CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483438	Haemophilus influenzae strain NCTC12975 chromosome 1	3 crisprs	DinG,DEDDh,cas3,WYL	1	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483438_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483438_1

1101439-1101587

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LS483438_1

>merge|NZ_LS483438|1|1101439-1101587|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>NZ_LS483438|1|1|1101439-1101587|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483438.1\|WP_005658251.1\|1109384_1111412_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
NZ_LS483438.1\|WP_042593927.1\|1095840_1096194_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|225654
NZ_LS483438.1\|WP_042593925.1\|1107752_1109108_+\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388
NZ_LS483438.1\|WP_042602759.1\|1093485_1095834_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NZ_LS483438.1\|WP_011961860.1\|1105650_1106151_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
NZ_LS483438.1\|WP_021035408.1\|1096195_1096540_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_LS483438.1\|WP_005649974.1\|1107090_1107756_+\|two-component-system-response-regulator-QseB	unknown	unknown	gnl\|CDD\|182387
NZ_LS483438.1\|WP_005649971.1\|1106333_1106546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224399
NZ_LS483438.1\|WP_005688044.1\|1100241_1101309_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|131433
NZ_LS483438.1\|WP_005688053.1\|1090957_1092292_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_LS483438.1\|WP_005688057.1\|1088912_1089650_+\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|212111
NZ_LS483438.1\|WP_005688052.1\|1092447_1093320_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_LS483438.1\|WP_009500975.1\|1101708_1102257_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_LS483438.1\|WP_011961858.1\|1102327_1103368_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NZ_LS483438.1\|WP_005688046.1\|1097575_1100167_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	unknown	unknown	gnl\|CDD\|234980
NZ_LS483438.1\|WP_042593926.1\|1096676_1097483_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_LS483438.1\|WP_005654345.1\|1106660_1107026_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|129260
NZ_LS483438.1\|WP_005664896.1\|1103863_1105591_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
NZ_LS483438.1\|WP_011961859.1\|1103526_1103784_+\|phosphocarrier-protein-Hpr	unknown	unknown	gnl\|CDD\|182777
NZ_LS483438.1\|WP_005688055.1\|1089693_1090887_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|224826

Protein	Function_ID	Function_description	E-value
NZ_LS483438.1\|WP_005658251.1\|1109384_1111412_+\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
NZ_LS483438.1\|WP_042593927.1\|1095840_1096194_-\|YacL-family-protein	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	1.13056e-58
NZ_LS483438.1\|WP_042593925.1\|1107752_1109108_+\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.27076e-177
NZ_LS483438.1\|WP_042602759.1\|1093485_1095834_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LS483438.1\|WP_011961860.1\|1105650_1106151_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.49426e-100
NZ_LS483438.1\|WP_021035408.1\|1096195_1096540_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.3229e-81
NZ_LS483438.1\|WP_005649974.1\|1107090_1107756_+\|two-component-system-response-regulator-QseB	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	3.28549e-101
NZ_LS483438.1\|WP_005649971.1\|1106333_1106546_+\|hypothetical-protein	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	9.985e-06
NZ_LS483438.1\|WP_005688044.1\|1100241_1101309_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_LS483438.1\|WP_005688053.1\|1090957_1092292_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LS483438.1\|WP_005688057.1\|1088912_1089650_+\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.85636e-152
NZ_LS483438.1\|WP_005688052.1\|1092447_1093320_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_LS483438.1\|WP_009500975.1\|1101708_1102257_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.63664e-134
NZ_LS483438.1\|WP_011961858.1\|1102327_1103368_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NZ_LS483438.1\|WP_005688046.1\|1097575_1100167_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
NZ_LS483438.1\|WP_042593926.1\|1096676_1097483_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	2.57949e-160
NZ_LS483438.1\|WP_005654345.1\|1106660_1107026_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	8.01756e-57
NZ_LS483438.1\|WP_005664896.1\|1103863_1105591_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
NZ_LS483438.1\|WP_011961859.1\|1103526_1103784_+\|phosphocarrier-protein-Hpr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.7508e-37
NZ_LS483438.1\|WP_005688055.1\|1089693_1090887_+\|divalent-metal-cation-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	2.41376e-86

>NZ_LS483438.1|WP_005688044.1|1100241_1101309_+|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MLSIFVTFLGAFLTLIVMRPLANWIGLVDKPNYRKRHQGTIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNIYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGILMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITHAWRITRWVRRMKRRAKRLKKA
>NZ_LS483438.1|WP_005688046.1|1097575_1100167_+|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD
MLFPLSLSSPLTPSAVKIERENLKQFELENFSRYSIFELVENRSDFYDALLIQLWQEMGLSEQLGISLIAVGGYGRREMFPLSDLDFLILVEQTPIPEIEEKITQFIQFLWDCGFEVGHSVRTLQQCESEGKQDITIATNLLEARFLIGNRPHFDALNELVKRADFWSKEGFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALHHSGAQTLEDILQSGFIYPQEYQQLQESRAFLFKVRFALHLILTRYDNRLLFDRQIKVSELLGFRGEGNQAVEKMMKCFFQALHRISLISNLLIQHYRENVLSSNQATVIEQLDDDFQLINQCLCLRNSLVFQEKPARILDLFFYLTQYEQANIHSDTLRQLQISLEQLPQKLCEIPEAREKFLRLFNQPNSIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAQEHPIAHRIFSQLSDRTLLYIAALFHDIAKGRGGDHAELGAKDVANFARLHGLDRREIDTLAWLVQSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTEQQFAQGMKELLDYSEKSAENRKLAQQILTQDYSDIMPISIDQLWERCPEDYFVRNTPKQIAWHTSLLVDLVEALLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>NZ_LS483438.1|WP_042593926.1|1096676_1097483_+|type-I-methionyl-aminopeptidase
MAIPIRTKKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPNIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMINV
>NZ_LS483438.1|WP_021035408.1|1096195_1096540_-|iron-sulfur-cluster-insertion-protein-ErpA
MIDDIAVPLTFTDAAANKVKSLISEEENTNLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>NZ_LS483438.1|WP_042593927.1|1095840_1096194_-|YacL-family-protein
MDFQFTHYQGNVSVTCSMEHIAFANWFNTEVRSNSDKILTALSSAKSLIENQEKILIGAEYTLFLNADEVMVRANNLAIESDEILEQDFHYYDEESLAFCGTQDFIHFLQSYVDFIA
>NZ_LS483438.1|WP_042602759.1|1093485_1095834_-|penicillin-binding-protein-1B
MTSQHSAKKSSKNTPKNNRTFKGFLLKFSFTVLVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSRLESVKIADNLAFDEVIQILLDNEYRQTTMVAAPGDFKLEDDSIVVLRRAFPFPDKAEPQRVLRLRFADNKLNRIEDLVAVKAIDEFRLAPKLIAMLQSDNEDRLAIPLQNYPRLLIDTLILTEDRRFYEHNGINPVGILRALIANIRAGQTVQGGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLKLMLEHKMIGDELYQLLSQRPLGVQKKGQISRKYPAFIQTLQADLRRELGEHKMSSLLGARIFSTMDLKQQAQAENAVVNTVSQLQLKTKNPHLESAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTLINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGSYTISPYDVTKLYQTIANQGGRISLTTVDSITDRQGNLIFQHDKSVKQVVPQEAAFQTLFAMQQTVERGTARSLQKDYADLHLAGKTGTTNEARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPATVKWVGINQYGGWDCESYRTIPVWLNNGQNFCGEIASPSFTPTEAETTTPPQESLWDVLDNPNPPAQ
>NZ_LS483438.1|WP_005688052.1|1092447_1093320_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTQQSLTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIKDRAVVCKRLTPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPENLVEASKLPEAIFTPSSKEEVGNHDINISYAECEKLIGSDLAAQVKEKAIALYTEASEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSVDTYQAGTNPPSFDKQFVRDWLENSGWNKQAPAPKVPKNIIQKTVDKYQEALDLLTK
>NZ_LS483438.1|WP_005688053.1|1090957_1092292_-|argininosuccinate-synthase
MSNTILQNLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYNAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDVQFIEELGGRLEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEDGVPVALNGKHFDNAVDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPVDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>NZ_LS483438.1|WP_005688055.1|1089693_1090887_+|divalent-metal-cation-transporter
MASITHRRNAVLGAAFLMATSAIGPGFLTQTATFTNTLLASFGFVILLSILLDIGAQLNIWRIVIVSGKRAQDISNAVFPKAGYFLAALIVMGGLAFNIGNVGGAGLGLNSIFGIAPEMGAVISGIIAILIFLRKEAGLLMDRFAQLMGFIMVALTFYVMFKTEPPVAEAAYHSFIPEKIDPIAIVTLVGGTVGGYITFAGAHRLLDAGIQGEKAMAEVSRSSVSAILIASTMRVVLFLAVLGVVSKGVSLNPKNPAETPFEYVAGNFGQVLFGVVIWAASVTSVIGAAYTSVSFLTTLCPTIERNRNRWIIAFIVISTVVLVTVGKPAAVLVFVGTLNGLILPIALALILLAAYRSDIVGTYKHPVFLAFSGWFVVIIMAILSGKTIISYISSFFS
>NZ_LS483438.1|WP_005688057.1|1088912_1089650_+|5-oxoprolinase-subunit-PxpA
MKKIDLNADIAEGFPFDESLLQLLSSANIACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARVIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNHIKITA
>NZ_LS483438.1|WP_009500975.1|1101708_1102257_-|oligoribonuclease
MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>NZ_LS483438.1|WP_011961858.1|1102327_1103368_+|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKRKLTQNQTRRIQSNNAKTLHRHKKKDIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSLV
>NZ_LS483438.1|WP_011961859.1|1103526_1103784_+|phosphocarrier-protein-Hpr
MYSKDVEIIAPNGLHTRPAAQFVKEAKAFSSEITVTSGGKSASAKSLFKLQTLVLTQGTILTISADGEDEQQAVDHLVALIPTLE
>NZ_LS483438.1|WP_005664896.1|1103863_1105591_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRAAAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAGVAASKILDQQVTMLSEIDDEYLKERAGDIRDIANRLVKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNKVTKLVNTGDYLILDAINNQVYINPTASQIDELKALEAKISEEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCDGAERNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKQVVEAMNGRLTVLRTMDIGGDKELSYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELREEGRLFDNNIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNEFISHLYNPMHPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKVLADTALQKPTAAEIDQLIEEFLLENSLN
>NZ_LS483438.1|WP_011961860.1|1105650_1106151_+|PTS-glucose-transporter-subunit-IIA
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAVRPIGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRSDTVIEFDLALLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLALKK
>NZ_LS483438.1|WP_005649971.1|1106333_1106546_+|hypothetical-protein
MQNIQYECGETHHLKAQSASILLVMKGQLNLRSETTALSLKQGKVAFITAGAAYEVEGLIEGYAVVAKLP
>NZ_LS483438.1|WP_005654345.1|1106660_1107026_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQQIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRIEKVE
>NZ_LS483438.1|WP_005649974.1|1107090_1107756_+|two-component-system-response-regulator-QseB
MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
>NZ_LS483438.1|WP_042593925.1|1107752_1109108_+|two-component-system-sensor-histidine-kinase-QseC
MKNRSLTLRLISVLCLTALFVWLGSTLVAWWQVRHDVNKVFDAQQVLFAERLANSDLSTILLESSTTLNKNSQSVLKKSYDDDALAFAIFSKTGKLLFSDGRNGKDFIFNYKTGFYNANIYDDDDKWRIFWRMAANGELVIAVGQELDYREDLIEEMILGQMWIWFASLPILIIVLGWLIHKELRPIKRLSQEVQTRKSGDVSLLNTEGLPVEILPLVKNLNQFFDRTSAMLQRERRFTSDAAHELRSPLAALRIQTEVAQLAGDDVALREQALLHLTQGIDRASQLIEQLLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKASEPKQKQGQSILVSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAELHGFKVRLENVVKEGRRIGLKAIISL
>NZ_LS483438.1|WP_005658251.1|1109384_1111412_+|BCCT-family-transporter
MSLSQFMTKRTSFNPLVIGVTLFFILLLMAMIFIAPEQTQALLNQAKSGIFANFSWFYVLTFSVFLGFLLILSVSSLGNIKLGQDEEEPEFSFLSWLAMLFAAGMGVGLMFFGVAEPLTHYLSDITVGSAEHKQQEALLHTLFHWGIHAWAVYGTIALALAYFGFRYKLPLALRSCFYPLLKDRINGKIGDAIDVMALLATLFGIITTLGFGSSQLGAGLEQIGWISQNSFALQVGVIVVVMCLAVFSAISGIGKGVKILSEINLTLAFCLLLFVLISGPTLYLLSAFSDNIGNYFSNLVQLSFKTYAYEQEHTSWFSGWTVLYWAWWCSWAPFVGLFIARISKGRTIREFIFGVLVIPSLFGILWFTVFGNTAVWLNDGIAAGGLGEFISSPEILLFKFLNYLPLPTITGFVSLLVISLFFITSADSGIYVLNNIASRDKSLASPAWQAIMWGTLMSVVAIVLMQSGGLANLQTMTLIVALPFALLMLVMCFSLWKGLIADKKYFSTKVNPTSIFWSGDKWKSHLEQMMNQTQEKDILRFLKNTALPAMRELRQELTGKYNLSVEINTLFEQEEPALELVIHKESMRDFMYGIKSVGREVSEQLINDENLPHIQHSVTYEPYTYFFDGRVGYDVQYMDQDELIADMLKQYERYLSLLDDVGQELMAHEQTELAE

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Crispr_ID: NZ_LS483438_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483438_2

1130294-1130381

Orphan

Consensus_repeat	Method
ACCTTCCCCCGCAAGCAAGGGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483438_2

>merge|NZ_LS483438|2|1130294-1130381|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGGCAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGATACCTTCCCCCGCAAGCAGGGGAAGG

>NZ_LS483438|2|2|1130294-1130381|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGG	CAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGAT
ACCTTCCCCCGCAAGCAGGGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483438.1\|WP_005658219.1\|1123633_1124437_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgF	unknown	unknown	gnl\|CDD\|133038
NZ_LS483438.1\|WP_005689729.1\|1127065_1128121_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_LS483438.1\|WP_005654380.1\|1128144_1129518_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_LS483438.1\|WP_005688002.1\|1131728_1132805_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_LS483438.1\|WP_005687998.1\|1137555_1138221_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|234990
NZ_LS483438.1\|WP_005654147.1\|1135433_1136012_-\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_LS483438.1\|WP_005689725.1\|1130396_1131104_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_LS483438.1\|WP_042601554.1\|1138288_1140424_+\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
NZ_LS483438.1\|WP_005689723.1\|1131105_1131729_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_LS483438.1\|WP_005658217.1\|1124546_1125314_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NZ_LS483438.1\|WP_005658223.1\|1121962_1122736_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgD	unknown	unknown	gnl\|CDD\|225843
NZ_LS483438.1\|WP_005688000.1\|1136294_1137356_-\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
NZ_LS483438.1\|WP_005650033.1\|1134764_1135346_-\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NZ_LS483438.1\|WP_005658215.1\|1126350_1127079_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_LS483438.1\|WP_075913163.1\|1142757_1144395_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_LS483438.1\|WP_005658221.1\|1122747_1123632_+\|lipooligosaccharide-biosynthesis-N-acetyl-glucosamine-transferase-LsgE	unknown	unknown	gnl\|CDD\|366154
NZ_LS483438.1\|WP_110418037.1\|1140521_1142474_-\|adhesin	unknown	unknown	gnl\|CDD\|375681
NZ_LS483438.1\|WP_005654371.1\|1125451_1126216_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_LS483438.1\|WP_005689727.1\|1129576_1130212_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_LS483438.1\|WP_011961862.1\|1120889_1121951_+\|lipooligosaccharide-biosynthesis-family-4-glycosyltransferase-LsgC	unknown	unknown	gnl\|CDD\|340847

Protein	Function_ID	Function_description	E-value
NZ_LS483438.1\|WP_005658219.1\|1123633_1124437_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgF	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	6.66963e-120
NZ_LS483438.1\|WP_005689729.1\|1127065_1128121_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_LS483438.1\|WP_005654380.1\|1128144_1129518_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.13115e-164
NZ_LS483438.1\|WP_005688002.1\|1131728_1132805_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_LS483438.1\|WP_005687998.1\|1137555_1138221_+\|DUF2057-domain-containing-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	2.00852e-117
NZ_LS483438.1\|WP_005654147.1\|1135433_1136012_-\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	5.78855e-111
NZ_LS483438.1\|WP_005689725.1\|1130396_1131104_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	4.5237e-131
NZ_LS483438.1\|WP_042601554.1\|1138288_1140424_+\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NZ_LS483438.1\|WP_005689723.1\|1131105_1131729_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.08851e-127
NZ_LS483438.1\|WP_005658217.1\|1124546_1125314_-\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	2.3464e-84
NZ_LS483438.1\|WP_005658223.1\|1121962_1122736_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgD	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	6.22864e-55
NZ_LS483438.1\|WP_005688000.1\|1136294_1137356_-\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
NZ_LS483438.1\|WP_005650033.1\|1134764_1135346_-\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
NZ_LS483438.1\|WP_005658215.1\|1126350_1127079_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	4.4308e-140
NZ_LS483438.1\|WP_075913163.1\|1142757_1144395_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.04551e-33
NZ_LS483438.1\|WP_005658221.1\|1122747_1123632_+\|lipooligosaccharide-biosynthesis-N-acetyl-glucosamine-transferase-LsgE	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.68429e-32
NZ_LS483438.1\|WP_110418037.1\|1140521_1142474_-\|adhesin	gnl\|CDD\|375681	pfam18254, HMw1_D2, HMW1 domain 2. This domain is found in Actinobacillus pleuropneumoniae HMW1C (ApHMW1C). HMW1 adhesin is an N-linked glycoprotein that mediates adherence to respiratory epithelium through N-glycosylation of protein acceptor sites and O-glycosylation of sugar acceptor sites. This domain forms an all alpha domain (AAD) when combined with the N-terminal domain. The AAD interacts extensively with the C-terminal GT-B fold in order to create a unique groove with the potential to accommodate the acceptor protein.	2.90067e-48
NZ_LS483438.1\|WP_005654371.1\|1125451_1126216_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	3.40456e-98
NZ_LS483438.1\|WP_005689727.1\|1129576_1130212_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	8.06206e-140
NZ_LS483438.1\|WP_011961862.1\|1120889_1121951_+\|lipooligosaccharide-biosynthesis-family-4-glycosyltransferase-LsgC	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	3.30343e-135

>NZ_LS483438.1|WP_005689727.1|1129576_1130212_-|endonuclease-III
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>NZ_LS483438.1|WP_005654380.1|1128144_1129518_-|sodium-dependent-transporter
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENGGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISTPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLSGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>NZ_LS483438.1|WP_005689729.1|1127065_1128121_+|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLQINVKKQLGKLALQANIQVPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPTHLRKIGYVFQDARLFPHYTVKGNLRYGMKHVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSLDELLRLADRVVLMENGIVQAYDSVEKIWNSPIFAPWKGENEQSSVLALPVHLHNPPYKMTALSLGEQALWIHQVPANVGERVLVCIYSSDVSIILQKPEQTSIRNILRGKITQIEIQDSRVDLAVLVEGNKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>NZ_LS483438.1|WP_005658215.1|1126350_1127079_+|molybdate-ABC-transporter-permease-subunit
MLTQFFSFFNLTPMEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVLSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIAGETQTIPLAMYSFIQTPAAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAN
>NZ_LS483438.1|WP_005654371.1|1125451_1126216_+|molybdate-ABC-transporter-substrate-binding-protein
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAAEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK
>NZ_LS483438.1|WP_005658217.1|1124546_1125314_-|TOBE-domain-containing-protein
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTVLTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEQPLVNQPNQFSVNIKSLNEEEAILQFAESNIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>NZ_LS483438.1|WP_005658219.1|1123633_1124437_+|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgF
MKFSVLMSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGAVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCTYDWVFRMDTDDICVPDRFEKQVAFIEQHPESIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYMANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQGLLSGLFTFALRFGSRLLPTSLLKKLYQTFLRK
>NZ_LS483438.1|WP_005658221.1|1122747_1123632_+|lipooligosaccharide-biosynthesis-N-acetyl-glucosamine-transferase-LsgE
MLSIIVPSYNRKAEVPALLESLTQQTSSNFEVIIVDDYSKERVVVEQRYSFPVTVIRNETNQGAAESRNIGARASKGDWLLFLDDDDRFMPEKSEKILQVIEQNPDINFIYHPAKCEMVNEGFSYVTQPIEPQEISTERILLANKIGGMPMVAIKKEMFLKIGGLSTALRSLEDYDFLLKLLQEPSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQARNFDINASYILAYPHIMNLSRKAAKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>NZ_LS483438.1|WP_005658223.1|1121962_1122736_+|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgD
MLKKYLISLDKDIQRRKLFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAHYFRNVTKGEIGCTLSHLSVYQKIIEDNDIAEDSYALVCEDDALFHSDFQQNLTALLSEKLEAEIILLGQSKINSFNDTDLEINYPTTFSFLCKKTGNVNYAFPYKSYFAGTVGYLIKKSAARRFIQQISQNKPFWLADDFLLFEQDFNIRNKVVRPLMVIENPVLISNLESVRGSLSNNLLKKLMKYPLKKIFAIKKNLAN
>NZ_LS483438.1|WP_011961862.1|1120889_1121951_+|lipooligosaccharide-biosynthesis-family-4-glycosyltransferase-LsgC
MKKIGFFIMNIESAGGTERVSINVANALAKQGYDVSFISIVGNKPFFQVDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDTLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRLVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIITIANPNTLLPKNKLAKWENKTILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALDIEDSVNFTPRTNDVSFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEKNNIEEMVKGLDLLINNPELYQQMSDKSRLMSEDYGIEKIIEEWKGIL
>NZ_LS483438.1|WP_005689725.1|1130396_1131104_-|electron-transport-complex-subunit-E
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLSLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNVKK
>NZ_LS483438.1|WP_005689723.1|1131105_1131729_-|electron-transport-complex-subunit-RsxG
MGTVKITSRYGILLGFIALLCTIISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQLSTQVK
>NZ_LS483438.1|WP_005688002.1|1131728_1132805_-|electron-transport-complex-subunit-RsxD
MFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVLLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLILKRIIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>NZ_LS483438.1|WP_005650033.1|1134764_1135346_-|electron-transport-complex-subunit-RsxB
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>NZ_LS483438.1|WP_005654147.1|1135433_1136012_-|electron-transport-complex-subunit-RsxA
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>NZ_LS483438.1|WP_005688000.1|1136294_1137356_-|protease-SohB
MLNDILTGYGIFILEILTILLLILAILGLIISYRQHNKSKVGELEIKDLSEEFNEQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGETLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKSEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>NZ_LS483438.1|WP_005687998.1|1137555_1138221_+|DUF2057-domain-containing-protein
MKLRAVVLGLATLCASTATFAGMVSTSSNLEFLAIDGQKASKSLGKAKTFTVDDTQNHQVVVRLNEIVGSGSNQSLFESNPVIVTFQGNAEDLVISAPVIRNLDSGDKFNQMPNITVKTKSGNAISAKVDVLKQEGLFPSGNVLNDLAEYNASGAAASVSKFAATTVASSVAVAPAGNAKANKGKVVVQGENVAEQQLQYWFQQADKETQTRFLNWAKSHK
>NZ_LS483438.1|WP_042601554.1|1138288_1140424_+|TIGR01666-family-membrane-protein
MNIRLNTKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPRTQRMLRYYFAAQDIHERTNSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKPYHFNERVERALLGTLHSFELYRAQHLNDQDELIDIQTLLDNLQSINWQLRQLAQDTTDTEQLAQIHTEQITGLKNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKQGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARRNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQEMTAEERAVFSLPYQQLNLITQLLPQFYEYFRKESC
>NZ_LS483438.1|WP_110418037.1|1140521_1142474_-|adhesin
MTKENLQNTPQNTTASPVESNNNQTSPQMLQQSPKPSLLRLEQHIAKKDYEFACRELMVILEKMDANFGGVHDIEFDAPAQLAYLPEKLLIHFATRLANAITTLFSDPELAISEEGALKMISLQRWLTLIFASSPYVNADHILNKYNINPDSEGGFHLATDNSSIAKFCIFYLPESNINMSLDALWAGNQQLCASLCFALQSSRFIGTASAFHKRAVVLQWFPKKLAEIANLDELPANILHDVYMHCSYDLAKNKHDVKRPLNELVRKHILTQGWQDRYLYTLGKKDGKPVMMVLLEHFNSGHSIYRTHSTSMIAAREKFYLVGLGHEGVDKIGREVFDEFFEISSNNIMERLFFIRKQCETFQPAVFYMPSIGMDITTIFVSNTRLAPIQAVALGHPATTHSEFIDYVIVEDDYVGSEDCFSETLLRLPKDALPYVPSALAPQKVDYVLRENPEVVNIGIAATTMKLNPEFLLTLQEIRDKAKVKIHFHFALGQSTGLTHPYVKWFIESYLGDDATAHPHAPYHDYLAILRDCDMLLNPFPFGNTNGIIDMVTLGLIGVCKTGDEVHEHIDEGLFKRLGLPEWLIADTRETYIECALRLAENHQERLELRRYIIENNGLQKLFTGDPRPLGKILLKKTNEWKRKHLSKK
>NZ_LS483438.1|WP_075913163.1|1142757_1144395_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MKNIKSKLKLSAISVLLGLASLSAHTEEAFLVKGFQLSGALETLSENAQLSVAKSLSKYQGTQTLTSLKTAQLELQAVLDKIEPNKFDVVLPQQTITDGNVMFELVSKSVAESQVFYKASKGYSEENIARSLPSLKQGKMYEDGRQWFDLREFNMAKENPLKVTRVHYELNPKNKTSDLVVAGFSPFGKTRSFVSYDNFGAREFNYQRVSLGFVNANLTGHDDVLNLNALTNVKAPSKSYAVGVGYTYPFYSKHQSLSLYTSMSYADSNDIDGLPSAINRKLSKGQSISANLKWSYYLPTFNLGMEDQFKINLGYNYRHINQTSELNRLGETKKKFAVSGVSAGIDGHIQFTPKTIFNIDLTHHYYASKLPGSFGMERIGETFNRSYHISTASLGLSQEFAQGWHFSSQLSGQFTLQDISSIDLFSVTGTYGVRGFKYGGASGERGLVWRNELSMPKYTRFQISPYAFYDAGQFRYNSENAKTYGEDMHTVSSAGLGIKTSPTQNLSLDAFVARRFANANSDNLNGNKKRTSSPTTFWGRLTFSF

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Crispr_ID: NZ_LS483438_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483438_3

1198953-1199047

Orphan

Consensus_repeat	Method
CAGGAGCTGCTGCCTGTGGTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483438_3

>merge|NZ_LS483438|3|1198953-1199047|CRISPRCasFinder
CAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAGCAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAGCAGGAGCTGCTGTCTGTGGTGCT

>NZ_LS483438|3|3|1198953-1199047|CRISPRCasFinder
CAGGAGCTGCTGCCTGTGGTGCT	TGTGCAGTAGTAGCAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAG
CAGGAGCTGCTGTCTGTGGTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483438.1\|WP_005694297.1\|1204980_1206888_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_LS483438.1\|WP_005659661.1\|1190744_1191440_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|168719
NZ_LS483438.1\|WP_005657628.1\|1189695_1190388_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_LS483438.1\|WP_005687337.1\|1202656_1203115_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_LS483438.1\|WP_005652934.1\|1188188_1188482_+\|LapA-family-protein	unknown	unknown	gnl\|CDD\|226294
NZ_LS483438.1\|WP_005663527.1\|1196398_1197823_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_LS483438.1\|WP_005657614.1\|1195697_1196240_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_LS483438.1\|WP_005689530.1\|1211064_1212261_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NZ_LS483438.1\|WP_005652936.1\|1188481_1189672_+\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|225504
NZ_LS483438.1\|WP_005657620.1\|1191505_1192750_-\|uracil-permease	unknown	unknown	gnl\|CDD\|273276
NZ_LS483438.1\|WP_005652973.1\|1209472_1210135_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_LS483438.1\|WP_005657618.1\|1192853_1193480_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_LS483438.1\|WP_011272709.1\|1208198_1209452_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_LS483438.1\|WP_011272710.1\|1206974_1208120_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_LS483438.1\|WP_038441057.1\|1212262_1212961_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	unknown	unknown	gnl\|CDD\|236774
NZ_LS483438.1\|WP_005657626.1\|1190394_1190715_+\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_LS483438.1\|WP_011272712.1\|1199696_1202357_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_LS483438.1\|WP_042593947.1\|1193619_1195686_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NZ_LS483438.1\|WP_011272711.1\|1203271_1204714_-\|YdgA-family-protein	unknown	unknown	gnl\|CDD\|227644
NZ_LS483438.1\|WP_011272708.1\|1210232_1211033_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LS483438.1\|WP_005694297.1\|1204980_1206888_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_LS483438.1\|WP_005659661.1\|1190744_1191440_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|168719	PRK06893, PRK06893, DnaA regulatory inactivator Hda.	5.29704e-148
NZ_LS483438.1\|WP_005657628.1\|1189695_1190388_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	2.06916e-142
NZ_LS483438.1\|WP_005687337.1\|1202656_1203115_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	8.28169e-91
NZ_LS483438.1\|WP_005652934.1\|1188188_1188482_+\|LapA-family-protein	gnl\|CDD\|226294	COG3771, COG3771, Predicted membrane protein [Function unknown].	2.02351e-38
NZ_LS483438.1\|WP_005663527.1\|1196398_1197823_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_LS483438.1\|WP_005657614.1\|1195697_1196240_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	3.18643e-99
NZ_LS483438.1\|WP_005689530.1\|1211064_1212261_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_LS483438.1\|WP_005652936.1\|1188481_1189672_+\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|225504	COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism].	0
NZ_LS483438.1\|WP_005657620.1\|1191505_1192750_-\|uracil-permease	gnl\|CDD\|273276	TIGR00801, Uric_acid_permease, uracil-xanthine permease. The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the functionally characterized members of the NCS2 family are transporters specific for nucleobases including both purines and pyrimidines. However, two closely related rat members of the family, SVCT1 and SVCT2, localized to different tissues of the body, cotransport L-ascorbate and Na+ with a high degree of specificity and high affinity for the vitamin. The NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39). [Transport and binding proteins, Nucleosides, purines and pyrimidines].	9.49123e-138
NZ_LS483438.1\|WP_005652973.1\|1209472_1210135_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	7.9376e-97
NZ_LS483438.1\|WP_005657618.1\|1192853_1193480_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.24161e-133
NZ_LS483438.1\|WP_011272709.1\|1208198_1209452_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_LS483438.1\|WP_011272710.1\|1206974_1208120_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_LS483438.1\|WP_038441057.1\|1212262_1212961_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	gnl\|CDD\|236774	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA.	5.2642e-122
NZ_LS483438.1\|WP_005657626.1\|1190394_1190715_+\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	3.70882e-57
NZ_LS483438.1\|WP_011272712.1\|1199696_1202357_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_LS483438.1\|WP_042593947.1\|1193619_1195686_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_LS483438.1\|WP_011272711.1\|1203271_1204714_-\|YdgA-family-protein	gnl\|CDD\|227644	COG5339, COG5339, Uncharacterized protein conserved in bacteria [Function unknown].	7.84943e-114

>NZ_LS483438.1|WP_005663527.1|1196398_1197823_-|dihydrolipoyl-dehydrogenase
MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKHANKNGIYFSEPRIELDEVRAGKEAVVAKLTGGLAGMAKARKVTVVEGLATFTDSHTLVARDRDGNPTTVKFDNAIIAAGSRPVQLPFIPHEDPRIWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKDVVGIYTKQVEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPNGKLIDAGKAGVEVDDRGFIHVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASECSEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNAKAKKK
>NZ_LS483438.1|WP_005657614.1|1195697_1196240_-|adenine-phosphoribosyltransferase
MTTQLDLIKSSIKSIPNYPKEGIIFRDITTLLEVPAAFKATIDLIVEQYRDKGITKVLGTESRGFIFGAPVALALGLPFELVRKPKKLPRETISQSYQLEYGQDTLEMHVDAISQGDNVLIIDDLLATGGTVEATVKLVQRLGGTVKHAAFVINLPELGGEKRLNNLGVDCYTLVNFEGH
>NZ_LS483438.1|WP_042593947.1|1193619_1195686_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQKSSDDNEHFSFLAKHISPEDVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFHPKFLTAVPKTNTTITPPPSTPSAVENTGNYVDVPVLSQNIKSAYSQAKPNKTSIPNLASLSALDALEHLTQLENQERQEHKAESLAVVSETLHHIQELDEEKSHKKMTALPVREMTEPKPKHIEKPTSPPNAAQAPQENSTEENSSDDNAEVAQDEQEILSAGTYRWEWSNPELAKADTGVRPSDIKQAILKDITPELRLKIITQTQQQDEWADIVERSGVTGFSKELALNCFLQSKTDDEINLGLHSEKSHLRQDRSIKNLVEALSKLQGKDIRLTINLDDSNVTTPIEYRRNIYQALREKAQNELQKDSKLQMLLNEFDAKLDVESIRPV
>NZ_LS483438.1|WP_005657618.1|1192853_1193480_-|uracil-phosphoribosyltransferase
MKLVEVKHPLVKHKLGVMREAEIDTKKFRELATEIGSLLTYEATSDLETEKVTINSWNGPVEIDRIKGKKVTVVPILRAGLGMMDGVLEHVPSARISVVGIYRNEETLKPVPYFQKLASDLEERLAIVVDPMLATGGSMIATLDLLKAKGCKHIKVLVLVAAPEGIKALEAAHPDIELYCASIDSHLNEQGYIIPGLGDAGDKIFGTK
>NZ_LS483438.1|WP_005657620.1|1191505_1192750_-|uracil-permease
MTNQTSSFPSENQSKLKQSFVGLQMLFVAFGALVLVPLITGLDSNTALLTAGVGTLLFQFCTGKQVPIFLASSFAFIAPIQYGVQTWGIATTMGGLAFTGLVYFALSTLVKLRGAEALQRFFPPVVVGPVIIIIGMGLAPIAVDMSLGKNSNYAYNDAVLVSMVTLLTTLSVAVFAKGLMKLIPIMFGITVGYILCLFLGLINFQPVIDAPWFSLPKLTTPEFNLEAILYMLPIAIAPAVEHVGGIMAISSVTGKDFLKKPGLHRTLLGDGVATAAASLVGGPPNTTYAEVTGAVMLTRNFNPNIMTWAAVWAIAISFCGKVGAFLSTIPTIVMGGIMMLVFGSIAVVGISTLIRGKVDVTEARNLCIISVVMTFGIGNMFVDVGNVSLKGISLCAIVAIILNLVLPKAKNEVE
>NZ_LS483438.1|WP_005659661.1|1190744_1191440_-|DnaA-regulatory-inactivator-Hda
MNKQLPLPIHQIDDATLENFYGDNNLLLLDSLRKNSSDLKQPFFYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKEILNL
>NZ_LS483438.1|WP_005657626.1|1190394_1190715_+|stress-response-translation-initiation-inhibitor-YciH
MSDSVLVYSTDVGRIKEEKASVVRPKGDGVVRIQKQTSGRKGAGVSVITGLDLSDEDLKKLAVELKKRCGCGGSVKNGIIEIQGEKRDLLKQLLEQKGFKVKLSGG
>NZ_LS483438.1|WP_005657628.1|1189695_1190388_+|orotidine-5'-phosphate-decarboxylase
MTSKIIVALDYEKEAEALALVDQIDPSLCRLKVGKEMFTTLGINFVKQLHQRNFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLRMMEEAKKILEPYGKDAPLLIAVTVLTSMEDLDLLQIGINASPMEQVLRLAHLTQRAGLDGVVCSPQEVEILRNTCGKEFKLVTPGIRPIGTDFGDQRRVMTPTAAIRAGSDYLVIGRPITQADNPAEVLRSINVSIG
>NZ_LS483438.1|WP_005652936.1|1188481_1189672_+|lipopolysaccharide-assembly-protein-LapB
MIELLFLLLPIAAAYGWYMGRRSAKKDQDDISNKLSRDYVTGVNFLLSNQTDKAVDLFLDMLQKQEIENEIESHSQFEAELTLGNLFRSRGEVDRALRIHQALDLSPNYTFEQKLLAKQQLARDFMVVGFFDRAENLYILLVDEPEFAENALQQLLVIYQKTKEWKKAVNIAEKLAKIKPQENNIELAQCYCEYSQSLEPESAVEKRSVLQKALSVSPTCVRASLLLANLAMLDGQYQQAVEILENVLEQNPDYTGEILSPLKHCYEELNQLDNFELFLIRAGQIINNDEVELALVKLIEEKDGKSAAQAKLYQQLTKNPSTLIFHRFMQYQIDDAEDGRGKESLILLHKMVGERIKQTSPYRCTNCGYQIHKLLWNCPSCRQWESIKPVSNQEHN
>NZ_LS483438.1|WP_005652934.1|1188188_1188482_+|LapA-family-protein
MIKYILGIVIFIAIVLVAITIGANNDQIITFNYIVAESQFQLSSLVAILFGLGLILGWLITAFFYIKLKLKNMALARQVKRQTLQINELTTTRDKVA
>NZ_LS483438.1|WP_011272712.1|1199696_1202357_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSEILKNDIDPIETQDWLQSLDSLIREEGVERAQYIVEQVIGQARTSGVSLPTGVTTDYVNTIPVAEQPAYPGDHAIERRIRSAVRWNAIAMVLRSQKKDLDLGGHISTFQSAATMYEVCYNHFFKAATEKNGGDLIFFQGHAAPGMYARAFLEGRLTEEQMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLDNRGLKDTKDQKVYAFLGDGEMDEIESKGALTFAAREKLDNLIFTISCNLQRLDGPVNGNGKIVQELEGLFTGAGWEVIKVLWGSDWDKLFAKDTSGKLTQLMMEVVDGDYLTFKSKDGAYIREHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQNATKPVVILAHQVKGYKIPEAESKNTAHQSKKMSYESLKGFRDFFELPLTDEQVEKLEYIKFAEGTPEYEYLHGHRKALNGYVPARRTKFDVEYKVPALEEFKALLEEQPRGISTTMAFTRALNILLKDKNIGKTIVPMIADEARTFGMEGLFRQVGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEGINELGATASWLAAANSYSVNNQPMIPFFIYYSMFGFQRVGDMMWAAGDQLARGFMVGGTSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPSFAFEVAVIMQDGINRMYGEKQEDVFYYMTTLNEVMDQPAMPAGAEEGIRKGLYKFETVEGKKGKGHVQLLGSGAIMRHVREAAQILANDYGVTSDVFSAPSFNELAREGHDAARWNLLHPTETQRVPYVAQVLADLPTVASTDYVKGYADQIRAFVPSKHYHVLGTDGFGRSDSRANLREHFEVDARYVVVAALSQLAKEGTVSNQVVADAIAKFGLNVDRINPLYA
>NZ_LS483438.1|WP_005687337.1|1202656_1203115_+|methylglyoxal-synthase
MQTTTRTLTQHKRIALVAHDSCKKNLLNWTQKHKEALKPHILYATGTTGHILERETGLSIQSLLSGPMGGDQQLGGLIAEKKIDMMIFFWDPMNAAPHDPDVKALMRIATVWNIPVAINQSSADFLLTSVLFEQDVEIDVPDYEGYLKERLA
>NZ_LS483438.1|WP_011272711.1|1203271_1204714_-|YdgA-family-protein
MKKSKIAAGVVISLAAVWCAGAWFTGKKAEEEYLHQLKQLNQLFTKTEALEESKIFYKNIKFERGLFASHIQDQIEIHKANETIIIPLSSTLYHGPLPLDRVAKLNFVPAIFSSQTLLGKNATTQAFFDITESEKPLQLNFAMNYSLSGNAELKLASGQYHNEQSKTDFDWSNVVLNIDLNQNTPNNYVLSVDTFNSNAPNHAVSTASSIKIKDLVVQGSLQSTKWPFIYSGNINSKIGYFEQNTESPETGEKFSLIQKNSQANLTTQVEGDTVNIINKTNLDELHINGNNLGKVTNNVEFNHIDGNALQELLNILVAIGKADSDMPLSKTLVQKLQQAGMIIANNQPQIKFTPLSISDEKGKVALDLNIALVPNPKFDLMRSGLYKQFKDFSINFDVNKETAISLLSKFVPENQKQDFVHRLNELVTEGEVNDIIVNTDKTVTLTLALENNDLKLNGKPIPEEQLKVVLFILVMGGFGR
>NZ_LS483438.1|WP_005694297.1|1204980_1206888_+|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAVMDGDKARVIENAEGARTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITRADNGDAWVNVKGDKLAPPQISAEVLKKMKKTAEDFLGESVTEAVITVPAYFNDAQRQATIDAGKIAGLDVKRIINEPTAAALAFGLGSSKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQNIDLRNDAMALQRVKEAAEKAKIELSSAQSTEVNLPYITADATGPKHLALNITRAKLEALVEDLVASSIESLKAVLKDADKGVSEIHDIILVGGQTRMPLVQQKVAEFFGKEARKDVNPDEAVAIGAAVQGGVLKGDVKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLEGINPAPRGMPQIEVTFDIDANGVINVSAKDKNTGKEQQIRIQASSGLSDEEIQQMVRDAEANADADRKFEEVVQARNQADGIAHATRKQIAEAGDALSVADKEKIEAAVAELETAAKGEDKAEIEAKIEAVIKASEPLMQAVQAKAQQAGGEQPQQSSAKDDGVVDAEFEEVKDNK
>NZ_LS483438.1|WP_011272710.1|1206974_1208120_+|molecular-chaperone-DnaJ
MAKKDYYEVLGLQKGASEDDIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGGGTGGFGGGFGGADFGDMFGDIFGDIFGGGRGRQRVVRGEDLRYDLEISLEEAVKGTTKDIQINTLAHCDSCGGSGAEKGSKVETCPHCHGSGRIRRQQGFFVSESICPTCHGSGKKIEKPCRSCHGEGRVHKKENLSVKIPAGVDTGNQLRLAGKGAAGENGAPAGDLYVVIHVREHNIFERDGSNLYCEVPISFATAALGGEIEVPTLDGRVKLKIPAETQTGKLFRMRGKGVASTRSGYAGDLICRIVVETPVNLTSEQKELLHKLEESLQGKDLSKHAPKSSGFLDGVKKFFDNLGKSDK
>NZ_LS483438.1|WP_011272709.1|1208198_1209452_-|glutamate-5-semialdehyde-dehydrogenase
MLEQMGKQAKDAAFILAQLTTAEKNCALSIIAEQLQQQAPLILAENAKDIELAKQNGLSDALIDRLLLTQERLQSIANDVRHVISLADPVGKIIDGGTLDSGLKIERVRTPLGVIGTIYEARPNVTIDVASLCLKTGNAVILRGGKETQFSNKILIEVVQNALEQAGLPKFAVQAITDPNRELVMQLLKLDRYVDMIIPRGGSGLHELCKQHSTIPVIVGGVGVCHTFVEKSADQNKAIFVIDNAKTQRPSTCNTLETLLVQHSIAEEFLPKLVSHLATKNVKYHAKSTALNILKQAGANVCEVTEKELRKEWGSLDLNVVVVEDIHAAIEHIRQYGTQHSESILTSSQNLARQFINQVDAAAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTSYKWVCEGEYTVRK
>NZ_LS483438.1|WP_005652973.1|1209472_1210135_-|trimeric-intracellular-cation-channel-family-protein
MLLSILYIIGITAEGMTGALAAGREKMDIFGVIIIASVTAIGGGSVRDVLLGHYPLGWVKHPEYFLMVASAAVITVYVAPFINHFMRYFRTIFLVLDAMGLVVYSIIGAQIAMDMGHSLTIVCIAGCITGAFGGVLRDMLCNRIPLVFQKELYASIALFATLTYYALSTLQVEHTLAVLLTLISSFTLRLLAIHFEWGLPVFNYQELTSEEQDKLPNKKK
>NZ_LS483438.1|WP_011272708.1|1210232_1211033_+|hypothetical-protein
MSEQSSKYIAALLAVLSISMVLGIDLFIFSLQSEKQTMPHLGVGVLVAQLISLLVFYRGEICPGQRGRLIKVNMTFAIYWAVWLLISLLQNNHTLTNVMSVCGLSVVYFIWKQPKTEKIRNSFLLMAALIAGLGCLSYLMIFTVLPASDFAEYNPFAPILSGVILANLALVIARNRLQGFIALLPLAMIILLALNALAMFLFLLLNGMESAVNSDSVFAYIIYFVCHFVIAAILILHSFQKWILSTNSLFILLFIAVCLPLWMVFV
>NZ_LS483438.1|WP_005689530.1|1211064_1212261_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MNQQKSTFIFILTLGILSMLPPFGVDMYLPSFLEIAKDLGVSPEQVQHTLTSFAYGMAFGQLFWGPFGDSFGRKPIILLGVIVGALTALVLTEINSVGNFTALRFVQGFFGAAPVVLSGALLRDLFSKDQLSKVMSTITLVFMLAPLVAPIIGGYIVKFFHWHAIFYVISLVGLLAAALVFFIIPETHKKENRIPLRLNIIARNFLLLWKQKEVLGYMFAASFSFGGLFAFVTAGSIVYIGIYGVPVDQFGYFFMMNIVTMIFASFLNSRFVTKVGAETMLRIALAIQFLSGMWLILTALLDLGFWPMAIGVAFFVGPNPVISSNAMASALEKCPQMAGTTNSLIGSVRFAVGAIMGSLVASMKMDTAAPMLFTMGACVVISVLAYYFLTSRNLKSRG
>NZ_LS483438.1|WP_038441057.1|1212262_1212961_-|16S-rRNA-pseudouridine(516)-synthase-RsuA
MRLDKFIAENTGLTRSQATKAIRQSAVKINGEIVKSGAVQISQEDKIYFEDELLTWVEEGQYFMLHKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGFVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYAAACSEGILLRGEKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LS483438_3	3.1\|1198976\|49\|NZ_LS483438\|CRISPRCasFinder	1198976-1199024	49	NZ_LS483438.1	1198940-1198988	1	0.98

1. spacer 3.1|1198976|49|NZ_LS483438|CRISPRCasFinder matches to position: 1198940-1198988, mismatch: 1, identity: 0.98

tgtgcagtagtagcaggagctgctgcctgtggtgcttgtgcagtagtag	CRISPR spacer
tgtgcagtagtatcaggagctgctgcctgtggtgcttgtgcagtagtag	Protospacer
************ ************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1225776 : 1288472

Mannheimia_phage(53.12%)

tRNA,head,terminase,portal,capsid,tail,plate,integrase,protease

attL 1222110:1222126|attR 1291967:1291983

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1222110:1222126	attL	NA	NA	NA	NA
WP_011961904.1\|1225776_1227747_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_011272700.1\|1227743_1227917_+	DUF5363 domain-containing protein	NA	NA	NA	NA
WP_038441069.1\|1228018_1231459_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_011272698.1\|1231511_1232903_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	7.2e-23	31.2
WP_005694317.1\|1233096_1233987_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA
WP_038441072.1\|1233988_1235293_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_005689857.1\|1235580_1236261_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA
WP_005689855.1\|1236418_1237495_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_005689853.1\|1237549_1240192_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	2.1e-103	32.3
WP_005687300.1\|1240357_1242121_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_005687298.1\|1242257_1242734_-	hypothetical protein	NA	NA	NA	NA
WP_005687296.1\|1242969_1243776_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005659609.1\|1243827_1244529_+	hydroxyacylglutathione hydrolase	A0A1X9I5D3	Streptococcus_phage	3.3e-08	29.1
WP_005659606.1\|1244572_1245433_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA
WP_111738707.1\|1245545_1247594_-\|tRNA	methionine--tRNA ligase	A0A2K9V939	Bandra_megavirus	2.2e-60	29.3
WP_042593952.1\|1247744_1248857_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_042593953.1\|1248903_1249566_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_042593954.1\|1249679_1250354_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA
WP_154231901.1\|1250425_1250581_+	hypothetical protein	NA	NA	NA	NA
WP_011272688.1\|1251062_1252073_-\|portal	phage portal protein	Q19UT6	Mannheimia_phage	1.8e-116	60.4
WP_038441084.1\|1252082_1253864_-\|terminase	terminase	A0A0M3LRV4	Mannheimia_phage	5.0e-218	65.4
WP_011272686.1\|1254028_1254844_+\|capsid	GPO family capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	6.9e-66	60.5
WP_042593955.1\|1254864_1255914_+\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	1.7e-88	51.3
WP_011272685.1\|1255925_1256576_+\|terminase	terminase	Q19US0	Mannheimia_phage	4.1e-45	46.0
WP_005668469.1\|1256869_1257376_+\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	2.8e-33	51.0
WP_005668467.1\|1257375_1257585_+\|tail	tail protein X	NA	NA	NA	NA
WP_005668464.1\|1257586_1257808_+	hypothetical protein	NA	NA	NA	NA
WP_005668462.1\|1257800_1258319_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
WP_011272684.1\|1258303_1258654_+	chemotaxis protein	NA	NA	NA	NA
WP_005672208.1\|1258828_1259044_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	1.1e-10	47.9
WP_038441087.1\|1259040_1259304_+	hypothetical protein	NA	NA	NA	NA
WP_038441089.1\|1259269_1259740_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	7.3e-28	45.3
WP_011272680.1\|1259739_1260201_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	5.7e-25	48.2
WP_005653079.1\|1260201_1260549_-	hypothetical protein	NA	NA	NA	NA
WP_011272679.1\|1260652_1260835_+	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	8.8e-06	47.8
WP_011272678.1\|1260845_1261184_-	hypothetical protein	NA	NA	NA	NA
WP_075913143.1\|1261259_1261433_+	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	3.2e-05	53.3
WP_042593957.1\|1261410_1261671_-	hypothetical protein	NA	NA	NA	NA
WP_172455783.1\|1264623_1264791_+	hypothetical protein	NA	NA	NA	NA
WP_011272674.1\|1265316_1265874_+	hypothetical protein	NA	NA	NA	NA
WP_005653088.1\|1265882_1266311_+	hypothetical protein	NA	NA	NA	NA
WP_011272673.1\|1266414_1267014_+\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	4.2e-44	66.0
WP_005633786.1\|1267015_1267354_+	GPW/gp25 family protein	Q19UQ6	Mannheimia_phage	3.4e-19	56.6
WP_011272672.1\|1267350_1268265_+\|plate	baseplate J/gp47 family protein	Q19UQ5	Mannheimia_phage	5.1e-94	59.5
WP_011272671.1\|1268254_1268791_+\|tail	phage tail protein I	M1T2R2	Escherichia_phage	1.6e-50	52.5
WP_105882589.1\|1268799_1271322_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	1.8e-253	68.7
WP_042593887.1\|1271333_1271933_+	hypothetical protein	Q94MX9	Haemophilus_virus	7.8e-91	89.5
WP_042593888.1\|1272191_1273376_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1S6KZY7	Salmonella_phage	2.3e-102	48.2
WP_005655097.1\|1273379_1273886_+\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	5.4e-53	59.5
WP_005655095.1\|1273951_1274251_+\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	1.2e-12	42.9
WP_005633772.1\|1274250_1274397_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
WP_162877721.1\|1274564_1274726_+	hypothetical protein	NA	NA	NA	NA
WP_042593889.1\|1274725_1275163_+\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	9.1e-41	57.3
WP_042593890.1\|1275162_1276383_+	phage late control D family protein	R9QBT3	Mannheimia_phage	2.7e-122	57.5
WP_005672606.1\|1276400_1276790_-	hypothetical protein	NA	NA	NA	NA
WP_042593891.1\|1276849_1278610_-	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_042593892.1\|1278854_1279616_-	HNH endonuclease	NA	NA	NA	NA
WP_089503506.1\|1279620_1280271_-	helix-turn-helix domain-containing protein	Q76H56	Enterobacteria_phage	5.8e-23	36.1
WP_042593894.1\|1280441_1280861_-	hypothetical protein	NA	NA	NA	NA
WP_005642278.1\|1280923_1281166_-	hypothetical protein	NA	NA	NA	NA
WP_042593895.1\|1281203_1281497_-	hypothetical protein	NA	NA	NA	NA
WP_005633752.1\|1281577_1281733_+	hypothetical protein	NA	NA	NA	NA
WP_042593896.1\|1281949_1282306_+	hypothetical protein	NA	NA	NA	NA
WP_042593897.1\|1282498_1282786_+	hypothetical protein	NA	NA	NA	NA
WP_042593898.1\|1282877_1283141_+	hypothetical protein	NA	NA	NA	NA
WP_042593899.1\|1283158_1283539_+	hypothetical protein	NA	NA	NA	NA
WP_005663359.1\|1283542_1283785_+	hypothetical protein	NA	NA	NA	NA
WP_005663355.1\|1283912_1284221_+	hypothetical protein	NA	NA	NA	NA
WP_042599665.1\|1284230_1286417_+	replication endonuclease	Q94N00	Haemophilus_virus	5.4e-166	42.7
WP_042593902.1\|1286471_1286993_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	4.3e-29	42.4
WP_005652916.1\|1286992_1287160_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_042593903.1\|1287140_1288472_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	9.3e-44	33.0
1291967:1291983	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1373453 : 1385486

Acinetobacter_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074031221.1\|1373453_1374458_-	phosphate ABC transporter substrate-binding protein PstS	A0A222YW41	Synechococcus_phage	1.2e-51	40.5
WP_005650594.1\|1374975_1375464_+	non-heme ferritin	NA	NA	NA	NA
WP_005656740.1\|1375479_1375977_+	non-heme ferritin	NA	NA	NA	NA
WP_005688459.1\|1376205_1376970_+	glycosyltransferase	A7IW34	Paramecium_bursaria_Chlorella_virus	1.5e-14	29.1
WP_042594028.1\|1377075_1378632_+	anthranilate synthase component I	A0A0B5J984	Pandoravirus	3.1e-22	32.8
WP_042603067.1\|1378644_1379226_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.5e-35	39.4
WP_005666933.1\|1379274_1379661_+	tautomerase family protein	NA	NA	NA	NA
WP_042594026.1\|1379713_1380715_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.8e-47	35.3
WP_042594055.1\|1380755_1382186_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.2e-33	38.0
WP_042594025.1\|1382315_1382588_+	hydrogenase maturation factor HybG	NA	NA	NA	NA
WP_042594024.1\|1382621_1385486_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.0e-148	37.4

DBSCAN-SWA_3

1394862 : 1426521

Haemophilus_phage(22.58%)

integrase,terminase,capsid

attL 1416937:1416953|attR 1432730:1432746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005650554.1\|1394862_1395039_-	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1
WP_075913359.1\|1395179_1396490_-\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	5.3e-108	78.3
WP_011272621.1\|1396389_1397724_-	DUF1073 domain-containing protein	Q7Y5U6	Haemophilus_phage	2.1e-213	84.2
WP_011272619.1\|1399055_1399568_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	1.0e-19	39.2
WP_005643377.1\|1399645_1399897_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
WP_042594017.1\|1399880_1400228_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.2e-22	56.1
WP_042594016.1\|1400229_1400511_-	hypothetical protein	Q776X1	Haemophilus_phage	8.8e-29	70.0
WP_042594015.1\|1400422_1400758_-	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	9.8e-19	52.1
WP_042594014.1\|1400730_1401273_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	3.1e-46	52.0
WP_005688862.1\|1401253_1401505_-	hypothetical protein	NA	NA	NA	NA
WP_005688860.1\|1401675_1401837_-	hypothetical protein	NA	NA	NA	NA
WP_005688858.1\|1401964_1402477_-	hypothetical protein	NA	NA	NA	NA
WP_005688856.1\|1402885_1403707_-	NYN domain-containing protein	A0A0R6PGY5	Moraxella_phage	3.1e-34	40.9
WP_042594013.1\|1403908_1404427_-	hypothetical protein	NA	NA	NA	NA
WP_042594012.1\|1404466_1404832_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_042594011.1\|1404833_1405421_-	recombination protein NinG	A0A2I7RAC0	Vibrio_phage	8.3e-37	48.0
WP_042594054.1\|1405513_1405930_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.9e-64	86.1
WP_005633909.1\|1405966_1406191_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_042599516.1\|1406187_1406811_-	replication P	D0UIL4	Aggregatibacter_phage	6.9e-34	42.2
WP_042593362.1\|1406825_1407602_-	replication protein	D0UIL5	Aggregatibacter_phage	1.3e-26	62.6
WP_042593361.1\|1407603_1407846_-	hypothetical protein	M4NJW2	Sulfitobacter_phage	4.0e-06	41.4
WP_005662003.1\|1408446_1408674_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	1.5e-10	50.8
WP_042593359.1\|1408808_1409714_+	helix-turn-helix transcriptional regulator	B6SCU0	Bacteriophage	6.8e-38	40.8
WP_042593358.1\|1409729_1410824_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	2.0e-60	36.2
WP_042593357.1\|1410823_1411483_+	hypothetical protein	NA	NA	NA	NA
WP_005662013.1\|1411439_1412471_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	2.8e-128	66.4
WP_158672356.1\|1413146_1413317_+	hypothetical protein	NA	NA	NA	NA
WP_042593356.1\|1413481_1414312_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	3.4e-76	52.2
WP_042593355.1\|1414816_1415434_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	4.0e-18	46.4
WP_042599368.1\|1415523_1415874_+	hypothetical protein	NA	NA	NA	NA
WP_042593270.1\|1415870_1416164_+	hypothetical protein	NA	NA	NA	NA
WP_042593269.1\|1416175_1417087_+	recombinase RecT	A0A0M3LNU3	Mannheimia_phage	2.4e-115	70.7
1416937:1416953	attL	NA	NA	NA	NA
WP_080317036.1\|1417431_1418043_+	Bro-N domain-containing protein	Q7Y5X0	Haemophilus_phage	5.8e-33	60.6
WP_042602780.1\|1418253_1418898_+	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	6.8e-85	71.4
WP_042602779.1\|1418897_1419332_+	single-stranded DNA-binding protein	A0A059WRL7	Vibrio_phage	1.3e-18	36.2
WP_111738709.1\|1419394_1420687_+	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	8.8e-07	61.9
WP_038440649.1\|1420811_1421708_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	8.4e-57	43.7
WP_005668254.1\|1421704_1421950_+	hypothetical protein	NA	NA	NA	NA
WP_042593417.1\|1421946_1422306_+	hypothetical protein	NA	NA	NA	NA
WP_005668260.1\|1423103_1423751_+	hypothetical protein	A0A0M3LNU4	Mannheimia_phage	1.0e-08	40.0
WP_042593416.1\|1423754_1424171_+	hypothetical protein	W0B4E9	Acinetobacter_phage	3.5e-05	39.2
WP_042593415.1\|1424250_1424739_+	hypothetical protein	NA	NA	NA	NA
WP_042593414.1\|1424728_1425052_+	hypothetical protein	NA	NA	NA	NA
WP_042593413.1\|1425044_1425317_+	hypothetical protein	NA	NA	NA	NA
WP_005650488.1\|1425358_1425562_+	hypothetical protein	NA	NA	NA	NA
WP_105873124.1\|1425633_1426521_-\|integrase	site-specific integrase	A0A0M3LQN1	Mannheimia_phage	8.0e-84	54.2
1432730:1432746	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1664198 : 1672707

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011272434.1\|1664198_1664882_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7
WP_011272433.1\|1664874_1665300_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	2.3e-20	42.0
WP_005686506.1\|1665300_1665936_+	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	8.7e-16	30.3
WP_042593871.1\|1666545_1668726_+	DNA helicase II	A7KV33	Bacillus_phage	3.9e-116	37.7
WP_005647473.1\|1668815_1669817_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005653671.1\|1669831_1670719_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005694258.1\|1670728_1671721_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-14	30.8
WP_038441344.1\|1671723_1672707_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-20	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483438

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection