGDVMTPYRFSPNQTKKGILAYYPQTYSVERTMWNSLDALLVSQMDSGFSEKLHPPKRPQTLENLSSEALVGYVDEVLDVSIVSMEYGPQSSSVGTIVSSQLGIPLHLLRSAKHSEESRQKVRNAAQTVRDAATALGSFVGQLSLAAGGDYAFNVDAADRLYTDLEPKFIAWLRGLTPENIDDECVRWESTIRRAVLEMAREHVRGAGPKALIGRLDGGEDGTGRIVNAGSLHNQLLRKLRDILPLLTNQRKKIKNEEGGTSDE
>NZ_LS483404.1|WP_111725437.1|495193_495829_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSEEQSTLRQSVGKTAARLQRQYLNSQHTADGALARGTLAELRKFASRPLDTNPLALQEVLLTLDPPLSEREVGRGDAPSPSERAAYYALSLFGIHMQSAKKPMHSNDVSFATACGQLYRVTESRSIKMRFDAMQVAGDEQSRLVHLRSLISLLRANEIACNYGQLAADLRSLSNPKYRDRVLLRWGRDFATGTLRLSARRDAEATAQEIQ
>NZ_LS483404.1|WP_048378677.1|495854_496991_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSLVIDIHALQTLPPSLINRDDTGAPKSAVFGGVSRQRVSSQSWKRAIRKDFNDRFSPELVGSRSKRLPEQIARLLEKRGDVAQADAIGRVEQLFKAAGIKTVVEKPSKKDAEDTEHNPYPQTSYLIFLSPAQVERAVTTLIEKEGEKLKKSEAQEILDTDHSADMAMFGRMVADDAAYNVDAAVQVAHAIGVHASAPEFDFFTAVDDLAEAGEETGAGMLGTVQMMSSTLYRYATVNVEGLEKNLGSQQAANETLKYFVDSFVASMPTGKINTFANQTLPELVYITVRDSRPVSLVNAFEDPVEADNDRDRRTVAADRLATEAKEVQEKYGFVPKAAYVIGLGNLADSFKEIAQEVTLPELGEKLVAEVEKLQQGAE
>NZ_LS483404.1|WP_048378678.1|496990_497713_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKHSLLLLLKGPMQSWGDESRFKTRATAPTPTKSGIIGLIAAAQGRRRTDPVEDLVELRLAIRVDQSGSLLRDYQTAQPWITKPSAPAQLVTRYFLSDAAFVAAVEADDKEFLEEIASALRKPAFPLFMGRRSCPVHPGLVIGIVDADAETALREHKEWYATRQHKRESPTEVSLAVYRDGTPQEAGGIARQDVPISFDPQHRKYGWRTVVRGEDVILENPDGKDQILGSDIFFDTVVKA
>NZ_LS483404.1|WP_111725438.1|497709_498414_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTLTRILLNPARRAGRKYLTETNALHAAVRSTFPPDIQEDEARVLWRVDSHEHTHTLYIVGPEKPTADGIVAEAGWETRPAQSADYTRFLDGLIKGQRWRFELVANPTYSERREGKRGKIKAHVSPRHQLDWLYKKADLHGFALAPRTDDEASEQERARWSALEQTGVVQRWTDVFHKNRQGGTKGNPVRIVKARFAGTLEVTDPEALRHALTHGIGRARGYGCGLMTLAPVK
>NZ_LS483404.1|WP_098388830.1|498415_499354_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MPTPQEVPITRHALAQMGDRISFLYVERAVVNRDGNALTITDKRGTAHVPATQLAALLLGPGTRITYAAMALLGDAGVSTVWVGERGVRYYASGRPPAKSSRMAIAQAEIVTNQRKRLDCARKMYGLRFPGEDVSGLTMAQLRGREGARMKKVYAQEAERTGVFWDRRSYDPNDFDSGSPINQALTAASAALYGIAHAVIAGLGFVPALGVVHTGTDRSFVYDIADLYKAEIAIPAAFDAVAAAQGTPHIEVRRKIRDAVVEKRLMQRMVSDLKYVMDIPDDDLISDAELMLWSELEVIASGINWAEEELKS
>NZ_LS483404.1|WP_048378684.1|499350_499692_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMVLVVTACPAGLRGDLTKWLMELSPGVFVGNPSARVRELLWERTVDLCKDGRALLVQSAANEQGMEFREHRHSWKPTDFDGLTLMMRPDKRSSARRTGWSNARRQRKKYNSR
>NZ_LS483404.1|WP_111725439.1|499916_501110_+|hypothetical-protein
MSVLSVTVIILGCIAVGEILSALSKARIPSILVAMLLAFVLANLGFLPYEMAMASALVAFGSWAQSAVMIHMGSLIPIGKLLVQWRPVAIAVSGIVMAAAFVLGIGTWLYGFDIAAASVGPMTGGLVATTLMNEGLQGIPDLDPMALMIPSMLLMVQCLPGMPVASTLLRRYALAHRETLTPEPGPEVGDVEDHIDEDGDLNDGHRTLIRLPDAIADNAYFALFMAVALGWVARVLEDATGVSYSLWGLAIGFIGAYIGLVPRRPLEKAGSFGIIMASLVFLVIVPLTGFTFADLASIAGILVVMMIAGFGGVFLGGAIMTKLVGWDLRLGSPVALTSTFGFPADYMISQEVVKATGRTPKEREALREQILLPMLIGGFSTVSAGAIVIVSIILSVL
>NZ_LS483404.1|WP_111725440.1|501170_501365_+|hypothetical-protein
MVWAVAYATSHFDQAYSWWHYLAGAYALAVGLATKAPWLMICAGLCMALPLLILVIGFAFFFGV

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Crispr_ID: NZ_LS483404_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483404_3

567506-567601

Orphan

Consensus_repeat	Method
GGGGCACGTTTCGCACCCAGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483404_3

>merge|NZ_LS483404|3|567506-567601|CRISPRCasFinder
GGCGCACATTTCGCACCCACGGGGCGCTACGTTCGGGTGAAACCTGGCGTGTTTGGGTGCGTTACGCGCGAAAGCGGCACGTGGTGCTCCAAGCCG

>NZ_LS483404|3|3|567506-567601|CRISPRCasFinder
GGCGCACATTTCGCACCCACGGG	GCGCTACGTTCGGGTGAAACCTGGCGTGTTTGGGTGCGTTACGCGCGAAA
GCGGCACGTGGTGCTCCAAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483404.1\|WP_172607378.1\|556095_556995_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|380141
NZ_LS483404.1\|WP_111725481.1\|560459_561401_-\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_LS483404.1\|WP_111725488.1\|576950_577850_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_LS483404.1\|WP_098389374.1\|558381_559230_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_LS483404.1\|WP_111725482.1\|562585_563614_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|179559
NZ_LS483404.1\|WP_111725479.1\|555558_556077_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_LS483404.1\|WP_048378756.1\|554653_555562_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NZ_LS483404.1\|WP_111725483.1\|563898_565257_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_LS483404.1\|WP_098389373.1\|569351_569783_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_LS483404.1\|WP_048379794.1\|559395_560463_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NZ_LS483404.1\|WP_111725486.1\|574388_575750_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_LS483404.1\|WP_048379784.1\|570206_570446_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_LS483404.1\|WP_111725487.1\|575756_576146_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_LS483404.1\|WP_111725484.1\|565332_566907_+\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|273267
NZ_LS483404.1\|WP_111726891.1\|576205_576922_-\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842
NZ_LS483404.1\|WP_048379780.1\|571512_573891_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_LS483404.1\|WP_048379796.1\|557574_558369_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NZ_LS483404.1\|WP_048379786.1\|570022_570196_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_LS483404.1\|WP_048379812.1\|568867_569341_+\|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl\|CDD\|274869
NZ_LS483404.1\|WP_111725485.1\|567876_568830_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824

Protein	Function_ID	Function_description	E-value
NZ_LS483404.1\|WP_172607378.1\|556095_556995_-\|DUF559-domain-containing-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	1.77507e-06
NZ_LS483404.1\|WP_111725481.1\|560459_561401_-\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.9875e-149
NZ_LS483404.1\|WP_111725488.1\|576950_577850_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	1.07622e-113
NZ_LS483404.1\|WP_098389374.1\|558381_559230_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	7.75735e-68
NZ_LS483404.1\|WP_111725482.1\|562585_563614_-\|histidinol-phosphate-transaminase	gnl\|CDD\|179559	PRK03321, PRK03321, putative aminotransferase; Provisional.	1.01067e-177
NZ_LS483404.1\|WP_111725479.1\|555558_556077_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	4.712e-30
NZ_LS483404.1\|WP_048378756.1\|554653_555562_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	9.11996e-52
NZ_LS483404.1\|WP_111725483.1\|563898_565257_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	5.75911e-130
NZ_LS483404.1\|WP_098389373.1\|569351_569783_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.11186e-49
NZ_LS483404.1\|WP_048379794.1\|559395_560463_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	9.67653e-39
NZ_LS483404.1\|WP_111725486.1\|574388_575750_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	2.99536e-164
NZ_LS483404.1\|WP_048379784.1\|570206_570446_+\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	7.7684e-07
NZ_LS483404.1\|WP_111725487.1\|575756_576146_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	7.41133e-13
NZ_LS483404.1\|WP_111725484.1\|565332_566907_+\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|273267	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds].	4.9858e-77
NZ_LS483404.1\|WP_111726891.1\|576205_576922_-\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	4.28001e-51
NZ_LS483404.1\|WP_048379780.1\|571512_573891_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.17932e-119
NZ_LS483404.1\|WP_048379796.1\|557574_558369_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	3.42672e-118
NZ_LS483404.1\|WP_048379786.1\|570022_570196_+\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	1.08156e-06
NZ_LS483404.1\|WP_048379812.1\|568867_569341_+\|tRNA-adenosine-deaminase-associated-protein	gnl\|CDD\|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	2.91055e-32
NZ_LS483404.1\|WP_111725485.1\|567876_568830_-\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	1.33353e-102

>NZ_LS483404.1|WP_111725484.1|565332_566907_+|DASS-family-sodium-coupled-anion-symporter
MSTPEIKESSSHALGEDDVAAAGNENGRKVTGLFAGLALAIIIYLIFPESAVERVLELEPESEYSYEAMRITAATAVLMGVWWMTEAIPLAATALVPLVAFPLSQVIGFGKISASYAEPTIFLFMGGFILALGMQRWNLHRRLALSVVLLVGVQPKRLILGFMVATGFLSMWVSNTATAVVMLPIGMSVLQLTAETVGGMRKQKNFATVLMLAIAYSASIGSLGTIIGTPPNALLVAYMRNTHDIEIGFGQWMLVGVPMAVLFTIIAWFVLCLVFPPEMDTIPGGRELIRAEVKKMGKMSTAEILTAIVFGGAALGWIFIPLAIDHFGWSISVADAAIGLAASLLLFILPSGTKKGSRLMDWETANELPWDVLLLFGGGLALSKMFSESGLSLWIGDLAQGLRVLPVFLLIAAVAFLVLALTEFTSNTATAATFLPILAGVAVGIGLNEGGEQNILLLTIPVALSATCAFMLPVATPPNAIAFGSGYVRISDMIKGGLWLNIIAVILITLVTYFLAVPVFGIVL
>NZ_LS483404.1|WP_111725483.1|563898_565257_+|magnesium-transporter
MNHSETIEHLEEILRSEEDLAPERAHELSVLLDEPPIQDIIELIERITTTRGAMLMRLLSRERAIEVFDALDAAHQADLIGALQNADVVNFFGALDPDDRVSLLDELPAEIAERLMRDLPRGERAVTDVVLGYPKGSVGRRMSPEVPELFVDQTVREALTYLRTHADDVETIYLLPVVERDRRLAGVCSLRDLFKADEDALLGTVIGTAVKAAAHADAEETARWFLPLDYLAMPIVDDSDRLVGILTFDDAQDIVEEEDSEDSARAGGSEPLQQPYLATPLRKIVRSRVVWLLVLAVSAILTVQVLDSFEATLEKAVVLSLFIPLLTGTGGNAGNQAATTVTRALALGDVRKRDILTVMWRELRVGLMMGLLLGVLGVALASIVYGPQIGLVIGLTLLAVCAMAATVGGAMPIIAKTVGADPAVFSNPFISTFCDATGLIIYFLIAKSVLGI
>NZ_LS483404.1|WP_111725482.1|562585_563614_-|histidinol-phosphate-transaminase
MIRPDLNAIPDYVQGKPAAADAVKLSSNEVTFQPLPAAAQAMADAAAHANRYPDMGAHELRTALGQRLNLPVEQIAVGTGSSALCQQLVQITSTPDSEVIFPWRSFEAYPIFVRVVGATPVAIPLTASGHNDLEAMAAAITERTSLIFVCNPNNPTGTTITNDAFLKFMEAVPSHVIVALDEAYFEFSRAADSPNAAELLDRFPNLVGLRTFSKAYGLAGVRVGYAFGPAPVISALNKVAVPFGVSSVAQAGALASLEARSELAARVQETIDVRDSVSDALGAGKTQANFVWIPASEREPYSLAEAFAEHGVIVRAFPEGVRITVTNASETSRLLEAWEAIK
>NZ_LS483404.1|WP_111725481.1|560459_561401_-|NAD(P)H-quinone-oxidoreductase
MLAYEVVNKELVRTERPRPEPKSGEVLVEVAGVGVNRGDVLQVAGHYPPPPGVTDIPGLECSGTILDAGDTNMEVGQKVSCLLAGGAYAEYVAVPAGQVAPIPEPLTTIEGGSIIEVAATVWSNLGMVAGLREGHRVLIHGGAGGIGSFAIQLCAALGAEVAVTAGSQEKLDYCASLGATTLINYKEEDFAERLKGSCDIILDIMGAKYLAGNIRSLADDGQLVIIGLQGGTRAEINLGALLPKRLSIHGRTLRARSLEDKAEIVRSTVENVWPLLAEGKIVHHSRTLPFEEAARAHELLTSGANTGKLVLEV
>NZ_LS483404.1|WP_048379794.1|559395_560463_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MASFDVPSVRGLYVTLGDGWTYLNAHENPLVPERVSVGIARAARSVTAPVRTEDGWVTRADVLRDQARKAVADFAGVAPGQVVLGATVGELYGALVRAMGPLMRHGGSMVLTRGDAHAGGDVRFAQFTDGILDPAQYSKLVNGGTRLVALPAAHPLFGSVQPVGEIVDAARAKSRSWVLIDATAYAPYRRFDMDAWGADIVAMNLGAMGGPDLAALIFRNERMFSRMRNLDVPPVSGILAGGVAPTLAHYTTLFDAGLETRMRELAGDLTTFIGSLPAVEVESVPREWEVGEALDRTPRITFTIKGVPAETIQQRLVDNGMMAGFNADGSITVAAGPYTQNHDIEHLTRVVASLA
>NZ_LS483404.1|WP_098389374.1|558381_559230_-|ABC-transporter-permease
MTSPPGDHAPASDSMTVRAAWHDLSRGFKQHELWLQLGWQDIKQRYKRSVLGPLWITIATGVMALALGLLYSVLFKVPLDVFLPHVTVGLIFWTFISGCIKEGSDVFIDNEGLIKQLPSAISIHAYRLVWKQTLFLAHNLVIWLILMLIFPENWSWNVLLAIPAMFVLVVNGVWVALFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTTTLRENMADMGSRAHLAQLNPLYHYLEIVRAPLIGQPLNPNSWWVVLGCTVVGLLLTLLAMKKWRFRVPYWV
>NZ_LS483404.1|WP_048379796.1|557574_558369_-|ABC-transporter-ATP-binding-protein
MAQVSIDTHNACVDFPIFDAKSRSMKKAFLGAAGGMIGRNASNTVVVEALRNINLHLREGDRVGLVGHNGAGKSTLLRLLSGIYEPTRGSAIVRGRVAPVFDLGVGMDPEISGYENIIIRGLFLGQTRKSMRRKIDDIAEFSELGEYLNMPLRTYSTGMRVRLALGVVTSIEPEILLLDEGIGAVDAAFMAKARVRLQELVERSGILVFASHSNDFLAQLCNTALWVDHGEIRKAGLVADVVEAYEGPEAGAHMRRLRAEIEGA
>NZ_LS483404.1|WP_172607378.1|556095_556995_-|DUF559-domain-containing-protein
MQNIRPKRPLTYTKNIAILFDMGELFTRKEVKQSTKSIYALRKAVASGEVIRIMQGWYTKSCTTPLGLARELCRKIPDFVLAGDSAEQLFSGQELTFPIQGYVKHSRRAVSNEFVVTTRKRTVQSFTYNEVRVVTGYQKLIFDGHSSGVERLYSGRSGAQKMRLHQREHPRKRKRADTILKRYGADSGAELKVANLLRKLGFEPEHNYLIGGYAFDLVLPKKKIAIEINSWEFHSERGQFVADHVKGNEAVVRGWTVLRFSGSDVAHHLGYVSEILQEILKKRKRRFRPLVWRWHLGAN
>NZ_LS483404.1|WP_111725479.1|555558_556077_-|VOC-family-protein
MENLDHIVIAGPDLGELIDWFEELTGVRAIPGGRHDHGTENALVPLAEPKGAYVELIAAAKKPVEQNFFDVNGVKEPTPAAWAIHPDDLDAYAKEHGKGVVDMQRTAPDGTVLKWRLITPEVAPISTEPFAIDWGETPHPSQSGEAILRLESLEIKDDRIAVTFEGCATIGA
>NZ_LS483404.1|WP_048378756.1|554653_555562_-|glycosyltransferase-family-2-protein
MSVAPIPERPSVAAVIVTHQRVELLRRSLEMVAGQSYPVDHIIVVDNGAQPEVRELLESIAPESGVYLESRTNLGGGGGFAYGFLHALALGVDAIWCADDDGHPADTNVLETLVRTAHAHRLHEVSPVVCNIQDPQRLAFPMRQGLTWKRRRDELEGEFLEGYASLFNGALFSAAAMQVIGVPDYRLFIRGDEVEYHRRLQRSGLRFGTALTTAYVHPDGSDEFKPILGGRMHTQYPDSESKRYFTYRNRGYLMNQPGMRRLLPQEYARFGWYFLVQQKDPKGFVEWLKLHRLGRKEQFYRP
>NZ_LS483404.1|WP_111725485.1|567876_568830_-|prephenate-dehydrogenase
MISAKLSRPVAILGLGLIGGSLLRDLHAAGAPAYGWNRSPLDTSFDVTDSLEDTLRRAARDDALIVLATPMPAISSLLDALTVHAPTAVFTDVVSVKGAVYDLVRERGLSDNYVGGHPMAGTAESGWDASQTGLFEDAAWVVTYDHALEACSPRWTQAFSDVIHLANLVGAHAIPALAARHDSAVARISHLPHLLAEALALVGDAGGPLALSLAAGSFRDGTRVAGTAPDLVRAMCENNSDALLGALDEALAILQDARVALAGGSVSELAVDGNAAYERYRARGAGSRPVFRLLPGEEGWVSQLQLAEQQGARIHVM
>NZ_LS483404.1|WP_048379812.1|568867_569341_+|tRNA-adenosine-deaminase-associated-protein
MSASSFAVCLVRADNRWLASRFDLAAPEKFVQAAAAHVAGLRSEGPALALAAIEDDFFVIIRPQPGGAKLYISDALAATYDDYAQAVLDAMDAEVPEVDNIDDADPWPDGDDDILSDLGLSDQVLDVIAGDADAWASEQIDQILEELGVDASLDAIR
>NZ_LS483404.1|WP_098389373.1|569351_569783_+|nucleoside-deaminase
MGRALDVARATPPADVPVGAVIFDPSGREIAAATNRRETDSDPTAHAEVLAIRHACAVLHDGWRLENCILVVTLEPCVMCAGTIAAARLGGIVYGAFEPKTGAVGSVWDVLRDGHSLHTPQVRAGVREEECAELMRSFFARHR
>NZ_LS483404.1|WP_048379786.1|570022_570196_+|CsbD-family-protein
MGDISNKAEELKGKAKDAYGDVTDDKSTQAEGKLEEAGAKIKDAASDAADKVKDVFN
>NZ_LS483404.1|WP_048379784.1|570206_570446_+|CsbD-family-protein
MSDISNKVDDLKGKAKEATGEVTDNKDLQNEGKAEQLVSDVKDKLTEAGETVKEKANEVLGKIQDKLDDDNEKPEQPQA
>NZ_LS483404.1|WP_048379780.1|571512_573891_+|MMPL-family-transporter
MAEMLFKLGRWCFHKGWLVLTVWLVIFAGMAAAAFTFMKPFTSQFSISNTPSIQTMEMLTKNFPEQGNPVNAASVNVVFQAPEGEKLTDPENKEAIDKVIHALEHNLGDDLTNTQRFGNPVELSPKLQQVVYDTYVEQGLPEETAKEDAANLAMLSDDQTIAYTTFDFDVPTSMDVTDEHRAAVNDAMQAGRDAGIRVEAGGPGFGDPIQIKATSEVVGIAVAFIILIFTFGSLVAAGLPVITALIGVGIGLFIILLTTHFVELNDVTPTLAMMIGIAVGIDYALFIVARYRAELARLKRPEAAGMAVGTAGSAVVFAAVTVIVALAALSVAGIGFLTAMGLLAAVTVFIALLVALTLVPALLGIFNTKIFAVSVPRVGNPDPKTAMGRRWVKFVHKAPGLIVAAVVVALGALSYPVTHLEMALPSDSTSNVDTTQRQSADLMEEGFGAGVNAPLLMVVDAHGVDPESTALAPLIDAQMSAGGDVDKQDAAQLAAFMYAVDQVDGMADLKNAQIAGINKDGTAAQILVTPTTGPADQETVQVSHALRDRAAEISDATGAQVGLTGLTAVQMDITETLAKAMPPYLGIVVGLCIVLLLMVFRSVLVPVVAGVGFLLSVGAAFGLTVLVWQEGLWDLVNTPAPLISFMPIFLIGVTFGLAMDYQVFLVSRMREYYSHSGGQASGRTPYNAVEESVIEGFSQGARVVTAAALIMIAVFVAFIDQPLPFIQIFGFSLGAAVLFDAFFIRMALMPAAMFLMGRATWWMPRWLDKILPHVDVEGEGLERQLREGKLPA
>NZ_LS483404.1|WP_111725486.1|574388_575750_+|tRNA-guanosine(34)-transglycosylase-Tgt
MTAHENPATNPAPNPAPNNTTNPAPNNTTNPTPAPHAQDTTFELGTEVFNEPGKHGRTGVIHTPHGAIQTPAFIPVATKATVKTLTPEQIQATGAQAILSNAYHLYLQPGHDIVDEAGGVAAFENWHGPTYTDSGGFQVMSLGVGFKKVLAMDTAGLTDADIRAQKKERMAVVDEDGVDFRSILDGSKHRFTPEVSMQIQHGLGADIMFAFDELTTLVDTREYQEQSVARTHRWAQRCIDEHNRLTQERVGKPLQSLWGVVQGAQYEDLRRQATRGLVALSDAAEAEGRRGFGGFGIGGALEKENLGTIVGWVCDELPVEKPRHLLGISEPDDLFTAIEAGADTFDCVAPTRLGRRGGVYTLDGRMNLTNARFKRDFRGIDEELGGYVSENYSRAYIRHLLKANEFLAGTLCTMHNLYFMVGLVDKIRAAMEAGDYEAFRDEFMGRYYAGKAR
>NZ_LS483404.1|WP_111725487.1|575756_576146_-|helix-turn-helix-domain-containing-protein
MSPHALPNGNIIVPPHVVAEAQRVVQQSPHSLTLHDAHGDTIEVGSEVEKLLTHVLESLASDGHATVTQLPETLTSTTAADILGVSRPTLMKWAGAGRIPSTKVGTHTRFSRADVLRLKETREAEYFAE
>NZ_LS483404.1|WP_111726891.1|576205_576922_-|queuosine-precursor-transporter
MQKVETHSGSGEGAAAKAAASGKAQFIPVQKSYYPVVMTLFAAVFVISNINATKGVEIGPLVTDGAFFLFPLAYVLGDVLSECYGFRAAKRAVITGFVAAIIAVVSFYIAIALPAASFWDGQEAFEGVLGLVPQIVLASLAGYLVGQLLNAWVLVAIKKRTGEKSLWARLIGSTVVGEFADTLLFCAIAAPVIGIATGGDFINYVVVGFVWKTAIEVVIMPLTYLVIGWVKKREGYAA
>NZ_LS483404.1|WP_111725488.1|576950_577850_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MTIGRYAPSPSGDLHVGNLRTAVLAWLFALHDDGTFHIRVEDIDTARSSAAVAERQLSDLRALGLTWAEPVVWQSQRTDAYRSALEALPVYECYCSRKDIQEASRAPHAIPGHYPGTCRDLTEGERERRRSELAEQGRVPALRLRAGVNSWEVYDLLHGRVVGEVDDMILRRGGRLPEGVEPDWAYNLAVVVDDAYQGVDQVVRGDDLLSSAARQAYLAHLLGLPAVDYVHVPLVLGPTGARLAKRDGAVTLRDLGPAAVPEVVAWIASSVGVPGATTLAELQSAWHPGLLPREPVTWP

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Crispr_ID: NZ_LS483404_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483404_4

1275065-1275226

Orphan

Consensus_repeat	Method
GATCGTGGTGGCTACCGTGGTGGTCGTGATCGCGATGATCGTGGCGGACGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483404_4

>merge|NZ_LS483404|4|1275065-1275226|CRISPRCasFinder
GGACGTGGCGGTTACAGGGGTGGACGCGACCGCGATCGTGGTGGCTACCGTGGTGGTCGTGATCGCGATGATCGTGGCGGACGTGGTGGCTACGGGGGTGGACGTGATCGTGATCGTGGTGGCTACCGTGGTGGTCGTGACCGCGATGATCGTGGCGGACGT

>NZ_LS483404|4|4|1275065-1275226|CRISPRCasFinder
GGACGTGGCGGTTACAGGGGTGGACGCGACCGCGATCGTGGTGGCTACCGT	GGTGGTCGTGATCGCGATGATCGTGGCGGACGTGGTGGCTACGGGGGTGGACGTGATCGT
GATCGTGGTGGCTACCGTGGTGGTCGTGACCGCGATGATCGTGGCGGACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483404.1\|WP_111725892.1\|1278516_1281627_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NZ_LS483404.1\|WP_053072823.1\|1262902_1263556_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111725887.1\|1266748_1268374_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|274331
NZ_LS483404.1\|WP_111725893.1\|1281630_1282593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226729
NZ_LS483404.1\|WP_048380511.1\|1263945_1264707_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111725898.1\|1287883_1288081_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_LS483404.1\|WP_111725894.1\|1282653_1283793_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223497
NZ_LS483404.1\|WP_172607451.1\|1259166_1262913_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LS483404.1\|WP_111725890.1\|1275973_1276615_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_LS483404.1\|WP_098389299.1\|1271128_1272712_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_LS483404.1\|WP_111725889.1\|1275359_1275860_-\|DUF2269-domain-containing-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111725884.1\|1255327_1259044_-\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	unknown	unknown	gnl\|CDD\|237030
NZ_LS483404.1\|WP_111726988.1\|1268370_1269906_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_LS483404.1\|WP_111725896.1\|1286526_1287057_-\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
NZ_LS483404.1\|WP_111725895.1\|1283807_1286432_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274008
NZ_LS483404.1\|WP_111725886.1\|1265382_1266747_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LS483404.1\|WP_048380690.1\|1270073_1271108_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_LS483404.1\|WP_111725891.1\|1276664_1278230_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_LS483404.1\|WP_145961658.1\|1264752_1265271_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111725897.1\|1287240_1287762_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759

Protein	Function_ID	Function_description	E-value
NZ_LS483404.1\|WP_048380690.1\|1270073_1271108_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	4.20924e-102
NZ_LS483404.1\|WP_111725887.1\|1266748_1268374_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|274331	TIGR02868, ABC_transporter_ATP-binding_protein, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.	7.33896e-143
NZ_LS483404.1\|WP_111725898.1\|1287883_1288081_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.27858e-22
NZ_LS483404.1\|WP_111725894.1\|1282653_1283793_+\|metallophosphoesterase	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	1.27628e-27
NZ_LS483404.1\|WP_172607451.1\|1259166_1262913_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.08388e-147
NZ_LS483404.1\|WP_111725890.1\|1275973_1276615_-\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	5.78877e-15
NZ_LS483404.1\|WP_111725897.1\|1287240_1287762_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	9.18916e-12
NZ_LS483404.1\|WP_098389299.1\|1271128_1272712_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	1.48786e-179
NZ_LS483404.1\|WP_111725884.1\|1255327_1259044_-\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0
NZ_LS483404.1\|WP_111725892.1\|1278516_1281627_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	2.98436e-117
NZ_LS483404.1\|WP_111725896.1\|1286526_1287057_-\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	3.31846e-56
NZ_LS483404.1\|WP_111725895.1\|1283807_1286432_+\|AAA-family-ATPase	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.49579e-11
NZ_LS483404.1\|WP_111725891.1\|1276664_1278230_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_LS483404.1\|WP_111725893.1\|1281630_1282593_+\|hypothetical-protein	gnl\|CDD\|226729	COG4279, COG4279, Uncharacterized conserved protein [Function unknown].	5.35413e-53
NZ_LS483404.1\|WP_111725886.1\|1265382_1266747_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.47939e-68
NZ_LS483404.1\|WP_111726988.1\|1268370_1269906_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	2.98763e-128

>NZ_LS483404.1|WP_098389299.1|1271128_1272712_-|cytochrome-ubiquinol-oxidase-subunit-I
MDVLDISRWQFGITTVYHYLFVPLTIGLGPLVALMQTFWQKTGHPYWYRATRFFGTVFLVNFAMGVATGIVQEFQFGMNWSEYSRMVGDVFGGPLALEALIAFFLESVFLGVWIFGWGKVPGWLHTLSIWIVAIATNISAYFIIVANSFMQNPKGAVYNPETGRAELNDIAALLFNKTAIYGYLHAAAGAFLVGGTFILGVSCWWLVRANKQAKAGGWHQDSPEVARHDMHRPVIKMGIWATLLSCVAVAFTGDLQAKLMFIQQPMKMAAAESLCHTQTDPAFSILSTSTHNNCETVQHLIEVPFVLPFLAEGKFTGVTLEGVMELQEKMEALYGPGNYSPNLFVTYWSFRAMIGFMLGSILLVIFAWWYTRKGQVLEGKKGLWFGRLSLFAIATPFLANIFGWVFTEMGRQPWIVHPNPDSVGDPRTELIRMTVGEGVSAHSATYVWITIIGFTGLYLALYIVWFLLIRRAVIAGPPAEDGPTGDAVTGSGQHPAPGPATPVAGDQPAEIEPVRFSTAAPVITDEK
>NZ_LS483404.1|WP_048380690.1|1270073_1271108_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MELPIIWFILIAVLFAGYFLLEGFDFGVGILAPMIGKNRKERNTIVGTIGPVWDGNEVWLITAGGAMFAAFPEWYATLFSGFYIPLFLILLCLIIRIVALEWRKKMDDPRWTKWCDWGLAIGSWGPAILWGVAFANILRGLPIQADHTLLASDAMATIFNPYGIMGGITFTALFTFHGLAFIRLKTAGIVRERTENFVWPVSILAAVTGVVFIVWTVLSLENTTWTWAVAVLIVVLVVAGIVTMAMGRDGWSFTFTSVAVVAVAGLLFGILFPNVMPTTLADGTSLDVWNAASNPYTLKFMTWVAIFMVPVVLAYQAWTYWVFSKRLRAEDAMAEKENAPLKVV
>NZ_LS483404.1|WP_111726988.1|1268370_1269906_-|ATP-binding-cassette-domain-containing-protein
MKLSQPTRRWILFAGIVTALKTLCTVMLGLLVGLTVSSFIESPELPLSHYNSSLVWLLIVVIARGVLAWVETRFAERASAKVIIDLRARTLEHLAYKDPRTVDVASWRTTLSEGIEGIGPYLTGFVPALASTVIATPVMLAVIWWLDTPSLVIAVITLPLIPFFMWLVGTLTAGRTEKRLRDLAVLSDQIMDLVAGLPTLRIFGRQLSTVSEVRRLSAKHTESTMSVLKIAFLSSFVLEFLANLSVALMAVGIGFRLLDGAMTLAAGLTVLIIAPEAYNPIREVGTRFHDAQDGLAATDRILGELSQPRSQSSPGLAERGSAEDRDYSTSPLTVVFDSLSAHGRDGDRPSGLTGTAEPGAITVLAGENGSGKSTALLALLGFITEGVRGEAAVYSGETQLSHKEVWKCTAYLPQRPVLDATTVGDYAALSLGQRQRVAFATEMERETPLILCDEPTAHLDYDNALIMLDTLRQRAKSGATVVVASHDPVVLEHADRIITVQAVERETEDNR
>NZ_LS483404.1|WP_111725887.1|1266748_1268374_-|thiol-reductant-ABC-exporter-subunit-CydC
MSLASDIKAVRDARPLTGLRYSELTIPVLVGALTMLSSISLTVVSGWLITKAWEQPFVMDITVAVTAVRTLGISRAIFRYLERLASHDLALNSARRTRENAYQAMATDAAHTTMALKKGALLTRLGSDIDEVADVIVRAIVPAGTAVVTAIAAVVFAAFLSVPAAIVLAIGLLFASVVPPWLTARAVQVSEKKRAQAVEKYTTAVDHVLSNSPTLRMRGLMPEALQRAHSAATEQAESDDAGAHAQAWGSATAMWAHGVTVIGMVVLTGWLYLSGDVQTHSPQWLGMLVLLALAAFEATTGLPNAAVTVTRAAGAARRLAGFNRETTPSGNRMRTVSEAPDLVTRDLVVGFDSDVASWDIDLPFGTRKEIVAPSGYGKTTLLLTLAGLLPARSGQVLIDGHPVDTYSEESLRNSIAFSPEDAHIFATTVRDNLALGASNATDEQMYEVLNAVGLDEWVRQLPHDLSTILASGADALSGGQRRRLLLARMLLTEAPVLLLDEPTEHLDLESEAAMRDLLNSPSLPGARAQRTVVIVRHPRTR
>NZ_LS483404.1|WP_111725886.1|1265382_1266747_+|MFS-transporter
MTTPEPYEKHRQAHPDEYGDVSYPSTAQTGDSQQELHYDSGIQRVEHKPTIPGEIWVLVAAALLIAAGYGLIAPIIPQFAQSFNVGLAAAGAVVSIFAFTRLIFGPASGPLIDIFGSRKMYFTGLFVVAITTGAVAFTQEYWHVLLLRGLAGFGSTLFTVSAMGMIVRIAPPAIRGRCSSAYSSAFLLGNIVGPVVGSLMAPLGMRLPFVIYGIALLCAIVVVWWFTTGRNIRQSVPKDAAAGPTHAPSTDTQAPMSVKEAFTLTSYKAVLVSGFANGWANFGVRVATLPLYAAATFDNGGTFAAGFALASFAGGNAVCLQFSGRMADSIGRKPLIITALIVNAGFTACLGLSSSVVMFCVLSAFAGVGAGMLNPAQQAVVADVIGNDRSGGRVLAGFQMAQDFGSILGPIVVGAIAQTWSFEIGFIVTAVVGLGAALQWFAAPDTHHRTHAAQ
>NZ_LS483404.1|WP_145961658.1|1264752_1265271_-|hypothetical-protein
MFKHTESATRSEISRLEHTGIRAAILRSYHGQSLRRLATMLRHPRSLARVNPGWRPPTLHVTTPESGRLDITVSRKRVSPHARALLRDEGYDSTAAYMVQLRFTHPDGRRCARSEAEAWIRALLPDEDASKVHEITTALTPTLCWLVTASGRVVDSPADWFGTVSDGEPTAA
>NZ_LS483404.1|WP_048380511.1|1263945_1264707_+|hypothetical-protein
MSFYEDIATKLDEQGIESRVGGDVLFVPVTADFEVRFVEIDPLLPAANVYIAAADVDERDDDFSEALVSVVFSVEDAVRTVAHHVATDETVTLLRDLIEGTDERVAAVEFFQDTVDPQEVRAVLTDRSDLVVRVVVEDEAPVAHVWVETWEEEPLEVDLGAPTGTGEDSAAEPDSQLLTVDALLDLFDEPSSEVLELGTFKDFDKLFDALSLAVDHVEDWEAELVPVDDDYADFDDCGDDEFGEDFADGDANE
>NZ_LS483404.1|WP_053072823.1|1262902_1263556_-|hypothetical-protein
MLLKGLDRVMRMQGGLIEKYVARLKNKNPDATTAELQEKIDSHFLTIVSTTGAGSGGSAAIPGIGFVTGAAAVGAESLLFIDAAAWYTLASAALHGADIKDPQQREALVLLGLLGSKGTAIVDTLLIDADGTIADTANALETKNTAGLLSRFSGPALNEVNTRLVKALINRFGKSVRMAWLGKLLPLGIGAVAGLVANRKLAKTVIKHTQEALNPAH
>NZ_LS483404.1|WP_172607451.1|1259166_1262913_-|ABC-transporter-ATP-binding-protein
MRTKRHILTSAFRKRGGWLAIALLATLAAIGFDLIIPLLTGDAVDQALHAADPSHPSEPIVTASWFPGLGAITTIVILLIIAACGRFLFFFLRRWSAGHLAITVQHDLRVAILKSLHKLDGPALDRVVTGQIVSRSIADLGKAQGLISMLPLLFGFGVQLVITVVLMAQLSLQLTIISFLLLPLIIGTTLATRRWVYAATWASQQAAADVTEHVEETVTGIRVVKAFAQESKEVDTLDSLARNVYSQQLRQARIQARYQPVLNQLPNLGLVATILIGGWIVSTGGLSVGDFFAFSLYLMSMTHISRVLSGSVVRYQMGMTSIDRITEVIALEPDNPEGTRTHADDVVEKHQGPIGLKFSHVDFTADDGNQVLDDFSLSVAPGKTVGIVGPAGSGKTIAVQLAGAFYAPDNGTIALTLPDHDSKRTPTNIPYTSVQRSTIRARVACVFEEPHLFSSTIRYNVAMESPLDDEAIWEALEIAHAEEFVRKLPDGLDTVVGERGLTLSGGQRQRIALARAIAAHPDLLILDDATSAIDTTTEREIIESLRNYLHGVTLLAITHRESTLSLCETTAVLNNGHVVAVGPTQDIRDTDTYRAVMDPVYRYESTRTQLPRGEAAEPALNVLWPDGETEVGNGLDNHEHIIAGRGSVIATPELKKRVAALPPAQEQPSLDSEYLKTTRESFRLRNVFSHVRGLIVAVVVLLVIGVIADLTFPMLMKQAVDSAVGDTARTTLPSIALVGLAVVAISFGAEAIRTVLTARSGERLLYGLRLRSYAHLQRLSMDYFEKNLSGAIMTRMTTDIDNLSTFLQSSVAQAIVSISTLVGIAAMLLVTDASLTGIAALAIPVIAISTWIFRRYTKRTYAASRAQISAVNAAFQEAVAGLRTAQMYGAESGVCERFAADSDTYRKLRIKGQTATGIYFPAVNAIAQITTAFVIAAGAHQVAGGAMSAGVLVAFVMYLGQFYAPIQTLGQLYDSWLQASIGLERIRDLLGTQPSLSDEGTCENAHEAAHQELELHNVDFAYAADGPRVSRDLCVTLEPHTTVAVVGATGAGKSTLVKLLARFYDPVSGKVTAGGTALPEFPLHDWRANVAQVPQESHLFRGTIASNIAYGKPTATPEEITAAVRRIGALDIIASIPGGFQARIGERGRGLSSGQRQIIALARAELIQAPILLLDEATATLDPVTEAAVLDAADKITQGRTSVVVAHRLLTAARADRILVMSEGRIVEDGPHEALLQRRGVYHSMWSS
>NZ_LS483404.1|WP_111725884.1|1255327_1259044_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit
MSNASIFGQNQWLVDEMFQQWKQDPNSVDKEWADMFAQHGAPQASQAAGDAPRTAATTSNIRAAVKNPAQAPTANDGKGSATDRTEPVNRQPRKVRTKPESPLKDIQDLPEPGTTQLKGTFRAIAKNMDESLDIPTATTVRDMPARLMFENRAIINDHLKRTHGGKISFTHIIGWALVRATQIHPAMNVRYDIVDGKPSVTNPEHINLGLAIDLPQKDGSRALVVAAIKECETLDFKGFIDAYEDIVARSRKNKLKIDDFQGVTISLTNPGGIGTRHSIPRLTKGQGTIVGVGAMDYPAEFAGASADRLAALGVGKLVTITSTYDHRVIQGAESGEFLREISRLLIDDEFYDEIFKALEIPYAPMRWAQDVPNVGIDKNTRVMQLIESYRSRGHLIADTNPLGWKQPGLPEPDHRDLDIHTHGLTIWDLDRTFNVGGFGGKESMTLREVMSRLRAAYTRQVGSEYMHIMDNDERQWLQDRIEAGMPKPTVAEQKYILQKLNAAEAFENFLQTKYVGQKRFSLEGAEALIPLMDAAIDTAAGQGLDEVVIGMPHRGRLNVLFNIVGKPLSDIFHEFEGNMKEGQIGGSGDVKYHLGAEGQHIQMFGDGEIKVSLAANPSHLEAVDPVLVGIARAKQDLLDKGEQGFSVMPLMLHGDASFAGLGIVQETLNMMGLRGYTVGGTVHIVVNNQVGFTTTPDAGRSSYYATDLAKAYGCPVFHVNGDDPEAVVWVGQLATEYRRRFGKDVFIDLLCYRRRGHNEADDPSMTQPELYSIIDDRKSVRARYTEDLTGRGDLNKDDAEAAARDFHDQMEAVFNEVKESERSGSLEQTGITTSQELTRGLDTSITKEELVEIGQAYANVPEDFTVHRRVKPVAKKRAESSQEGGIDWGWAELVAFSSLANNGQLVRLAGEDSRRGTFTQRHAVLFDPETGEEYNPLNALAESKGKGGKFLVYNSPLTEYAGMGFEYGYSAGNLDAMVAWEAQFGDFANGAQTIIDEYVSSGEAKWGQLNKVVLLLPHGYEGQGPDHSSARIERFLQLAAEGSMTITQPSTPANYFHLLRRHALGTMSRPLVVFTPKSMLRNKHAVSSVEDFTEVKKFRSVINDTKFVDAKGNVSGDVEKVKRILLVSGKLAWELEDRRNKDERDDIAIVRIEMLHPIPFNRLKEAFDTYPNAEEIVFCQDEPANQGPWPFLNEHLPELIPDMLPMRRVSRRAQSSTATGIAKVHQAEQKALLNEIFE
>NZ_LS483404.1|WP_111725889.1|1275359_1275860_-|DUF2269-domain-containing-protein
MNTVLLILHVLTAVLFLGPVTVATSTFHTHAMKVREGNPDAVHAAGAAKVMHKITNVYGILSLLVPMFGVAIMFTDMGLYFRDGRYHLSIGLAIIAWALLFFLIIPKQRTMMGALGLKEDFEEGDQAYVINDWGKAKKQLSMFGGIFALLWVVMGIVMFLPQNFGL
>NZ_LS483404.1|WP_111725890.1|1275973_1276615_-|HNH-endonuclease
MQTSFPVRVVSFWALCLLTVIAVISTAGPLLRPRPALPRPAPVLEQTLPHVREVPQRMSVIGYEREHFGAWAPAIPEGCPMGNTRDVMLLESFPQESCTPKGLIDDPYDGDPISPHDTDIDHIFPLSAAWDMGAHSWTPEQRRAFANDPSNLVAVSSSANRQKSDKLPAEWMPSSRGARCWYARRVSYIAYSYDLELTKADKRVMESACRLIF
>NZ_LS483404.1|WP_111725891.1|1276664_1278230_-|sodium/proline-symporter-PutP
MTETTWFVIAIIIYMFTMLGIGFWSFRKTEKYDDYVLGDRGLNPFVAALSAGASDMSGWLLMGLPGALFVSGLSEMWMAVGLLCGSFASWTLIAPRLRAYSEVSSNSLTLPSFFENRVRDSSRMVRIVGAAIIIIFFVFYVSSGMVSGGRYFEATFGGDYLTGMLIIAAVTVAYTFFGGFLAVSYTDVVQGLIMFLALIVVPAMALIALDDPSDILTWPTSQDYGPWTDGVGNPEFWSIFSGVSAAAIIGNLSWGLGYFGQPHIVVRYMALRTPGEAKRSRTIGVSWMAFCLLGALATAVVGTVFFGQNPDIMVTDQKNFETIFLDMGRILFHPLIAGLVLTAVLAAIMSTMSSQLLIVSSSLVEDLLKIWNKRNLSEHLLVNLSRTAVFVVAVIAALFAFNPNDSILGLVAFAWAGFGAAFGPLMIFALYWKRLNAPGAIAGMVVGAAVSFAWGMSPLSDALYEMVPAFLASCIAIVAVSLATKEPHRTITEEFDHAISLARASAREPNADFTTLAKETS
>NZ_LS483404.1|WP_111725892.1|1278516_1281627_+|DEAD/DEAH-box-helicase
MASYLLHGLWVQHSGLHLWIEQVDGHRVVLPDTVPEGTFPATVEALLQRTTFRHRLRATLRTPKGREVALTIPTAAYTPEQAVEFLGQLTVLGEDNPAIKKAQRESIAPDLLWLIRMYAGLNRFVHAGRVTIKLAYIDDQWWPQFQLAPGLPERSWVAQMVAAAPGILTINNRNLGEDISETLPHWIAVRTLEDVRDTPRSSDWHPFVSALLHSEPLKRKVTGLLNRLNDWKNSITAADLELVIMVEAPGNDDDNPVDPRDALWPVRVRYRTGGSAPRPVDASILDWSSRQTLETALHKAVKTAPLLDASVNGQSKLYKVQFQGNPIAHLIGEDVAGDWDVYLSADEIVQFVSQDAPRLKKAGISVLLPKSWATAETTAALHAATDSDPAESPTVSKVGLDTLVEYDWSVSVDGTRLTPAEMQALIESKSGLIKVRGNWVMADTQAVSHITAYMEKLKKTSRKRWREKLASMAAEVERLKAVDDPAWQELAKELEQQREKFNSDATGGQVTVEDLRALALETVALTPVEFTGSTWYASLLGGAEPPAPSRVGLPDTVHASLREYQRRGVDWLYAMSRAGLGAVLADDMGLGKTLQLLTMLAVEHARGEKEGPTLVVVPTSVVGNWKREATKFVPDFKVLMHHGSGRLSGKEFVEATAEYDVVITSYGVVARDFATLSKVDWDHVVLDEAQHIKNSATRSSKAVRSIPARHRIALTGTPMENKLSEMRSILDFTNPGVLGSASFFRNRFAKPIEVGGDEHAMETLRRLTAPFILRRVKTDPTIISDLPEKTEEVLTVRMTPEQAALYQAYVDNIQEQLERREGMARRGLVLASLTRIKQICNHPAHFLADGSSITQRGRHRSGKVAELVRLLDDAVNNGERMLIFTQYKAFGDMLQPYLEERFSTEIPFLHGGVSQKTRDAMVERFQSPDGPLAMILSLKAGGTGLNLTAANVVVHMDRWWNPAVENQATDRAFRIGQDKDVRVYKMMTKGTMEESIQDILDGKTQLAGTVVGVGEGWITELNPDQLAQLMSYREEE
>NZ_LS483404.1|WP_111725893.1|1281630_1282593_+|hypothetical-protein
MAQHNDDTDNVIYADFGKRTRVPKPPAPEQRDSREVAGEQGDGEETPNLRQVKTSRDVYSGVDFARLVAAGKVKPNERKQQRGRITFQPAGERLFNLVTSQTDQGRIGRGRSYAADGRVLGLQILLGRIEAQVAGSQNEPFHVALNLPYRDASDIERITRTIAELPNGLARAEHGELPPELLDLLLGDEATDVTTACDCPDPTIVCKHAVAVADVAAQRMSTDPHVVFSLRGLDISQLEESLTRAAESIGQEAAASRGERFWAGRPFPSLPNPKVSPAIEESDIDLLHKAMRLVSYTSVEQLRAVADIEELYDVLTGQDS
>NZ_LS483404.1|WP_111725894.1|1282653_1283793_+|metallophosphoesterase
MTTTKFLHTSDAQIGMTRSFLDSDAQARFDDARITAIHRIGEIAAEQGCEFIVMAGDTFEYNSVSARTRGRAVDALRSLPVPTYILPGNHDPLVAGSIVAGIVAEVGSPLHCVADSDPVEVKPGVYVVGAPLLARHAADDLVARAVSDLAPSLDIRIVLGHGQAVRFGEEQTADYIDVAALEAPLRAGAFDYVALGDSHSTADVSESGAVWFSGAPETTDYMDPDARSGEIDSGNVLVVEVEKDGVGQAAVSVEKLPVGVWIFEALTRDINSESDVDSFLDELRAYENKERTVIKYALHGTVNVAEMHKLEAGLESLSPIFAALYPRQRLMQLHLEPGDEDLENLGLKGFAADALNHLIEAEETEAVNLLFRLGSAVKA
>NZ_LS483404.1|WP_111725895.1|1283807_1286432_+|AAA-family-ATPase
MIIHSVEIENFRGITHLTLGELPETGVFVISGDNEQGKSTVLEAISCALTEPHHTKKKEIKAIQPVGQSVAPTVKLRATVGEYTFTIEKRWLKAAASRLHLTAPRPAQYVDREADNELQQILENNVDRNLLDKLFISQDELDPELAAVGIPSLEKALNSQTGGDADYFASSDDDLMRAVEEEYGKYYTAKGQVKKSSELDRAESEHAAALAAKDAAVAEVKDLRTFVQEVERAHETIELNLKNEPSLVAARDNALHAVEKAKAIIAELEKARRGVDQAQEKVKYVRSEQDRLDALKTEEKARTEAVQRAHDALVEAQEAADKEAVKITELAQRVAEAREVEDRAYQELDVEKKTLKSVVEFAEFQNLRQRIAQIDEAENAITAARSALPEHPLSKKDVANLEKLHATVEVARAVLQAAQATLEFTGEGRITVDGETYEAADKPNVHLNAGSTIHIGDVTAIFSPGKNSSTTVRDELDDARTQWKRALEKAHLLSLDEAYERRSATETAEETLNQAQKAYSDAVGDIDVPQARQRCAELEQDWNGRPEPKETADAVEKRVSELEEVHRAATLTLRTAEKEREPWLEKKAASALTQANARHELAVQECERVSAQLQAMEKESDEESLAQRVAVAERNLEASRAALQEIEVAYKEVQPQEAEDRYEAAEAKLKAARQRIQDARDTVNQYQGRIEQAQGAEERQAQAEDRYAAAEAKLNSIRRQANAAKVLRTTLRAHQDAARQRYAQPFADALQEMAQPIFGADVRFNLDDTLRIVERTQGDRTVPVGDLSGGAKEQLMLLSRFAVAKLADGSSDSPVPVFIDDALGNTDTGRLNDMAMMVNRLGKKRQVFVLTCVPERFDAVANKHDYPMSLLRSK
>NZ_LS483404.1|WP_111725896.1|1286526_1287057_-|polyisoprenoid-binding-protein
MANLTGTWNLDPAHTNIGFTARHAMVTKVRGNFAEFSDKIVIGEDIKDSTIEVAIKTASVDTGNADRDAHVHGEDFFDVEKYPEMTFKATSIDVDGNEGTITGDLTIKETTKPVTLDVEIFGVEEDPFGNTRAGFEATTQINRTDFGVDFQAPLKSGGMLVSEKITIEIEGSAIKA
>NZ_LS483404.1|WP_111725897.1|1287240_1287762_+|MarR-family-transcriptional-regulator
MSTTPRWLNEEEQGLWRLMLAASRKIDRSLDETLQMGQNLSSSEFSVLVSLSEAPNEELRLRDLCTDLDWDRSRTSHQVTRMERRGLVAKCKSEGDARGVMVSLTDEGRSRLRHAAPEHVENVRRLIFDHLSAEQLDGMRTVMKQIMAVDNVPGAAGYAGGTLFERVKQEKGK
>NZ_LS483404.1|WP_111725898.1|1287883_1288081_+|PspC-domain-containing-protein
MAQTALSRKLHRFSTDKMIAGICGGIAETYGWNSTLIRVLFVLSFFLPGPQILLYAILWLVMPKF

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Crispr_ID: NZ_LS483404_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483404_5

1748026-1748124

Orphan

Consensus_repeat	Method
CCACCGCGACGGCCACCACGGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483404_5

>merge|NZ_LS483404|5|1748026-1748124|CRISPRCasFinder
CCACCGCGACGGCCACCACGGCCTCCACGGAATCCGCCGCCTGCGCCTGGGCCACCAGAGCGACCGCCCTGACCGCCACCGCGACGGCCACCACGCCCT

>NZ_LS483404|5|5|1748026-1748124|CRISPRCasFinder
CCACCGCGACGGCCACCACGGCCT	CCACGGAATCCGCCGCCTGCGCCTGGGCCACCAGAGCGACCGCCCTGACCG
CCACCGCGACGGCCACCACGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483404.1\|WP_172607416.1\|1757892_1758900_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_LS483404.1\|WP_083985923.1\|1738465_1739401_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116
NZ_LS483404.1\|WP_111726215.1\|1744417_1745419_-\|DHH-family-phosphoesterase	unknown	unknown	gnl\|CDD\|223691
NZ_LS483404.1\|WP_098389150.1\|1756053_1757556_-\|malate-dehydrogenase-(quinone)	unknown	unknown	gnl\|CDD\|377591
NZ_LS483404.1\|WP_115243654.1\|1751241_1752135_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483404.1\|WP_111726225.1\|1752216_1753977_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_LS483404.1\|WP_048379231.1\|1738102_1738372_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_LS483404.1\|WP_111726207.1\|1739502_1740528_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_LS483404.1\|WP_111726205.1\|1735592_1737923_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NZ_LS483404.1\|WP_111727055.1\|1745437_1745875_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_LS483404.1\|WP_111726211.1\|1742221_1743040_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NZ_LS483404.1\|WP_111726209.1\|1740599_1741493_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_LS483404.1\|WP_111726217.1\|1749029_1749404_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_LS483404.1\|WP_111726229.1\|1754750_1756004_+\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NZ_LS483404.1\|WP_111726233.1\|1758911_1760291_+\|mycothione-reductase	unknown	unknown	gnl\|CDD\|181142
NZ_LS483404.1\|WP_111726213.1\|1743083_1744418_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_LS483404.1\|WP_111726219.1\|1749549_1750608_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_LS483404.1\|WP_048379237.1\|1741521_1742220_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_LS483404.1\|WP_111726221.1\|1750619_1751204_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_LS483404.1\|WP_111726227.1\|1754008_1754737_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999

Protein	Function_ID	Function_description	E-value
NZ_LS483404.1\|WP_172607416.1\|1757892_1758900_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	8.11664e-37
NZ_LS483404.1\|WP_083985923.1\|1738465_1739401_-\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	6.97574e-133
NZ_LS483404.1\|WP_111726215.1\|1744417_1745419_-\|DHH-family-phosphoesterase	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	2.8697e-50
NZ_LS483404.1\|WP_098389150.1\|1756053_1757556_-\|malate-dehydrogenase-(quinone)	gnl\|CDD\|377591	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.	0
NZ_LS483404.1\|WP_111726225.1\|1752216_1753977_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_LS483404.1\|WP_048379231.1\|1738102_1738372_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	5.72608e-53
NZ_LS483404.1\|WP_111726207.1\|1739502_1740528_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	3.11442e-130
NZ_LS483404.1\|WP_111726205.1\|1735592_1737923_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_LS483404.1\|WP_111727055.1\|1745437_1745875_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.45285e-43
NZ_LS483404.1\|WP_111726211.1\|1742221_1743040_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	1.06105e-25
NZ_LS483404.1\|WP_111726209.1\|1740599_1741493_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	6.5341e-171
NZ_LS483404.1\|WP_111726217.1\|1749029_1749404_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	5.4043e-24
NZ_LS483404.1\|WP_111726229.1\|1754750_1756004_+\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	6.82339e-134
NZ_LS483404.1\|WP_111726233.1\|1758911_1760291_+\|mycothione-reductase	gnl\|CDD\|181142	PRK07846, PRK07846, mycothione reductase; Reviewed.	0
NZ_LS483404.1\|WP_111726213.1\|1743083_1744418_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	8.45571e-103
NZ_LS483404.1\|WP_111726219.1\|1749549_1750608_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	2.70576e-160
NZ_LS483404.1\|WP_048379237.1\|1741521_1742220_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	7.5274e-62
NZ_LS483404.1\|WP_111726221.1\|1750619_1751204_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	7.46455e-39
NZ_LS483404.1\|WP_111726227.1\|1754008_1754737_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	2.77531e-66

>NZ_LS483404.1|WP_111727055.1|1745437_1745875_-|30S-ribosome-binding-factor-RbfA
MADNSRASRMAKRIQQIVATALEREIRDPRVSGVTITDTRMTGDLHYATVFYTVMGDSVGAEPDYEAAAAGLERVKGQLRKIVGDELSVRFTPTLSFEIDTVPEASASLEAVLQRARERDAQLAEQKKNATPAGDANPYKIDEDE
>NZ_LS483404.1|WP_111726215.1|1744417_1745419_-|DHH-family-phosphoesterase
MSRSITATRGDLESIAHAIAAASTIAVIGHIRPDADAIGSVTGLVRGARSLGKKVTGYIGQESRFSENLYTIPGADRVVLATRFAEEPDLVVTVDCGDLPRTGQLAPYIHENRDKVAVIDHHDTNPGFGRWNYISPESESTSVIVTELLDILGVELTKDIAHSLYAGLVTDTSNFRWGRPQMHRLAARFLEFGLDPRTISGQLIDDVSATDVQLIGNVLKTIDVLQVDRMSLAVLTVPHELTIGRSKTAVEKVVDYANSIRGADVGVVLKGIAADRWSVSFRSATYNVSALAALLGGGGHAKAAAAVREGQATAVLEDIVSAVHAWQESNQAI
>NZ_LS483404.1|WP_111726213.1|1743083_1744418_-|MATE-family-efflux-transporter
MSDNVVNPQSSSRDKNEHSQVTPKKIFSLAVPALGVLAATPLYLLYDTAVVGRLGSFELAALSAGTTIQSTVTTQLTFLSYGTTARSSRLFGQGKIKEAVAEGVQATWVAVGVGLTLLAIMLFGAPRFALWLTGNEGVAAEASSWMRVSAFAIPLTLMIMAGNGWMRGIQNTRAPLIFTLCGMLPMIVLVPLLVNHFGFVGSAYANVIGMGIICVGFLGALLRRHEGSWAPKGKVIWSQLIMGRDLIVRSLSFQIAFLSAAAVAARFGTASLAAHQIMIQVWNFITLVLDSLAIAAQTLTGAALGGGTVALARAVGKKVVQYSLGFAAILGALFALGNSTLPRLFTPDESVLEAIHGPWWLMIAMIIMGGVVFALDGVLLGASDAAFLRTISIGAVIFGFLPGVWISYLVDGGLVGVWCGLVAFIALRLGAVIWRFRSMRWARV
>NZ_LS483404.1|WP_111726211.1|1742221_1743040_-|metallophosphoesterase
MAATLWAVSDVHAAAQPNWERVKNLRPENPEDWLIVAGDVAERTDVVLKVLGRLARRYAQVIWVPGNHELFSRSSDERKGRDKYYELVDGCRQLGVITPEDPYPVFGDTTIVPLFTLYDYSFRVAGLTVEEAVAQARAKHVVMNDEFAIAPFVDIRAWCWERLTYSIRRLSKVTGPTILVNHWPLVQEPTMALRFSELALWCGTRHTRTWPVRYRARAVIYGHLHMPRTIEVDGVEHIEVSLGYPREWRRREVETARQAQPWPYPVMRLGED
>NZ_LS483404.1|WP_048379237.1|1741521_1742220_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MLPKRLFPESSAYCYVRTLKDAKHDQLNLENYDGLHPLERTLVAHSVDARKAEFGDARWCAHQALAELGYSEETPILRGTRGMPLWPDGFAGSMTHTNGLRAAVVVPTSHIRSIGLDAEPDQELPEEIIDIVARPGEQRQFEQLRQHGIAHPDRLLFCAKEALYKAWFPITERWLDFHQAEIDIRADGTLVAYLLVRPTPVPLVVGRWASVEGYLIVTATIERVSSYRYLNV
>NZ_LS483404.1|WP_111726209.1|1740599_1741493_+|tRNA-pseudouridine(55)-synthase-TruB
MSDSLASSGLVVVDKPQGMTSHDVVGRIRRIMGTKKVGHAGTLDPMATGVLVLGVNRGTKFLAHLVAETKSYAATMRLGAATDTDDAEGTVLHSAGAADLTEDDVREILPDFTGDIMQRPTQVSAIKIDGKRAYQRARDGEDFEIPARPVNVSRFEILTSRRDGEFLDVDVEVDCSSGTYIRALARDIGAGLGCGGHLTALRRTALGPISVNDALSLEELEESPRLSLTMDQALPRFYPTLPITASEAEALSMGKWLDPKGISGVHAAIAPDGRAIALVKENSKRLSTIFVARPSTL
>NZ_LS483404.1|WP_111726207.1|1739502_1740528_-|bifunctional-riboflavin-kinase/FAD-synthetase
MMWQGQIAVPSDFPGCVATIGVFDGVHRGHQTLISAAVAEAHERGIPSVLVTFDPHPIAVFLPEKTPPQLTTVSERAEYAKTLGIDHVLVINFTNELAGLSPEMYFRSLLLDTLKAQAVFVGENFTFGQNAQGTTETLRDLGVKYGVDVKVIDLLQDCPPMDSAACITEEPDAARLCSSMIRQYLERGDVRGAQWVLGRRFSVTSKIVHGAGRGGAELGYPTANLYFPESMALPSDGVYAAWLTVVDKQPIDGDMEPGVPYMAAVSVGTNPTFGADPRSVESFVLDKHADLYGHSARVEFVDRVRDMVKFDSVEQLLENMARDVETVREILSNHPAEGSAV
>NZ_LS483404.1|WP_083985923.1|1738465_1739401_-|nucleoside-hydrolase
MILDVDTGVDDALAIAYALGSPEVELIGVTGTYGNVLTADGVRNDLALLELLGRTDIPVYAGKPHAVKKDGFEVLEISAFIHGKNGIGEVELPDAKRQPEDGDAIEFLTSAVREHGDDLVIVATGPMTNLAHAIEADPTFAEHARIVIMGGALTVPGNVSPWAEANINQDPDAANTLFRTASDVTMIGLDVTLQTLLTYSDTQKWRALGTDAAHAYADLTDYYIKAYETTAPYLGGCGLHDPLAVAVAVDPSLVTLLPINLKVDVEGETRGRTIGDEERLNDPHKTARAAVAVDVDRFLAEFMQRIGSVLK
>NZ_LS483404.1|WP_048379231.1|1738102_1738372_-|30S-ribosomal-protein-S15
MALSTEKKKSILAEYGLHETDTGSPEAQVALLTERINNLTEHLKFHKHDHHSRRGLLLMVGRRRGLLKYLADTNVDRYRDLISRLGLRR
>NZ_LS483404.1|WP_111726205.1|1735592_1737923_-|polyribonucleotide-nucleotidyltransferase
MAKQNNAHHADHKVEFHHDEEYGIYEAVAVLDNGDFGTREIRFETGQLARQAGGSVTTYLDEDTMLLATTTASSQPRENLDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSQDPVEYYDVVAINGASAATQLSGVPVSGPVGGVRMAFIADEDHPEGTWVAFPNQEQHEQALFDIVVAGRIVEGEKGGRGRGRGRGRQSSQDEVAIMMVEAGAGENVVARIADGAPAPTEEIVAQGLEAAKPFIAALCKAQALLAENVEKETREFPLFPAYTDDVFAKVEKRAAKKLKSLMTIEGKQDRDDATNEYMVEVEEALIDDILSADEDLTEEAASKNIRAAYNTLMKQIVREMILRDHFRIDGRGVKDIRDLGVEVDLIPRAHGSALFERGETQILGVTTLDMLKMEQHIDSLTPVKSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALLPVIPTREDFPYTIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKDPVAGIAMGLVSGEVDGKKEYVALTDILGAEDAFGDMDFKVAGTSGFITALQLDTKLDGIPSKVLADALQEARDARLYILDTMAEIIDGPDEMSPFAPKITSLSIPVNKIGELIGPKGKTINSITEETGAEISIEDDGTVFVSAATGEGADAAIEKINAIANPQLPKVGERYLGTVVKTVAFGAFVSLTPGRDGLVHISKLGGGKRVEKTEDVVNVGDTILVEIADIDNRGKISLVPVQEDED
>NZ_LS483404.1|WP_111726217.1|1749029_1749404_-|YlxR-family-protein
MRKWWSNLPQVTNAPKSAHTLPQRTCIATRTTAPRSELLRLVSEPGETGRILADPKGVKPGRGAWITPNLATLELAIQRKAIQRALRVHGPLDTSHVHDYLAAHSLHPTTRAGVEEARGRQDRN
>NZ_LS483404.1|WP_111726219.1|1749549_1750608_-|transcription-termination/antitermination-protein-NusA
MNIDMTALQSIEKERGISVPELLNTIGSALLHAYKEHRELSDEQPTGARIDINQTTGEVRVVVEEHDAEGEVIGEYDDTPRNFARIGVVAVRDAIVKAMQAAEAGQAYDKYQATEGTVVSGIVQRDASANQRGIVVMELGTEIEAQDGILLPAEQIPGERLKHGDRVKAYVVGMQRTPRNLQINVSRTHPELIRGLFELEVPEIVDGSVEIINIAREAGHRSKVAVVPRAKGLNAKGACIGPRGQRVRAIMEELNGEKIDIIDYSDDPAVYVANALSPSKVVRVDILDEEAQEARVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDAEQMDAADNYSSDAPEDDITAQ
>NZ_LS483404.1|WP_111726221.1|1750619_1751204_-|ribosome-maturation-factor-RimP
MAFPQSDEISRVIAPIVERHGLDIEGIKPVPAGKKSQIRIYLDADERPDLDFLEVVSNEISDALDAAEERRELNLGAGYQLEVSTPGIDHPLKQPRHWRRNIGRLVTVALADSPDKKPHKGRIGQLDQGEENVILVGQEKKEPSLWRLRLADVGNAVVEVEFAQVPENQKELAHQPYEELAPNALPLGEGHDTL
>NZ_LS483404.1|WP_115243654.1|1751241_1752135_+|hypothetical-protein
MVYINRENEVAALNPRTRGHVRRAAAAVVMTTAIGMTLSGCSLAEQFGPKPNKELATLYQDARNDAEVFAQTNPGLAGLRADQAEELHAEIIRVCGFRQDGTVPKTCDDNAIADQVASTPMTLELSEDPSPSYSSTIISAPESSRALLVAQATDYAVQQGRDDVTTIAAQVKSDEDAAKSLNNENEQQILTTLAEFEAGAVYGLEASQAFVGDEAVAGILEDARARLAALNALLTVPVVPAASYEVTGEPPTDDTTGWAFVHRIQAEAQKAWTDAATKTQAPALLTMYIAGAANARS
>NZ_LS483404.1|WP_111726225.1|1752216_1753977_-|proline--tRNA-ligase
MITRLSELFLRTLREDPADAELPSHKLLVRAGYIRRVAPGIYSWLPLGLKALRNVEAIVREEMDAIGAQELHFPALLPREPYEVTNRWNEYGNELFRLKDRRENDMLLGPTHEEMFTATVKDLYTSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFNMDDAGLEESYQKHRAAYQRIFDRLGMEYVICKATSGAMGGSASEEFLAVSEYGEDTFVRSTDGTYAANVEAVVTVPGEERAIDGQPEAQKHKTPEANTMDALVEWAKETGLQVDGHPVRLEDTLKCLVVKLTTPGVDEPEIVGVVLPGDREADLKRLEEALSPAEVEMASDADFAAHPDLVRGYVGPGGVHKAGLRLLADPRVVAGTAWVTGADEDGHHLSNMVVGRDFEIDGYVEVAEVKEGDPAPDGSGTLTLQRGIEIGHIFQLGRKYTEALDVQILDENGKRAVPTMGSYGIGVSRALAAVAEQHLDEKGLRWPVEIAPYKVHVVAANKDAEAQAAAGELAQTLSDKGIEVLYDDRPKVSPGVKFKDAELLGMPFIAILGRGYAEGTIELRIRGGETKHVPVAEAAETLISLVAGK
>NZ_LS483404.1|WP_111726227.1|1754008_1754737_+|peroxide-stress-protein-YaaA
MLIVLPPSETKSTGGDHPPLNLAELSFPELNPIREDIAEDLVALTGPDALTALGISEKLAGEVELNNQLWEQPTVPAITRYTGVLYDALRPQDLTSQQSSSIAIGSALFGVVGAHDMIPHYRLSGGTKLPRRNDAAPAPTMKKRWGSAITEVLADYPGLIVDLRSGTYQNLGKLKGSTTLRVETPDGKVVSHFNKHYKGVLTREVCLSGESPEKSEEFYDLTRELGFETRLSGTTITMTVER
>NZ_LS483404.1|WP_111726229.1|1754750_1756004_+|YdiU-family-protein
MTPRLALDHNFVTAFPELAVRTDPEEHPELSTVVINDSLATELGLDSNWLRSPEGAQFLAGHLTDTFATAYAGHQFGSYSPMLGDGRSLLLGRVFPKPAETGPSWELMSKGTGPTAFSRRGDGRMVLRPALREFLVSEALHALGIPTTRCLAVLTTGLKVMRRELEPGAIVVRVARSHVRVGTFEYAIRTRQDSDLVDRLIEYSRNELYPTATNAEELFGQVCQRQASLVASWLRVGFVHGVLNTDNICISGETIDFGPCAFADTYDPGAVFSSIDTHGRYALGNQVPAVQWNLARWAETLLPRIGIDTAQEILHDFPTAVRSALGSDAALPDRIAGTDTDLLSYRRAYNSPHTPWFIPRNWQLEHALNQAFAGDMAEYMRLYRAVTHPYEWQDEFADLASPVEAEVNQPFITFCGT
>NZ_LS483404.1|WP_098389150.1|1756053_1757556_-|malate-dehydrogenase-(quinone)
MSNTTKITDEVDVALIGAGVMSATLGAILRELEPNWTQAIFERLDAPAQESSYPWNNAGTGHSALCELNYTPEKNGKIDITKAVGINEKFQLSRQFWAHQVETGQLGDPKEFINPIPHVSLAQGEEQVRFLRHRYEVLSSQPLFPGMQFSDDDAVFQEKLPLMSEGRDFSNKVAVSWTNVGTDINYGALTKQFLDNATKQGTVIRYGSEVTKIKADGKKWKVHVKNVHTGDQSVVRANFVFVGAGGYALDLLRTAGIPEVRGIAGFPVSGMWLRCTNPELIKQHHAKVYGKAVTKNAPPMSVPHLDTRVIDGETGLLFGPFGGWSPKFLKKGSYLDLFKSIRPDNIPSYLGVAVQEMDLTKYLVSEVLKDFDDRMDTLREYVPNARNEDWETVVAGQRVQVIQPAPAPRFGSLEFGTALVNNAEGSIAGLLGASPGASIAPAAMIELLERCFGEYMIDWADKLYELFPSYGQPLSREPELFEKVWTHSQEVLKLDNPQEF
>NZ_LS483404.1|WP_172607416.1|1757892_1758900_+|alpha/beta-hydrolase
MNHSAQFHDTSWTKDVLGPDFQSLTLDLGPDYDELGDAVATLVRYHPADDVSGWSSRPALLWVHGLSDYFFHRHVAEYFHNHGFAFYAVDLRKAGRSERPGTSPHYVSNLRNYFPDLDAATSVIAQQHTAVIPMAHSTGGLTVSLWAANRTGAHTRAAQYIPGVILNSPWLDLQFPTPVATAIRMASRSVGKVAPRLPIPDDSLGAYGQSLYQGAHGHWDFNTEWKPLGGVKKYAGWMRAIVNAQGAVHDGLMLPMPVLTLCSTRSFSPKEYSSACDVADVVLDVNDITHWAAKLGSPSTVTPIEGARHDVFLSQPHALNNALKTTLTWLESLNI
>NZ_LS483404.1|WP_111726233.1|1758911_1760291_+|mycothione-reductase
MNTHYDLIIIGTGSGNSLPDERFDDKRIAIIEKGTFGGTCLNVGCIPTKMYVYAADVAYEARHAAKLGLDIDYKGADWDSIVSRIFAQRIDPIAAGGEAYRRGSETPNIDVYDGHATFTGPKTIATAQGPTPVTITGDQIVIATGSRPVIPEAVAASGVKYRTNEDIMRLEKQPESLIIYGGGYIAMEFAHVFDALGTKVHIVARSPQLLRHVDDDIATRFNDIAYERFDVHGGRTIAGLTQQGDQVVATLDDGTTIHADEILVATGRVSTAEGLNPEAGGVELKDGRIAVDEYGRSVSADGVWALGDVSSPYQLKHVANAEARAVQHNLLHPDDMRPLPHDLVPAAIFTHPQIATVGLTEEEAREQGLDIAVKIQAYGDVAFGWAMEDTTGIVKLIGDKSSGRLVGAHLMGPQASTLIQQLITIMAYKIDAREVARNQYWIHPALPEVIENALLGLPW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483404_2	2.4\|488366\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	488366-488398	33	NZ_CP035710	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence	243921-243953	7	0.788
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP040721	Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence	112843-112875	7	0.788
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	69798-69830	7	0.788
NZ_LS483404_2	2.24\|489587\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489587-489619	33	MG592418	Vibrio phage 1.034.O._10N.261.46.B7, partial genome	3314-3346	7	0.788
NZ_LS483404_2	2.24\|489587\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489587-489619	33	MG592511	Vibrio phage 1.139.B._10N.261.48.C6, partial genome	3263-3295	7	0.788
NZ_LS483404_2	2.24\|489587\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489587-489619	33	MG592419	Vibrio phage 1.034.X._10N.261.46.B7, partial genome	3272-3304	7	0.788
NZ_LS483404_2	2.24\|489587\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489587-489619	33	MG592510	Vibrio phage 1.139.A._10N.261.48.C6, partial genome	3311-3343	7	0.788
NZ_LS483404_2	2.24\|489587\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489587-489619	33	NZ_CP023976	Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence	200995-201027	7	0.788
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	MT498037	Streptomyces phage Dryad, complete genome	33779-33811	7	0.788
NZ_LS483404_2	2.1\|488184\|32\|NZ_LS483404\|CRISPRCasFinder,CRT	488184-488215	32	MG925349	Mycobacterium phage Mendokysei, complete genome	10448-10479	8	0.75
NZ_LS483404_2	2.6\|488488\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	488488-488520	33	NZ_CP025114	Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence	70507-70539	8	0.758
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	204946-204978	8	0.758
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	171964-171996	8	0.758
NZ_LS483404_2	2.24\|489587\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489587-489619	33	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	400957-400989	8	0.758
NZ_LS483404_2	2.33\|490136\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	490136-490168	33	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1280284-1280316	8	0.758
NZ_LS483404_2	2.33\|490136\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	490136-490168	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1569558-1569590	8	0.758
NZ_LS483404_2	2.33\|490136\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	490136-490168	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	132980-133012	8	0.758
NZ_LS483404_2	2.33\|490136\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	490136-490168	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1062470-1062502	8	0.758
NZ_LS483404_2	2.33\|490136\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	490136-490168	33	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1880281-1880313	8	0.758
NZ_LS483404_2	2.33\|490136\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	490136-490168	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	253027-253059	8	0.758
NZ_LS483404_2	2.11\|488794\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	488794-488826	33	KY940711	Bradyrhizobium phage BDU-MI-1, complete genome	97727-97759	9	0.727
NZ_LS483404_2	2.13\|488916\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	488916-488948	33	MT774392	CrAssphage cr128_1, complete genome	12828-12860	9	0.727
NZ_LS483404_2	2.14\|488977\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	488977-489009	33	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	956534-956566	9	0.727
NZ_LS483404_2	2.16\|489099\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489099-489131	33	NC_011981	Agrobacterium vitis S4 plasmid pAtS4e, complete sequence	626469-626501	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	401154-401186	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	416647-416679	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	403959-403991	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	444736-444768	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	401127-401159	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	430061-430093	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	500451-500483	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	416860-416892	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	415548-415580	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	416647-416679	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	430061-430093	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	401127-401159	9	0.727
NZ_LS483404_2	2.22\|489465\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489465-489497	33	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	400633-400665	9	0.727
NZ_LS483404_2	2.23\|489526\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489526-489558	33	NZ_CP033050	Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence	110986-111018	9	0.727
NZ_LS483404_2	2.24\|489587\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489587-489619	33	KT021004	Thermobifida phage P1312, complete genome	24304-24336	9	0.727
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	374048-374080	9	0.727
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	18571-18603	9	0.727
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	674559-674591	9	0.727
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	KM233689	Pseudomonas phage H70, complete genome	25639-25671	9	0.727
NZ_LS483404_2	2.34\|490197\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	490197-490229	33	NC_015383	Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence	123750-123782	9	0.727
NZ_LS483404_2	2.14\|488977\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	488977-489009	33	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	456017-456049	10	0.697
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	MN850572	Escherichia phage aaroes, complete genome	30002-30034	10	0.697
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	MK373798	Escherichia phage vB_EcoS_G29-2, complete genome	20401-20433	10	0.697
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	MN850569	Escherichia phage vojen, complete genome	21503-21535	10	0.697
NZ_LS483404_2	2.26\|489709\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489709-489741	33	NC_049827	Escherichia phage damhaus, complete genome	3772-3804	10	0.697
NZ_LS483404_2	2.16\|489099\|33\|NZ_LS483404\|CRISPRCasFinder,CRT,PILER-CR	489099-489131	33	MN304824	Catenulispora phage 69_17, complete genome	39665-39697	11	0.667

1. spacer 2.4|488366|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 7, identity: 0.788

actacggccttgacacccgcgcggt-attcgccg	CRISPR spacer
tctacggcatcgacacccgcgcggtcgcgcgcc-	Protospacer
 ******* *.************** .. ****

2. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040721 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

accgacgtcacctgcgcgtcctcgcgcaccatc-	CRISPR spacer
accgacggcacctacgcgtcctcg-acaccgcga	Protospacer
******* *****.********** .****..

3. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 7, identity: 0.788

-accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
ggctggc-tgacctgcggatcctcgcgcaccatc	Protospacer
 .*.*.* * ******* .***************

4. spacer 2.24|489587|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MG592418 (Vibrio phage 1.034.O._10N.261.46.B7, partial genome) position: , mismatch: 7, identity: 0.788

ccgtagtaggtgccggtgcgggtggtgatggtg	CRISPR spacer
aattagcaggtgccggggcgggtggtgatgtag	Protospacer
   ***.********* *************  *

5. spacer 2.24|489587|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MG592511 (Vibrio phage 1.139.B._10N.261.48.C6, partial genome) position: , mismatch: 7, identity: 0.788

ccgtagtaggtgccggtgcgggtggtgatggtg	CRISPR spacer
aattagcaggtgccggggcgggtggtgatgtag	Protospacer
   ***.********* *************  *

6. spacer 2.24|489587|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MG592419 (Vibrio phage 1.034.X._10N.261.46.B7, partial genome) position: , mismatch: 7, identity: 0.788

ccgtagtaggtgccggtgcgggtggtgatggtg	CRISPR spacer
aattagcaggtgccggggcgggtggtgatgtag	Protospacer
   ***.********* *************  *

7. spacer 2.24|489587|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MG592510 (Vibrio phage 1.139.A._10N.261.48.C6, partial genome) position: , mismatch: 7, identity: 0.788

ccgtagtaggtgccggtgcgggtggtgatggtg	CRISPR spacer
aattagcaggtgccggggcgggtggtgatgtag	Protospacer
   ***.********* *************  *

8. spacer 2.24|489587|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023976 (Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence) position: , mismatch: 7, identity: 0.788

ccgtagtaggtgccggtgcgggtggtgatggtg	CRISPR spacer
gtgttgccggtgacggtccgggtggtgatggtg	Protospacer
 .** *. **** **** ***************

9. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MT498037 (Streptomyces phage Dryad, complete genome) position: , mismatch: 7, identity: 0.788

aacctccagcagggcgggcatatcatggtgtgg-	CRISPR spacer
aacctccagcacgccgggcatatca-gatgctcc	Protospacer
*********** * *********** *.**.

10. spacer 2.1|488184|32|NZ_LS483404|CRISPRCasFinder,CRT matches to MG925349 (Mycobacterium phage Mendokysei, complete genome) position: , mismatch: 8, identity: 0.75

cccacagaagaagaccggcgtaccgcgatggg	CRISPR spacer
cacaccgaagatgaccggcgtaccgggcactg	Protospacer
* *** ***** ************* *    *

11. spacer 2.6|488488|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025114 (Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcgtcgagcgcggcgaccgtctcaaggtgcgaa	CRISPR spacer
gcgtcgagctcggcaaccgtctcagtgcgcccg	Protospacer
********* ****.*********. *.**  .

12. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 8, identity: 0.758

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
tgcgacgtcacctgcgcgcccgcgcgctcggcc	Protospacer
  ****************.** ***** * ..*

13. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 8, identity: 0.758

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
tgcgacgtcacctgcgcgcccgcgcgctcggcc	Protospacer
  ****************.** ***** * ..*

14. spacer 2.24|489587|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 8, identity: 0.758

-ccgtagtaggtgccggtgcgggtggtgatggtg	CRISPR spacer
gccgcca-gcgtgctgctgcgggtggtgatggtg	Protospacer
 ***. . . ****.* *****************

15. spacer 2.33|490136|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.758

tgcggcgcgagttcgtcctgtgccacgcccatg	CRISPR spacer
ggcaggcgcagttcctgctgtgccacgcccatg	Protospacer
 **.*    ***** * ****************

16. spacer 2.33|490136|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

tgcggcgcgagttcgtcctgtgccacgcccatg	CRISPR spacer
ggcaggcgcagttcctgctgtgccacgcccatg	Protospacer
 **.*    ***** * ****************

17. spacer 2.33|490136|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.758

tgcggcgcgagttcgtcctgtgccacgcccatg	CRISPR spacer
ggcaggcgcagttcctgctgtgccacgcccatg	Protospacer
 **.*    ***** * ****************

18. spacer 2.33|490136|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

tgcggcgcgagttcgtcctgtgccacgcccatg	CRISPR spacer
ggcaggcgcagttcctgctgtgccacgcccatg	Protospacer
 **.*    ***** * ****************

19. spacer 2.33|490136|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.758

tgcggcgcgagttcgtcctgtgccacgcccatg	CRISPR spacer
ggcaggcgcagttcctgctgtgccacgcccatg	Protospacer
 **.*    ***** * ****************

20. spacer 2.33|490136|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

tgcggcgcgagttcgtcctgtgccacgcccatg	CRISPR spacer
ggcaggcgcagttcctgctgtgccacgcccatg	Protospacer
 **.*    ***** * ****************

21. spacer 2.11|488794|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to KY940711 (Bradyrhizobium phage BDU-MI-1, complete genome) position: , mismatch: 9, identity: 0.727

tcatggtggaagacatcgacggcggggaaccgg	CRISPR spacer
aggaggtggaagacagcgacggcggtgagcacg	Protospacer
  . *********** ********* **.*  *

22. spacer 2.13|488916|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MT774392 (CrAssphage cr128_1, complete genome) position: , mismatch: 9, identity: 0.727

gttggtgttcctttcttccccacttttctatta	CRISPR spacer
ccctatcctcctttcttccccactcctctatta	Protospacer
 .. .* .****************..*******

23. spacer 2.14|488977|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 9, identity: 0.727

tacctggccaagtccgatcagaacgcgctgaaa	CRISPR spacer
cagaaccgcaagtccgatcaggacgcgctgaag	Protospacer
.*      *************.**********.

24. spacer 2.16|489099|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NC_011981 (Agrobacterium vitis S4 plasmid pAtS4e, complete sequence) position: , mismatch: 9, identity: 0.727

gttcggcgccacggttgccgatgtgatttgttg	CRISPR spacer
cttcggcaccacggttgccgatctgaacgggca	Protospacer
 ******.************** *** . * ..

25. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

26. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

27. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

28. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

29. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

30. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

31. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

32. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

33. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

34. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

35. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

36. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

37. spacer 2.22|489465|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.727

accgacgtcacctgcgcgtcctcgcgcaccatc	CRISPR spacer
gggaccatcaccagcccgtcctcgcgcaccagc	Protospacer
.  . *.***** ** *************** *

38. spacer 2.23|489526|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gacacaccactcaacaaaaaagcagctttccaa	CRISPR spacer
aaaatgttactcaacaaaaaaacagccttccag	Protospacer
.* *....*************.****.*****.

39. spacer 2.24|489587|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to KT021004 (Thermobifida phage P1312, complete genome) position: , mismatch: 9, identity: 0.727

ccgtagtaggtgccggtgcgggtggtgatggtg	CRISPR spacer
gtgtagtagacgccggtgcgggtggtggggact	Protospacer
 .*******..****************. *..

40. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.727

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
cccctccagcagggcgcgcatctcatagctttc	Protospacer
  ************** **** ****.*. *

41. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.727

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
cccctccagcagggcgcgcatctcatagctttc	Protospacer
  ************** **** ****.*. *

42. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 9, identity: 0.727

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
cccctccagcagggcgcgcatctcatagctttc	Protospacer
  ************** **** ****.*. *

43. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to KM233689 (Pseudomonas phage H70, complete genome) position: , mismatch: 9, identity: 0.727

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
gccatccagcagggcgggcagatcaaggacagt	Protospacer
. * **************** **** **   *

44. spacer 2.34|490197|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgggtggttgggcggtgtttgcgtagtgt	CRISPR spacer
cggccgggcggttgcgcggtgtttgcggtcgat	Protospacer
  ******.***** ************    .*

45. spacer 2.14|488977|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 10, identity: 0.697

tacctggccaagtccgatcagaacgcgctgaaa	CRISPR spacer
cagaaccgcaagtccgatcaggacgcgttgaag	Protospacer
.*      *************.*****.****.

46. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MN850572 (Escherichia phage aaroes, complete genome) position: , mismatch: 10, identity: 0.697

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
gcaatccagcagggcgggcaaatcaaggactca	Protospacer
.   **************** **** **  * .

47. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MK373798 (Escherichia phage vB_EcoS_G29-2, complete genome) position: , mismatch: 10, identity: 0.697

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
gcaatccagcagggcgggcaaatcaaggactca	Protospacer
.   **************** **** **  * .

48. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MN850569 (Escherichia phage vojen, complete genome) position: , mismatch: 10, identity: 0.697

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
gcaatccagcagggcgggcaaatcaaggactca	Protospacer
.   **************** **** **  * .

49. spacer 2.26|489709|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to NC_049827 (Escherichia phage damhaus, complete genome) position: , mismatch: 10, identity: 0.697

aacctccagcagggcgggcatatcatggtgtgg	CRISPR spacer
gcaatccagcagggcgggcaaatcaaggactca	Protospacer
.   **************** **** **  * .

50. spacer 2.16|489099|33|NZ_LS483404|CRISPRCasFinder,CRT,PILER-CR matches to MN304824 (Catenulispora phage 69_17, complete genome) position: , mismatch: 11, identity: 0.667

gttcggcgccacggttgccgatgtgatttgttg	CRISPR spacer
tgtcggcgccacggatgccgacgtgaccatgga	Protospacer
  ************ ******.****..    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

402510 : 410242

Staphylococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048381896.1\|402510_403497_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.0e-71	49.4
WP_048381897.1\|403579_403903_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	1.8e-17	41.6
WP_048381899.1\|403952_405143_+	N-acetylmuramoyl-L-alanine amidase	A0A223LCP5	Bacillus_phage	1.1e-08	28.9
WP_111726875.1\|406144_407143_-	ParB/RepB/Spo0J family partition protein	A0A1I9KFW9	Aeromonas_phage	2.2e-05	25.2
WP_098388853.1\|407162_408074_-	ParA family protein	Q8JL10	Natrialba_phage	7.1e-19	34.5
WP_111725386.1\|408143_408833_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_048381903.1\|408956_409916_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_083986220.1\|409978_410242_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.3e-13	50.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483404

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection