CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	3 crisprs	DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	0	5	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483407_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483407_1

117860-117955

Orphan

Consensus_repeat	Method
CTAGATGGTGAAGAAGTCCCAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483407_1

>merge|NZ_LS483407|1|117860-117955|CRISPRCasFinder
CTAGATGGTGAAGAAGTCCCAGAAGTTCCAAGCGAGAGCTTAGAACCTGCGCTTCCTCCATTAATGCCAGAACTAGATGGTGAAGAAGTCCCAGAA

>NZ_LS483407|1|1|117860-117955|CRISPRCasFinder
CTAGATGGTGAAGAAGTCCCAGAA	GTTCCAAGCGAGAGCTTAGAACCTGCGCTTCCTCCATTAATGCCAGAA
CTAGATGGTGAAGAAGTCCCAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483407.1\|WP_111674431.1\|108976_110044_-\|glutamyl-aminopeptidase	unknown	unknown	gnl\|CDD\|132151
NZ_LS483407.1\|WP_002986472.1\|124874_125717_+\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NZ_LS483407.1\|WP_168429870.1\|126915_128322_+\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
NZ_LS483407.1\|WP_002986515.1\|110789_111107_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_LS483407.1\|WP_032463131.1\|129424_130609_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_LS483407.1\|WP_032463130.1\|128392_129304_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LS483407.1\|WP_002986511.1\|111124_111751_+\|DUF4479-and-tRNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|239196
NZ_LS483407.1\|WP_111674443.1\|120005_123116_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|380024
NZ_LS483407.1\|WP_014611939.1\|114182_115055_-\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_LS483407.1\|WP_032460921.1\|125902_126562_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483407.1\|WP_021733281.1\|111902_112298_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180914
NZ_LS483407.1\|WP_002986504.1\|112557_113199_-\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|224345
NZ_LS483407.1\|WP_002986450.1\|132051_132732_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225512
NZ_LS483407.1\|WP_002986527.1\|108158_108929_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_LS483407.1\|WP_002986455.1\|130620_131280_+\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_LS483407.1\|WP_111674437.1\|115201_116695_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|285470
NZ_LS483407.1\|WP_111674435.1\|113218_114196_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_LS483407.1\|WP_111674444.1\|123154_124804_+\|isopeptide-forming-domain-containing-fimbrial-protein	unknown	unknown	gnl\|CDD\|375478
NZ_LS483407.1\|WP_002987854.1\|131282_131930_+\|3-oxoacid-CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_LS483407.1\|WP_002986518.1\|110499_110793_+\|DUF4651-domain-containing-protein	unknown	unknown	gnl\|CDD\|339494

Protein	Function_ID	Function_description	E-value
NZ_LS483407.1\|WP_111674431.1\|108976_110044_-\|glutamyl-aminopeptidase	gnl\|CDD\|132151	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_LS483407.1\|WP_002986472.1\|124874_125717_+\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	3.43023e-76
NZ_LS483407.1\|WP_168429870.1\|126915_128322_+\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	0
NZ_LS483407.1\|WP_002986515.1\|110789_111107_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.40404e-25
NZ_LS483407.1\|WP_032463131.1\|129424_130609_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_LS483407.1\|WP_032463130.1\|128392_129304_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.3501e-29
NZ_LS483407.1\|WP_002986511.1\|111124_111751_+\|DUF4479-and-tRNA-binding-domain-containing-protein	gnl\|CDD\|239196	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.	1.22775e-48
NZ_LS483407.1\|WP_111674443.1\|120005_123116_+\|VWA-domain-containing-protein	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	4.00885e-13
NZ_LS483407.1\|WP_014611939.1\|114182_115055_-\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	2.14747e-148
NZ_LS483407.1\|WP_021733281.1\|111902_112298_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|180914	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional.	4.46517e-88
NZ_LS483407.1\|WP_002986504.1\|112557_113199_-\|deoxynucleoside-kinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	1.2135e-96
NZ_LS483407.1\|WP_002986450.1\|132051_132732_-\|transcriptional-regulator	gnl\|CDD\|225512	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown].	1.84998e-86
NZ_LS483407.1\|WP_002986527.1\|108158_108929_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	6.76272e-107
NZ_LS483407.1\|WP_002986455.1\|130620_131280_+\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	4.65529e-110
NZ_LS483407.1\|WP_111674437.1\|115201_116695_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|285470	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain. Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This corresponds to the PRD like region.	6.54544e-61
NZ_LS483407.1\|WP_111674435.1\|113218_114196_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	3.02939e-121
NZ_LS483407.1\|WP_111674444.1\|123154_124804_+\|isopeptide-forming-domain-containing-fimbrial-protein	gnl\|CDD\|375478	pfam18002, T6_Ig_like, T6 antigen Ig like domain. This is the N-terminal immunoglobulin-like domain. Family members carrying this domain include Trypsin-resistant surface T6 protein found in Streptococcus pyogenes.	3.49173e-41
NZ_LS483407.1\|WP_002987854.1\|131282_131930_+\|3-oxoacid-CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	1.38043e-103
NZ_LS483407.1\|WP_002986518.1\|110499_110793_+\|DUF4651-domain-containing-protein	gnl\|CDD\|339494	pfam15513, DUF4651, Domain of unknown function (DUF4651). family of short, secreted proteins specific to the Streptococcus genus, with distant homologs, not recognized by this HMM, found in other cocci. In all sequenced genomes, proteins from this family appear in a conserved genomic context with an thioredoxin, tRNA synthase and tRNA binding protein, but the functional implication of this is unclear.	8.86115e-29

>NZ_LS483407.1|WP_111674437.1|115201_116695_-|helix-turn-helix-domain-containing-protein
MIEKYLESSIESKCQLIVLFFKTSYLPITEVAEKTGLTFLQLNHYCEELNAFFPGSLSMTIQKRMISCQFTHPFKETYLYQLYASSNVLQLLAFLIKNGSHSRPLTDFARSHFLSNSSAYRMREALIPLLRNFELKLSKNKIVGEEYRIRYLIALLYSKFGIKVYDLTQQDKNTIHSFLSHSSTHLKTSPWLSESFSFYDILLALSWKRHQFSVTIPQTRIFQQLKKLFVYDSLKKSSHDIIETYCKLNFSAGDLDYLYLIYITANNSFASLQWTPEHIRQCCQLFEENDTFRLLLNPIITLLPNLKEQKASLVKALMFFSKSFLFNLQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILRNIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITHSQLIPFVQHELTKGIAVAEISFDESILSIQELIYQVKEEKFQADLTKQLT
>NZ_LS483407.1|WP_014611939.1|114182_115055_-|Hsp33-family-molecular-chaperone-HslO
MDKIIKSIAQSGAFRAYVLDSTETVALAQEKHNTLSSSTVALGRTLIANQILAANQKGDSKITVKVIGDSSFGHIISVADTKGHVKGYIQNTGVDIKKTATGEVLVGPFMGNGHFVTIIDYGTGNPYTSTTPLITGEIGEDFAYYLTESEQTPSAIGLNVLLDENDKVKVAGGFMVQVLPGASEEEIARYEKRLQEMPAISQLLTSENHVDALLEAIYGDEPYKRLSEEPLSFQCDCSRERFEAALMTLPKADLQAMIDEDKGAEIVCQFCGTKYQFNENDLEALINDKA
>NZ_LS483407.1|WP_111674435.1|113218_114196_-|tRNA-dihydrouridine-synthase-DusB
MIKLNSSFRIGDVEIPHRTVLAPMAGVTNSAFRTIAKEFGAGLVVMEMISEKGLLYNNEKTLHMLHIDENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDKIYHIVKEVTSVLDIPLTVKMRTGWADSSLAVENALAAESAGVSALAMHGRTREQMYTGTCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMNNPYLFTQINHFFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAIREFRGLAPHYLRGTAGAAKVRGAVSRAETLAEVEAIFETVR
>NZ_LS483407.1|WP_002986504.1|112557_113199_-|deoxynucleoside-kinase
MLIVLAGTIGAGKSSLAAALGEHLGTDVFYEAVDNNPVLDLYYQDPKKYAFLLQIYFLNKRFKSIKEAYQADNNILDRSIFEDELFLKLNYKNGNVTKTELDIYQELLANMLEELEGMPKKRPDLLIYIDVSFDKMLERIEKRGRSFEQVDGNPSLEQYYHQVHGEYPTWYEDYKVSPKMKIDGNSLDFVQNPQDLATVLKMIDTKLKELHLL
>NZ_LS483407.1|WP_021733281.1|111902_112298_+|single-stranded-DNA-binding-protein
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGEFRTRKYDKDGQVHYVTEVLCQSFQLLESRTQRAMRENNVTNDLVDLVLEEDTLPF
>NZ_LS483407.1|WP_002986511.1|111124_111751_+|DUF4479-and-tRNA-binding-domain-containing-protein
MIFAYNKEQVGDVLMVILQDTKDIKRQVERKGKVARVFAEESGKTLAWNIFEASSLITIEGNGQIFLTDEDLARLNAELAKEGFSERLEPTVGPVFVVGQIVEMVAHPDSDHLNICQVAIGEDQTVQIVAGAPNAALGLKTIVALPGAIMPNGSLIFPGKLRGEESYGMMCSPRELALPNAPQKRGIIELDESAVVGEAFDPAKHWKG
>NZ_LS483407.1|WP_002986515.1|110789_111107_+|thioredoxin-family-protein
MIRPTSYESLAALIEKEDKLVLFFTADWCPDCQFIYPIMPEIEAELTDMTFVCVNRDQFIEVAQKWDIFGIPSFVVIEKGQEVGRLVNKMRKTKTEIMHFLAAYQ
>NZ_LS483407.1|WP_002986518.1|110499_110793_+|DUF4651-domain-containing-protein
MRDMSKKKIGMISGIFGFSLAIGLGIVIKDYCQDRQRRQMTRDLRTFFSPLGQIEVLYINPCQVKQDYISGGVVMSNGKQYQFTYHSRQISFEEDKG
>NZ_LS483407.1|WP_111674431.1|108976_110044_-|glutamyl-aminopeptidase
MTDLFSKIKEVTELDGIAGYEHSVRDYLRTKIIPLVDHVETDGLGGIFGIRDSKAEKAPRILVAAHMDEVGFMVSDIKVDGTLRVVGIGGWNPLVVSSQRFTLYTRTGQVIPLISGSVPPHFLRGANGSANLPHIEDIVFDGGFTDKAEAERFGITPGDIIVPQSETILTANQKNIISKAWDNRYGVLMITEMLEALKGQDLNNTLIAGANVQEEVGLRGAHVSTTKFDPELFFAVDCSPAGDIYGNPGTIGDGTLLRFYDPGHVMLKDMRDFLLTTAEEAGVNIQYYCGKGGTDAGAAHLQNGGVPSTTIGVCARYIHSHQTLYAMDDFVEAQAFLQAIIKKLDRSTVDLIKCY
>NZ_LS483407.1|WP_002986527.1|108158_108929_-|pyrroline-5-carboxylate-reductase
MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLTLPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGMPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELERLGLTTTVSSAIDKTIDKAKSL
>NZ_LS483407.1|WP_111674443.1|120005_123116_+|VWA-domain-containing-protein
MYSRLKRELVIVINRKKKYKLIRLMVTLGLIFSQLVLPIRRLGLQMISTQTKVIPQEIVTQTETQGTQVVATKQKLESENSSLKVALKRESGFEHNATIDASLDTESQGDNSQRSVTQAIVTMALELRKQGLSIVDTKIVRIQSSTNQRNDITTTLTFKNGLSLEGASTEANDPNVRVGIVNPNDTVQTITPTIKQEADGKVKNLVFTGRLGKQVIIVSTTRLKEEQTISLDSYGELVIDGAVGLSKKDRPPYSKPITVNILKPKLSSIESSLDSKDFEIVKTIDNLYTWDDQFYLLDFISKQYEVLKTDYQSAKDSTPQIRDILFGEYTVEPLVMNKGHNNTINIYIRSTRPLGLKPIGAAPALIQPRSFRSLTPRSTRMKRSAPVEKFEGELEHHKRIDYLGDNQNNPDTTIDDKEDEHDTSDLYRLYLDMTGKKQPLDILVVVDRSGSMQEGIGSVQKYRYYGYQWSNYYGWRYYNTLDSDEWKGETFSDRGIQYRYRSVVQVSSGIRRDQAVKDALLGEHGLLKKFIGINPKNNIGIIGFQGAVSYQYSDQKLDQTPWGRIMYQPSKETSRDADILKNWENNANLDSELLSYMDNNGTNYHAALLKADELLAQVADNGRRKIMIFVSDGVPTFYFGSDHYRAGNGTTSYPDNVKQSQQGTQTAIDDFKMKHSNLSIYSLGVSKDINSDTASSSPVVLKYLSGEGHYYGITDTDQLETTLNKIVEDSKISSLSISDTLSQYVDYYEKQPDVLVTRTSKETNKTEILYQNEQVQEVGKGIIDKVTFTPKTDGQPKGKVTLTFKPDYRVDDKYTYTLSFNVKASDKAYEKYKNEKGKYTVEGDVDTDYNGNQTSSGKGGLHSNQAASVDYMADGRKQQLPYKHPVIQVKTVPITFTKVDADNNQKKLAGVEFELRKEDKKIVWEKGITGSNGQLNFKYLQKGKTYYLYETKAKLGYTLPENPWEVAVANNGDIKVKHPIEGELKSKDGSYMIKNYKIYQLPSSGGRGSQIFIIVGSMTATVALLFYRRQHRKKQY
>NZ_LS483407.1|WP_111674444.1|123154_124804_+|isopeptide-forming-domain-containing-fimbrial-protein
MREKILITAKKLMLACLAILAVVGLGMTRVSALSKDDKAELKITNIEGKPKVTLYQIGEGKYSDRGDSFIGFEFFDGAKELSQTEPTSEQINKIANGLNEGGTVVKKIVETQNLDGNIYVSKKVSAGIYIAILTGAEHGRVYNPILLTASYNGDGMIKAGKVSATDHYLYGDTAVAKSSQPTITKKITKSTKDGDKDTASLGEKINYKLTVQLPSYSKEATNKTVFVSDTMSAGLTFIGSSLRIKWNNKTLSVTDNKIEADGKTIADVKIEGNSFYLNFDYDNLEGKSPEVSYSALLNERAIVGKNGNDNIVEYYYSNNPNKGTTHKGTEKPQEGEGVSKKTDKKVVYTYRVAFKKIGKGNISLAGAVFGIYSDNDAKQLVDIVVTNENGYGASNQVGQGTYYIKEIKAPLGYSLNTNVYKVSTSWEKATTTSEVSWSEIKYTTNDSEKAIGTTTVGWLLNNIFYKENPGDGGQFAYINKVTEDKSTTTKVEKNQGAGAGTVLLETEIPNTKLGELPSTGSIGTYLFKAIGSAAMIGAIGIYIVKRRKA
>NZ_LS483407.1|WP_002986472.1|124874_125717_+|class-C-sortase
MTERLKNLGILLLFLLGTAIFLYPTLSSQWNAYRDRQLLSTYHKQVTQKKPSEMEEVWQKAKAYNARLGIQPVPDAFSFRDGIHDKNYESLLQIENNDIMGYVEVPSIKVTLPIYHYTTDEVLTKGAGHLFGSALPVGGDGTHTVISAHRGLPSAEMFTNLNLVKKGDTFYFRVLNKVLAYKVDQILTVEPDQVTSLSGVMGKDYATLVTCTPYGVNTKRLLVRGHRIAYHYKKYQQAKKAMKLVDKSRMWAEVVCAAFGVVIAIILVFTYSRVSAKKSK
>NZ_LS483407.1|WP_032460921.1|125902_126562_-|hypothetical-protein
MKRCNKYLFTSLLAASMLFSSYKSVHAHDNIDEKGKVHLYWQGNYYVDNYVDYTKTLVDNSIEWTVTFNSAKEQWVYPDFSVFLPKGVKAPTEITYEHHYWDGTVHSEKHNNTQWHYDWEKQQTNFNQEFDKFPGYTGWSPSLDKFYKLKNDGKFSHVLVDTYGRQSHTYFSHKMVWKFKTELEDNYKNKWDKLPFIAGIKQNNPLAASFPSYKGEFGE
>NZ_LS483407.1|WP_168429870.1|126915_128322_+|short-chain-fatty-acid-transporter
MNNIKTKKRFMDRYIDGFMKWMPESLFICFILTFLVVTMSVLMTDSPFIGTEKTGGIIYGWVNGFWGLLSFAMQMTILLATGNAVASSPPAHKMFKSLAKLPQTRTQIFIFSIVVGSIFGFLHWGLGMMVAIVFGKELLVQARQKGIKVHTPLFVATLFFTFLPATSGLSGAAVLYSATPDYLRNSVADAYKQVVPESVPLTESVLNLPFISLLVVCMLVPLCFALLVHPKDETKIMELDDEIYHHSLDTASHVVIARNTPAEKMNASRLVMYLVGGAIVSYSLYHFSVVGLSGLDLNSFNFLFLGLGLLLCGQQGPEYYGSLFKDGVMSSWGLVLQFPFYAGIFGIIQSTGLGLEISHFFVAISNGTTWPVFAYLYSALLNIAIPSGGSKFVIEAPYIVPATIEVGNDLGKILQAYQLGDATTNLIVPFWALSYLSNFKLKFNQIVAYTIPCVLVVTGIAIIYLFVF
>NZ_LS483407.1|WP_032463130.1|128392_129304_-|LysR-family-transcriptional-regulator
MNISSLAYFIEIVNCDFNLTKAAKKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKKLFLKEVDFAILLTPTTLDATIADIDILLRDQLCLYMSHKTFQETFDSNPNISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRYSSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFMNQRF
>NZ_LS483407.1|WP_032463131.1|129424_130609_+|acetyl-CoA-C-acetyltransferase
MTKEVVITSAYRTPIGNFGGVFKSLSAVDLGVTVVTKILVDTGLKSDAIDEVIFGNVLHAGLGQNVARQVALNAGLSYDTPAFTIDMVCGSGLKAVELGAQKIQTGNADIVLVGGTENMSQAPYVLQCQRWGSRMGDSKVVDTMLKDGLSDAFAGYHMGITAENIVQQYGLTREEQDAFAADSQRKAQLAIEKGRFKEEIAPVTIPQRKGEPLLVDQDEYPKFGTTVDKLAKLRPAFIKDEGTVTAGNASGINDGAAAILLMSKEKAEELGLPILAKITSYASAGVDPSIMGCGPIPATKKALAKAQLTIDDIDLIEANEAFAAQALAVSRDLGFDNEKVNVNGGAIALGHPIGASGARILVTLLAEMAKRDVRHGLATLCIGGGQGQSIIVTR
>NZ_LS483407.1|WP_002986455.1|130620_131280_+|CoA-transferase-subunit-A
MKENKRIAIAEAISHIKDGDTIMVGGFMANGTPEALIDALVDKGTKDLTLICNDAGFVDRGVGKMVANHQFKTIYATHIGLNKEAGRQMTAGETTIELIPQGTFAEKIRIGAYGIGGFYTPTGVGTLVAEGKETKTIKGKTYLLEYPFEADVALIFANKADEMGNLQYSGSENNFNQLMAACAKTTIVQAREIVPVGTIQPECVHTPHIFVDYIVKEGV
>NZ_LS483407.1|WP_002987854.1|131282_131930_+|3-oxoacid-CoA-transferase-subunit-B
MAVALSKEEIQNRIAKRVAKELEDGTLVNLGIGLPTKVANFVPEEMTVYFQSENGFIGLGPKSDDPNSTIVNAGGQPVTVYPGAAFFNSADSFGIIRGGHVDLTVLGALEIAENGDIANYLIPGKMVPGMGGAMDLLVGAKKVIVAMEHTNKGKHKLLKECTLPLTAKGVVDLIITEMGVFKVTPDGIQVIEISEGFTFDEVQAATGVPLSIAEG
>NZ_LS483407.1|WP_002986450.1|132051_132732_-|transcriptional-regulator
MDKETLNYWKTVITFLHDVLGDNYEIILHVIDKNDIYIGELVNSHISGRSKQSPLTTFALDLITNKVYKEKDFVTNYKAIVSPQHKEVRGSTFFIKDKKGNLEGMLCINLDISAYQGVARDLLKLVNLNLEHFIPTAKEPKTVTPQPEEAVEILTSNIQDIIGQIIDPSLLRHNVHLSQDVKIDIVAKLYEKGVFQLKGAVSKVADILCISEPSVYRYLKKIEADQ

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Crispr_ID: NZ_LS483407_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483407_2

781240-781605

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	PILER-CR
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CRT

5 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_LS483407_2

>merge|NZ_LS483407|2|781240-781605|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACGCTTACAAAAGCAAGTACAGTCTGCAATAGGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACCTAAAACATGGTCTGCTATTAAATCCAAGCGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACTTATAGAAAGAGAAAGTAACAGTAAAACAGGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACCTATCTAGTAAGTCAATCGCATTTCCCCAAGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACCTGTTCGATAAATAGAAGTGTCCCAGAATGGTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC

>NZ_LS483407|2|1|781240-781539|PILER-CR
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GCTTACAAAAGCAAGTACAGTCTGCAATAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTAAAACATGGTCTGCTATTAAATCCAAGC
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TTATAGAAAGAGAAAGTAACAGTAAAACAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTATCTAGTAAGTCAATCGCATTTCCCCAA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC

>NZ_LS483407|2|2|781240-781605|CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GCTTACAAAAGCAAGTACAGTCTGCAATAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTAAAACATGGTCTGCTATTAAATCCAAGC
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TTATAGAAAGAGAAAGTAACAGTAAAACAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTATCTAGTAAGTCAATCGCATTTCCCCAA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTGTTCGATAAATAGAAGTGTCCCAGAATG
GTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC

>NZ_LS483407|2|1|781240-781605|CRT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GCTTACAAAAGCAAGTACAGTCTGCAATAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTAAAACATGGTCTGCTATTAAATCCAAGC
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TTATAGAAAGAGAAAGTAACAGTAAAACAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTATCTAGTAAGTCAATCGCATTTCCCCAA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CTGTTCGATAAATAGAAGTGTCCCAGAATG
GTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483407.1\|WP_032460891.1\|779277_780147_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_LS483407.1\|WP_002989934.1\|788164_788656_+\|PTS-system-mannose/fructose/N-acetylgalactosamine-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|225976
NZ_LS483407.1\|WP_111674568.1\|785927_786365_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_LS483407.1\|WP_010922253.1\|782248_784081_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_LS483407.1\|WP_002989949.1\|780474_781137_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_LS483407.1\|WP_111674569.1\|786494_787514_+\|YeiH-family-putative-sulfate-export-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_LS483407.1\|WP_111674564.1\|771404_772535_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_LS483407.1\|WP_002989951.1\|780143_780485_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_LS483407.1\|WP_002984851.1\|774060_774693_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_LS483407.1\|WP_111674571.1\|790441_792091_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_LS483407.1\|WP_111674565.1\|773296_774061_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_LS483407.1\|WP_172453375.1\|784269_785742_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|237171
NZ_LS483407.1\|WP_002984844.1\|788672_789482_+\|PTS-mannose/fructose/sorbose/N-acetylgalactosamine-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226238
NZ_LS483407.1\|WP_002984856.1\|769221_770577_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_LS483407.1\|WP_002989935.1\|787720_788146_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NZ_LS483407.1\|WP_023605092.1\|772544_773297_+\|acyl-[acyl-carrier-protein]-thioesterase	unknown	unknown	gnl\|CDD\|226401
NZ_LS483407.1\|WP_111674570.1\|789478_790306_+\|PTS-mannose/fructose/sorbose-transporter-family-subunit-IID	unknown	unknown	gnl\|CDD\|226239
NZ_LS483407.1\|WP_002984836.1\|792094_792883_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|227095
NZ_LS483407.1\|WP_023611160.1\|770700_771342_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483407.1\|WP_111674566.1\|775171_779278_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044

Protein	Function_ID	Function_description	E-value
NZ_LS483407.1\|WP_032460891.1\|779277_780147_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.0115e-131
NZ_LS483407.1\|WP_002989934.1\|788164_788656_+\|PTS-system-mannose/fructose/N-acetylgalactosamine-transporter-subunit-IIB	gnl\|CDD\|225976	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism].	8.80769e-55
NZ_LS483407.1\|WP_111674568.1\|785927_786365_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.50698e-83
NZ_LS483407.1\|WP_010922253.1\|782248_784081_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_LS483407.1\|WP_002989949.1\|780474_781137_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.6851e-120
NZ_LS483407.1\|WP_111674569.1\|786494_787514_+\|YeiH-family-putative-sulfate-export-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	4.68126e-104
NZ_LS483407.1\|WP_111674564.1\|771404_772535_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_LS483407.1\|WP_002989951.1\|780143_780485_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.79e-58
NZ_LS483407.1\|WP_002984851.1\|774060_774693_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	1.04206e-87
NZ_LS483407.1\|WP_111674571.1\|790441_792091_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	6.68526e-77
NZ_LS483407.1\|WP_111674565.1\|773296_774061_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.36032e-126
NZ_LS483407.1\|WP_172453375.1\|784269_785742_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	1.21459e-11
NZ_LS483407.1\|WP_002984844.1\|788672_789482_+\|PTS-mannose/fructose/sorbose/N-acetylgalactosamine-transporter-subunit-IIC	gnl\|CDD\|226238	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism].	3.81104e-76
NZ_LS483407.1\|WP_002984856.1\|769221_770577_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_LS483407.1\|WP_002989935.1\|787720_788146_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	3.64459e-31
NZ_LS483407.1\|WP_023605092.1\|772544_773297_+\|acyl-[acyl-carrier-protein]-thioesterase	gnl\|CDD\|226401	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism].	2.32247e-107
NZ_LS483407.1\|WP_111674570.1\|789478_790306_+\|PTS-mannose/fructose/sorbose-transporter-family-subunit-IID	gnl\|CDD\|226239	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism].	7.03921e-110
NZ_LS483407.1\|WP_002984836.1\|792094_792883_+\|response-regulator-transcription-factor	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	5.79862e-82
NZ_LS483407.1\|WP_111674566.1\|775171_779278_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0

>NZ_LS483407.1|WP_002989949.1|780474_781137_+|type-II-A-CRISPR-associated-protein-Csn2
MNLNFSLLDEPIPLRGGTILVLEDVCVFSKIVQYCYKYEEDSELKFFDRKMKTIKESEIMLVTDILGFDVNSSTILKLIHADLESQFNEKPEVKSMIDKLVATITELIVFECLENELDLEYDEITILELIKSLGVKVETQSDTIFEKCLEILQIFKYLTKKKLLIFVNSGAFLTKDEVASLQEYISLTNLTVLFLEPRELYDFPQYILDEDYFLITKNMV
>NZ_LS483407.1|WP_002989951.1|780143_780485_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTDTAEERKAYRKFRKFLLSEGFIMHQFSIYSKLLLNNTANNAMIGRLREHNPNKGNITLLTVTEKQFARMIYLHGERNNCIANSDERLVFLGEAFDES
>NZ_LS483407.1|WP_032460891.1|779277_780147_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDAYKTELIHLSEIDILLLETTDIVLSTMLVKRLVDENVLVIFCDDKRLPTAMLMPFYGRHDSSLQLGKQMSWSETVKSQVWTTIIAQKILNQSCYLGACSYFEKSQSIMDLYHGLENFDPSNREGHAARIYFNTLFGNDFSRDLEHPINAGLDYGYTLLLSMFAREVVVSGCMTQFGLKHANQFNQFNFASDIMEPFRPLVDKIVYENRNQPFPKIKRELFTLFSDTFVYNGKEMYLTNIVSDYTKKVVKALNNEGKGVPEFRI
>NZ_LS483407.1|WP_111674566.1|775171_779278_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MDKKYSIGLDIGTNSVGWAVITDDYKVPSKKLKVLGNTDRHGIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLADSTDKVDLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASRVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDATLLSDILRVNSEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLAKLNREDLLRKQRTFDNGSIPYQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSDILKEYPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKVGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVRVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKDPIDFLEAKGYKEVRKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQLGGD
>NZ_LS483407.1|WP_002984851.1|774060_774693_+|TIGR01906-family-membrane-protein
MVENTKLLCSWVWLLALAILITIYSTWLWYPLEVDHLKLEQVVFMSKDAILHNYNGLLNYLTNPFVTRLEFANFHSSADGLKHFADVKWLFHLTQVVFLGLLYPTLKTFTQRLKTKRFWLLQKPLILAALFPLMIGLMASFIGFEHFFTLFHQVLFVGDSSWLFDPLKDPVIWILPEVFFLHCFLFFMIVYEIILWSLVGLARWQRLNVE
>NZ_LS483407.1|WP_111674565.1|773296_774061_+|TIGR01457-family-HAD-type-hydrolase
MPYKGYLIDLDGTIYQGENRIPAGERFIKRLQERGIPYLLVTNNTTRTPEMVQSMLANQFNVETGIETIYTATMATVDYMNDMNRGKTAYVIGETGLKSAIAAAGYVEELENPAYVVVGLDSQVTYETLAIATLAIQKGALFIGTNPDLNIPTERGLMPGAGALNALLEAATRVKPVFIGKPNAIIMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPEEVPTLPIQPDHVLSSLDEWRL
>NZ_LS483407.1|WP_023605092.1|772544_773297_+|acyl-[acyl-carrier-protein]-thioesterase
MGLSYQEELTLPFELCDVKSDIKLPLLLDYCLMVSGRQSAQLGRSNNNLLVDYKLVWIVTDYEITIHRLPHFQETITIETKALSYNKFFCYRQFYIYDQEGDLLVDILAYFALLNPDTRKVATIPEDLVAPFETDFVKKLHRVPKMPLLEQSIDRDYYVRYFDIDMNGHVNNSKYLDWMYDVLGCAFLKTHQPLKMTLKYVKEVSPGGQITSSYHLDQLTSYHQIISDGQLNAQAMIEWRAIKQTESETD
>NZ_LS483407.1|WP_111674564.1|771404_772535_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSKKPTSAYVHIPFCTQICYYCDFSKVFIQNQPVDAYLRALIQEFDSYGIRDLKTLYIGGGTPTAITAKQLEYLLNHLERNLNLDDLEEFTIEANPGDLTPEKIAVLQRSAVNRISLGVQTFNNKQLKQIGRSHNEEQIYSTIANLKAAGFHNISIDLIYALPGQTLDQVKENVAKALALDIPHLSLYSLILEHHTVFMNKMRRGKLNLPTEDLEAEMFEYIISEMEANGFEHYEISNFTKPGFESRHNLMYWDNVEYFGCGAGASGYLNGIRYQNRVPIQHYLKAVEAGNARLNEEVLRKEEMMEEELFLGLRKKTGVSIQRFQEKFGISFEERYGNIVRELQNQGLLVKDDAFVRMTKKGLFLGDSVAERFILD
>NZ_LS483407.1|WP_023611160.1|770700_771342_+|hypothetical-protein
MTKQQIEKLADLLPPFAATLYLDMIPEFQEGYASYVYQTPKQDIQKRRIKQLTKNFERLLDTPSFYVMPVTRKTAEQLLADKGLAYHLLSTVAANQVFAAAVNEDQTLFQVLRNGARVAFVILQEKGEFLEMTLGILETVTENEVPAAIVEAVQTYLLTDMQEKLPSLSIMVSQESSKLFYQEQGFVLLAKGCKPGNENDSDVCQLVKYFSKP
>NZ_LS483407.1|WP_002984856.1|769221_770577_+|phosphoglucosamine-mutase
MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETERPKVFVARDTRISGEMLESALIAGLLSVGIEVYKLGVLATPGVSYLVRTEKASAGVMISASHNPALDNGIKFFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEKPNGLNINDGVGSTHPEQLQELVKETGADLGLAFDGDSDRLIAVDETGEIVDGDRIMFIIGKYLSEKGLLAHNTIVTTVMSNLGFHKALDKQGINKAITAVGDRYVVEEMRSSGYNLGGEQSGHVIIMDYNTTGDGQLTAIQLAKVMKETGKSLSELAAEVTIYPQKLVNIRVENSMKERAMEVPAIANIIAKMEDEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRTEIGCDN
>NZ_LS483407.1|WP_010922253.1|782248_784081_+|elongation-factor-4
MNSQDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNPAKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVHTTDEDMIEVSNPSEFPDPTRVAFIEEPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDMSEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKIIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDTKK
>NZ_LS483407.1|WP_172453375.1|784269_785742_+|LPXTG-cell-wall-anchor-domain-containing-protein
MNKTKQNKTKQNKTKQNKTKHSLLCRYGLTSAAALLLTFGGVSAVKADEQSNIEALQSQLQALRENLPKVGDNIPKHDVFRQHVFYKHLEEFEARLDFYLKTLDGSLSQLQGPRGEQGLRGEAGPEGPQGKTGPAGPVGPAGPRGAQGLRGEAGPAGPVGPAGPRGAQGLRGEAGPEGPQGPAGKDGEDGAKGETGPAGPAGPRGEQGLRGETGPEGPQGPAGKDGEDGAKGETGPAGPAGPRGEQGLRGETGPEGPQGKTGPAGPAGPRGEQGLQGDRGETGAKGDRGETGPAGPAGKDGEAGAQGPMGPAGQNGKDGLPGKDGKDGQDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGQPGKPAPKTPEVPQKPDTAPHTPKTPQIPGQSKDVTPAPQNPSNRGLDKPQTQGGNQLAKTLAAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN
>NZ_LS483407.1|WP_111674568.1|785927_786365_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MEISDELKQRIGDLSYEVTQHAATESPFTGEYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVTNHDDSSYGMRRVEVKSREAGSHLGHVFSDGPKEAGGLRYCINSAALKFIPYEQMEKEGYAQWLTLFDET
>NZ_LS483407.1|WP_111674569.1|786494_787514_+|YeiH-family-putative-sulfate-export-transporter
MSTHLRKLPGLLLCLLLALPAWYLGRLFPIIGAPVFAILLGMLLALFYEHRDKTKEGISFTSKYILQTAVVLLGFGLNLTQVMAVGMQSLPIIISTIATALLVAYGSQKWLRLDFNTATLVGVGSSICGGSAIAATAPVIKAKDDEVAKAISVIFLFNMLAALLFPSLGQLLGLSNEGFAIFAGTAVNDTSSVTATATAWDALHHSNTLDGATIVKLTRTLAILPITLGLSLYRAKKEHDIVTEENFSLRKSFPRFILFFLLASLITTLMTSFGVSADVFHSLKTLSKFFIVMAMAAIGLNTNLVKLIKTGGQAILLGAICWVAITLVSLAMQLSLGIW
>NZ_LS483407.1|WP_002989935.1|787720_788146_+|PTS-sugar-transporter-subunit-IIA
MKRKFLIGSHGRLASGLQSSIDILAGMGQALETIDAYVDDSDYTSQIDDFIAGVAADEQGLIFTDLLGGSVNQKMVTAVMNSGKDNIFLITNSNLATLLSLVFLKPGEALTKDEIVTVINESQVQLVDLVPETNSEDDFFD
>NZ_LS483407.1|WP_002989934.1|788164_788656_+|PTS-system-mannose/fructose/N-acetylgalactosamine-transporter-subunit-IIB
MITQIRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEITQMTLKMAVPNGMKLLIRSVEDSIKLFNDPRATDKRIFVIVNSVKDACAIAKEVPDLEAVNVANVGRFDKSDPASKVKVTPSLLLNPEEMAAAKELVSLPELDVFNQVLPSNTKVHLSQLVN
>NZ_LS483407.1|WP_002984844.1|788672_789482_+|PTS-mannose/fructose/sorbose/N-acetylgalactosamine-transporter-subunit-IIC
MLVPATMAALAVLICFGGNYLTGQSMMERPLVVGLVTGLLLGDMKVGILMGASLEALFLGNVNIGGVIAAEPVTATAMATTFTIISHIDQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFAPMVDKAAAANHQGKLVMLHYGTWIIYYLIIASISFIGILVGSGPVNAFVEHIPQNLMNGLSAAGGLLPAVGFAMLMKLLWTNKLAVFYLLGFVLTAYLKLPAVAVAALGAVICVISSQRDLELDAITRGAISKQTTFDSKESEEEDFFA
>NZ_LS483407.1|WP_111674570.1|789478_790306_+|PTS-mannose/fructose/sorbose-transporter-family-subunit-IID
MTSQDNLTKEDRKMLRSVFWRSWTMNASRTGATQYHAVGVIYTLLPVINRFYKTDKDKAEALVRHTTWFNATMHINNFIMGLVASMEKKNSEDPDFDASAITAVKASLMGPISGVGDSFFWGILRVIAAGIGISLASAGSAMGAVVFLLLYNIPAFIIHYYSLYGGYSVGAGFIKKLYESGGIKIVTKTSSMLGLMMVGSMTASNVKFKTILTVAAKGAKEAASIQDYLDQLFIGIVPLLVTLAAFWLLRKKVNINWIMFGIMFLGIILGLLGIC
>NZ_LS483407.1|WP_111674571.1|790441_792091_+|sensor-histidine-kinase
MRGEQVEEHFKKQLQDDISRHFSYQSLMLSLLLIGLFIIFSLAPQQLGLYRDINATATRYHRLISKQEALLDDLGKNSLLPFLNKNLSTADLSKHYFHLRHSSQTSPELLLFSSNQGLLFASNPHLGNAFSKSVYIQEVLRAAHPPKTLFKVAMDSEDGHYLMIIKPMIDQNQLKGYAFLVMSGKDFLHPTKTLTSELVIADKLDNTFTFSNREFIASSLDKINSQYLHHYFVFQDNRAFITRKVALQGGLWLYMYRPLIPMVSVMLFSLISSAVIFVILQRKSSGLANRIAAKNSRAINQMVRDMSAISRQEKRRIDLESQDEFQYLSDQINQMVERLQQLHDKTLDLETQKLLFEKRMLEAQFNPHFLYNTLETILITSHYDSALTEKIVIQLTKLLRYSLTDSSKPVLLKDDLSVIESYLVINQVRFEELQYSINLSPDLDSLAVPKLFLLPLIENAIKYGLKERHDVKINIACYYQDDHIIFSVRDNGSGIDAHHQKVIREQLEAGESHHGLINSYRRLKYHFSEVSLVFDQGDKQFNVSYHVKE
>NZ_LS483407.1|WP_002984836.1|792094_792883_+|response-regulator-transcription-factor
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMTAFDMFEATKDQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAKIEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAHFQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYLGQTVKAFKEEHFMKDTDRSKPC

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Crispr_ID: NZ_LS483407_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483407_3

960201-960302

Orphan

Consensus_repeat	Method
AATAATTGGTATAGTCTAATTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483407_3

>merge|NZ_LS483407|3|960201-960302|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATACCGATAAAAACAGTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACATAAAATTGGTATAGTCTAATTATA

>NZ_LS483407|3|3|960201-960302|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATA	CCGATAAAAACAGTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACA
TAAAATTGGTATAGTCTAATTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483407.1\|WP_002989607.1\|969048_969663_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_LS483407.1\|WP_002984444.1\|962665_963679_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_LS483407.1\|WP_002992415.1\|956417_957047_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LS483407.1\|WP_111674603.1\|967053_967425_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_LS483407.1\|WP_014635534.1\|971280_973545_-\|glycogen/starch/alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_LS483407.1\|WP_111674601.1\|951376_952699_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_LS483407.1\|WP_032462884.1\|968132_968918_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483407.1\|WP_111674602.1\|958335_960150_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LS483407.1\|WP_002984447.1\|961100_962603_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_LS483407.1\|WP_002989605.1\|970403_971024_+\|DUF3862-domain-containing-protein	unknown	unknown	gnl\|CDD\|289729
NZ_LS483407.1\|WP_002984437.1\|967424_968123_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_LS483407.1\|WP_014635492.1\|952818_954054_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_LS483407.1\|WP_002989626.1\|957804_958140_-\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_LS483407.1\|WP_002992413.1\|955565_956402_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_LS483407.1\|WP_032462886.1\|963758_966869_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|180917
NZ_LS483407.1\|WP_111674600.1\|948529_950848_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_LS483407.1\|WP_002984469.1\|947918_948167_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_LS483407.1\|WP_009880829.1\|954423_955197_-\|CAMP-factor-pore-forming-toxin-Cfa	unknown	unknown	gnl\|CDD\|369335
NZ_LS483407.1\|WP_002992417.1\|957056_957698_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LS483407.1\|WP_002984449.1\|960325_960883_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044

Protein	Function_ID	Function_description	E-value
NZ_LS483407.1\|WP_002989607.1\|969048_969663_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.14841e-31
NZ_LS483407.1\|WP_002984444.1\|962665_963679_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_LS483407.1\|WP_002992415.1\|956417_957047_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.61041e-111
NZ_LS483407.1\|WP_111674603.1\|967053_967425_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	3.14958e-49
NZ_LS483407.1\|WP_014635534.1\|971280_973545_-\|glycogen/starch/alpha-glucan-family-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_LS483407.1\|WP_111674601.1\|951376_952699_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NZ_LS483407.1\|WP_111674602.1\|958335_960150_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LS483407.1\|WP_002984447.1\|961100_962603_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_LS483407.1\|WP_002989605.1\|970403_971024_+\|DUF3862-domain-containing-protein	gnl\|CDD\|289729	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862). Structure 3D4E shared structural similarity to beta-lactamase inhibitory proteins (BLIP) which already include 1XXM, 1S0W, 1JTG, 2G2U, 2G2W, 2B5R, and 3due. All of structures are involved in beta-lactamase inhibitor complex. (REF http://www.topsan.org/Proteins/JCSG/3d4e).	6.81674e-87
NZ_LS483407.1\|WP_002984437.1\|967424_968123_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.28377e-64
NZ_LS483407.1\|WP_014635492.1\|952818_954054_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	5.43501e-96
NZ_LS483407.1\|WP_002989626.1\|957804_958140_-\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.02984e-64
NZ_LS483407.1\|WP_002992413.1\|955565_956402_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.07683e-110
NZ_LS483407.1\|WP_032462886.1\|963758_966869_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|180917	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.	0
NZ_LS483407.1\|WP_111674600.1\|948529_950848_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LS483407.1\|WP_002984469.1\|947918_948167_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.43969e-13
NZ_LS483407.1\|WP_009880829.1\|954423_955197_-\|CAMP-factor-pore-forming-toxin-Cfa	gnl\|CDD\|369335	pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of several bacterial CAMP factor (Cfa) proteins which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin).	2.06073e-97
NZ_LS483407.1\|WP_002992417.1\|957056_957698_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.99371e-71
NZ_LS483407.1\|WP_002984449.1\|960325_960883_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.3728e-38

>NZ_LS483407.1|WP_111674602.1|958335_960150_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVANANQTNLIKSVGRIADLRAKIGIDVAGSTGIGHTRWATHGQSTEDNAHPHTSQTGRFVLVHNGVIENYLHIKTEFLAGHDFKGQTDTEIAVHLIGKFVEEDKLSVLEAFKKALSIIEGSYAFALMDSQATDTIYVAKNKSPLLIGLGEGYNMVCSDAMAMIRETSEFMEIHDKELVILTKDKVTVTDYDGKELIRDSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRQLISTYADETGNVQVDPAIITSIQEADRLYILAAGTSYHAGFATKNMLEQLTDTPVELGVASEWGYHMPLLSKKPMFILLSQSGETADSRQVLVKANAMGIPSLTVTNVPGSTLSREATYTMLIYAGPEIAVASTKAYTAQIAALAFLAKAVGEANGKQEALDFNLVHELSLVAQSIEATLSEKDLVAEKVQALLTTTRNAFYIGRGNDYYVAMEAALKLKEISYIQCEGFAAGELKHGTISLIEEDTPVIALISSSQLVASHTRGNIQEVAARGAHVLTVVEEGLDREGDDIIVNKVHPFLAPIAMVIPTQLIAYYASLQRGLDVDKPRNLAKAVTVE
>NZ_LS483407.1|WP_002989626.1|957804_958140_-|alkylphosphonate-utilization-protein
MSLPNCLQCQSEYVYEDGLLLICPMCAFEWTPGEEATEEEGLVVLDSNGVRLSDGDTITVVKDLKVKGAPKDLKQGTRVKNIRLVEGDHNIDCKIDGFGAMKLKSEFVKKI
>NZ_LS483407.1|WP_002992417.1|957056_957698_-|amino-acid-ABC-transporter-permease
MTYIQQVLPSLLDGALVTLQVFFIVIILSIPLGAILAFLMKIPFKPLQWFLTLYVWMMRGTPLLLQLIFFYYVLPSVGISFDRMPAAILAFTLNYAAYFAEIFRGGIEAIPKGQYEAAKVLKLKPLQTIRYIILPQVFKIVLPSVFNEVINLVKDSSLVYVLGVGDLLLASKTAANRDATLAPMFIAGLIYLLLIGLVTIISKQVEKRFNYYQ
>NZ_LS483407.1|WP_002992415.1|956417_957047_-|amino-acid-ABC-transporter-ATP-binding-protein
MLELKNISKQFGQKTIFDGFNLTVQDGEVLSLVGPSGGGKTTLLRMLAGLESIDSGQVFYNGEDVGIDHLENRNLLGFVFQDFQLFPHLTVLDNLTLSPTITMGKQKSDAKEKALDLLARLGLKEHAQVYPYSLSGGQKQRVALARAMMIDPQIIGYDEPTSALDPELRQTVEALIVQNREMGITQIVVTHDLVFAEAISDRIIRVNPK
>NZ_LS483407.1|WP_002992413.1|955565_956402_-|amino-acid-ABC-transporter-substrate-binding-protein
MIIKKRTVAILAIASSFFLVACQATKGLKSGDAWGVYQKQKSITVGFDNTFVPMGYKDESGKCKGFDIDLAKEVFHQYGLKVNFQAINWDMKEAELNNGKIDVIWNGYSITKERQEKVAFTDSYMRNEQIIVVKKRSDIKTISDMKHKVLGAQSASSGYDSLLRTPKLLKDFIKNKDANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMIPTTFENEAFSVGLRKEDKTLQAKINRAFRVLYQNGKFQAISEKWFGDDVATANIKS
>NZ_LS483407.1|WP_009880829.1|954423_955197_-|CAMP-factor-pore-forming-toxin-Cfa
MKPKHLLCLSTVVAGLALFSTMTHSVLADDASNPDTILMNNNQANLQRDALVQKLDEGHQQLEAIKHEAKGTDIEATVNKAIDAVDHMKSSIRFNTETIYDFSSIGARVEALSDAIKAIVFSTTQLTHKVEKAHTDMGFAITKLVIRIIDPFASVDAIKAQVQEIKALEEKVINYPDLQPTDRATIYTKAKLNKAIWNTRLERDKKVLGIKPFDVYNRLNKAITHAVGVQLNPTTTVQQVDDEVIAVQNALETALKS
>NZ_LS483407.1|WP_014635492.1|952818_954054_+|cation-diffusion-facilitator-family-transporter
MTQDPIANLKLARKGPIVSIIVYLLLSVAKLLAGYLLNASSLIADGFNNLSDIVGNVALLIGLHLASQPADANHKFGHWKIEDLSSLVTSFIMFLVGFQVLIHTIKSIFSGQQVDIDPLGAIVGIVSAFVMLGVYVFNKRLSKRVKSSALVAASKDNLADAVTSIGTSIAIIAASLHLPVIDHIAAMIITFFILKTAFDIFMESSFSLSDGFDSRHLKKYEKAILEIPKIVSVKSQRARTYGSNVYLDIVLEMNPDLSVYESHSITEKVEQLLSDQFSIYDIDIHVEPAMIPEEEIFDNVAKKLYRYEKLILSKVPDYDHYIAKSFQLIDANGQTVNYEQFLNQEIYYPSNFNHFQIESISQKTMLVTYQLNGNQRTSIWRRHESWSLLFHQITPIAKKQLHHTHYRIVKM
>NZ_LS483407.1|WP_111674601.1|951376_952699_+|sodium:alanine-symporter-family-protein
MIALVKLIDNLVWGPPLLILLVGTGIYLTSRLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYTEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAILFAGSGILVALFGIGTFAQVNSITSSLGHSFGLSPQMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVFQSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFVLMVGLGGFLKLELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK
>NZ_LS483407.1|WP_111674600.1|948529_950848_-|DNA-helicase-PcrA
MNPLLNGMNDRQAQAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKQLNIDPKKWNERSILGTISNAKNDLLDEKGYEAQAADMYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVLAYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNRRPKKLWTQNADGEQLVYYRANDERDEAVFVASTISNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDLIAYLTIVANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAIMDLANILGQLRQDLDQMSITDLAEALLEKTDYLDSLRLQNTLESQARIENIEEFLSVTKNFDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRASEDPDELEEERRLAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVRFSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLPFGSNSSVEEVTWQIGDIAHHKKWGDGTVLEVSGSGKTMELKIKFPEVGLKKLLASVAPIEKK
>NZ_LS483407.1|WP_002984469.1|947918_948167_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGLIWTLIVGALIGVIAGALTKKGGSMGWIANIAAGLVGSSVGQALLGSWGPSLAGMSLIPSVIGAVIVVMITSFVLNKTNN
>NZ_LS483407.1|WP_002984449.1|960325_960883_-|signal-peptidase-I
MVKRDFIRNILLLLIVIIGAILLRIFVFSTFKVSPETANTYLKSGDLVTIKKNIQPKYKDFVVYRVGKKDYVSRVIAVEGDSVTYMDDIFYLNNMVESQAYLEKMKAHYLNHAPFGTLYTDDFTVATITADKYQKVPKGKYLLLNDNRKNTNDSRRFGLINASQIKGLVTFRVLPLSDFGFVEVE
>NZ_LS483407.1|WP_002984447.1|961100_962603_-|pyruvate-kinase
MNKRVKIVATLGPAVEIRGGKKYGEDGYWAGQLDVEESAKKIAELIEAGANVFRFNFSHGDHKEQGDRMATVRLAEEIARQKVGFLLDTKGPEMRTELFADDAKEFSYVTGEKIRVATTQGIQSTRDVIALNVAGSLDIYDEVEVGHTILIDDGKLGLKVIDKDIATRQFIVEVENDGIIAKQKGVNIPNTKIPFPALAERDNADIRFGLEQGLNFIAISFVRTAKDVEEVREICRETGNDHVQLFAKIENQQGIDNLDEIIEAADGIMIARGDMGIEVPFEMVPVFQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGTDATMLSGESANGKYPVESVRTMATIDRNAQTLLNEYGRLDSSAFPRTNKTDVIASAVKDATHSMDIKLVVTITETGNTARAISKFRPDADILAVTFDEKVQRALMINWGVIPVLAEKPASTDDMFEVAERVAVEAGLVQSGDNIVIVAGVPVGTGGTNTMRVRTVK
>NZ_LS483407.1|WP_002984444.1|962665_963679_-|6-phosphofructokinase
MKRIAVLTSGGDAPGMNAAIRAVVRKAISEGMEVYGINRGYAGMVDGDIFPLGSKEVGDKISRGGTFLYSARYPEFAQLEGQLAGIEQLKKHGIEGVVVIGGDGSYHGAMRLTEHGFPAVGIPGTIDNDIAGTDYTIGFDTAVNTAVEAIDKLRDTSSSHGRTFVVEVMGRNAGDIALWAGIASGADQIIVPEEEFDIEKVASTIQYDFEHKGKNHHIIVLAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDRVIASWMGSHAVELLKEGKGGLAVGIHNEELVESPILGTAEEGALFSLTEEGKIIVNNPHKARLDFAALNRSLSQ
>NZ_LS483407.1|WP_032462886.1|963758_966869_-|DNA-polymerase-III-subunit-alpha
MFAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPVLGLEVEILYQERQVLLNLIAQNTQGYHQLLKISTAKMSGKLHMDYLCQHLEGIAVIIPSKGWSDTLVVPFDYYIGVDQYTDLSHMDSKRQLIPLRTVRYFAQDDMETLHMLHAIRDNLSLAETPVVESDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPHFNRDKSAKQELQELTEAGLKEKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKSGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMMNYSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRDFAYWIIEQRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGLLVFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGMSKHPLIDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVENHQFDSQISEILGAFPGTTPVVIHYQKNKETIALTKIQVHVTENLKEKLRPFVLKTVFR
>NZ_LS483407.1|WP_111674603.1|967053_967425_+|GntR-family-transcriptional-regulator
MSWKFDEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDAQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ
>NZ_LS483407.1|WP_002984437.1|967424_968123_+|ABC-transporter-ATP-binding-protein
MAHLLQLHHVSKSYREKKAIDDLTITIPNGKIIGLLGPNGSGKTTLIKLINGLLQPNKGEIVIDGYRPCVETKKIISYLPDTTYLNENMRIKDMLEFFSDFYSDFDKSKATSLLRDLELDPEDRFKTLSKGNKEKVQLILVMSRKARLYVLDEPIGGVDPAARDYILKTIINSYCENASVIISTHLISDIEPILDEVIFLKQGRLFLSGNADDLRQEYQQSIDSLFRETYKV
>NZ_LS483407.1|WP_032462884.1|968132_968918_+|hypothetical-protein
MFGKLLKYEFRSIGKWYFALNAFVIAIAAILSFTIKLFAQSNSDGLFGVLTNKMLPLTLGLTFGSLIAGSLLSTLLIIIKRFSKSVFGREGYLTLTLPVNSHQIILSKLLASFICSVFNTIILAFAIAIVIVPMFNINELLEGFFNSFKVDYFINMLTVLAYVLLSTFTSILLIYLSISIGQLFSNRRGLMAFIAYFILVILISVAATYVHSHIFNINTSADSFPFTEQKTIYLLILEQFIEMIMFYLATNFIIKNKLNLQ
>NZ_LS483407.1|WP_002989607.1|969048_969663_-|TVP38/TMEM64-family-protein
MTKRNSKAYILWQKIIKILGIIALIGTFFLAFWLYRLGILNDSNALKDLVQRYRLWGPFVFIVVQIIQIVFPVIPGGLTTVAGFLIFGPVTGFIYNYVGIIIGSIVLFLLVKTYGRKFILLFVNDKTFYKYERRLETPGYEKLFIFCMASPVSPADIMVMITGLTDMSLKRFVTILLITKPISIIGYSYLFIFGKDVISWFLQH
>NZ_LS483407.1|WP_002989605.1|970403_971024_+|DUF3862-domain-containing-protein
MTKKHLLTLLLISFFTSFLVACSTTKDKEPQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSLEELISLFGEPSQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGLSQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFENNQLTEMSQVGLEE
>NZ_LS483407.1|WP_014635534.1|971280_973545_-|glycogen/starch/alpha-glucan-family-phosphorylase
MTRFTEYVEIKLGKSLTQASNEEIYLSLLNFVKEEASHKAKNSAKRKVYYISAEFLIGKLLSNNLINLGIYKDIKEELTAAGKSIAEVEDVELEPSLGNGGLGRLASCFIDSIASLGINGEGVGLNYHCGLFKQVFKHNEQEAEPNFWIEDDSWLVPTDISYDVPFKNFTLKSRLDRIDVLGYKRDTKNYLNLFDIEGVDYGLIKDGISFDKTEIAKNLTLFLYPDDSDKNGELLRIYQQYFMVSNAAQLIIDEAIERGSNLHDLADYAYVQINDTHPSMVIPELIRLLTEKHGFDFDEAVAVVKNMVGYTNHTILAEALEKWPTAYLNEVVPHLVTIIEKLDALVRSEVSDPAVQIIDESGRVHMAHMDIHFATSVNGVAALHTEILKNSELKAFYDLYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLMAFADDKAVHAKLAEIKFNNKLALKRYLKDNKDIELDEHSIIDTQIKRFHEYKRQQMNALYVIHKYLEIKKGNLPKRKITVIFGGKAAPAYIIAQDIIHLILCLSELINNDPEVSPYLNVHLVENYNVTVAEHLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELAGMENIYTFGKDSDTIINLYATASYVAKDYYDNHPAIKAAVNFIISPELLAFGNEERLDRLYKELISKDWFMTLIDLEEYIEVKEKMLADYEDQDLWMTKVVHNIAKAGFFSSDRTIEQYNEDIWHSR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK448798	Streptococcus phage Javan533, complete genome	30200-30229	0	1.0
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	NC_028700	Streptococcus phage T12, complete genome	30053-30082	0	1.0
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK448790	Streptococcus phage Javan515, complete genome	29969-29998	0	1.0
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK448783	Streptococcus phage Javan503, complete genome	29115-29144	0	1.0
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK448967	Streptococcus phage Javan510, complete genome	30201-30230	0	1.0
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK448683	Streptococcus phage Javan149, complete genome	32623-32652	0	1.0
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	NC_004588	Streptococcus prophage 315.5, complete genome	30350-30379	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448798	Streptococcus phage Javan533, complete genome	8396-8425	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	NC_004585	Streptococcus prophage 315.2, complete genome	10894-10923	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448955	Streptococcus phage Javan478, complete genome	9990-10019	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448966	Streptococcus phage Javan508, complete genome	10749-10778	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	KT388093	Streptococcus phage A25, complete genome	5353-5382	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448772	Streptococcus phage Javan483, complete genome	10764-10793	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448783	Streptococcus phage Javan503, complete genome	8311-8340	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448967	Streptococcus phage Javan510, complete genome	8397-8426	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	KY349816	Streptococcus phage Str01, complete genome	30556-30585	0	1.0
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	NC_004588	Streptococcus prophage 315.5, complete genome	8546-8575	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448973	Streptococcus phage Javan522, complete genome	40607-40636	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448942	Streptococcus phage Javan448, complete genome	25439-25468	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448965	Streptococcus phage Javan506, complete genome	40859-40888	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448970	Streptococcus phage Javan516, complete genome	45466-45495	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448959	Streptococcus phage Javan488, complete genome	40461-40490	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448778	Streptococcus phage Javan493, complete genome	40250-40279	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448963	Streptococcus phage Javan498, complete genome	31137-31166	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448949	Streptococcus phage Javan460, complete genome	41257-41286	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448975	Streptococcus phage Javan526, complete genome	41041-41070	0	1.0
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	MK448782	Streptococcus phage Javan501, complete genome	43391-43420	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448960	Streptococcus phage Javan492, complete genome	36992-37021	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448973	Streptococcus phage Javan522, complete genome	38435-38464	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448762	Streptococcus phage Javan447, complete genome	37125-37154	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448969	Streptococcus phage Javan514, complete genome	30533-30562	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	NC_004585	Streptococcus prophage 315.2, complete genome	37750-37779	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448966	Streptococcus phage Javan508, complete genome	37605-37634	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448972	Streptococcus phage Javan520, complete genome	32468-32497	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448795	Streptococcus phage Javan527, complete genome	43205-43234	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448790	Streptococcus phage Javan515, complete genome	33547-33576	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	NC_004584	Streptococcus prophage 315.1, complete genome	36541-36570	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448774	Streptococcus phage Javan487, complete genome	30647-30676	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448772	Streptococcus phage Javan483, complete genome	37848-37877	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448778	Streptococcus phage Javan493, complete genome	38078-38107	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448773	Streptococcus phage Javan485, complete genome	33419-33448	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448978	Streptococcus phage Javan532, complete genome	36435-36464	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448785	Streptococcus phage Javan507, complete genome	36436-36465	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448957	Streptococcus phage Javan484, complete genome	42259-42288	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448975	Streptococcus phage Javan526, complete genome	38860-38889	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448782	Streptococcus phage Javan501, complete genome	41219-41248	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448675	Streptococcus phage Javan129, complete genome	17466-17495	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448960	Streptococcus phage Javan492, complete genome	14089-14118	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448762	Streptococcus phage Javan447, complete genome	14216-14245	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK449010	Streptococcus phage Javan90, complete genome	14111-14140	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448791	Streptococcus phage Javan517, complete genome	13321-13350	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448859	Streptococcus phage Javan170, complete genome	17216-17245	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	NC_004587	Streptococcus prophage 315.4, complete genome	13416-13445	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	14686-14715	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448977	Streptococcus phage Javan530, complete genome	13321-13350	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448850	Streptococcus phage Javan132, complete genome	16803-16832	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448854	Streptococcus phage Javan146, complete genome	17231-17260	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448676	Streptococcus phage Javan131, complete genome	19726-19755	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448788	Streptococcus phage Javan511, complete genome	13321-13350	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448954	Streptococcus phage Javan476, complete genome	13692-13721	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448833	Streptococcus phage Javan87, complete genome	14111-14140	0	1.0
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448688	Streptococcus phage Javan161, complete genome	17169-17198	0	1.0
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK449010	Streptococcus phage Javan90, complete genome	33062-33091	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448848	Streptococcus phage Javan126, complete genome	33731-33760	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448857	Streptococcus phage Javan164, complete genome	33731-33760	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448677	Streptococcus phage Javan133, complete genome	34731-34760	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	NC_009018	Streptococcus phage phi3396, complete genome	34980-35009	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448859	Streptococcus phage Javan170, complete genome	39220-39249	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448672	Streptococcus phage Javan117, complete genome	34181-34210	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448849	Streptococcus phage Javan128, complete genome	33601-33630	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448682	Streptococcus phage Javan143, complete genome	36822-36851	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448854	Streptococcus phage Javan146, complete genome	39562-39591	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448680	Streptococcus phage Javan139, complete genome	34255-34284	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448950	Streptococcus phage Javan464, complete genome	37462-37491	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448833	Streptococcus phage Javan87, complete genome	33062-33091	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448688	Streptococcus phage Javan161, complete genome	39178-39207	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448973	Streptococcus phage Javan522, complete genome	15272-15301	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448858	Streptococcus phage Javan166, complete genome	17704-17733	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448798	Streptococcus phage Javan533, complete genome	14936-14965	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	NC_028700	Streptococcus phage T12, complete genome	14785-14814	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448790	Streptococcus phage Javan515, complete genome	14609-14638	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448672	Streptococcus phage Javan117, complete genome	12427-12456	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448778	Streptococcus phage Javan493, complete genome	14814-14843	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448967	Streptococcus phage Javan510, complete genome	14937-14966	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448975	Streptococcus phage Javan526, complete genome	15632-15661	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448782	Streptococcus phage Javan501, complete genome	17918-17947	1	0.967
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	NC_004588	Streptococcus prophage 315.5, complete genome	15086-15115	1	0.967
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448976	Streptococcus phage Javan528, complete genome	35400-35429	2	0.933
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448681	Streptococcus phage Javan141, complete genome	33664-33693	2	0.933
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448955	Streptococcus phage Javan478, complete genome	39653-39682	2	0.933
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448963	Streptococcus phage Javan498, complete genome	28946-28975	2	0.933
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448683	Streptococcus phage Javan149, complete genome	36200-36229	2	0.933
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448793	Streptococcus phage Javan523, complete genome	14764-14793	2	0.933
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448950	Streptococcus phage Javan464, complete genome	15027-15056	2	0.933
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448683	Streptococcus phage Javan149, complete genome	17025-17054	2	0.933
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK449010	Streptococcus phage Javan90, complete genome	29473-29502	3	0.9
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK448833	Streptococcus phage Javan87, complete genome	29473-29502	3	0.9
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	JX409895	Streptococcus phage JX01, complete genome	6766-6795	3	0.9
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448900	Streptococcus phage Javan290, complete genome	34159-34188	3	0.9
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448727	Streptococcus phage Javan291, complete genome	39011-39040	3	0.9
NZ_LS483407_2	2.4\|781474\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781474-781503	30	MK448793	Streptococcus phage Javan523, complete genome	38469-38498	3	0.9
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	NC_028666	Streptococcus phage Str-PAP-1, complete genome	29889-29918	3	0.9
NZ_LS483407_2	2.1\|781276\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781276-781305	30	MK448856	Streptococcus phage Javan158, complete genome	8644-8673	4	0.867
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448858	Streptococcus phage Javan166, complete genome	10365-10394	4	0.867
NZ_LS483407_2	2.5\|781540\|30\|NZ_LS483407\|CRISPRCasFinder,CRT	781540-781569	30	MK448956	Streptococcus phage Javan48, complete genome	16593-16622	4	0.867
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448975	Streptococcus phage Javan526, complete genome	9925-9954	5	0.833
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MK448782	Streptococcus phage Javan501, complete genome	10264-10293	5	0.833
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	212850-212879	7	0.767
NZ_LS483407_2	2.2\|781342\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781342-781371	30	MN830258	Lactobacillus phage JNU_P9, complete genome	14976-15005	8	0.733
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	KC292027	Halovirus HCTV-5, complete genome	26277-26306	8	0.733
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	KC117377	Halovirus HVTV-1, complete genome	22698-22727	8	0.733
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	CP041516	Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence	44015-44044	9	0.7
NZ_LS483407_2	2.3\|781408\|30\|NZ_LS483407\|PILER-CR,CRISPRCasFinder,CRT	781408-781437	30	NZ_CP041068	Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence	10076-10105	9	0.7

1. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 0, identity: 1.0

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcaagtacagtctgcaatag	Protospacer
******************************

2. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 0, identity: 1.0

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcaagtacagtctgcaatag	Protospacer
******************************

3. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcaagtacagtctgcaatag	Protospacer
******************************

4. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 0, identity: 1.0

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcaagtacagtctgcaatag	Protospacer
******************************

5. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 0, identity: 1.0

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcaagtacagtctgcaatag	Protospacer
******************************

6. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 0, identity: 1.0

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcaagtacagtctgcaatag	Protospacer
******************************

7. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 0, identity: 1.0

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcaagtacagtctgcaatag	Protospacer
******************************

8. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

9. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

10. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

11. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

12. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to KT388093 (Streptococcus phage A25, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

13. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

14. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

15. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

16. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to KY349816 (Streptococcus phage Str01, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

17. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 0, identity: 1.0

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctattaaatccaagc	Protospacer
******************************

18. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

19. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

20. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

21. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

22. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

23. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

24. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

25. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

26. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

27. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 0, identity: 1.0

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
ttatagaaagagaaagtaacagtaaaacag	Protospacer
******************************

28. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

29. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

30. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

31. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448969 (Streptococcus phage Javan514, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

32. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

33. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

34. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

35. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

36. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

37. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

38. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

39. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

40. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

41. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448773 (Streptococcus phage Javan485, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

42. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

43. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

44. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

45. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

46. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 0, identity: 1.0

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcatttccccaa	Protospacer
******************************

47. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

48. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

49. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

50. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

51. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

52. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

53. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

54. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

55. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

56. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

57. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

58. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

59. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

60. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

61. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

62. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgttcgataaatagaagtgtcccagaatg	Protospacer
******************************

63. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

64. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

65. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

66. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

67. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

68. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

69. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctgtctagtaagtcaatcgcatttccccaa	Protospacer
**.***************************

70. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctgtctagtaagtcaatcgcatttccccaa	Protospacer
**.***************************

71. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

72. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

73. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448680 (Streptococcus phage Javan139, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

74. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatcgcattttcccaa	Protospacer
************************.*****

75. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

76. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 1, identity: 0.967

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcatttccccaa	Protospacer
***************** ************

77. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

78. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

79. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

80. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

81. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

82. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

83. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

84. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

85. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

86. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

87. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 1, identity: 0.967

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccagaatg	Protospacer
*****.************************

88. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448976 (Streptococcus phage Javan528, complete genome) position: , mismatch: 2, identity: 0.933

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcattgccccaa	Protospacer
***************** ***** ******

89. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 2, identity: 0.933

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctgtctagtaagtcaatcgcgtttccccaa	Protospacer
**.*****************.*********

90. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 2, identity: 0.933

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcattgccccaa	Protospacer
***************** ***** ******

91. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 2, identity: 0.933

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtcaatagcattgccccaa	Protospacer
***************** ***** ******

92. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 2, identity: 0.933

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaggtcaatagcatttccccaa	Protospacer
**********.****** ************

93. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 2, identity: 0.933

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccaaaatg	Protospacer
*****.*******************.****

94. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 2, identity: 0.933

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccaaaatg	Protospacer
*****.*******************.****

95. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 2, identity: 0.933

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctgtttgataaatagaagtgtcccaaaatg	Protospacer
*****.*******************.****

96. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 3, identity: 0.9

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcagatacagtctgcaattg	Protospacer
*************..************* *

97. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 3, identity: 0.9

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaagcagatacagtctgcaattg	Protospacer
*************..************* *

98. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 3, identity: 0.9

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ctaaaacatggtctgctatcaaatccaaat	Protospacer
*******************.********..

99. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448900 (Streptococcus phage Javan290, complete genome) position: , mismatch: 3, identity: 0.9

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaggtcaatcgcattgccccac	Protospacer
**********.************ *****

100. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448727 (Streptococcus phage Javan291, complete genome) position: , mismatch: 3, identity: 0.9

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaggtcaatcgcattgccccac	Protospacer
**********.************ *****

101. spacer 2.4|781474|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 3, identity: 0.9

ctatctagtaagtcaatcgcatttccccaa	CRISPR spacer
ctatctagtaagtctatggcatttccccag	Protospacer
************** ** ***********.

102. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to NC_028666 (Streptococcus phage Str-PAP-1, complete genome) position: , mismatch: 3, identity: 0.9

ctgttcgataaatagaagtgtcccagaatg	CRISPR spacer
ctataagataaatagaagtgtcccagaatg	Protospacer
**.*  ************************

103. spacer 2.1|781276|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448856 (Streptococcus phage Javan158, complete genome) position: , mismatch: 4, identity: 0.867

gcttacaaaagcaagtacagtctgcaatag	CRISPR spacer
gcttacaaaaacaaatacagtctgcactgg	Protospacer
**********.***.*********** *.*

104. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 4, identity: 0.867

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ccaaaacatggtctgctatcaaatccaaat	Protospacer
*.*****************.********..

105. spacer 2.5|781540|30|NZ_LS483407|CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 4, identity: 0.867

ctgtt-cgataaatagaagtgtcccagaatg	CRISPR spacer
-tgttatgataaacagaagcgtcccagaatg	Protospacer
 **** .******.*****.***********

106. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 5, identity: 0.833

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ccacaacatggtctgctatcaaatccaaat	Protospacer
*.* ***************.********..

107. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 5, identity: 0.833

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
ccacaacatggtctgctatcaaatccaaat	Protospacer
*.* ***************.********..

108. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 7, identity: 0.767

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
cttcacaaagagaaggtaacactaaaacat	Protospacer
.* .* ********.****** *******

109. spacer 2.2|781342|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 8, identity: 0.733

ctaaaacatggtctgctattaaatccaagc	CRISPR spacer
gtaaagcatggtctgatattaaatcggctt	Protospacer
 ****.********* ********* .  .

110. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to KC292027 (Halovirus HCTV-5, complete genome) position: , mismatch: 8, identity: 0.733

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
agaatgaaagagaaagtcacagtcaaactc	Protospacer
  *  ************ ***** ****

111. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to KC117377 (Halovirus HVTV-1, complete genome) position: , mismatch: 8, identity: 0.733

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
agaatgaaagagaaagtcacagtcaaactc	Protospacer
  *  ************ ***** ****

112. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
atgaagaaaaagaaagtaacagtaagtatc	Protospacer
 *. *****.***************.

113. spacer 2.3|781408|30|NZ_LS483407|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 9, identity: 0.7

ttatagaaagagaaagtaacagtaaaacag	CRISPR spacer
atgaagaaaaagaaagtaacagtaagtatc	Protospacer
 *. *****.***************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36637 : 48950

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111674410.1\|36637_40363_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.7e-39	27.2
WP_014635215.1\|40523_41978_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-53	32.5
WP_111674412.1\|42005_43028_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	3.1e-63	41.8
WP_111674414.1\|43195_43750_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-25	35.6
WP_111674416.1\|43933_45481_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	4.4e-45	52.4
WP_111674418.1\|45538_46663_-	SH3 domain-containing protein	F8HGP2	Streptococcus_phage	5.9e-07	28.6
WP_030127618.1\|46915_48181_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_002987716.1\|48458_48950_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.2e-18	42.3

DBSCAN-SWA_2

334679 : 433773

101

Streptococcus_phage(20.69%)

bacteriocin,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010921930.1\|334679_335315_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.2e-65	63.4
WP_111674484.1\|335332_336208_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.5e-63	43.8
WP_002985838.1\|336870_337194_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.3e-28	59.4
WP_014635308.1\|337198_338062_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.7e-115	75.0
WP_002985833.1\|338088_338481_+	hypothetical protein	NA	NA	NA	NA
WP_011054223.1\|338527_339157_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_011284536.1\|339454_339811_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	6.3e-40	65.8
WP_111674485.1\|339884_340712_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	3.8e-128	79.5
WP_168429873.1\|340945_342127_+	L-lactate oxidase	NA	NA	NA	NA
WP_111674487.1\|342393_347334_+\|protease	CXC chemokine-degrading serine protease SpyCEP	NA	NA	NA	NA
WP_010921939.1\|348105_348813_+	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_111674488.1\|349052_351053_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.0e-86	35.3
WP_111674489.1\|351547_352561_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.4e-97	54.0
WP_002990870.1\|352564_353053_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	1.3e-11	37.5
WP_111674490.1\|353019_355200_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.6e-170	43.2
WP_111674491.1\|355406_356159_-	ADP-ribosyltransferase	NA	NA	NA	NA
WP_111674492.1\|356616_357264_+	hypothetical protein	NA	NA	NA	NA
WP_111674493.1\|357359_357848_+	hypothetical protein	NA	NA	NA	NA
WP_021340750.1\|358035_358287_+	hypothetical protein	NA	NA	NA	NA
WP_111674495.1\|358381_359014_-	hypothetical protein	NA	NA	NA	NA
WP_002993880.1\|359691_360012_+	hypothetical protein	NA	NA	NA	NA
WP_010921949.1\|360324_361023_-	streptococcal pyrogenic exotoxin SpeJ	NA	NA	NA	NA
WP_111674496.1\|361270_361936_-	hypothetical protein	NA	NA	NA	NA
WP_002990844.1\|362294_362531_+	DUF2829 domain-containing protein	NA	NA	NA	NA
WP_021733429.1\|362523_363222_+	3-oxoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.1e-11	26.0
WP_111674497.1\|363297_364257_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_002993065.1\|364589_365927_+	MFS transporter	NA	NA	NA	NA
WP_111674498.1\|366099_367482_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L4K9	Tupanvirus	8.5e-32	36.0
WP_002990829.1\|367512_368067_+	NUDIX hydrolase	NA	NA	NA	NA
WP_002990826.1\|368066_368318_+	hypothetical protein	NA	NA	NA	NA
WP_030126996.1\|368337_369033_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_076639592.1\|369183_369525_+	hypothetical protein	NA	NA	NA	NA
WP_023610043.1\|369623_370271_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
WP_004218965.1\|370416_371349_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002985780.1\|371412_372138_+	metal ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.4e-17	32.6
WP_011017448.1\|372138_372993_+	metal ABC transporter permease	NA	NA	NA	NA
WP_002985776.1\|373140_373947_-	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.5e-20	36.6
WP_063812197.1\|374163_376569_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	3.8e-88	51.7
WP_010921962.1\|376638_376992_-	DUF3397 domain-containing protein	NA	NA	NA	NA
WP_002990800.1\|377235_377661_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_002985768.1\|377766_378456_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_002985765.1\|378778_379507_+	UMP kinase	NA	NA	NA	NA
WP_002985763.1\|379535_380093_+	ribosome recycling factor	NA	NA	NA	NA
WP_011106872.1\|380201_381059_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_002990794.1\|381131_381641_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_002985757.1\|381637_381853_+	YozE family protein	NA	NA	NA	NA
WP_111674499.1\|382008_383178_+	LysM peptidoglycan-binding domain-containing protein	A0A0E3XB61	Gordonia_phage	5.5e-16	40.5
WP_111674500.1\|383491_385264_+	oleate hydratase	NA	NA	NA	NA
WP_010921967.1\|385422_386475_+	PhoH family protein	W8D063	Erwinia_phage	1.2e-46	50.0
WP_111674501.1\|386520_387096_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_021340735.1\|387254_387752_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_002985746.1\|387732_388140_+	diacylglycerol kinase	NA	NA	NA	NA
WP_111674502.1\|388259_389156_+	GTPase Era	NA	NA	NA	NA
WP_111674503.1\|389176_389653_+	NUDIX hydrolase	NA	NA	NA	NA
WP_014635333.1\|390814_391261_-	ATP-binding cassette domain-containing protein	F2Y302	Organic_Lake_phycodnavirus	4.1e-12	36.0
WP_011528336.1\|391483_392194_-\|bacteriocin	bacteriocin ABC transporter	NA	NA	NA	NA
WP_002994577.1\|392298_392535_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_002994580.1\|392832_393057_+\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_002994581.1\|393034_393211_+	hypothetical protein	NA	NA	NA	NA
WP_109828766.1\|393454_393817_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_028797129.1\|394427_394655_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994587.1\|394703_395021_+	hypothetical protein	NA	NA	NA	NA
WP_111674504.1\|395086_395368_+\|transposase	transposase	NA	NA	NA	NA
WP_111674505.1\|395316_395970_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.5e-26	39.0
WP_080367206.1\|396009_396225_+\|transposase	transposase	A4JX31	Burkholderia_virus	6.5e-08	38.0
WP_002992578.1\|398083_398833_+	response regulator transcription factor	A0A1V0E029	Clostridioides_phage	2.1e-21	28.0
WP_111674506.1\|398833_400168_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_011017462.1\|400315_400441_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_111674507.1\|400517_401882_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_111674508.1\|401892_404046_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	1.3e-42	28.1
WP_111674509.1\|405372_405609_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002987564.1\|405633_405816_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_002992018.1\|407010_407238_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002985729.1\|407250_407451_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_011054252.1\|407989_408271_+	hypothetical protein	NA	NA	NA	NA
WP_023605036.1\|408464_408866_+	hypothetical protein	NA	NA	NA	NA
WP_111674510.1\|409116_410187_+	hypothetical protein	NA	NA	NA	NA
WP_030126785.1\|410279_410678_+	hypothetical protein	NA	NA	NA	NA
WP_020833327.1\|411026_411296_-	quorum-sensing system protein StcA	NA	NA	NA	NA
WP_128650799.1\|412209_412278_-	peptide pheromone SHP2	NA	NA	NA	NA
WP_002990747.1\|412366_413233_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_111674511.1\|413404_414232_+	DNA-formamidopyrimidine glycosylase	A0A127AWE5	Bacillus_phage	5.1e-16	27.5
WP_011017469.1\|414228_414822_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_011284584.1\|415011_416514_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	6.7e-75	41.2
WP_002994146.1\|416635_417829_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_002990729.1\|417825_417972_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_002985700.1\|418017_418254_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_111674512.1\|418347_420681_+	ribonuclease R	Q0GXV6	Lactococcus_phage	8.8e-90	39.8
WP_111674513.1\|420683_421151_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.2e-40	56.3
WP_111674514.1\|421156_421876_+	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA
WP_031488437.1\|421992_422640_-	pyroglutamyl-peptidase I	NA	NA	NA	NA
WP_111674515.1\|422689_423616_-	DUF979 family protein	NA	NA	NA	NA
WP_012560521.1\|423615_424299_-	DUF969 domain-containing protein	NA	NA	NA	NA
WP_023079867.1\|424509_425436_-	glycosyltransferase family 2 protein	V5USA4	Oenococcus_phage	2.2e-76	47.2
WP_002985686.1\|425580_425958_-	VOC family protein	NA	NA	NA	NA
WP_002985684.1\|425968_426634_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002985682.1\|426682_427768_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_002985680.1\|427941_428943_+	catabolite control protein A	C6ZCU4	Enterobacteria_phage	6.1e-24	28.5
WP_002985678.1\|429073_430072_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_111674516.1\|430073_431408_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_047235200.1\|431829_433773_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.0e-120	38.7

DBSCAN-SWA_3

626027 : 636631

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_030126735.1\|626027_628238_-	LTA synthase family protein	W6LM83	Streptococcus_phage	6.5e-268	68.9
WP_002985142.1\|628345_629509_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.4e-143	65.1
WP_002985140.1\|629505_630192_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	7.0e-88	68.9
WP_002985136.1\|630285_631452_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-34	32.8
WP_011054350.1\|631512_631854_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	1.3e-18	39.3
WP_002985132.1\|632074_633427_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	4.5e-30	24.0
WP_002992648.1\|633506_634784_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_011017641.1\|634813_635254_-	membrane protein	NA	NA	NA	NA
WP_011017642.1\|635488_636631_+	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	8.3e-25	27.3

DBSCAN-SWA_4

1002932 : 1134222

131

Streptococcus_phage(35.29%)

integrase,tRNA,tail,holin,portal,protease,terminase,transposase,capsid

attL 1002877:1002893|attR 1131595:1131614

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1002877:1002893	attL	NA	NA	NA	NA
WP_172453377.1\|1002932_1004274_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-63	49.1
1002877:1002893	attL	NA	NA	NA	NA
WP_002992869.1\|1004574_1005447_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_002984130.1\|1005670_1006981_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_011284472.1\|1007058_1007352_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_023078513.1\|1007495_1007738_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_168429869.1\|1007783_1008107_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-18	44.1
WP_014407646.1\|1008123_1008855_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_002984124.1\|1008969_1009335_+	thioesterase family protein	NA	NA	NA	NA
WP_011284908.1\|1009454_1010675_-	MFS transporter	NA	NA	NA	NA
WP_011888813.1\|1011048_1012533_+	DUF1846 domain-containing protein	NA	NA	NA	NA
WP_002984115.1\|1012637_1013039_-	PaaI family thioesterase	NA	NA	NA	NA
WP_111674613.1\|1014070_1015462_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	F5CA72	Streptococcus_phi-m46.1-like_phage	1.3e-261	99.1
WP_002984109.1\|1015510_1016962_-	LCP family protein	NA	NA	NA	NA
WP_002989310.1\|1017169_1017661_-	shikimate kinase	NA	NA	NA	NA
WP_002984103.1\|1017653_1018937_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002984102.1\|1019047_1020013_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_002984100.1\|1020014_1020875_-	methionyl aminopeptidase	NA	NA	NA	NA
WP_002989302.1\|1020890_1022174_-	CBS domain-containing protein	NA	NA	NA	NA
WP_014635551.1\|1022182_1022725_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_111674614.1\|1022962_1023952_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_002989295.1\|1024308_1025568_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_111674615.1\|1025741_1026938_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.9e-137	64.9
WP_111674616.1\|1027474_1029841_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_002984078.1\|1030044_1030986_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA
WP_030127036.1\|1030960_1031164_-	DUF3272 domain-containing protein	NA	NA	NA	NA
WP_111674617.1\|1031259_1032930_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	8.6e-47	42.2
WP_009881127.1\|1032929_1033427_-	GAF domain-containing protein	NA	NA	NA	NA
WP_002992609.1\|1033571_1034381_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_002984063.1\|1034433_1034697_-	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_002984060.1\|1034776_1035403_-	uridine kinase	A0A1V0SAA3	Catovirus	2.2e-35	39.7
WP_002989254.1\|1035500_1036586_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.6e-33	32.3
WP_014407660.1\|1036695_1037970_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_111674618.1\|1038065_1039493_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002984033.1\|1039677_1041411_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_002984031.1\|1041415_1041679_-	phosphocarrier protein HPr	NA	NA	NA	NA
WP_002989242.1\|1042071_1042290_+	redoxin NrdH	A0A249XUR7	Enterococcus_phage	1.1e-13	49.3
WP_111674619.1\|1042309_1044469_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	4.7e-263	63.6
WP_011017933.1\|1044801_1045761_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.8e-126	70.2
WP_111674620.1\|1045735_1047049_+	chloride channel protein	NA	NA	NA	NA
WP_002995750.1\|1048434_1049130_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
1047088:1047104	attR	NA	NA	NA	NA
WP_023080157.1\|1049148_1049910_-	DUF3169 family protein	NA	NA	NA	NA
1047088:1047104	attR	NA	NA	NA	NA
WP_002989220.1\|1049906_1050122_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111674621.1\|1050482_1053101_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-61	33.9
WP_111674622.1\|1053487_1054543_-	peptidylprolyl isomerase PrsA	NA	NA	NA	NA
WP_002984000.1\|1054605_1055313_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	2.0e-08	27.2
WP_111674623.1\|1055378_1056575_-	OFA family MFS transporter	NA	NA	NA	NA
WP_023079941.1\|1056950_1058756_-	oligoendopeptidase F	NA	NA	NA	NA
WP_111674624.1\|1058768_1059731_-	competence protein CoiA	NA	NA	NA	NA
WP_111674625.1\|1060027_1060744_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_111674626.1\|1060862_1061567_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_002983989.1\|1061768_1062797_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002983986.1\|1062803_1064024_+	DUF3114 domain-containing protein	NA	NA	NA	NA
WP_002983984.1\|1064137_1064728_-	serine hydrolase	NA	NA	NA	NA
WP_011054656.1\|1064724_1064973_-	hypothetical protein	NA	NA	NA	NA
WP_011054657.1\|1064957_1065185_-	hypothetical protein	NA	NA	NA	NA
WP_002983977.1\|1065351_1065957_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.8e-58	53.2
WP_011054659.1\|1066053_1067094_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_111674627.1\|1067164_1069408_-	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.8e-55	59.2
WP_111674628.1\|1069388_1070051_-	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_012560804.1\|1070250_1070991_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011054662.1\|1071030_1071885_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_002989164.1\|1071874_1072153_+	GIY-YIG nuclease family protein	W8W2G4	Invertebrate_iridovirus	1.8e-05	36.0
WP_002994363.1\|1072176_1074177_-	potassium transporter Kup	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	1.3e-65	34.0
WP_011054664.1\|1074304_1075924_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.9e-59	36.5
WP_002989155.1\|1076230_1077775_-	peptide chain release factor 3	A0A1B0RXH7	Streptococcus_phage	1.1e-35	29.1
WP_031488543.1\|1078022_1078718_-	TIGR02206 family membrane protein	NA	NA	NA	NA
WP_023079944.1\|1078821_1080189_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_002994369.1\|1080387_1081434_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_002983939.1\|1081534_1082131_-	recombination protein RecR	NA	NA	NA	NA
WP_109828818.1\|1082919_1083699_-	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_011017959.1\|1083822_1084365_-	hypothetical protein	NA	NA	NA	NA
WP_002983930.1\|1084525_1085047_-	transcription repressor NadR	NA	NA	NA	NA
WP_109820919.1\|1085153_1085849_-	phosphoglycerate mutase	NA	NA	NA	NA
WP_021299339.1\|1086087_1087023_+	dihydroorotate oxidase	A0A1V0SH91	Hokovirus	4.6e-66	45.1
WP_011284945.1\|1087322_1089185_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.4e-90	33.8
WP_111674629.1\|1089716_1089899_-	Paratox	A3F673	Streptococcus_phage	4.5e-18	73.3
WP_002988472.1\|1090011_1090794_-	exotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	4.3e-49	45.8
WP_002988467.1\|1091041_1092166_-	Fic family protein	D7RWK9	Brochothrix_phage	3.1e-93	49.1
WP_111674630.1\|1092301_1093519_-	glucosaminidase domain-containing protein	A0A1P8VVM5	Streptococcus_phage	1.2e-162	59.7
WP_111674631.1\|1093637_1093865_-\|holin	phage holin	A7J2B3	Streptococcus_phage	5.8e-31	98.7
WP_011017397.1\|1093861_1094134_-	hypothetical protein	A7J2B2	Streptococcus_phage	5.5e-36	91.0
WP_023079933.1\|1094151_1094763_-	DUF1366 domain-containing protein	Q938J7	Temperate_phage	3.4e-78	88.7
WP_111674632.1\|1094765_1095194_-	DUF1617 family protein	Q938J8	Temperate_phage	1.8e-65	93.6
WP_111674633.1\|1095205_1097089_-	gp58-like family protein	Q938J9	Temperate_phage	8.0e-251	96.5
WP_111674634.1\|1097103_1098117_-	hyaluronoglucosaminidase	Q938K0	Temperate_phage	4.7e-181	98.2
WP_111674635.1\|1098113_1100258_-\|tail	phage tail protein	Q938K1	Temperate_phage	0.0e+00	97.1
WP_111674636.1\|1100254_1100971_-\|tail	phage tail family protein	Q938K2	Temperate_phage	3.6e-135	98.7
WP_111674637.1\|1100967_1104228_-	tape measure protein	Q938K3	Temperate_phage	0.0e+00	98.5
WP_010922087.1\|1104217_1104799_-	hypothetical protein	Q938K4	Temperate_phage	1.6e-104	98.4
WP_111674638.1\|1104802_1105237_-	hypothetical protein	Q938K5	Temperate_phage	3.8e-71	98.6
WP_011054741.1\|1105275_1105761_-	hypothetical protein	Q938K6	Temperate_phage	1.6e-86	100.0
WP_010922084.1\|1105760_1106159_-\|capsid	phage capsid protein	Q79S87	Temperate_phage	3.5e-71	100.0
WP_010922083.1\|1106155_1106512_-	hypothetical protein	Q79S88	Temperate_phage	4.5e-62	100.0
WP_010922082.1\|1106511_1106844_-	hypothetical protein	Q79S86	Temperate_phage	9.6e-59	100.0
WP_111674639.1\|1106833_1107250_-	hypothetical protein	Q938K7	Temperate_phage	1.3e-55	98.2
WP_111674640.1\|1107303_1108122_-\|capsid	N4-gp56 family major capsid protein	Q79S85	Temperate_phage	6.8e-146	99.6
WP_010922079.1\|1108125_1108740_-	hypothetical protein	Q938K8	Temperate_phage	3.1e-95	95.0
WP_010922078.1\|1108865_1109132_-	hypothetical protein	Q938K9	Temperate_phage	8.3e-37	95.5
WP_010922077.1\|1109218_1109446_-	hypothetical protein	NA	NA	NA	NA
WP_111674641.1\|1109445_1110939_-\|capsid	phage minor capsid protein	Q938L1	Temperate_phage	3.1e-213	79.8
WP_111674642.1\|1110943_1112446_-\|portal	phage portal protein	Q938L2	Temperate_phage	9.8e-276	97.2
WP_111674643.1\|1112459_1113671_-\|terminase	PBSX family phage terminase large subunit	Q938L3	Temperate_phage	1.5e-221	97.6
WP_111674775.1\|1113753_1114449_-\|terminase	terminase	A0A2H4J4R0	uncultured_Caudovirales_phage	1.7e-28	34.2
WP_111674644.1\|1114568_1114985_-	transcriptional regulator	A7J289	Streptococcus_phage	7.3e-72	98.6
WP_023611036.1\|1114981_1115173_-	hypothetical protein	NA	NA	NA	NA
WP_023079587.1\|1115421_1115592_-	hypothetical protein	A7J285	Streptococcus_phage	2.8e-22	98.1
WP_047149508.1\|1115592_1116915_-	DEAD/DEAH box helicase family protein	A7J284	Streptococcus_phage	1.1e-249	96.8
WP_011054885.1\|1116911_1117187_-	VRR-NUC domain-containing protein	A7J283	Streptococcus_phage	2.9e-45	96.7
WP_111674645.1\|1119962_1121885_-	DNA polymerase	A7J280	Streptococcus_phage	0.0e+00	98.4
WP_111674646.1\|1121927_1122491_-	DUF2815 family protein	D2J040	Enterococcus_phage	8.7e-52	59.0
WP_111674647.1\|1122499_1123657_-	DUF2800 domain-containing protein	A7J278	Streptococcus_phage	8.8e-216	97.7
WP_002988708.1\|1123656_1123956_-	hypothetical protein	A7J277	Streptococcus_phage	1.8e-43	100.0
WP_023611025.1\|1124044_1124248_-	hypothetical protein	A7J276	Streptococcus_phage	1.6e-32	98.5
WP_023611032.1\|1125119_1125323_-	hypothetical protein	NA	NA	NA	NA
WP_023611037.1\|1125315_1125486_-	hypothetical protein	A7J273	Streptococcus_phage	2.9e-19	87.5
WP_111674648.1\|1125487_1125799_-	excisionase	A0A1S5SA25	Streptococcus_phage	5.3e-43	77.7
WP_023611028.1\|1125905_1126121_+	hypothetical protein	A0A1S5SA41	Streptococcus_phage	1.9e-15	61.4
WP_023611035.1\|1126094_1126343_-	hypothetical protein	A0A141E1M0	Streptococcus_phage	1.6e-26	69.5
WP_011017885.1\|1126422_1126632_+	hypothetical protein	NA	NA	NA	NA
WP_023611024.1\|1126773_1127034_+	hypothetical protein	M1PS67	Streptococcus_phage	5.8e-27	70.9
WP_023611022.1\|1127132_1127870_-	phage antirepressor KilAC domain-containing protein	A0A2H4IZX7	uncultured_Caudovirales_phage	3.6e-90	68.3
WP_002993390.1\|1127881_1128073_-	hypothetical protein	A7J270	Streptococcus_phage	4.0e-25	92.1
WP_020837421.1\|1128708_1128804_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_002994741.1\|1129226_1129574_+	helix-turn-helix transcriptional regulator	A0A1S5SEQ8	Streptococcus_phage	1.2e-40	72.6
WP_002994744.1\|1129577_1129958_+	ImmA/IrrE family metallo-endopeptidase	A0A1S5SFH2	Streptococcus_phage	8.0e-41	61.1
WP_076634078.1\|1129969_1130236_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_003051793.1\|1130364_1131507_+\|integrase	site-specific integrase	M1NRJ9	Streptococcus_phage	2.4e-173	77.4
WP_002983920.1\|1131596_1131872_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	2.6e-25	73.0
WP_002989129.1\|1131970_1132558_-	YpmS family protein	NA	NA	NA	NA
WP_161230208.1\|1132535_1133378_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_030126969.1\|1133370_1134222_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	9.2e-13	35.7

DBSCAN-SWA_5

1423712 : 1465258

Streptococcus_phage(32.08%)

head,tail,portal,terminase,integrase,capsid

attL 1420233:1420250|attR 1465338:1465355

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1420233:1420250	attL	NA	NA	NA	NA
WP_002994484.1\|1423712_1424405_-	AP2 domain-containing protein	A0A2H4J2S8	uncultured_Caudovirales_phage	1.5e-32	34.2
WP_023078271.1\|1424637_1425195_-	glycoside hydrolase family 73 protein	Q938J4	Temperate_phage	2.8e-95	89.2
WP_011054731.1\|1425305_1425491_-	hypothetical protein	Q938J5	Temperate_phage	1.7e-25	100.0
WP_023078532.1\|1425487_1425784_-	hypothetical protein	Q938J6	Temperate_phage	2.9e-46	99.0
WP_023078287.1\|1425794_1426406_-	DUF1366 domain-containing protein	Q938J7	Temperate_phage	1.9e-84	92.1
WP_023078279.1\|1426408_1426837_-	DUF1617 family protein	Q938J8	Temperate_phage	6.0e-61	87.9
WP_023078280.1\|1426848_1428867_-	gp58-like family protein	Q938J9	Temperate_phage	5.1e-179	72.6
WP_023078285.1\|1428876_1429986_-	hyaluronidase HylP	A7J2A8	Streptococcus_phage	8.4e-123	73.2
WP_111674696.1\|1429985_1432040_-\|tail	phage tail protein	A3F656	Streptococcus_phage	0.0e+00	83.8
WP_011184914.1\|1432036_1432816_-\|tail	phage tail family protein	A3F655	Streptococcus_phage	1.7e-66	54.8
WP_023078274.1\|1432848_1436484_-	tape measure protein	U6E979	Streptococcus_phage	5.2e-04	29.6
WP_002988428.1\|1436498_1436828_-	hypothetical protein	A0A1P8BLR3	Lactococcus_phage	5.7e-11	40.6
WP_023078288.1\|1436869_1437229_-	phage protein	D7RWD6	Brochothrix_phage	1.5e-20	45.5
WP_023078281.1\|1437281_1437956_-\|tail	phage major tail protein, TP901-1 family	D7RWD5	Brochothrix_phage	1.0e-43	53.6
WP_010922220.1\|1437965_1438355_-	hypothetical protein	Q38611	Lactococcus_phage	1.0e-43	68.2
WP_002984399.1\|1438351_1438717_-	HK97 gp10 family phage protein	A0A097BY98	Enterococcus_phage	7.7e-17	46.3
WP_002990028.1\|1438697_1439006_-	hypothetical protein	A0A2P1JTW8	Anoxybacillus_phage	5.7e-13	40.2
WP_002984392.1\|1439002_1439356_-\|head,tail	phage head-tail connector protein	A0A2H4J002	uncultured_Caudovirales_phage	9.7e-25	49.6
WP_011284854.1\|1439369_1439612_-	hypothetical protein	NA	NA	NA	NA
WP_023078263.1\|1439621_1440704_-\|capsid	major capsid protein	A0A2H4J022	uncultured_Caudovirales_phage	2.2e-104	56.9
WP_023078284.1\|1440706_1441087_-	hypothetical protein	NA	NA	NA	NA
WP_023078278.1\|1441096_1441630_-	DUF4355 domain-containing protein	A0A141E0S7	Streptococcus_phage	1.2e-15	84.2
WP_023078266.1\|1441773_1442040_-	hypothetical protein	A0A097PAR8	Streptococcus_pyogenes_phage	6.6e-26	71.6
WP_011284859.1\|1442042_1442357_-	hypothetical protein	M1PLI3	Streptococcus_phage	6.8e-38	72.8
WP_002988389.1\|1442426_1442612_-	hypothetical protein	NA	NA	NA	NA
WP_012560958.1\|1442615_1444178_-\|head	phage head morphogenesis protein	U6E9F1	Streptococcus_phage	2.5e-48	44.2
WP_111674697.1\|1444158_1445661_-\|portal	phage portal protein	C9W9H5	Streptococcus_virus	1.6e-140	54.5
WP_012560959.1\|1445672_1446962_-\|terminase	PBSX family phage terminase large subunit	A0A2H4IYR5	uncultured_Caudovirales_phage	1.7e-183	74.9
WP_023078286.1\|1446939_1447422_-\|terminase	terminase small subunit	E0Y3R8	Staphylococcus_virus	3.3e-15	40.3
WP_011017866.1\|1448253_1448694_-	ArpU family transcriptional regulator	Q938L8	Temperate_phage	5.0e-79	100.0
WP_012560960.1\|1449133_1449655_-	DUF1642 domain-containing protein	Q938L9	Temperate_phage	5.6e-69	76.3
WP_012560961.1\|1449651_1449945_-	hypothetical protein	A0A097PAR1	Streptococcus_pyogenes_phage	8.0e-49	97.9
WP_011054812.1\|1449941_1450127_-	hypothetical protein	A0A097PBF0	Streptococcus_pyogenes_phage	7.0e-27	100.0
WP_012560962.1\|1450224_1450710_-	class I SAM-dependent methyltransferase	A0A097PAU8	Streptococcus_pyogenes_phage	3.6e-94	99.4
WP_038432520.1\|1450713_1450998_-	hypothetical protein	A0A097PAV1	Streptococcus_pyogenes_phage	5.0e-40	91.5
WP_012560963.1\|1450994_1451399_-	hypothetical protein	Q938M1	Temperate_phage	3.4e-66	94.0
WP_023078268.1\|1451382_1451670_-	DUF1599 domain-containing protein	J7KDH9	Streptococcus_phage	5.1e-32	75.0
WP_012560965.1\|1451911_1452268_-	hypothetical protein	A0A097PAU4	Streptococcus_pyogenes_phage	5.5e-60	98.3
WP_011285574.1\|1452264_1452705_-	RusA family crossover junction endodeoxyribonuclease	A0A097PAS0	Streptococcus_pyogenes_phage	4.5e-80	97.9
WP_011106686.1\|1452704_1452908_-	hypothetical protein	Q938M6	Temperate_phage	4.7e-32	100.0
WP_023078249.1\|1452913_1453339_-	single-stranded DNA-binding protein	A0A097PAQ3	Streptococcus_pyogenes_phage	2.8e-55	83.0
WP_023078248.1\|1453331_1454006_-	ERF family protein	A0A097PBE8	Streptococcus_pyogenes_phage	5.2e-120	100.0
WP_111674698.1\|1454006_1454489_-	siphovirus Gp157 family protein	Q938M9	Temperate_phage	2.0e-49	98.8
WP_012560970.1\|1454510_1454765_-	hypothetical protein	Q938N0	Temperate_phage	1.8e-41	96.4
WP_012560971.1\|1454751_1455099_-	hypothetical protein	A0A097PAU3	Streptococcus_pyogenes_phage	4.6e-11	47.7
WP_021341158.1\|1455239_1456022_-	ATP-binding protein	A0A097PAQ0	Streptococcus_pyogenes_phage	2.7e-144	98.1
WP_021340639.1\|1456008_1456812_-	DnaD domain protein	A0A2P0VI76	Streptococcus_phage	2.4e-63	53.8
WP_012560973.1\|1456927_1457371_-	hypothetical protein	NA	NA	NA	NA
WP_000568478.1\|1457426_1457807_+	hypothetical protein	NA	NA	NA	NA
WP_000370473.1\|1457796_1458069_-	hypothetical protein	NA	NA	NA	NA
WP_012560974.1\|1458241_1458421_-	hypothetical protein	A0A1X9I5M8	Streptococcus_phage	1.2e-12	65.5
WP_001191791.1\|1458715_1458973_-	hypothetical protein	NA	NA	NA	NA
WP_021340658.1\|1459050_1459236_-	helix-turn-helix transcriptional regulator	J7KH19	Streptococcus_phage	1.4e-22	83.6
WP_023078400.1\|1459379_1459610_+	hypothetical protein	NA	NA	NA	NA
WP_021733331.1\|1459735_1459942_-	hypothetical protein	NA	NA	NA	NA
WP_000164463.1\|1460089_1460305_-	helix-turn-helix transcriptional regulator	J7KK54	Streptococcus_phage	5.0e-32	98.6
WP_011017887.1\|1460402_1461086_+	DUF4145 domain-containing protein	A0A1X9I5M7	Streptococcus_phage	1.2e-71	59.4
WP_011184610.1\|1461212_1461371_-	hypothetical protein	J7KH24	Streptococcus_phage	1.7e-21	92.3
WP_023078407.1\|1461429_1461810_+	DUF2513 domain-containing protein	A0A1S5SCT1	Streptococcus_phage	1.9e-34	56.7
WP_023078399.1\|1461789_1461927_-	hypothetical protein	NA	NA	NA	NA
WP_023078393.1\|1462286_1463033_+	helix-turn-helix transcriptional regulator	J7KJ52	Streptococcus_phage	2.3e-124	91.0
WP_002984270.1\|1463045_1463855_+	type II toxin-antitoxin system PemK/MazF family toxin	J7KDP1	Streptococcus_phage	3.8e-24	35.8
WP_023078397.1\|1464103_1465258_+\|integrase	site-specific integrase	Q938N9	Temperate_phage	1.2e-196	94.8
1465338:1465355	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1533170 : 1557650

Streptococcus_phage(85.71%)

integrase

attL 1537138:1537153|attR 1561555:1561570

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111674709.1\|1533170_1536149_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	9.7e-25	21.9
WP_109821180.1\|1536161_1537385_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	4.4e-16	21.6
1537138:1537153	attL	NA	NA	NA	NA
WP_111674710.1\|1537397_1538978_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	5.5e-120	49.2
WP_000420682.1\|1540124_1540439_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000985015.1\|1540454_1540841_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_111674711.1\|1540869_1542255_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	9.4e-265	99.8
WP_000879507.1\|1542257_1542410_+	hypothetical protein	NA	NA	NA	NA
WP_000398284.1\|1542432_1543638_+	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_001009056.1\|1543680_1543902_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000342539.1\|1544018_1544516_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_000506270.1\|1544490_1544997_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000331160.1\|1544980_1547428_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000804748.1\|1547430_1549608_+	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000769868.1\|1549604_1550606_+	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_111674712.1\|1550602_1551538_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	2.2e-169	98.7
WP_001791010.1\|1551782_1551899_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_000691736.1\|1551914_1553834_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
WP_000336323.1\|1553952_1554120_+	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_001227347.1\|1554179_1554533_-	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000804885.1\|1555037_1555460_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_000857133.1\|1555456_1555687_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000814511.1\|1556147_1556351_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_001291561.1\|1556432_1557650_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
1561555:1561570	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483407

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection