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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LS483398 Bordetella pertussis strain NCTC10910 chromosome 1 4 crisprs csa3,cas3,DinG,DEDDh 0 0 29 0

Results visualization

1. NZ_LS483398
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483398_1 586526-586610 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483398_2 767969-768062 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483398_3 1334392-1334486 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LS483398_4 3792228-3792337 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12608 : 71196 44 uncultured_Mediterranean_phage(20.0%) transposase NA
DBSCAN-SWA_2 256007 : 298853 35 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_3 334873 : 394370 52 Natrialba_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_4 405007 : 457995 51 Planktothrix_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_5 500816 : 561339 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_6 569271 : 622859 47 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_7 726792 : 784301 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_8 925306 : 986496 55 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_9 991820 : 1039060 50 uncultured_Caudovirales_phage(18.18%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_10 1045226 : 1099156 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_11 1374978 : 1423901 46 uncultured_Mediterranean_phage(37.5%) holin,tRNA,transposase NA
DBSCAN-SWA_12 1432969 : 1496557 48 Planktothrix_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_13 1655965 : 1724452 56 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_14 1814065 : 1852655 35 Emiliania_huxleyi_virus(14.29%) protease,transposase NA
DBSCAN-SWA_15 2389602 : 2462815 59 Bacillus_virus(20.0%) transposase NA
DBSCAN-SWA_16 2476021 : 2521393 45 Bacillus_phage(25.0%) transposase NA
DBSCAN-SWA_17 2586818 : 2706167 106 Lake_Baikal_phage(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_18 2713463 : 2769054 47 uncultured_Caudovirales_phage(25.0%) transposase NA
DBSCAN-SWA_19 2805003 : 2871331 56 Ectocarpus_siliculosus_virus(11.11%) transposase NA
DBSCAN-SWA_20 2899376 : 2961682 55 Salmonella_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_21 3047799 : 3088468 42 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_22 3143933 : 3216803 58 Moraxella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_23 3219946 : 3286756 49 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_24 3317142 : 3360833 38 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 3545281 : 3618268 59 Xanthomonas_phage(14.29%) holin,tRNA,transposase NA
DBSCAN-SWA_26 3636691 : 3692892 41 Erwinia_phage(25.0%) integrase,tRNA,protease,transposase attL 3675739:3675757|attR 3695627:3695645
DBSCAN-SWA_27 3741830 : 3795571 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3801725 : 3861025 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_29 3875963 : 3934036 47 Planktothrix_phage(12.5%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage