CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483443	Aggregatibacter segnis ATCC 33393 strain NCTC 10977 chromosome 1	3 crisprs	csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3,DEDDh,DinG,csa3	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483443_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483443_1

276173-276708

TypeIII

Consensus_repeat	Method
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC	PILER-CR
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	CRISPRCasFinder
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	CRT

7 spacers

csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1

The CRISPR arrays of NZ_LS483443_1

>merge|NZ_LS483443|1|276173-276708|PILER-CR,CRISPRCasFinder,CRT
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAACAAAGGATATTTGATGAATATAAGAGACTTGAATGGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAACAGCGAATAAAATTCATCGCCATTATACTCGTGGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAACCCAGACGGTTCTTGAAAAGCTTCACACGCAGGATGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAACATTTGCCGCTCTTTTAAATTGACTTGCGTCTCGTGGTCGAAAGACCCCGCCCTGTTCTAAAGGGATTGAAAGTACAGCGCACCGTTTTTGTAAACACGGATGTCATATGTCGAAAGACCTCGCCCTGCTCCAAAGGGATTGAAACTCTGGGTGGTATTTGATTGCCATTCTTTTATATGTCGAAAGACACCGCCCTGTTCCAAAGGGATTGAAACTAAGCTACTTGTTCAGTAGTGATGTTTTAACACACAGTCGAAAGACCCCGCCCTGCTCCAAAGGGATTGAAAC

>NZ_LS483443|1|1|276173-276708|PILER-CR
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC	AAAGGATATTTGATGAATATAAGAGACTTGAATG
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC	AGCGAATAAAATTCATCGCCATTATACTCGTG
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC	CCAGACGGTTCTTGAAAAGCTTCACACGCAGGAT
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC	ATTTGCCGCTCTTTTAAATTGACTTGCGTCTCGTG
GTCGAAAGACCCCGCCCTGTTCTAAAGGGATTGAAAG	TACAGCGCACCGTTTTTGTAAACACGGATGTCATAT
GTCGAAAGACCTCGCCCTGCTCCAAAGGGATTGAAAC	TCTGGGTGGTATTTGATTGCCATTCTTTTATAT
GTCGAAAGACACCGCCCTGTTCCAAAGGGATTGAAAC	TAAGCTACTTGTTCAGTAGTGATGTTTTAACACACA
GTCGAAAGACCCCGCCCTGCTCCAAAGGGATTGAAAC

>NZ_LS483443|1|1|276173-276703|CRISPRCasFinder
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACAAAGGATATTTGATGAATATAAGAGACTTGAATG
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACAGCGAATAAAATTCATCGCCATTATACTCGTG
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACCCAGACGGTTCTTGAAAAGCTTCACACGCAGGAT
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACATTTGCCGCTCTTTTAAATTGACTTGCGTCTCGTG
GTCGAAAGACCCCGCCCTGTTCTAAAGGGATT	GAAAGTACAGCGCACCGTTTTTGTAAACACGGATGTCATAT
GTCGAAAGACCTCGCCCTGCTCCAAAGGGATT	GAAACTCTGGGTGGTATTTGATTGCCATTCTTTTATAT
GTCGAAAGACACCGCCCTGTTCCAAAGGGATT	GAAACTAAGCTACTTGTTCAGTAGTGATGTTTTAACACACA
GTCGAAAGACCCCGCCCTGCTCCAAAGGGATT

>NZ_LS483443|1|1|276173-276703|CRT
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACAAAGGATATTTGATGAATATAAGAGACTTGAATG
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACAGCGAATAAAATTCATCGCCATTATACTCGTG
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACCCAGACGGTTCTTGAAAAGCTTCACACGCAGGAT
GTCGAAAGACCCCGCCCTGTTCCAAAGGGATT	AAAACATTTGCCGCTCTTTTAAATTGACTTGCGTCTCGTG
GTCGAAAGACCCCGCCCTGTTCTAAAGGGATT	GAAAGTACAGCGCACCGTTTTTGTAAACACGGATGTCATAT
GTCGAAAGACCTCGCCCTGCTCCAAAGGGATT	GAAACTCTGGGTGGTATTTGATTGCCATTCTTTTATAT
GTCGAAAGACACCGCCCTGTTCCAAAGGGATT	GAAACTAAGCTACTTGTTCAGTAGTGATGTTTTAACACACA
GTCGAAAGACCCCGCCCTGCTCCAAAGGGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483443.1\|WP_032998013.1\|284553_285054_-\|lipoprotein	unknown	unknown	gnl\|CDD\|374773
NZ_LS483443.1\|WP_032998011.1\|267492_267879_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_LS483443.1\|WP_032998010.1\|264441_265056_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_LS483443.1\|WP_006719554.1\|267889_268594_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_LS483443.1\|WP_006719572.1\|286278_286917_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_LS483443.1\|WP_006719560.1\|273588_274743_+\|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	gnl\|CDD\|187872
NZ_LS483443.1\|WP_006719565.1\|278423_279278_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006719568.1\|280669_280957_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_LS483443.1\|WP_006719567.1\|279586_280657_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_LS483443.1\|WP_006719557.1\|271163_272087_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_LS483443.1\|WP_006719555.1\|268603_269542_+\|CRISPR-associated-protein-Csm4	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|273866
NZ_LS483443.1\|WP_006719559.1\|272446_273589_+\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
NZ_LS483443.1\|WP_006719569.1\|281883_284454_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_LS483443.1\|WP_006719573.1\|286952_287768_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319819
NZ_LS483443.1\|WP_006719564.1\|277975_278335_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006719566.1\|279293_279578_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_LS483443.1\|WP_006719571.1\|285238_286279_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_LS483443.1\|WP_006719552.1\|265282_267487_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_LS483443.1\|WP_006719558.1\|272147_272438_+\|CRISPR-associated-protein-Csx16	csx16	cd09695_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
NZ_LS483443.1\|WP_006719556.1\|269538_271167_+\|CRISPR-associated-protein	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|224251

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LS483443.1\|WP_032998011.1\|267492_267879_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	4.3e-17	57.6	1.4
NZ_LS483443.1\|WP_006719554.1\|267889_268594_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	3.4e-70	230.9	0.2
NZ_LS483443.1\|WP_006719560.1\|273588_274743_+\|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	3.1e-83	273.6	0.0
NZ_LS483443.1\|WP_006719568.1\|280669_280957_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	5.6e-19	63.0	0.0
NZ_LS483443.1\|WP_006719567.1\|279586_280657_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	9.1e-76	249.6	0.0
NZ_LS483443.1\|WP_006719557.1\|271163_272087_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	4.7e-101	332.9	0.0
NZ_LS483443.1\|WP_006719555.1\|268603_269542_+\|CRISPR-associated-protein-Csm4	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	8e-115	378.2	0.1
NZ_LS483443.1\|WP_006719559.1\|272446_273589_+\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	9.6e-128	420.7	11.1
NZ_LS483443.1\|WP_006719566.1\|279293_279578_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	5.3e-17	56.7	0.1
NZ_LS483443.1\|WP_006719552.1\|265282_267487_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	7.5e-112	369.6	1.5
NZ_LS483443.1\|WP_006719558.1\|272147_272438_+\|CRISPR-associated-protein-Csx16	csx16	cd09695_csx16_CAS-I:CAS-III	8.1e-31	100.8	0.0
NZ_LS483443.1\|WP_006719556.1\|269538_271167_+\|CRISPR-associated-protein	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	2.8e-18	60.8	19.3

Protein	Function_ID	Function_description	E-value
NZ_LS483443.1\|WP_032998013.1\|284553_285054_-\|lipoprotein	gnl\|CDD\|374773	pfam16747, Adhesin_E, Surface-adhesin protein E. Adhesin E plays a role in pathogenesis. It binds to host proteins including plasminogen, vitronectin and laminin.	2.628e-68
NZ_LS483443.1\|WP_032998011.1\|267492_267879_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.53141e-15
NZ_LS483443.1\|WP_032998010.1\|264441_265056_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	6.61763e-23
NZ_LS483443.1\|WP_006719554.1\|267889_268594_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.19956e-74
NZ_LS483443.1\|WP_006719560.1\|273588_274743_+\|TIGR02584-family-CRISPR-associated-protein	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	4.26247e-94
NZ_LS483443.1\|WP_006719569.1\|281883_284454_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_LS483443.1\|WP_006719568.1\|280669_280957_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	5.57358e-16
NZ_LS483443.1\|WP_006719567.1\|279586_280657_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.64137e-92
NZ_LS483443.1\|WP_006719557.1\|271163_272087_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	3.5841e-08
NZ_LS483443.1\|WP_006719555.1\|268603_269542_+\|CRISPR-associated-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	2.75795e-08
NZ_LS483443.1\|WP_006719559.1\|272446_273589_+\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	2.77445e-134
NZ_LS483443.1\|WP_006719572.1\|286278_286917_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.68351e-112
NZ_LS483443.1\|WP_006719573.1\|286952_287768_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319819	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily. Bacteroides thetaiotaomicron VPI-5482 BT4131 is a phosphatase with preference for hexose phosphates. In addition this family includes uncharacterized Bacillus subtilis YkrA, a putative phosphatase and uncharacterized Streptococcus pyogenes MGAS10394 a putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.93381e-74
NZ_LS483443.1\|WP_006719566.1\|279293_279578_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.71647e-11
NZ_LS483443.1\|WP_006719571.1\|285238_286279_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_LS483443.1\|WP_006719552.1\|265282_267487_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.59627e-107
NZ_LS483443.1\|WP_006719558.1\|272147_272438_+\|CRISPR-associated-protein-Csx16	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	9.7515e-42
NZ_LS483443.1\|WP_006719556.1\|269538_271167_+\|CRISPR-associated-protein	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.3179e-05

>NZ_LS483443.1|WP_006719560.1|273588_274743_+|TIGR02584-family-CRISPR-associated-protein
MKTYNKRILLSVTGKSPAVVTETLYALVTEKNFIPTEIQVITTIEGRNELLSALLGIEGKRKGALQEFIEDYGSQYGFDHIHFNEDCVHIIKDTNGEQLPDIRTPKENEQAANSIVQLVGKLCQDDETQLHVSIAGGRKTMGFFMGYALSLYGREQDSLSHVLVDEEFETLSNFYYRKPKEYRIVNDRNGKELDASQANIMLAEIPWVRLGLGVPEDLKQQAISYSDSVKNAQALLEAPSLTFLSPIEDCLVTFGSKTIKLAPRGYALFLSLVIAKKQGWNVGTGNREEARTIATYLNIYSQMKNDVEMENRLKGANNDLKNVLSESRTDINKKVMASFSLGKGAKSAYIPSSNRKTGNYELNIHLDNIDVSKIESDLKRLKLI
>NZ_LS483443.1|WP_006719559.1|272446_273589_+|DUF1887-family-protein
MQKYDIHVCLVSDQAAPNLLPILDSEFKPQKAVFVVSTKDEIKEKANSLKLAFKQNDIDVDILELSNEFDFQSMETELFDLLSSYENENIALNVTGGTKLMAIAAQNVFSGVKPIFYINTNKEEIIFISKENDKHIPVQKLNTKTLINTYLSSYGVSVLKNKDDFNFYKLGVFTERFVRRQEDYKDIISKLNLLAFNASNSKLETNFTNYSNDLKLILEDLADEDLVRLNGDIVDFKNEQTRSFLNGNWLEYFTYKQANSIADVIDADWNVEVVNSKYEKNKVGVNNELDVIFMAKNKCHIIECKTINFENTENKDKLQSYLDKLNSLKGYGGSLTKVCLVSFYAIPQNIKRRAEKDNIEIIDDYRIKNLKERIQSWIKK
>NZ_LS483443.1|WP_006719558.1|272147_272438_+|CRISPR-associated-protein-Csx16
MTTWFISRHPGAIEWVKQQNIQINRFESHLDTSLVQANDVVIGTLPIHLAAEVCQKGAKFYFLSINVTPEQRGIELTCKQLTEQQCSIQPFRIEKL
>NZ_LS483443.1|WP_006719557.1|271163_272087_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIPNSFPIARYQFDFVVSEPILLPEYSGSTLRGAFGRALRKISCMTKQEDCKGCPLYRTCPYTNIFETPAPTEHELQKFSQVPNGYIIEPPAWGERLYAEGETLTFSLVLFGRLIEQLPLIAFAFKRAFEYNVGRGKANLLDIAKVESNLTTRQSILQNGNIIEHQKTIEIPTALDSVAQIKIDTPLRLQENGKPLRVNEITAERFFISLAKRLSLLSEFHSEPLNLDFGLLKNQIEQIQDNKHLKWQDWTRYSSRQDHKMKLGGVIGLWQFNNLSPELAKLLYIGQWLHCGKNATFGLGKYRITNL
>NZ_LS483443.1|WP_006719556.1|269538_271167_+|CRISPR-associated-protein
MKPFIQIHNVYLTPLSPIHIGCGEDFEPTNYVIDNETLFNFEPSHLMLNERERTNLLNAVNKDILAIHNFFSSNKSKIIPLSQYFSAITKGFVSEYNKNIENPAHKEKNGNKVFNQLQIERTAYLPYQGLAFIPGSSFKGAFTTPVLSKRHIDNGGNPLIKREKKTSKTALSLISQKINEDYLYNINNLKSFDEVKENFAHNEFRSIKFSDFSPLNNVQTKIFYCLNFNRELKNGEKTFNTKIVQRRESILPGQYRAFSANLSILDDKVNKLLSLNEYLTINDSYYKKIFIEEMEDLVAKGFVSQNYLNGILNIINKAGFLIRLGKNGSDSKVLKGKNVAQIEIKPKKNQEVYYQDKATTYWLSADSKTQKNNLLPFGWALIEVDPTTENEALKTWCEAQPKSKFDRSEILAKREAQKAEQARLQAEAEAKRLAEQQAEKEKLALLDSLSDNQRLVEAKLVEWNSQERKPFTVSPIFSEAKKLLEDAQQWNKEDRHYLYEKLDPTKSNEGLQKYVDGLSGFSNLKAKSAVEFKKLRNKLVAE
>NZ_LS483443.1|WP_006719555.1|268603_269542_+|CRISPR-associated-protein-Csm4
MKLYRFTLTPQSAMGTPLVGDTLFGQLCWAVRNRFGEARLSELLKGYTTQRPFMVVSDAFPESFLPLPTLPSTFWETKTETDRKSLKKAQWVKITDTEKSAVKFWQECALQANFQFKKETQDQFHNTIDRQTNTTGDGQFAPYSTELTWFGAQQKFELYVVLDENRFSLEALQIVLQDVGNIGFGRDASIGLGKFRCENPQAFDFAQPNANCYLTLANCAPQGLGLNKEYCYYQITTRFGRHGDIQALSSNPFKKPIILAKPAAIFTPENYQPRLFLGNGLGNVSYAQPEAVHQSYAPVLNLFVDFEHKDHK
>NZ_LS483443.1|WP_006719554.1|267889_268594_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MKLNKIIEIKAKLVLQTGLHIGSGNSEMQIGGIDSQVVRNPITREPYIPGSSLKGKIRTLLEWLSGEVKNEPLSLGNIKDIHNKETVKDILRLFGFAGHSENNKELCVELKASRLSFWDCSLSKKWKNEYSEDGFIITETKSENTIDRITSVTTGGGVRQTERVPAGAEFDFKLMLRQFEGDKPELLDLVLKGLKLLELDSLGGSGSRGYGKVKFTELTVDGEARNLDDIKPFE
>NZ_LS483443.1|WP_032998011.1|267492_267879_+|type-III-A-CRISPR-associated-protein-Csm2
MMDLSKIKFPAEAGSGIFDSVAENAAKEIRDSKVNKKTQIRKFYDELIMWNERVQHSKISKEEKYIELEPFIKMLKAKVTYAKGRGHIDEKFQSIFNHCIDQIKDAKTLQHAKLFMEAVTGYSRELEK
>NZ_LS483443.1|WP_006719552.1|265282_267487_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MSDHTISLAFSVLHHYLKLFAEKQEPHLPLPSFPSQFKQVDISPFLSQAEHLVLGKQPELKESNKLFSLFENINQENKKTQFSYDFQPLSPNTIFPKKEENNTALSTHWDKFVQAIAKIPKSHCDNPSLWLDHFDTAMQCFTCNLPSPYSDDISFYDFTKAVAAFVVALADQEINKEEPFLLIQGDFFGIQDFIFSGGSASNKGAAKILRGRSFQVSLFTELAALKVLNACQLPTTSQMMNAAGKFLIVAPNTKAVKEAIKQVQAELNQWFIKETYGLIGLGIAVQSAKYSDFEQNHYETLVKKLFENLEEQKLKRLDLTDTTQSVQEVEYPNGVCEMNSFFPSQKEEDCPTIDGKKVNYSVISEDQINIGKWLSKKDRIIITDNESKIHSDSDTKILKLPIFGFNVIFTEEEEETGKFGLHVHKIHRFWDFSLPKNTNSTIWNGYARRYINAYVPFDDEGKIVTFEDIQARDEGQKALMTLKGDVDNLGTIFQKGIQPANIAKMAALSRQMNQFFSLWLPAYCSEQSQNMYTVFAGGDDFFLIGPWYSTQKVAHAMQQAFAHYVAENPEIHFSVGMVMSKSNIPVPRLGDLAEEALEKAKGIDKGKTVSTAEGKNAVTIFNRSVKWADWKQLCGLEEEIHRLADTYKISTSYLYSLIRLCEQAANTENIESTMWRSRFYYKTVRYVLDKIKREEDRKDALKVLSETLGKNGIELYKINFSIPLFNYFYKKRNI
>NZ_LS483443.1|WP_032998010.1|264441_265056_-|helix-hairpin-helix-domain-containing-protein
MKSLKSLLALAVAIAVSSTALAEESVLSEVKEGAKSAWQTVKEDSKVAGTKIKNGAVKVKETTKEKFGEAKDATKEKFSEAKDATKEKLTEAKEVTQEKVAEGKKAIKDKLRNDKPAQVEDKSTAKEKSAVENKAQMTQGKKVDVNTADVAALESLSGIGEAKAKAIIEYREKNGKFKNLSDLSKVPGIGDATLEKMKSHVRFN
>NZ_LS483443.1|WP_006719564.1|277975_278335_+|hypothetical-protein
MLNLRMHHKATQVIFNPSYAESEINAIAAGFVEVRDERAYNGRYFIKNGKKWIHNLEALRKKLNTKYGRYIDDEELSSPAPEGFGYDIKTYYLYNSTSSTHNEFSTRFRTILEKVCIKH
>NZ_LS483443.1|WP_006719565.1|278423_279278_+|hypothetical-protein
MFYITKHNYYKNIICKLDIDIPTIEKTGFFSSYKLDLFDLDLSYFAKNEREMLIISDHLFRNISNINKNVIFKQIKHKENNWVYKLSVPAYHADRHCPNLTKEFNNIRIPYSLEPSLCKEYRQFFIDNKDRYGNKAGLIEPKVFARKLKEKFNLSEELDELLENHILPEIRENSGVECVNITVEQLIDEINELIDIFKNFIKKEQISGLLSRRSWLSTKDDSELSETERESMQKVYEQKRRICARILAFHFQHFEKEGFNISENLLEMLGFQACPNCCKHIIPF
>NZ_LS483443.1|WP_006719566.1|279293_279578_+|CRISPR-associated-endonuclease-Cas2
MDTRRSRYLIAYDIADSHRLYQMHKHVEAYAIGGQKSFYECWLTEHEMIAFQQDVNALIDASDDRVFIFRIPNNIEPLLFGKATLQSNSPFLLV
>NZ_LS483443.1|WP_006719567.1|279586_280657_+|CRISPR-associated-endonuclease-Cas1
MSSLYIDRKGTEIKLNGEALVCYENGERVGTIPLAPIERIYLKSYVTVQASLLAKLGEKGIGIIFLSGRKNTPTLFLAQPHNDATRRLNQYELAKNESFCLAFAKKLMQLKLVTQKNWLWQASNARADKKSQLAEKAGELDQLIGKINEQTTLASLRGIEGRAASVYFTALSLYLPPALRFQGRNRRPPRDPFNAGLSLTYTLIHSEAVLAAYGAGLDPYIGFYHALDFGRESLACDLIEPLRPLIDNWCLGLFRQNILREESFSTTQEGCFLGKAGRVEFYKSYESAVGNWRKMLTENSLDIVNLIKQADFISSPQRRESEWQTFSGINERQWQGLLGRYYFNQQTMLQDVIFQF
>NZ_LS483443.1|WP_006719568.1|280669_280957_+|CRISPR-associated-endonuclease-Cas2
MQYLIGYDIADPKRLQRIHRRMTKYATPIQYSIFLFEGSEKLLTQCLTEVMQIFHKKEDDLRIYPLPHKCSQWRLGKASLPQGIIWTALPISLTL
>NZ_LS483443.1|WP_006719569.1|281883_284454_+|ATP-dependent-chaperone-ClpB
MNIEKFTTKFQQAIAEAQSLAIGKDNQFIEPVHLLSALLNQQDGSVAPILTASGVNVAALRNELNNELAKLPQVSGNGGDVQLSRQLLNLLNLCDKLAQQRQDKFISSELFLLAALEEKGAVSEILKKCGAKKDQILQAIDHIRGGQNVNDQNAEESRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLKELAQEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVGEPSVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSIRMEIDSKPQPLDRLDRRIIQLKLEQQALQKEDDDASRKRLEMLEKELSEKEREYAELEEVWKSEKAALSGTQHIKAELENARTQMEQARRAGDLSKMSELQYGKIPELEKQLAAAEGAEGKEMSLLRYRVTDEEIAEVLSRATGIPVSKMMEGEKEKLLRMEEELHKRVIGQNEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQGNQEESYDDMKTLVMSVVSQHFRPEFINRIDETVVFHPLNKDNIRAIAEIQLKRLINRMESRGYVLHFTDATLNFISEIGYDPIYGARPLKRAIQQEIENPLAQQILSGSLLPEKPISVDYVDGKIVAKQ
>NZ_LS483443.1|WP_032998013.1|284553_285054_-|lipoprotein
MKKTFVFLTALLLAACSSSPSTKPALNSQVNAKAQGDVPLVPPKETKNGFLQLVPGIFYYVDTNSVWVDNKDKRLIHFDVVINLDKGLYVFKDHPTLYAKSMRQYKILNCESHYFTHVRSDFYADFWGDGIRTAPKRQSQHTIALQPQSSLYTLGQVMCANMYRRK
>NZ_LS483443.1|WP_006719571.1|285238_286279_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSTQSLSYKDAGVDIHAGNELVERIKPEVKRTTRPEVMGGLGGFGALCAIPSKYKEPILVSGTDGVGTKLRLAIDLNRHDSIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDVAANVIKGIANGCEQSGCALVGGETAEMPGMYHEGDYDLAGFCVGVVEKSEIIDGSQVKVGDALIALASSGPHSNGYSLIRKVIDVAGVNPAEAQLEGSPLADHVLAPTKIYVKSILQLIKHVNVHAIAHLTGGGFWENIPRVLPNSVKAVINENSWQWPAVFDWLQQQGNITDYEMYRTFNCGVGMVIALPQEDVETALGLLQQAGENAWVVGDIQHLADENEPQVVIR
>NZ_LS483443.1|WP_006719572.1|286278_286917_+|phosphoribosylglycinamide-formyltransferase
MKKIVVLISGYGANLQAIIDACESRYIDGEVVGVFSNRADAFGLQRAKSAGIFHRTFLRSDYADNLAMDRHIADEIDNLGADLIVLAGYMKILTAEFTQRFAGKILNIHPSLLPKYPGLHTYQRAIEAGETEHGMTIHFVNEEVDGGAIVLQAKVPIFAEDDIADIEQRVKEQEIRFYPLAIKWFAEGRLRLIDNHAYLDGNRLPPQGYAID
>NZ_LS483443.1|WP_006719573.1|286952_287768_-|Cof-type-HAD-IIB-family-hydrolase
MSIPNYRDQIKVVFFDIDDTLFMKQRDFLPATVPVFMRKLKENGIIPAIATGRTRCAFPHKLNQVIEQEGIDLFVTMNGQMASYRGQVIEKHVIPTEKIRRLVHFFEQHNMPYAFVADHTVAVSERNSVVQFAMDPILKDYIVDKTFFETNDIGQVLPFYRAEHDELVQNSGVLDGLRVVRWHEDSVDLFDAEGSKARGIQAVVKHLGLQMDNVMAFGDQLNDLEMLSTVGVGVAMGNGNEKLKAIADHVAEPLDQDGIYRFLIKAGLINE

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Crispr_ID: NZ_LS483443_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483443_2

281174-281707

TypeIII

Consensus_repeat	Method
CAGTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACTTCTC	PILER-CR
GTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACT	CRISPRCasFinder
GCCCTGNTCCAAAGGGATTNANACT	CRT
GTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACT	CRISPRCasFinder

7 spacers

cas2,cas1,csx1,csx16,cas6,csm5gr7

The CRISPR arrays of NZ_LS483443_2

>merge|NZ_LS483443|2|281174-281707|PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder
CAGTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACTACTCAAGCTTCTCGAGTCTAGCAGGTTCACCGTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACTTCTCCTTTAATTTCGCTTCGATTTCAGAAATCAGTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACTTGTAAAGTGCTAAATAAACCTTATCCATTATTGTGTCGAAAGACACCGCCCTGTTCGAAAGGGATTAAGACTTATCACCGCTTTGCCGGCTATCAAGCATTTGCAGTCGAAAGACACCGCCCTGTTCCAAAGGGATTGAAACGAATATGGGATATTGATATTAATTTCGTTCATTTGTCGAAAGCCCCGCCCTGCTCCAAAGGGATTGAAATGCGTTTAATGGGCGCTAAAATACGATTTAAACCTGTCGAAAGACCTCACCCTGCTCCAAAGGGATTGAAACTCTGGGTGGTATTTGATTGCCATTCTTTTATATGTCGAAAGACCCCGCCCTGCTCCAAAGGGATTCTCCAT

>NZ_LS483443|2|2|281174-281354|PILER-CR
CAGTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACTACTC	AAGCTTCTCGAGTCTAGCAGGTTCA
CCGTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACTTCTC	CTTTAATTTCGCTTCGATTTCAGAAAT
CAGTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACTT

>NZ_LS483443|2|2|281176-281497|CRISPRCasFinder
GTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACT	ACTCAAGCTTCTCGAGTCTAGCAGGTTCACC
GTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACT	TCTCCTTTAATTTCGCTTCGATTTCAGAAATCA
GTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACT	TGTAAAGTGCTAAATAAACCTTATCCATTATTGT
GTCGAAAGACACCGCCCTGTTCGAAAGGGATTAAGACT	TATCACCGCTTTGCCGGCTATCAAGCATTTGCA
GTCGAAAGACACCGCCCTGTTCCAAAGGGATTGAAACGAATATGGGATATTGATATTAATTTCGTTCATTTGTCGAAAGCCCCGCCCTGCTCCAAAGGGATTGAAATGCGTTTAATGGGCGCTAAAATACGATTTAAACCTGTCGAAAGACCTCACCCTGCTCCAAAGGGATTGAAACT	CTGGGTGGTATTTGATTGCCATTCTTTTATAT


>NZ_LS483443|2|2|281189-281707|CRT
GCCCTGTTCCAAAGGGATTAAGACT	ACTCAAGCTTCTCGAGTCTAGCAGGTTCACCGTCGAAAGACCTT
GCCCTGTTCCAAAGGGATTAAGACT	TCTCCTTTAATTTCGCTTCGATTTCAGAAATCAGTCGAAAGACCTT
GCCCTGTTCCAAAGGGATTAAGACT	TGTAAAGTGCTAAATAAACCTTATCCATTATTGTGTCGAAAGACACC
GCCCTGTTCGAAAGGGATTAAGACT	TATCACCGCTTTGCCGGCTATCAAGCATTTGCAGTCGAAAGACACC
GCCCTGTTCCAAAGGGATTGAAACG	AATATGGGATATTGATATTAATTTCGTTCATTTGTCGAAAGCCCC
GCCCTGCTCCAAAGGGATTGAAATG	CGTTTAATGGGCGCTAAAATACGATTTAAACCTGTCGAAAGACCTC
ACCCTGCTCCAAAGGGATTGAAACT	CTGGGTGGTATTTGATTGCCATTCTTTTATATGTCGAAAGACCCC
GCCCTGCTCCAAAGGGATTCTCCAT

>NZ_LS483443|2|3|281600-281707|CRISPRCasFinder
	ACTCAAGCTTCTCGAGTCTAGCAGGTTCACC
GTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACT	TCTCCTTTAATTTCGCTTCGATTTCAGAAATCA
GTCGAAAGACCTTGCCCTGTTCCAAAGGGATTAAGACT	TGTAAAGTGCTAAATAAACCTTATCCATTATTGT
GTCGAAAGACACCGCCCTGTTCGAAAGGGATTAAGACT	TATCACCGCTTTGCCGGCTATCAAGCATTTGCA
GTCGAAAGACACCGCCCTGTTCCAAAGGGATTGAAACGAATATGGGATATTGATATTAATTTCGTTCATTTGTCGAAAGCCCCGCCCTGCTCCAAAGGGATTGAAATGCGTTTAATGGGCGCTAAAATACGATTTAAACCTGTCGAAAGACCTCACCCTGCTCCAAAGGGATTGAAACT	CTGGGTGGTATTTGATTGCCATTCTTTTATAT
GTCGAAAGACCCCGCCCTGCTCCAAAGGGATTCTCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483443.1\|WP_032998013.1\|284553_285054_-\|lipoprotein	unknown	unknown	gnl\|CDD\|374773
NZ_LS483443.1\|WP_006719579.1\|292818_293481_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|179586
NZ_LS483443.1\|WP_006719565.1\|278423_279278_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006719576.1\|288719_289304_+\|Fe-S-biogenesis-protein-NfuA	unknown	unknown	gnl\|CDD\|183027
NZ_LS483443.1\|WP_006719560.1\|273588_274743_+\|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	gnl\|CDD\|187872
NZ_LS483443.1\|WP_006719569.1\|281883_284454_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_LS483443.1\|WP_006719571.1\|285238_286279_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_LS483443.1\|WP_006719567.1\|279586_280657_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_LS483443.1\|WP_006719557.1\|271163_272087_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_LS483443.1\|WP_006719568.1\|280669_280957_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_LS483443.1\|WP_006719559.1\|272446_273589_+\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
NZ_LS483443.1\|WP_032998016.1\|287923_288610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183221
NZ_LS483443.1\|WP_006719572.1\|286278_286917_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_LS483443.1\|WP_006719578.1\|290881_292516_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_LS483443.1\|WP_006719573.1\|286952_287768_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319819
NZ_LS483443.1\|WP_006719564.1\|277975_278335_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006719566.1\|279293_279578_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_LS483443.1\|WP_032998207.1\|289353_290652_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_LS483443.1\|WP_006719558.1\|272147_272438_+\|CRISPR-associated-protein-Csx16	csx16	cd09695_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
NZ_LS483443.1\|WP_006719556.1\|269538_271167_+\|CRISPR-associated-protein	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|224251

Protein	Function_ID	Function_description	E-value
NZ_LS483443.1\|WP_032998013.1\|284553_285054_-\|lipoprotein	gnl\|CDD\|374773	pfam16747, Adhesin_E, Surface-adhesin protein E. Adhesin E plays a role in pathogenesis. It binds to host proteins including plasminogen, vitronectin and laminin.	2.628e-68
NZ_LS483443.1\|WP_006719579.1\|292818_293481_+\|thiamine-phosphate-synthase	gnl\|CDD\|179586	PRK03512, PRK03512, thiamine phosphate synthase.	9.1729e-117
NZ_LS483443.1\|WP_006719576.1\|288719_289304_+\|Fe-S-biogenesis-protein-NfuA	gnl\|CDD\|183027	PRK11190, PRK11190, iron-sulfur cluster biogenesis protein NfuA.	2.65754e-152
NZ_LS483443.1\|WP_006719560.1\|273588_274743_+\|TIGR02584-family-CRISPR-associated-protein	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	4.26247e-94
NZ_LS483443.1\|WP_006719557.1\|271163_272087_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	3.5841e-08
NZ_LS483443.1\|WP_006719571.1\|285238_286279_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_LS483443.1\|WP_006719567.1\|279586_280657_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.64137e-92
NZ_LS483443.1\|WP_006719569.1\|281883_284454_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_LS483443.1\|WP_006719559.1\|272446_273589_+\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	2.77445e-134
NZ_LS483443.1\|WP_006719568.1\|280669_280957_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	5.57358e-16
NZ_LS483443.1\|WP_032998016.1\|287923_288610_+\|hypothetical-protein	gnl\|CDD\|183221	PRK11595, PRK11595, DNA utilization protein GntX; Provisional.	9.13696e-77
NZ_LS483443.1\|WP_006719572.1\|286278_286917_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.68351e-112
NZ_LS483443.1\|WP_006719573.1\|286952_287768_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319819	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily. Bacteroides thetaiotaomicron VPI-5482 BT4131 is a phosphatase with preference for hexose phosphates. In addition this family includes uncharacterized Bacillus subtilis YkrA, a putative phosphatase and uncharacterized Streptococcus pyogenes MGAS10394 a putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.93381e-74
NZ_LS483443.1\|WP_006719578.1\|290881_292516_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_LS483443.1\|WP_006719566.1\|279293_279578_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.71647e-11
NZ_LS483443.1\|WP_032998207.1\|289353_290652_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	6.44252e-151
NZ_LS483443.1\|WP_006719558.1\|272147_272438_+\|CRISPR-associated-protein-Csx16	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	9.7515e-42
NZ_LS483443.1\|WP_006719556.1\|269538_271167_+\|CRISPR-associated-protein	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.3179e-05

>NZ_LS483443.1|WP_006719568.1|280669_280957_+|CRISPR-associated-endonuclease-Cas2
MQYLIGYDIADPKRLQRIHRRMTKYATPIQYSIFLFEGSEKLLTQCLTEVMQIFHKKEDDLRIYPLPHKCSQWRLGKASLPQGIIWTALPISLTL
>NZ_LS483443.1|WP_006719567.1|279586_280657_+|CRISPR-associated-endonuclease-Cas1
MSSLYIDRKGTEIKLNGEALVCYENGERVGTIPLAPIERIYLKSYVTVQASLLAKLGEKGIGIIFLSGRKNTPTLFLAQPHNDATRRLNQYELAKNESFCLAFAKKLMQLKLVTQKNWLWQASNARADKKSQLAEKAGELDQLIGKINEQTTLASLRGIEGRAASVYFTALSLYLPPALRFQGRNRRPPRDPFNAGLSLTYTLIHSEAVLAAYGAGLDPYIGFYHALDFGRESLACDLIEPLRPLIDNWCLGLFRQNILREESFSTTQEGCFLGKAGRVEFYKSYESAVGNWRKMLTENSLDIVNLIKQADFISSPQRRESEWQTFSGINERQWQGLLGRYYFNQQTMLQDVIFQF
>NZ_LS483443.1|WP_006719566.1|279293_279578_+|CRISPR-associated-endonuclease-Cas2
MDTRRSRYLIAYDIADSHRLYQMHKHVEAYAIGGQKSFYECWLTEHEMIAFQQDVNALIDASDDRVFIFRIPNNIEPLLFGKATLQSNSPFLLV
>NZ_LS483443.1|WP_006719565.1|278423_279278_+|hypothetical-protein
MFYITKHNYYKNIICKLDIDIPTIEKTGFFSSYKLDLFDLDLSYFAKNEREMLIISDHLFRNISNINKNVIFKQIKHKENNWVYKLSVPAYHADRHCPNLTKEFNNIRIPYSLEPSLCKEYRQFFIDNKDRYGNKAGLIEPKVFARKLKEKFNLSEELDELLENHILPEIRENSGVECVNITVEQLIDEINELIDIFKNFIKKEQISGLLSRRSWLSTKDDSELSETERESMQKVYEQKRRICARILAFHFQHFEKEGFNISENLLEMLGFQACPNCCKHIIPF
>NZ_LS483443.1|WP_006719564.1|277975_278335_+|hypothetical-protein
MLNLRMHHKATQVIFNPSYAESEINAIAAGFVEVRDERAYNGRYFIKNGKKWIHNLEALRKKLNTKYGRYIDDEELSSPAPEGFGYDIKTYYLYNSTSSTHNEFSTRFRTILEKVCIKH
>NZ_LS483443.1|WP_006719560.1|273588_274743_+|TIGR02584-family-CRISPR-associated-protein
MKTYNKRILLSVTGKSPAVVTETLYALVTEKNFIPTEIQVITTIEGRNELLSALLGIEGKRKGALQEFIEDYGSQYGFDHIHFNEDCVHIIKDTNGEQLPDIRTPKENEQAANSIVQLVGKLCQDDETQLHVSIAGGRKTMGFFMGYALSLYGREQDSLSHVLVDEEFETLSNFYYRKPKEYRIVNDRNGKELDASQANIMLAEIPWVRLGLGVPEDLKQQAISYSDSVKNAQALLEAPSLTFLSPIEDCLVTFGSKTIKLAPRGYALFLSLVIAKKQGWNVGTGNREEARTIATYLNIYSQMKNDVEMENRLKGANNDLKNVLSESRTDINKKVMASFSLGKGAKSAYIPSSNRKTGNYELNIHLDNIDVSKIESDLKRLKLI
>NZ_LS483443.1|WP_006719559.1|272446_273589_+|DUF1887-family-protein
MQKYDIHVCLVSDQAAPNLLPILDSEFKPQKAVFVVSTKDEIKEKANSLKLAFKQNDIDVDILELSNEFDFQSMETELFDLLSSYENENIALNVTGGTKLMAIAAQNVFSGVKPIFYINTNKEEIIFISKENDKHIPVQKLNTKTLINTYLSSYGVSVLKNKDDFNFYKLGVFTERFVRRQEDYKDIISKLNLLAFNASNSKLETNFTNYSNDLKLILEDLADEDLVRLNGDIVDFKNEQTRSFLNGNWLEYFTYKQANSIADVIDADWNVEVVNSKYEKNKVGVNNELDVIFMAKNKCHIIECKTINFENTENKDKLQSYLDKLNSLKGYGGSLTKVCLVSFYAIPQNIKRRAEKDNIEIIDDYRIKNLKERIQSWIKK
>NZ_LS483443.1|WP_006719558.1|272147_272438_+|CRISPR-associated-protein-Csx16
MTTWFISRHPGAIEWVKQQNIQINRFESHLDTSLVQANDVVIGTLPIHLAAEVCQKGAKFYFLSINVTPEQRGIELTCKQLTEQQCSIQPFRIEKL
>NZ_LS483443.1|WP_006719557.1|271163_272087_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIPNSFPIARYQFDFVVSEPILLPEYSGSTLRGAFGRALRKISCMTKQEDCKGCPLYRTCPYTNIFETPAPTEHELQKFSQVPNGYIIEPPAWGERLYAEGETLTFSLVLFGRLIEQLPLIAFAFKRAFEYNVGRGKANLLDIAKVESNLTTRQSILQNGNIIEHQKTIEIPTALDSVAQIKIDTPLRLQENGKPLRVNEITAERFFISLAKRLSLLSEFHSEPLNLDFGLLKNQIEQIQDNKHLKWQDWTRYSSRQDHKMKLGGVIGLWQFNNLSPELAKLLYIGQWLHCGKNATFGLGKYRITNL
>NZ_LS483443.1|WP_006719556.1|269538_271167_+|CRISPR-associated-protein
MKPFIQIHNVYLTPLSPIHIGCGEDFEPTNYVIDNETLFNFEPSHLMLNERERTNLLNAVNKDILAIHNFFSSNKSKIIPLSQYFSAITKGFVSEYNKNIENPAHKEKNGNKVFNQLQIERTAYLPYQGLAFIPGSSFKGAFTTPVLSKRHIDNGGNPLIKREKKTSKTALSLISQKINEDYLYNINNLKSFDEVKENFAHNEFRSIKFSDFSPLNNVQTKIFYCLNFNRELKNGEKTFNTKIVQRRESILPGQYRAFSANLSILDDKVNKLLSLNEYLTINDSYYKKIFIEEMEDLVAKGFVSQNYLNGILNIINKAGFLIRLGKNGSDSKVLKGKNVAQIEIKPKKNQEVYYQDKATTYWLSADSKTQKNNLLPFGWALIEVDPTTENEALKTWCEAQPKSKFDRSEILAKREAQKAEQARLQAEAEAKRLAEQQAEKEKLALLDSLSDNQRLVEAKLVEWNSQERKPFTVSPIFSEAKKLLEDAQQWNKEDRHYLYEKLDPTKSNEGLQKYVDGLSGFSNLKAKSAVEFKKLRNKLVAE
>NZ_LS483443.1|WP_006719569.1|281883_284454_+|ATP-dependent-chaperone-ClpB
MNIEKFTTKFQQAIAEAQSLAIGKDNQFIEPVHLLSALLNQQDGSVAPILTASGVNVAALRNELNNELAKLPQVSGNGGDVQLSRQLLNLLNLCDKLAQQRQDKFISSELFLLAALEEKGAVSEILKKCGAKKDQILQAIDHIRGGQNVNDQNAEESRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLKELAQEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVGEPSVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSIRMEIDSKPQPLDRLDRRIIQLKLEQQALQKEDDDASRKRLEMLEKELSEKEREYAELEEVWKSEKAALSGTQHIKAELENARTQMEQARRAGDLSKMSELQYGKIPELEKQLAAAEGAEGKEMSLLRYRVTDEEIAEVLSRATGIPVSKMMEGEKEKLLRMEEELHKRVIGQNEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQGNQEESYDDMKTLVMSVVSQHFRPEFINRIDETVVFHPLNKDNIRAIAEIQLKRLINRMESRGYVLHFTDATLNFISEIGYDPIYGARPLKRAIQQEIENPLAQQILSGSLLPEKPISVDYVDGKIVAKQ
>NZ_LS483443.1|WP_032998013.1|284553_285054_-|lipoprotein
MKKTFVFLTALLLAACSSSPSTKPALNSQVNAKAQGDVPLVPPKETKNGFLQLVPGIFYYVDTNSVWVDNKDKRLIHFDVVINLDKGLYVFKDHPTLYAKSMRQYKILNCESHYFTHVRSDFYADFWGDGIRTAPKRQSQHTIALQPQSSLYTLGQVMCANMYRRK
>NZ_LS483443.1|WP_006719571.1|285238_286279_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSTQSLSYKDAGVDIHAGNELVERIKPEVKRTTRPEVMGGLGGFGALCAIPSKYKEPILVSGTDGVGTKLRLAIDLNRHDSIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDVAANVIKGIANGCEQSGCALVGGETAEMPGMYHEGDYDLAGFCVGVVEKSEIIDGSQVKVGDALIALASSGPHSNGYSLIRKVIDVAGVNPAEAQLEGSPLADHVLAPTKIYVKSILQLIKHVNVHAIAHLTGGGFWENIPRVLPNSVKAVINENSWQWPAVFDWLQQQGNITDYEMYRTFNCGVGMVIALPQEDVETALGLLQQAGENAWVVGDIQHLADENEPQVVIR
>NZ_LS483443.1|WP_006719572.1|286278_286917_+|phosphoribosylglycinamide-formyltransferase
MKKIVVLISGYGANLQAIIDACESRYIDGEVVGVFSNRADAFGLQRAKSAGIFHRTFLRSDYADNLAMDRHIADEIDNLGADLIVLAGYMKILTAEFTQRFAGKILNIHPSLLPKYPGLHTYQRAIEAGETEHGMTIHFVNEEVDGGAIVLQAKVPIFAEDDIADIEQRVKEQEIRFYPLAIKWFAEGRLRLIDNHAYLDGNRLPPQGYAID
>NZ_LS483443.1|WP_006719573.1|286952_287768_-|Cof-type-HAD-IIB-family-hydrolase
MSIPNYRDQIKVVFFDIDDTLFMKQRDFLPATVPVFMRKLKENGIIPAIATGRTRCAFPHKLNQVIEQEGIDLFVTMNGQMASYRGQVIEKHVIPTEKIRRLVHFFEQHNMPYAFVADHTVAVSERNSVVQFAMDPILKDYIVDKTFFETNDIGQVLPFYRAEHDELVQNSGVLDGLRVVRWHEDSVDLFDAEGSKARGIQAVVKHLGLQMDNVMAFGDQLNDLEMLSTVGVGVAMGNGNEKLKAIADHVAEPLDQDGIYRFLIKAGLINE
>NZ_LS483443.1|WP_032998016.1|287923_288610_+|hypothetical-protein
MNVFRSSCVHCHAPLKLAKHGLCSRCNRTIRRFPYCGCCGSELMENALHCGNCLQQEPAWDRMVIIGRYNEPLSTLIHRFKFQKQFQLDRTLARLLYLAIREARRNHQLPLPEVILPVPLHHVRQWQRGYNQADLLAHQLSSWLKIPAKNDLIIRAKRTPTQRGLSAKDRRQNLKNAFQLSAKARDFPYRHVALIDDVITTGATLNEIAKLLRKANVTHIQVWGLART
>NZ_LS483443.1|WP_006719576.1|288719_289304_+|Fe-S-biogenesis-protein-NfuA
MQQITISAEAQAHFRRLLDQQEEGTNIRIFVVNPGTPSAECGVSYCPPNSVEASDTEMKYDTFSAFVDDISLPFLEDAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLKDGVEKQLISLFPDELKGAKDVTEHQRGEHSYY
>NZ_LS483443.1|WP_032998207.1|289353_290652_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MFSRKDIVVLGMMIFALFLGAGNIIFPPMEGYTAGQHWATAALGFVVTGVLMPFITLVIVSVLGRGEELTRDLPKWAEILFLATLYLVIGSTFAMPRITNVAYEMALVPLEIVSDTPANHLIFAVVFNIIAMLFMLKPNTIISSVGKFMTPALLVLLVVVTVTVFMSPLSDIAAPSKSYADSSALTTGLISGYQTMDVLAAIAFGGIVARALSAKNVTEPQKIMRYTISAGCISVVLLAALYFSLFYLGATSDQVAQGASNGGQIFSRYVNVLFGKEGSWIMSGIIFLASLTTLVGVTSACAYYFAKFSNRLPYAFWVVVFTIMTTIISENGLTKLLQVTIPALLLIYPVAIMLVVLQFVRAKLPRVKLTYNATIAVTVCFSLCDSLNNVGLLSDSVKQFLGNFPLYDNGLAWLIPALGVMFLTMLVGKRAK
>NZ_LS483443.1|WP_006719578.1|290881_292516_+|CTP-synthase-(glutamine-hydrolyzing)
MATNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPTQHGEVFVTQDGAETDLDLGHYERFIRTKMTKRNNFTTGKIYSEVLRKERRGDYLGATIQVIPHITNEIKARVIDGAAGHDVAIVEVGGTVGDIESLPFLEALRQLAVQVGRERTIFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRMIPPNERAKIALFCNVPERAVVSLKDVSSIYQIPALLKSQGLDDFICNRFHLTCPEADLSEWEQVLYQQANPTGEVTIGMVGKYTELPDAYKSVNEALKHAGLKNRLSVNIKYIDSQDVETKGVDILKGLDGILVPGGFGYRGVEGKILTAKYARENNIPYLGICLGMQVALIEFARNVAGMTQANSSEFDRTCPQPVVGLITEWQNAEGNTEVRSDESDLGGTMRLGAQKCHLIEGSLARQLYGAETIEERHRHRYEVNNVLLPQIEKAGLKVTGLSADKKLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFEGFVKAAKTNQKKSD
>NZ_LS483443.1|WP_006719579.1|292818_293481_+|thiamine-phosphate-synthase
MSEAVSHLSEIIPPKAPFAPTEFKLGLYVIVDSYEWIERLIHAGVKTLQIRIKDRSPEQAEEEIARCIALAKQHQVRLFVDDFWSLAIKYQAYGVHLGQEDLLTADLNAIQQAGLRLGVSTHNQEEVDLVLPLRPSYVALGHIFPTQTKDMPSAPQGITNLAAQVKNLGKMPTVAIGGISASHFPDILATGVGSIAVISAVTKAQDWQRAVKNLQQYFVE

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Crispr_ID: NZ_LS483443_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483443_3

1718980-1719099

Orphan

Consensus_repeat	Method
GGTACATTTTTTGCTACTGGTACTAGGTACATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483443_3

>merge|NZ_LS483443|3|1718980-1719099|CRISPRCasFinder
GGTACATTTTTTGCTACTGGTACTAGGTACATTTTTTGCTACTACCCTAGTGGCATTTTTTGTCACTGGTTGTATTTCTTGTAACTGGGTACATTTTTTGCTACTGGTACTAGGTACATT

>NZ_LS483443|3|4|1718980-1719099|CRISPRCasFinder
GGTACATTTTTTGCTACTGGTACTAGGTACATT	TTTTGCTACTACCCTAGTGGCATTTTTTGTCACTGGTTGTATTTCTTGTAACTG
GGTACATTTTTTGCTACTGGTACTAGGTACATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483443.1\|WP_155811790.1\|1723009_1723498_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006718649.1\|1716453_1716747_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_LS483443.1\|WP_006718666.1\|1723857_1724382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_032997911.1\|1724887_1725355_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_081456143.1\|1726752_1727028_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006718650.1\|1716816_1717452_-\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
NZ_LS483443.1\|WP_032997910.1\|1720505_1720706_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226660
NZ_LS483443.1\|WP_006718664.1\|1722609_1722978_+\|STAS-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379507
NZ_LS483443.1\|WP_050540580.1\|1715208_1715436_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374351
NZ_LS483443.1\|WP_006718663.1\|1721564_1722617_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226951
NZ_LS483443.1\|WP_006718657.1\|1719380_1720145_-\|KilA-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|367917
NZ_LS483443.1\|WP_006718636.1\|1714317_1714674_-\|DUF2570-family-protein	unknown	unknown	gnl\|CDD\|371261
NZ_LS483443.1\|WP_006718658.1\|1720188_1720485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006718646.1\|1716094_1716457_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NZ_LS483443.1\|WP_006718654.1\|1717936_1718611_-\|replication-protein	unknown	unknown	gnl\|CDD\|369163
NZ_LS483443.1\|WP_032997909.1\|1713717_1714068_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_LS483443.1\|WP_032997912.1\|1725973_1726306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483443.1\|WP_006718638.1\|1714649_1715225_-\|lysozyme	unknown	unknown	gnl\|CDD\|381620
NZ_LS483443.1\|WP_006718652.1\|1717421_1717940_-\|DNA-N-6-adenine-methyltransferase	unknown	unknown	gnl\|CDD\|368643
NZ_LS483443.1\|WP_006718641.1\|1715595_1716102_-\|antitermination-protein	unknown	unknown	gnl\|CDD\|368957

Protein	Function_ID	Function_description	E-value
NZ_LS483443.1\|WP_006718649.1\|1716453_1716747_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	2.18602e-38
NZ_LS483443.1\|WP_006718650.1\|1716816_1717452_-\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	8.95074e-91
NZ_LS483443.1\|WP_032997910.1\|1720505_1720706_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226660	COG4197, COG4197, Uncharacterized protein conserved in bacteria, prophage-related [Function unknown].	0.000211896
NZ_LS483443.1\|WP_006718664.1\|1722609_1722978_+\|STAS-like-domain-containing-protein	gnl\|CDD\|379507	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 99 and 341 amino acids in length. This domain is distantly related to the STAS domain.	1.71592e-09
NZ_LS483443.1\|WP_050540580.1\|1715208_1715436_-\|hypothetical-protein	gnl\|CDD\|374351	pfam16080, Phage_holin_2_3, Bacteriophage holin family HP1. Phage_holin_2_3 is a family of small hydrophobic phage proteins called holins with one transmembrane domain. Holins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	2.62878e-08
NZ_LS483443.1\|WP_006718663.1\|1721564_1722617_+\|hypothetical-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	0.000447755
NZ_LS483443.1\|WP_006718657.1\|1719380_1720145_-\|KilA-N-domain-containing-protein	gnl\|CDD\|367917	pfam04383, KilA-N, KilA-N domain. The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.	4.5291e-24
NZ_LS483443.1\|WP_006718636.1\|1714317_1714674_-\|DUF2570-family-protein	gnl\|CDD\|371261	pfam10828, DUF2570, Protein of unknown function (DUF2570). This is a family of proteins with unknown function.	2.73036e-05
NZ_LS483443.1\|WP_006718646.1\|1716094_1716457_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	2.14362e-22
NZ_LS483443.1\|WP_006718654.1\|1717936_1718611_-\|replication-protein	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	8.9254e-71
NZ_LS483443.1\|WP_032997909.1\|1713717_1714068_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	1.14305e-12
NZ_LS483443.1\|WP_006718638.1\|1714649_1715225_-\|lysozyme	gnl\|CDD\|381620	cd16901, lyz_P1, P1 lysozyme Lyz-like proteins. Enterobacteria phage P1 lysozyme Lyz is secreted to the Escherichia coli periplasm where it is membrane bound and inactive. Activation involves the release from the membrane, an intramolecular thiol-disulfide isomerization and extensive structural rearrangement of the N-terminal region. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	1.57232e-56
NZ_LS483443.1\|WP_006718652.1\|1717421_1717940_-\|DNA-N-6-adenine-methyltransferase	gnl\|CDD\|368643	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam). This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.	2.17763e-31
NZ_LS483443.1\|WP_006718641.1\|1715595_1716102_-\|antitermination-protein	gnl\|CDD\|368957	pfam06530, Phage_antitermQ, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	2.56276e-05

>NZ_LS483443.1|WP_006718654.1|1717936_1718611_-|replication-protein
MRTVANLAQVIGSEPNYRAPVEKARISDNATKLVDRMFQRLKALHPAWKQAFATTEDYNYAKQIWLEELLKAGVVTPLKLKRGLDIAATQASAFFPSVGQFIAWCNITDYSTLGLPTPDELPARVSKFQAVYCTDGEDKFNYLSDAEYWLLTDLCSRGRRDQWTPTEFKKECEQALKAIAKRIESGETIPARRKQLPTQTTVPTSPEKAAENIAKLKQIIGMKR
>NZ_LS483443.1|WP_006718652.1|1717421_1717940_-|DNA-N-6-adenine-methyltransferase
MTERKFDKDTYPTSLSLFNPIHAEFGFTIDGAALPHNAKLERYVTPEMDYLTYPLQNERIFINPPFSDPLSFIKRSVELFENYNCLVVMLLPVDISTEWFSLITQKATEIRFIVGGRIKFLSPQTGLWTDVCRGNHLAIFDPRHRNMGQVIRHVHIDDLGELEWRAKSRKKR
>NZ_LS483443.1|WP_006718650.1|1716816_1717452_-|DUF1367-family-protein
MASQKPKKTVIHAVKYANGAVVAETDYDRNLLKGLPVGSAVKITPIGNNRNYQHHKKFFALLDAGFEYWQPEFSVLTQAEEWIAQAVAREIAVAANDENLYQNVTKPIADSVLAKVRLNRESKLDYEGMKTLESYLDHVMKKAGFYDIKPAQDGGTVKERWSISFANMSQERFNDVYKTVYGVIWNETLCNIYEDEAALDNKINQLIGFGG
>NZ_LS483443.1|WP_006718649.1|1716453_1716747_-|DUF1364-domain-containing-protein
MGKIDYRKEAKGRECQVRLVGVCNYNPETTVLAHIRAAGITGAGQKAPDQLGAWACSSCHDAIDLRTKIGYTKDELLLAHLEGMARTQAILIREGKL
>NZ_LS483443.1|WP_006718646.1|1716094_1716457_-|RusA-family-crossover-junction-endodeoxyribonuclease
MSDWLEICLPYPPSVNHYWKHTRQGKHYISKAGREFKRIATEVCSQFDPFESAVEIKMEIYFPDNRPRDLDNLPKGIFDSLVGAGLIKDDNRKIIRKYSIEEKGVVSKGKSIIKIRGIDA
>NZ_LS483443.1|WP_006718641.1|1715595_1716102_-|antitermination-protein
MRKFSELELTEEQEEFVDKHMYPWGAWIRLGRLDKPGLNIIARLMKSVIPAEPSEPVCDDETGMMISELIEQFFFKNDRTLHYIVFSYYVNKNTINRIAVKLRENCGEMKMQPCAGKSDIRIPSLKTVKRNVEKELKLAKAIIHELLVTGFVILRTGRQNAKSIKIIY
>NZ_LS483443.1|WP_050540580.1|1715208_1715436_-|hypothetical-protein
MQVFKDMPIESQVLGWVTGFIGALTLSEWAILIGIIVTVCGYWRESRYKKRMLELEEIRAGIRDKNGNLINEQNS
>NZ_LS483443.1|WP_006718638.1|1714649_1715225_-|lysozyme
MNKTVKKTLAGAVCLVSVIVGKVYTDYADDLVISKEGAQAIGDEEGCRRDPYRCSAHVLTYGIGAAVTGGTMILENKRYTDEEIAEQYAKDLKKSGDCIMLYFNGADMNQNQIDALGSVIHNLGCGGARYYYDKKSGKRLKTQLYKAALDKDFVRMCNTFTNYVGVNGKPHPSIMKRRIRERDLCLTPVNN
>NZ_LS483443.1|WP_006718636.1|1714317_1714674_-|DUF2570-family-protein
MFNPGEQLIKRIKFGAICVGVVAVLCLLGVLRYQYNTIIDLRADNKEQAQALSQKEKEITRLKDEAAENQRIMLELSKQEAEARSESDEVIKSIPQDIKQSHPYNASAPRNVVEFLRK
>NZ_LS483443.1|WP_032997909.1|1713717_1714068_-|HNH-endonuclease
MPARIPKACRKQGCKNTTTHSSGYCELHLGCGWQRHQQGKTASQRGYGSQWRALRTVALERDKYLCQECLKKGRYVTATTVDHIIAKAHGGSDNLSNLQSLCNSCHKFKTARERLR
>NZ_LS483443.1|WP_006718657.1|1719380_1720145_-|KilA-N-domain-containing-protein
MKTKIQLYDTQIRQDEQGRFCLNDLHQASGGESRHRPAYWLSNQQTQELIGEISKDGFPSILTKQGLGTFVSKELVYAYAMWISPKFHLYVIRTFDRAVTNQNSTALLPDFSDPVAAARAWADAKEGEQRALLDSKQKSEQIESMQSYFRHGMSAPQFVKGLNGANSSQINDFLARKGWVYKDKYGWRVTSRARDVYLTEENTQVAEHGQEVRIFYKPVLLQKGAAKIYDWYMKNQLPMKANWNGNFKQDKTVA
>NZ_LS483443.1|WP_006718658.1|1720188_1720485_-|hypothetical-protein
MARNKLTRSAKALSDRVMNKYWKQKQCEIADEMECSPSTLSRFVSNEDANQAFNFIAANGFDVFDVNSHVAIEKSELELLLLAAKGFDDRLREKYLGK
>NZ_LS483443.1|WP_032997910.1|1720505_1720706_-|helix-turn-helix-domain-containing-protein
MELKNYLADRPRGFKADFARKIGISKSFLRQIETGEAKTPIYLARKIEAVTEKAVKKAELRPDVWN
>NZ_LS483443.1|WP_006718663.1|1721564_1722617_+|hypothetical-protein
MNKKKNNNSPIKFRAPYKSGKYHIFPTPNILNIYNEESYESTVRYINSLDSIIKNKYKNVIISFVDCEYIKAAAMMIFYAKIETILKKSDVNISIKMSLNNEINKFIKQVGLIFLCANRCSENDIRKTKDGYPIINGNEGEFRDDIIDFIKNEIYQGVLTDEEEYTLSDAIQEAMSNVYRHAYPKHTPSNQRPWWWMCTVVDDQLFLLLYDKGQGIPSTFTKGNKLFDKIDWDSSDVKSVITPTLKQYKLPESTNIAELIKNTKVSDSIIISLAMSDDITRMTGNDKYKHGQGSKSIKKLVSDNKNGKLWVYSNRGLLFYQDDRTLPELYNMRNSIEGTLVQWNIRIKND
>NZ_LS483443.1|WP_006718664.1|1722609_1722978_+|STAS-like-domain-containing-protein
MIKTITIVNDFSQSPYGRNEDDVTPEEYKNTGKAFRETLLAPALRDKSNDKVIVVLTGYNRYGRSFLDEAFGGLIRKDGFTYQELLKRLEYKHDTVKSIVNLISERLVKAAKDLGQLPDEDI
>NZ_LS483443.1|WP_155811790.1|1723009_1723498_+|hypothetical-protein
MAVIVQLTIYFGKLLDLKDSITVFTSSIVTAAGWYWAAHLNHRTFERSEFIKNKDKLTNLVDSCFDKLDELFSKRETTPEDIEIFITEKTTEIENKASQLSRVFKSEIIFLTTDTLTKMKSYPLDLFENNNTFHEKKSKLQKFRTDVLEEIDQNYEEWLKKL
>NZ_LS483443.1|WP_006718666.1|1723857_1724382_-|hypothetical-protein
MEEYAKLLNTILTKVVFNHMTMFFVFLFVGFTFIPPELTLYLNAKTPAFFPDWFTLANFGSLIFALVSTMIWILISKSTKSIISKLRESLKTNSEQARLINLLHNLSTEEQHVLAMSCLNERIIFPDNRTQLAIEKLLSKELISYGWTNDKYELNPLIRNVVLAELDKSMNSHH
>NZ_LS483443.1|WP_032997911.1|1724887_1725355_+|hypothetical-protein
MEYVTISKSEHDFLVTQAKRMKFISGYRPTLMEETDTGEYSITVSTMGIIDTLRYSKGIECIDLAIKDIREMQQVFWIFEPTEIYAGRTIEEILNEFFSEEDRKEILKDNLYGPVDLNEKFPVKEDIGSIAVEKTIKELLDEMVVFPDVVLSSYS
>NZ_LS483443.1|WP_032997912.1|1725973_1726306_-|hypothetical-protein
MWEALLSSIFSVLKSHFDEVILRICTWFLSFILCWLTMPERVIDYLLTHPLPALPDYVLFYVFLLTVATCTWQVFFIILDIMVLLVDKIINYKAIKPQSERVKVDRKQKD
>NZ_LS483443.1|WP_081456143.1|1726752_1727028_+|hypothetical-protein
MVCAVITACVWGIALIGLSLSRPTLTVDTDYNNNAVSEQISLEWERKAKAEWASEFGDAPPNLSAEAQEYLEKQTVRKQAELNQRKGKENG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS483443_2	2.2\|281287\|27\|NZ_LS483443\|PILER-CR	281287-281313	27	NZ_CP031652	Pantoea agglomerans strain TH81 plasmid unnamed3, complete sequence	46146-46172	5	0.815
NZ_LS483443_2	2.2\|281287\|27\|NZ_LS483443\|PILER-CR	281287-281313	27	MN508623	UNVERIFIED: Enterobacter phage EC-F1, complete genome	75965-75991	6	0.778
NZ_LS483443_2	2.2\|281287\|27\|NZ_LS483443\|PILER-CR	281287-281313	27	MH823906	Citrobacter phage Maroon, complete genome	54529-54555	6	0.778
NZ_LS483443_2	2.2\|281287\|27\|NZ_LS483443\|PILER-CR	281287-281313	27	KU160494	Vibrio phage vB_VmeM-32, complete genome	100960-100986	6	0.778
NZ_LS483443_2	2.2\|281287\|27\|NZ_LS483443\|PILER-CR	281287-281313	27	NC_048646	Cronobacter phage vB_CsaM_leE, complete genome	56127-56153	6	0.778
NZ_LS483443_1	1.2\|276281\|32\|NZ_LS483443\|PILER-CR	276281-276312	32	NZ_CP027854	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-2, complete sequence	37326-37357	7	0.781
NZ_LS483443_2	2.5\|281354\|34\|NZ_LS483443\|CRISPRCasFinder	281354-281387	34	MG945179	UNVERIFIED: Microviridae sp. isolate 515-1801, complete genome	2153-2186	7	0.794
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	MT708547	Klebsiella phage Muenster, complete genome	229940-229971	8	0.75
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NZ_KY352353	Bacillus thuringiensis serovar israelensis strain 1.24 plasmid pT0124-4, complete sequence	42878-42909	9	0.719
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	LC128536	Bacillus thuringiensis serovar israelensis plasmid pBTI-6 DNA, complete sequence, strain: HD522	31197-31228	9	0.719
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NC_010076	Bacillus thuringiensis serovar israelensis plasmid pBtoxis, complete sequence	42879-42910	9	0.719
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NC_018510	Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence	119150-119181	9	0.719
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NZ_CP053973	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed4, complete sequence	72715-72746	9	0.719
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NZ_CP013279	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-4-128K, complete sequence	41810-41841	9	0.719
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NZ_CP039725	Bacillus thuringiensis strain BT-59 plasmid p4, complete sequence	85776-85807	9	0.719
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NZ_CP045026	Bacillus thuringiensis strain JW-1 plasmid p4, complete sequence	42877-42908	9	0.719
NZ_LS483443_2	2.4\|281283\|33\|NZ_LS483443\|CRISPRCasFinder	281283-281315	33	MN508623	UNVERIFIED: Enterobacter phage EC-F1, complete genome	75961-75993	10	0.697
NZ_LS483443_2	2.4\|281283\|33\|NZ_LS483443\|CRISPRCasFinder	281283-281315	33	MH823906	Citrobacter phage Maroon, complete genome	54527-54559	10	0.697
NZ_LS483443_2	2.4\|281283\|33\|NZ_LS483443\|CRISPRCasFinder	281283-281315	33	NC_048646	Cronobacter phage vB_CsaM_leE, complete genome	56125-56157	10	0.697
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	MG592456	Vibrio phage 1.081.O._10N.286.52.C2, partial genome	60094-60125	10	0.688
NZ_LS483443_2	2.14\|281638\|32\|NZ_LS483443\|CRISPRCasFinder	281638-281669	32	NZ_CP040853	Lactobacillus murinus strain V10 plasmid unnamed, complete sequence	101473-101504	11	0.656

1. spacer 2.2|281287|27|NZ_LS483443|PILER-CR matches to NZ_CP031652 (Pantoea agglomerans strain TH81 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.815

ctttaatttcgcttcgatttcagaaat	CRISPR spacer
ctttaatttcgcttcgattttatcggt	Protospacer
********************.*  ..*

2. spacer 2.2|281287|27|NZ_LS483443|PILER-CR matches to MN508623 (UNVERIFIED: Enterobacter phage EC-F1, complete genome) position: , mismatch: 6, identity: 0.778

ctttaatttcgcttcgatttcagaaat	CRISPR spacer
atttaatttctcttcgatttcaaacca	Protospacer
 ********* ***********.*

3. spacer 2.2|281287|27|NZ_LS483443|PILER-CR matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 6, identity: 0.778

ctttaatttcgcttcgatttcagaaat	CRISPR spacer
atttaatttctcttcgatttcaaacca	Protospacer
 ********* ***********.*

4. spacer 2.2|281287|27|NZ_LS483443|PILER-CR matches to KU160494 (Vibrio phage vB_VmeM-32, complete genome) position: , mismatch: 6, identity: 0.778

ctttaatttcgcttcgatttcagaaat	CRISPR spacer
gaataatttcgcttcgaattcacaaaa	Protospacer
   ************** **** ***

5. spacer 2.2|281287|27|NZ_LS483443|PILER-CR matches to NC_048646 (Cronobacter phage vB_CsaM_leE, complete genome) position: , mismatch: 6, identity: 0.778

ctttaatttcgcttcgatttcagaaat	CRISPR spacer
atttaatttctcttcgatttcaaacca	Protospacer
 ********* ***********.*

6. spacer 1.2|276281|32|NZ_LS483443|PILER-CR matches to NZ_CP027854 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-2, complete sequence) position: , mismatch: 7, identity: 0.781

agcgaataaaattcatcgccattatactcgtg	CRISPR spacer
atctagtaaaattcatcgtcatcatactccta	Protospacer
* * *.************.***.****** *.

7. spacer 2.5|281354|34|NZ_LS483443|CRISPRCasFinder matches to MG945179 (UNVERIFIED: Microviridae sp. isolate 515-1801, complete genome) position: , mismatch: 7, identity: 0.794

tgtaaagtg---ctaaataaaccttatccattattgt	CRISPR spacer
---aaaatgtatctaaataaagattatccattattgg	Protospacer
   ***.**   *********  *************

8. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 8, identity: 0.75

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctgatcttcatttgattgccatgcttttctat	Protospacer
***. .  .************* ***** ***

9. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NZ_KY352353 (Bacillus thuringiensis serovar israelensis strain 1.24 plasmid pT0124-4, complete sequence) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

10. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to LC128536 (Bacillus thuringiensis serovar israelensis plasmid pBTI-6 DNA, complete sequence, strain: HD522) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

11. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NC_010076 (Bacillus thuringiensis serovar israelensis plasmid pBtoxis, complete sequence) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

12. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NC_018510 (Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

13. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NZ_CP053973 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

14. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NZ_CP013279 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-4-128K, complete sequence) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

15. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NZ_CP039725 (Bacillus thuringiensis strain BT-59 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

16. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NZ_CP045026 (Bacillus thuringiensis strain JW-1 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
ctaatactaatttgatttccatacttttatat	Protospacer
**..     ******** **** *********

17. spacer 2.4|281283|33|NZ_LS483443|CRISPRCasFinder matches to MN508623 (UNVERIFIED: Enterobacter phage EC-F1, complete genome) position: , mismatch: 10, identity: 0.697

tctcctttaatttcgcttcgatttcagaaatca	CRISPR spacer
gatcatttaatttctcttcgatttcaaaccatg	Protospacer
  ** ********* ***********.*   ..

18. spacer 2.4|281283|33|NZ_LS483443|CRISPRCasFinder matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 10, identity: 0.697

tctcctttaatttcgcttcgatttcagaaatca	CRISPR spacer
gatcatttaatttctcttcgatttcaaaccatg	Protospacer
  ** ********* ***********.*   ..

19. spacer 2.4|281283|33|NZ_LS483443|CRISPRCasFinder matches to NC_048646 (Cronobacter phage vB_CsaM_leE, complete genome) position: , mismatch: 10, identity: 0.697

tctcctttaatttcgcttcgatttcagaaatca	CRISPR spacer
gatcatttaatttctcttcgatttcaaaccatg	Protospacer
  ** ********* ***********.*   ..

20. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to MG592456 (Vibrio phage 1.081.O._10N.286.52.C2, partial genome) position: , mismatch: 10, identity: 0.688

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
gcttgccatatttgatagccattctattatac	Protospacer
 .  *. .******** ******** *****.

21. spacer 2.14|281638|32|NZ_LS483443|CRISPRCasFinder matches to NZ_CP040853 (Lactobacillus murinus strain V10 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

ctgggtggtatttgattgccattcttttatat	CRISPR spacer
agatgttgtatttgatcgccattctttagctg	Protospacer
  . ** *********.********** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

44570 : 67725

uncultured_Caudovirales_phage(50.0%)

head,integrase,tail,terminase,portal,protease,tRNA,capsid

attL 53158:53177|attR 68082:68101

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006719227.1\|44570_46586_+	NAD-dependent DNA ligase LigA	A0A289ZTZ3	Serratia_phage	7.7e-143	49.8
WP_006719228.1\|46656_47235_-	thymidine kinase	A0A076YPF1	Citrobacter_phage	5.2e-52	51.6
WP_006719229.1\|47234_47468_-	hypothetical protein	NA	NA	NA	NA
WP_006719230.1\|47538_48567_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.3e-113	59.1
WP_005701713.1\|48791_49007_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_006719232.1\|49128_50889_+	DNA primase	A0A1S5RF71	Helicobacter_phage	1.1e-44	32.2
WP_006719233.1\|50964_52830_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	3.4e-36	36.3
53158:53177	attL	NA	NA	NA	NA
WP_006719234.1\|53231_54428_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.2e-79	39.7
WP_006719237.1\|56362_56806_-	hypothetical protein	NA	NA	NA	NA
WP_006719238.1\|56805_57030_-	hypothetical protein	NA	NA	NA	NA
WP_006719239.1\|57022_57373_-	hypothetical protein	NA	NA	NA	NA
WP_006719240.1\|57359_57551_-	hypothetical protein	NA	NA	NA	NA
WP_006719242.1\|57566_57749_-	hypothetical protein	NA	NA	NA	NA
WP_006719243.1\|57741_58341_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_005633836.1\|58539_58851_-	hypothetical protein	NA	NA	NA	NA
WP_006719245.1\|58862_59066_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_006719246.1\|59210_60167_-	hypothetical protein	NA	NA	NA	NA
WP_006719247.1\|60311_60872_-	hypothetical protein	NA	NA	NA	NA
WP_005633848.1\|63094_63463_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	3.0e-37	66.1
WP_006719250.1\|63683_64040_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.9e-28	53.6
WP_006719251.1\|64054_64369_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.7e-18	49.5
WP_006719252.1\|64355_64700_-\|head	phage head closure protein	NA	NA	NA	NA
WP_006719253.1\|64683_65916_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.8e-143	62.5
WP_006719254.1\|65917_66484_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.1e-49	63.4
WP_032997978.1\|66537_67725_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.4e-131	63.3
68082:68101	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1637955 : 1735063

Mannheimia_phage(18.42%)

head,integrase,tail,terminase,portal,protease,lysis,tRNA,capsid

attL 1676953:1676970|attR 1709395:1709412

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032997898.1\|1637955_1638648_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_006718519.1\|1638647_1639058_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_006718521.1\|1639501_1639978_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	4.8e-27	44.2
WP_032997899.1\|1639983_1641183_+	cysteine desulfurase	Q2XUY6	environmental_halophage	1.6e-58	32.4
WP_006718525.1\|1641179_1641560_+	SufE family protein	NA	NA	NA	NA
WP_006718527.1\|1641598_1643029_-	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	A0A1B1IUK5	uncultured_Mediterranean_phage	6.9e-37	28.5
WP_006718529.1\|1643146_1644079_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	A0A1W6JP29	Morganella_phage	6.9e-54	38.8
WP_006718531.1\|1644130_1644694_-	molecular chaperone	NA	NA	NA	NA
WP_006718533.1\|1644693_1645305_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_006718535.1\|1645313_1645760_-	NfeD family protein	NA	NA	NA	NA
WP_006718537.1\|1645779_1646706_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_032997900.1\|1652847_1653921_-	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA	NA	NA	NA
WP_006718541.1\|1654047_1655331_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_006718542.1\|1655401_1657993_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_006718544.1\|1658059_1658863_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_006718546.1\|1658998_1659340_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	2.9e-26	49.1
WP_032997901.1\|1659341_1659704_+	YacL family protein	NA	NA	NA	NA
WP_006718550.1\|1659734_1662116_+	penicillin-binding protein 1B	NA	NA	NA	NA
WP_006718551.1\|1662247_1663939_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_006718552.1\|1664236_1665832_+	lactate permease LctP family transporter	NA	NA	NA	NA
WP_006718553.1\|1665929_1666655_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_006718554.1\|1666661_1668074_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_032997902.1\|1668073_1668781_+	lactate utilization protein C	NA	NA	NA	NA
WP_006718556.1\|1668966_1670874_+	FTR1 family iron permease	NA	NA	NA	NA
WP_006718557.1\|1670916_1671438_+	iron transporter	NA	NA	NA	NA
WP_006718558.1\|1671567_1672986_+	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_006718559.1\|1672988_1674314_+	ABC transporter permease	NA	NA	NA	NA
WP_006718560.1\|1674300_1675440_+	ABC transporter permease	NA	NA	NA	NA
WP_006718561.1\|1675441_1676113_+	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	9.2e-16	31.4
WP_006718563.1\|1676102_1676609_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_006718565.1\|1676605_1676917_+	c-type cytochrome	NA	NA	NA	NA
1676953:1676970	attL	NA	NA	NA	NA
WP_006718567.1\|1682851_1683055_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_006718569.1\|1683138_1684071_-	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA
WP_032997903.1\|1684221_1685688_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-97	41.4
WP_006718572.1\|1685894_1687271_+	purine permease	H9YQ34	environmental_Halophage	7.9e-22	45.4
WP_006718574.1\|1687426_1688782_+	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_006718576.1\|1688891_1689761_+	DMT family transporter	NA	NA	NA	NA
WP_006718577.1\|1689931_1691491_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_006718580.1\|1691693_1692893_+\|integrase	site-specific integrase	G9L697	Escherichia_phage	5.6e-133	58.2
WP_006718582.1\|1692907_1693477_-	hypothetical protein	NA	NA	NA	NA
WP_050540578.1\|1693476_1693674_-	hypothetical protein	NA	NA	NA	NA
WP_006718586.1\|1693870_1694722_-	hypothetical protein	NA	NA	NA	NA
WP_006718588.1\|1694762_1695101_-	hypothetical protein	NA	NA	NA	NA
WP_006718590.1\|1695097_1698313_-\|tail	phage tail protein	A0A0M3LR06	Mannheimia_phage	1.3e-06	63.2
WP_006718593.1\|1698963_1699722_-	C40 family peptidase	A0A0M3LP75	Mannheimia_phage	1.9e-62	47.8
WP_006718595.1\|1699723_1700458_-\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	1.2e-72	56.4
WP_032997904.1\|1700457_1700790_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	2.5e-14	33.9
WP_006718599.1\|1700799_1704126_-	tape measure protein	A0A0E3GMH8	Enterobacteria_phage	1.2e-60	26.7
WP_006718602.1\|1704189_1704387_-	hypothetical protein	NA	NA	NA	NA
WP_006718604.1\|1704462_1704888_-	hypothetical protein	NA	NA	NA	NA
WP_006718605.1\|1705070_1705265_+	hypothetical protein	NA	NA	NA	NA
WP_032997905.1\|1705239_1705470_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_032998163.1\|1705514_1705928_-	hypothetical protein	NA	NA	NA	NA
WP_006718611.1\|1705982_1706636_-	hypothetical protein	NA	NA	NA	NA
WP_006718612.1\|1706639_1706984_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_006718615.1\|1706985_1707468_-	HK97 gp10 family phage protein	A0A220NRP5	Escherichia_phage	8.9e-13	31.5
WP_006718616.1\|1707460_1707784_-\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	5.8e-16	46.3
WP_032997907.1\|1707780_1708101_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	2.2e-07	37.3
WP_006718619.1\|1708150_1709377_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.9e-145	64.8
WP_006718621.1\|1709442_1710045_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	5.8e-78	71.9
1709395:1709412	attR	NA	NA	NA	NA
WP_006718623.1\|1710037_1711258_-\|portal	phage portal protein	A0A1W6JP33	Morganella_phage	1.2e-143	60.9
WP_006718625.1\|1711254_1711407_-	hypothetical protein	NA	NA	NA	NA
WP_006718628.1\|1711403_1713110_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	1.9e-243	71.4
WP_006718629.1\|1713106_1713589_-\|terminase	phage terminase small subunit P27 family	Q8W632	Enterobacteria_phage	1.4e-29	44.9
WP_032997909.1\|1713717_1714068_-	HNH endonuclease	A0A1P8DTD1	Proteus_phage	6.9e-39	64.7
WP_006718636.1\|1714317_1714674_-	DUF2570 family protein	NA	NA	NA	NA
WP_006718638.1\|1714649_1715225_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	1.2e-35	43.0
WP_050540580.1\|1715208_1715436_-	hypothetical protein	NA	NA	NA	NA
WP_006718641.1\|1715595_1716102_-	antitermination protein	K7PHU3	Enterobacteria_phage	3.2e-13	31.4
WP_006718646.1\|1716094_1716457_-	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	6.0e-30	49.2
WP_006718649.1\|1716453_1716747_-	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	7.8e-28	68.1
WP_006718650.1\|1716816_1717452_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	9.3e-18	26.9
WP_006718652.1\|1717421_1717940_-	DNA N-6-adenine-methyltransferase	D0UIL3	Aggregatibacter_phage	4.5e-79	82.4
WP_006718654.1\|1717936_1718611_-	replication protein	D0UIL4	Aggregatibacter_phage	9.0e-120	93.8
WP_006718657.1\|1719380_1720145_-	KilA-N domain-containing protein	Q8W644	Enterobacteria_phage	5.2e-31	38.7
WP_006718658.1\|1720188_1720485_-	hypothetical protein	Q7Y5W3	Haemophilus_phage	1.2e-47	99.0
WP_032997910.1\|1720505_1720706_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006718663.1\|1721564_1722617_+	hypothetical protein	NA	NA	NA	NA
WP_006718664.1\|1722609_1722978_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_155811790.1\|1723009_1723498_+	hypothetical protein	NA	NA	NA	NA
WP_006718666.1\|1723857_1724382_-	hypothetical protein	Q7Y5W8	Haemophilus_phage	1.1e-59	69.4
WP_032997911.1\|1724887_1725355_+	hypothetical protein	NA	NA	NA	NA
WP_032997912.1\|1725973_1726306_-	hypothetical protein	NA	NA	NA	NA
WP_081456143.1\|1726752_1727028_+	hypothetical protein	Q776W5	Haemophilus_phage	2.9e-08	40.7
WP_006718671.1\|1727020_1727308_+	hypothetical protein	NA	NA	NA	NA
WP_006718672.1\|1727294_1727459_+	hypothetical protein	NA	NA	NA	NA
WP_032997913.1\|1727461_1728379_+	hypothetical protein	A0A0M3LR66	Mannheimia_phage	5.8e-61	47.8
WP_006718674.1\|1728391_1729273_+	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	5.2e-59	59.4
WP_006718675.1\|1729269_1729929_+	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	2.9e-83	74.4
WP_006718677.1\|1730102_1730537_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_006718681.1\|1730734_1730947_+	hypothetical protein	NA	NA	NA	NA
WP_006718684.1\|1730952_1731132_+	AlpA family phage regulatory protein	A0A2H4J8C8	uncultured_Caudovirales_phage	5.6e-05	44.9
WP_006718686.1\|1731825_1732779_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_006718688.1\|1732850_1733708_+	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_006718690.1\|1733752_1735063_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483443

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection