CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR130779	Pseudomonas oleovorans strain T9AD chromosome POT9AD	1 crisprs	DEDDh,cas3,PD-DExK,DinG,csa3,RT	0	0	6	0
NZ_LR130780	Pseudomonas oleovorans strain T9AD plasmid POT9AD_p, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR130779_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR130779_1

5460609-5460764

Orphan

Consensus_repeat	Method
GGTGGACATGAAAGGCGATGTCCACCCTACGCACGGATTGAACGCGAACCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR130779_1

>merge|NZ_LR130779|1|5460609-5460764|CRISPRCasFinder
GGTGGACATGAAAGGCGATGTCCACCCTACGCACGGATTGAACGCGAACCGTAGGGTGGATCACGCTGTATCGATCCACCATAAAGGCACTCACCCGCATCGAGGTGGACATGAAAGGCGATGTCCACCCTACGCACGGATTGAACTCGAACCGTA

>NZ_LR130779|1|1|5460609-5460764|CRISPRCasFinder
GGTGGACATGAAAGGCGATGTCCACCCTACGCACGGATTGAACGCGAACCGTA	GGGTGGATCACGCTGTATCGATCCACCATAAAGGCACTCACCCGCATCGA
GGTGGACATGAAAGGCGATGTCCACCCTACGCACGGATTGAACTCGAACCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR130779.1\|WP_150609859.1\|5461837_5463793_+\|acetoacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|235134
NZ_LR130779.1\|WP_150609865.1\|5467962_5468529_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LR130779.1\|WP_134676845.1\|5464816_5466022_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NZ_LR130779.1\|WP_150609845.1\|5448615_5449917_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223727
NZ_LR130779.1\|WP_134676712.1\|5464061_5464820_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223904
NZ_LR130779.1\|WP_037047825.1\|5452340_5454227_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
NZ_LR130779.1\|WP_047591714.1\|5457821_5458622_+\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|168168
NZ_LR130779.1\|WP_150609851.1\|5454819_5455983_+\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_LR130779.1\|WP_150609848.1\|5450584_5452300_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR130779.1\|WP_150609861.1\|5466471_5467383_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176153
NZ_LR130779.1\|WP_150610283.1\|5449913_5450582_-\|peptidase-S8-and-S53-subtilisin-kexin-sedolisin	unknown	unknown	gnl\|CDD\|173797
NZ_LR130779.1\|WP_150609857.1\|5460866_5461766_+\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|180206
NZ_LR130779.1\|WP_037047879.1\|5469705_5470101_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100005
NZ_LR130779.1\|WP_150609863.1\|5467448_5467928_-\|DUF1348-family-protein	unknown	unknown	gnl\|CDD\|377770
NZ_LR130779.1\|WP_037047828.1\|5454403_5454784_+\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133403
NZ_LR130779.1\|WP_134676715.1\|5468643_5469564_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_LR130779.1\|WP_150609855.1\|5458618_5460559_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|227111
NZ_LR130779.1\|WP_017362973.1\|5466185_5466464_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_LR130779.1\|WP_150609842.1\|5447106_5448600_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143410
NZ_LR130779.1\|WP_150609853.1\|5456127_5457735_+\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415

Protein	Function_ID	Function_description	E-value
NZ_LR130779.1\|WP_150609859.1\|5461837_5463793_+\|acetoacetate--CoA-ligase	gnl\|CDD\|235134	PRK03584, PRK03584, acetoacetate--CoA ligase.	0
NZ_LR130779.1\|WP_150609865.1\|5467962_5468529_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.6462e-08
NZ_LR130779.1\|WP_134676845.1\|5464816_5466022_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	3.0634e-178
NZ_LR130779.1\|WP_150609845.1\|5448615_5449917_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	1.91169e-13
NZ_LR130779.1\|WP_134676712.1\|5464061_5464820_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	2.65387e-12
NZ_LR130779.1\|WP_037047825.1\|5452340_5454227_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	5.15185e-151
NZ_LR130779.1\|WP_047591714.1\|5457821_5458622_+\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|168168	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.	1.95511e-179
NZ_LR130779.1\|WP_150609851.1\|5454819_5455983_+\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_LR130779.1\|WP_150609848.1\|5450584_5452300_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.23263e-140
NZ_LR130779.1\|WP_150609861.1\|5466471_5467383_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176153	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.59386e-69
NZ_LR130779.1\|WP_150610283.1\|5449913_5450582_-\|peptidase-S8-and-S53-subtilisin-kexin-sedolisin	gnl\|CDD\|173797	cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.94435e-18
NZ_LR130779.1\|WP_150609857.1\|5460866_5461766_+\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|180206	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional.	0
NZ_LR130779.1\|WP_037047879.1\|5469705_5470101_+\|RidA-family-protein	gnl\|CDD\|100005	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	4.77804e-46
NZ_LR130779.1\|WP_150609863.1\|5467448_5467928_-\|DUF1348-family-protein	gnl\|CDD\|377770	pfam07080, DUF1348, Protein of unknown function (DUF1348). This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.	1.03352e-89
NZ_LR130779.1\|WP_037047828.1\|5454403_5454784_+\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133403	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.8215e-55
NZ_LR130779.1\|WP_134676715.1\|5468643_5469564_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.30948e-103
NZ_LR130779.1\|WP_150609855.1\|5458618_5460559_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_LR130779.1\|WP_017362973.1\|5466185_5466464_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	8.59476e-30
NZ_LR130779.1\|WP_150609842.1\|5447106_5448600_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143410	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences.	0
NZ_LR130779.1\|WP_150609853.1\|5456127_5457735_+\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0

>NZ_LR130779.1|WP_150609855.1|5458618_5460559_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MKPTHIDTLLVANRGEIACRVMRTAKAMGIRTVAVHSVIDAEARHVREADMAVDLGGAKPADSYLLIDRIIAAAKASGAQAIHPGYGFLSENAGFAQAIEQAGLVFLGPPASAIEAMGSKSAAKSLMEAAGVPLVPGYHGDKQDLETFREAAARIGYPVLLKAAAGGGGKGMKVAESEAQLGETLASAQREAQSAFGDSRMLVEKYVLKPRHVEIQVFADRHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSTELRRAMGEAAVKAAQAIGYVGAGTVEFLLDERGDFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEPLPISQQQVPLNGHAIEVRLYAEDPEHDFLPATGTLALYREGAAGDGRRFDSGVAEGDSVSPFYDPMLGKLIAWGEDREQARLRLLAMLDETLVGGVRTNLAFLRRILSHPAFAACELDTGFIPRHQQLLLPSPGELPERFWQLAADAWVQTEAALQRTDDSHSPWATRSGWRSAGAAEVDLHLSCQGTNRKVRAGNQALFGDDTLQADIEGTRQRLRCMRRGDTLYLQWHGELHAITRFDPIAAAEASHAQHGGLGAPMNGSIVRVLVEAGQTVEAGTALVVLEAMKMEHSIRAPEAGTVKALYCCEGEMVSEGTVLVELES
>NZ_LR130779.1|WP_047591714.1|5457821_5458622_+|gamma-carboxygeranoyl-CoA-hydratase
MTDFTTVQLETDTRGFATLWLNRAEKNNAFNAEMIRELILALDAVGEDKSLRFLLLRGRGKHFSAGADLAWMQQAAGLDYNANLNDARELAELMYNLAALKIPTLAVVQGAAFGGAVGLTSCCDLAIGSEDALFSLSEVRIGLAPAVISPFVVQAIGERAARRYALTAERFDGKRARELGLLAECYPADELESQVDAWVANLLLNSPQAMRASKDLLREVASGELTPALRRYTENAIARIRISPEGQEGLRAFLEKRTPAWQEPQA
>NZ_LR130779.1|WP_150609853.1|5456127_5457735_+|methylcrotonoyl-CoA-carboxylase
MAILHTQINTRSPEFAANQAAMLAQVDDLRALLARVQQGGGTKAQERHTARGKLLPRERINRLLDAGSPFLEIGQLAAHDVYGEDVPAAGVIAGIGRVEGVECMIVANDATVKGGSYYPLTVKKHLRAQAIARENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSALGIPQIAVVMGSCTAGGAYVPAMSDETIMVREQATIFLAGPPLVKAATGEVVSAEELGGADVHCKTSGVADHYAEDDEHALALARRSIANLNWRKLGQLDSRAPIAPRHAAEELYGVIPADAKQPFDVREVIARIVDDSQLDEFKALFGTTLVCGFARINGYPVAILANNGILFAESAQKGAHFVELACQRGIPLLFLQNITGFMVGKKYEEGGIAKHGAKLVTAVACAQVPKFTVIIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGAQQAAGVLVQVKREQAQRAGQPFGDDEEQRLKQPIVEQYEHQAHAFYSSARLWDDGVIDPAQTRDVLALALSASLNAPIEPTRFGVFRM
>NZ_LR130779.1|WP_150609851.1|5454819_5455983_+|isovaleryl-CoA-dehydrogenase
MSYPTLNFGLGETIDMLRDAVHHFAQVELAPRAAQIDRDNEFPMDMWRKFGDMGLLGMTVDEQYGGTNMGYLAHVVAMEEISRASASVGLSYGAHSNLCVNQIHKNGSHEQKLKYLPGLCSGEHVGALAMSEPNAGSDVVSMKLRAEKRGDRYMLNGNKMWITNGPDAHTYVIYAKTDVNAGSRGMTAFIVERDFKGFSRHQKLDKLGMRGSNTCELLFEDCEVPEENVLGAEGGGVRVLMSGLDYERTVLSGGPTGIMSACMDVVLPYVHERQQFKQSIGEFQLVQGKLADMYAGMNASKSYLYNVARACDRGEESRKDAAAVILYTAEMATRMALDTIQLLGGNGYTNEYPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETK
>NZ_LR130779.1|WP_037047828.1|5454403_5454784_+|MerR-family-DNA-binding-transcriptional-regulator
MPTTFSISDLARELDVTTRAIRFYEEQGMLSPERRGQERIYSPKDLVALKLILRGKRIGFSLAECKELIDLYDPSGGNRKQLETFMNKIAARRAQLEQQLLDIQQMQLELDTAEERCLAALAETNS
>NZ_LR130779.1|WP_037047825.1|5452340_5454227_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MAQSFQTDPLKDSRQARLRLVADGQLPPGVLREEIDASWRRSLGHGLDCLEGERSDFFHDLRLLLDDNRMLIDAATPEMEYLVTQQGRAGLVILGDAQANVLAIEGPDDYLKQPGLRDLRPGSCWSETLCGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPQGRIVGVLDVTREGIMAQPQDSLTMLMLAAGNIESRLFGLCYPDHLVLAFHSRPQYLGSAWHGLLALSLDGEVLAANERACELLQLSRETLTGRRASELIGERSPQFIARLLQGGISSVQTAKGEFFFRTLQVPRPASPGTGVPPRARPGAAARPLEDLAGQDTRYARALRMARQGLASDLPVLLLGETGTGKEVVARALHQSGRRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAQGGTLFLDEIGDMPLALQARLLRVLQERKVAPLGAAEEQDIDVALICATHHDLKRLVLEKHFREDLYYRINGVSLRLPALRERSDLEQMVASVLHRHGAAHVTLDRPLAELLGSYDWPGNIRQLEMVLRAALAMREEGETVIGLDHLTDSLLDELTGSCRQSGSIRENEMELIRTSLERHQGNVSAAADALGISRATLYRKLKQMGK
>NZ_LR130779.1|WP_150609848.1|5450584_5452300_-|ATP-binding-cassette-domain-containing-protein
MSRLLTRLVDTHDPELLRRSLAWLFGFVRPHRRAIAALLGLSLCASLLVLAQPWLTKSLIDDGLLARDFPRLLQVALAMVAVGILGTLLSGINRYLHTGLSGRILFALRDDLYRHLQQLSPAFYGRKRLGDILSRLDGDVAEIQRFAVDSLFSAVSSVIGLLGAVALMLVLSWQLSLLLALLIPLEVLWLRWMRRKVEREVRSLRERSADVSSFLVETLPAMKFIQASAAQQRESARLEGLGQGYMRQLLKVQVTEFFTHALPGTLTSLSRACAFLIGGYWVIQGTWQVGALIAFSTYLGMAVGPVQSLLGLYVALQRMTVSLGRVMELQQEPVSVRQPAAPSPLAEGGGELRLEAVHFSHEQRSGAVLRGVDLVILAGLKVAISGASGVGKSTLIDLLQRFYDPDQGRVLLDGVDLRELDLFALRRSIAVVSQDIVLFRGTLAENLSYSAPSASREALQRVARLARLDELIASLPQGLDSPLGERGQQLSGGQRQRIAIARALLQEPRILVLDEATSAVDEATEREVIAAIDQLFAGRTRILISHRPSTLREADLSLCLQQGRLQRLEPA
>NZ_LR130779.1|WP_150610283.1|5449913_5450582_-|peptidase-S8-and-S53-subtilisin-kexin-sedolisin
MDSTLRIGFVDSGFAPHQAARVSHARRFWLQHEVLEQGEPLPDALGHGTAVLDALSSPAERACIYSAQVFAGHWQTSPLQIAAALYWLLEQDVRLINLSLGLRSDRPVLRETCAELQAAGVILCAASPAQGEPVYPASYPGVIRISGDARCQAGQWSWLNSAQADFGAQVRGSSGLAGASLACAALSGQIAGYLAQHRSADRQAVYDWLRHEAAHLGPERRR
>NZ_LR130779.1|WP_150609845.1|5448615_5449917_-|FAD-dependent-oxidoreductase
MNAPRIAVLGAGPAGCAVALGLQRLGYRVWVISEWRRFAAVEGVSARVLEGLRQVGLHQALASAAPPTPRRVRWSGVDQLLNDERLLDRPLFDAALRRDLADAGVELLQGRIRQLGQQGEQQRIVLEDGRSLLADFLVEARGRQAPLGEGRLRGPETLSLLSSWQAEPDRAGSAVESLADGWAWMAALADGRCYWQITLDAAAAELPPRDELPAYCAARRQASALVRALFGDSANAAAPVHARSSTAILPRQVVGPGWIRVGDAAMAVDPLSGNGVFQSLSSALQAPAVINTLLQHPERTQLACRFHQQRIEHLFMRFARTGRDFYTAEPRWADAAFWRARRGWPDAQPLHVDADIARLQVASMPVLNDGLIDEAEVVLTADQPLGIWHIDGVALAPIVRSLQAGRLQAALAALAPASRRTVQGWLLQQGYRP
>NZ_LR130779.1|WP_150609842.1|5447106_5448600_+|aldehyde-dehydrogenase-family-protein
MFADLPVLPQTHAFLNRKLQMLIGAEWCDAISGATLDFRNPATGEIIGQVPSASADDVDRAVRAARQAFDDSAWSRTRPRDRQNLLWRLAELMERDAQQLAELECLNNGKSAAVAQVMDVQLAIDFLRYMAGWATKIEGSTVEPSLPLMPGEDFHGFIRREAVGVVGAIVAWNFPLLLACWKLGPALATGCTLVLKPADETPLTALKLAELVLEAGYPAGVFNVVTGTGLNAGVALTRHPGVDKLTFTGSTEVGKQIGKAAMDNMTRVTLELGGKSPTIVMPDANLAEAAAGAASAIFFNQGQVCCAGSRLYVHRKHFDNVVADIAGIANGMKLGNGLDPSVQMGPLISARQQERVTGYIDLGRELGATIACGGEGFGPGYFVKPTVIVDVDQQHRLVQEEIFGPVLVAMPFEDIDEVVRLANDNPYGLGASIWSNDLASVHRMIPRIKSGSVWVNCHSALDPALPFGGYKLSGVGREMGAAAIDHYTELKSVLIKL
>NZ_LR130779.1|WP_150609857.1|5460866_5461766_+|hydroxymethylglutaryl-CoA-lyase
MNLPHSVRLVEVGPRDGLQNEKQPISVADKVRLVDDLSAAGLRYIEVGSFVSPKWVPQMAGSAEVFSGIQRRPGITYAALTPNLKGFEAALEAKVEEVAVFAAASEAFSQKNINCSIADSLQRFVPLLEAAKAAKVRVRGYVSCVLGCPYDGDVAPQQVAAVARELHAMGCYEVSLGDTIGTGTAGKTRALLDVVSRDVPRERLAGHFHDTYGQALANIYASLLEGISVFDSSVAGLGGCPYAKGATGNVASEDVLYLLQGLGIDTGVDMDRLIAAGQRICQVLGKANGSRVARARLSH
>NZ_LR130779.1|WP_150609859.1|5461837_5463793_+|acetoacetate--CoA-ligase
MPQPLWRPCAERVAASRMEALRHFVNDRHALQLADYPALHAWSVAQREAFWQAIADVFDVRWHARAECVLHEGPAMPDAQWFPGATLNFAEHLLRRRDGHPALVAVSEDGRREQLSYAQLAAHVAGLQRSLRDAGVRVGDRVAAFMPNTWQTVVGMLASASLGATWSSCSPDFGSQGVIDRFGQIEPKVLIAAAGYRYAGKDLDLSAKLGEILERLPSLEQLLIVPYTRLQASPEDYRSSAQVSLWQDFYQPGGAPQFVPLAFSQPLYILYSSGTTGVPKCIVHGVGGTLLQHLKELGLHTDLGAGDTLFYYTTCGWMMWNWLVSGLALGATLVLYDGSPLHPEPTRLIDLIDAEGISVFGSSAKFIAALEKAGVKPRESHRLTTLRTLLSTGSPLAHESFDYVYRDVKRDVCLSSISGGTDIVSCFALGNPTLPVWRGELQCKGLGMDVQVWDEDARPLHGAKGELVCARHFPSMPLGFWNDADGERFRSAYFTTFPGVWAHGDYAEETAHGGLIIHGRSDAVLNPGGVRIGTAEIYRQVEKVPSVLESIAIGQEWDGDVRVVLFVRLRDGATLDDALRDEIRQVIRANTTPRHVPARIVQVADIPRTISGKIVELAVRNVVHGRPVKNTDALANPQALELYRDLAQLQN
>NZ_LR130779.1|WP_134676712.1|5464061_5464820_+|transporter-substrate-binding-domain-containing-protein
MFTVPHFKHLLFVLTLCAAVCAAAAGPVKLYLPDAPPLTFHDYEGGNGMVGDVVLAAAARSGRLTEIIAEPWLRAQATVSKGKDLLIIPLSRTPQREARYTWIAPIMLLERAFFSLDEPVASFAEARRRYQRIGVGLGTAQVETLRREGFAEQQIVQIRLGENPARLLELRRIDAWFTGIDEALYIWHKSAARRHELRMSPPLASTDLYLACSLDCDRQLVTQLRDAIAQLDHDGVSQRLRQAYRPMLWPTP
>NZ_LR130779.1|WP_134676845.1|5464816_5466022_-|PilT/PilU-family-type-4a-pilus-ATPase
MLKVLSTQDGSDLYLSTGAPPCAKFNGVLKALSQEPLKAGDVAAIADSVMDSAQREEFERELEMNLAISLAGVGRFRINIFKQRNEVSIVARNIKMEIPRFEDLKLPEVLLSTVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIEDPVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRIINFFPEERRPQLLNDLGNNLKAFVSQRLVKTIDGKRRAAVEVMLGTPTVRDLIKRNEFSELKEIMEKSKNLGMQTFDQALIDLVHDGAIDEEEAVKNADSANNVRLKLKLYRDNPANAKPAPVAAAPVAAPAAAPKAAEAGDWGLELKLEDIEEEQPPEDPGRQGI
>NZ_LR130779.1|WP_017362973.1|5466185_5466464_+|peptidyl-prolyl-cis-trans-isomerase
MAKAMARHILVKTEAEAAALKKRIAAGEAFDVLARKHSTCPSGKKGGDLGEVRPGQMVRAVDQVIFKKALREVHGPVKTQFGYHLIQVFYRD
>NZ_LR130779.1|WP_150609861.1|5466471_5467383_-|LysR-family-transcriptional-regulator
MNRNDLRRVDLNLLVIFETLMFEKNLTRAAEKLFLGQPAVSAALARLRDLFDDPLLVRNGRGFEPTARALAILQELQPAMDTISGAVSRAREFNPATNRDTFRIGLSDDAEFGLFPALLNQLREEAPEVVIVVRRVNFLLMSSMLASGEISVGVSYTTELPANAKRRKLREMRVKVLRGDERPGPLTLDEYCARPHALVSFSGDLCGNIDNDLARLDRSRRVVLAVPQFSGLRSIIAGTEMLATVPDFAAAALIEGTSLRADDPPFELVNSDLSMVWSGVTDNDPAERWIRSKIVEFMGEPGA
>NZ_LR130779.1|WP_150609863.1|5467448_5467928_-|DUF1348-family-protein
MSSNDEIRPPLPPFTRESAIEKVRLAEDGWNSRDAAKVAKAYSLDTRWRNRAEFVDGRSQAQAFLERKWAKELEYRLIKELWAFTDNRIAVRYAYEWRDDSGNWFRSYGNENWEFGADGLMVNRYACINDLPITEAERKFRWPQGRRPDDHPGLSELGL
>NZ_LR130779.1|WP_150609865.1|5467962_5468529_-|TetR-family-transcriptional-regulator
MLEDASIQQRLLQTTESLIYAGGINATGMDAIVKASGVARKSIYRLYPTKEALVAAALRARDERWMRWFIDGTSSGEPRARLLAIFPLLRSWFESADFRGCAFINAAGETGDPSSEIRAVARLHKQRLLGYLNEITAACGLADAAGVARQLLLLIDGATAVAMVTGQSDAADCAGQTASMLLQTHNAQ
>NZ_LR130779.1|WP_134676715.1|5468643_5469564_-|LysR-family-transcriptional-regulator
MDRFDAMQAFARVVETGSFTKAASTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAAYYERVVRLLADVDDAETSLSSAAMAPRGRLRVDVPSPFARMLLIPALPAFYARYPEIQLTLGVSDRIVDIIGENVDCVVRGGEITDQSLIARHVGDLQLGIYATPGYLQRSGTPGHPRELEEAGHSTVGFLWSRTGRALPYAMQRGDERIEAQGRPLLTVDDGNAYLAAGLAGLGMLWLPHYMAAPHLASGELVRLFEDWQMAPMPMYLAFAPNRHVSAKLRVFIDWVVALMAEHTPLSAHR
>NZ_LR130779.1|WP_037047879.1|5469705_5470101_+|RidA-family-protein
MNPKRDVVFPADRHALYELHRYSPAVRSNGFLFVSGQVGSRKDGSPEPVLEEQVRLAFSNLNAILAAAGSSFDDVVDTTIFMVDPHSRFETIWEVAAEYWGEAPYSTATAIGVTWLAGFDFEIKVIAKLPE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

653263 : 665672

uncultured_Mediterranean_phage(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037053238.1\|653263_654307_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.6e-113	61.7
WP_037053239.1\|654392_654893_-	CinA family protein	B5TK85	Pseudomonas_phage	8.8e-56	72.9
WP_150605807.1\|655003_656308_+	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	2.8e-21	44.8
WP_150605809.1\|656399_658967_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.7e-25	23.2
WP_037053831.1\|659106_659430_+	ferredoxin family protein	NA	NA	NA	NA
WP_150605811.1\|659700_660903_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	1.4e-112	55.4
WP_037053828.1\|661259_662267_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	2.0e-35	36.1
WP_037053846.1\|662368_663199_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.8e-13	34.4
WP_150605813.1\|663284_664223_-	DUF368 domain-containing protein	NA	NA	NA	NA
WP_167494371.1\|664248_664884_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.6e-40	51.7
WP_037053820.1\|664922_665672_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-64	51.0

DBSCAN-SWA_2

1131650 : 1152112

Pseudomonas_phage(50.0%)

holin,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167519186.1\|1131650_1133522_-	hypothetical protein	X5IEJ9	Pseudomonas_phage	3.2e-90	35.7
WP_150606230.1\|1133524_1134466_-	hypothetical protein	A0A0S3UFX4	Pseudomonas_phage	4.2e-83	52.1
WP_150606232.1\|1134467_1136363_-	hypothetical protein	X5IGB8	Pseudomonas_phage	8.5e-59	30.3
WP_150606234.1\|1136362_1136803_-	hypothetical protein	A0A0S3UFU9	Pseudomonas_phage	1.2e-24	47.2
WP_150606236.1\|1136813_1137332_-	hypothetical protein	X5HZQ0	Pseudomonas_phage	2.6e-50	57.1
WP_150606238.1\|1137321_1138518_-	hypothetical protein	X5I2K2	Pseudomonas_phage	1.0e-97	46.5
WP_150606240.1\|1138656_1139106_+	hypothetical protein	NA	NA	NA	NA
WP_167519187.1\|1139173_1139635_-	hypothetical protein	NA	NA	NA	NA
WP_167519188.1\|1139631_1140237_-	hypothetical protein	NA	NA	NA	NA
WP_150606244.1\|1140236_1140914_-	hypothetical protein	Q8HA60	Vibrio_phage	1.3e-14	33.9
WP_150606247.1\|1140917_1141601_-	hypothetical protein	NA	NA	NA	NA
WP_150606249.1\|1141611_1142073_-	hypothetical protein	NA	NA	NA	NA
WP_150606251.1\|1142069_1142681_-	hypothetical protein	NA	NA	NA	NA
WP_150606253.1\|1142691_1143216_-	hypothetical protein	NA	NA	NA	NA
WP_167519189.1\|1143212_1143707_-	hypothetical protein	NA	NA	NA	NA
WP_150606257.1\|1143703_1144258_-	glycoside hydrolase family protein	I6X6V3	Burkholderia_virus	4.7e-58	62.0
WP_150606259.1\|1144254_1144521_-\|holin	holin	A0A0U1UNM6	Pseudomonas_phage	6.0e-19	61.3
WP_150606261.1\|1144598_1145255_-	hypothetical protein	Q5QF47	Pseudomonas_virus	2.3e-56	51.1
WP_150606263.1\|1145251_1146094_-	hypothetical protein	L7TJQ0	Pseudomonas_virus	4.9e-59	44.6
WP_150606265.1\|1146159_1146633_-	hypothetical protein	NA	NA	NA	NA
WP_150606268.1\|1146695_1147979_-\|capsid	N4-gp56 family major capsid protein	L7TIC0	Pseudomonas_virus	4.8e-138	56.2
WP_150606270.1\|1148006_1149047_-	hypothetical protein	Q5QF43	Pseudomonas_virus	2.3e-50	46.6
WP_150606272.1\|1149249_1149840_+	hypothetical protein	NA	NA	NA	NA
WP_150606274.1\|1149817_1152112_-	hypothetical protein	Q5QF74	Pseudomonas_virus	4.9e-295	66.3

DBSCAN-SWA_3

1157048 : 1182342

Pseudomonas_phage(54.55%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150606286.1\|1157048_1157630_-	hypothetical protein	A0A0P0ZBS0	Stx2-converting_phage	3.6e-32	41.3
WP_150606288.1\|1157622_1158753_-	hypothetical protein	A0A2D1GMY5	Marinobacter_phage	1.4e-13	55.3
WP_150606291.1\|1158769_1159129_-	hypothetical protein	NA	NA	NA	NA
WP_167519232.1\|1159121_1159712_-	recombination protein NinG	A0A059VA66	Pseudomonas_phage	7.2e-73	64.4
WP_150606293.1\|1159758_1160430_-	hypothetical protein	A0A2I7RKD9	Vibrio_phage	4.2e-29	40.0
WP_150606295.1\|1160426_1160708_-	hypothetical protein	NA	NA	NA	NA
WP_150606297.1\|1160704_1161271_-	hypothetical protein	A0A0U1W0G1	Pseudomonas_phage	9.4e-54	60.2
WP_150606299.1\|1161263_1161578_-	hypothetical protein	NA	NA	NA	NA
WP_150606301.1\|1161570_1161909_-	hypothetical protein	NA	NA	NA	NA
WP_150606303.1\|1161905_1162271_-	hypothetical protein	NA	NA	NA	NA
WP_158675464.1\|1162267_1162441_-	hypothetical protein	NA	NA	NA	NA
WP_150606305.1\|1162430_1163180_-	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	8.6e-39	46.7
WP_150606307.1\|1163176_1164157_-	DUF1376 domain-containing protein	H2BD69	Pseudomonas_phage	2.1e-69	70.5
WP_150606309.1\|1164143_1164332_-	hypothetical protein	NA	NA	NA	NA
WP_167519190.1\|1164351_1164525_-	hypothetical protein	NA	NA	NA	NA
WP_150606311.1\|1164567_1164771_-	Cro/Cl family transcriptional regulator	A0A2H4J1L8	uncultured_Caudovirales_phage	5.2e-07	46.2
WP_150606313.1\|1164881_1165670_+	helix-turn-helix domain-containing protein	H2BD63	Pseudomonas_phage	2.0e-38	36.2
WP_150606315.1\|1165673_1166054_+	hypothetical protein	NA	NA	NA	NA
WP_150606317.1\|1166330_1166681_+	hypothetical protein	NA	NA	NA	NA
WP_167519191.1\|1166677_1166830_+	hypothetical protein	NA	NA	NA	NA
WP_150606319.1\|1166822_1167074_+	hypothetical protein	NA	NA	NA	NA
WP_167519192.1\|1167066_1167207_+	hypothetical protein	NA	NA	NA	NA
WP_150606321.1\|1167307_1167538_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_150606323.1\|1167550_1168213_+	hypothetical protein	A0A1Y0T023	Pseudomonas_phage	1.6e-28	53.3
WP_150606325.1\|1168209_1169808_+	Heme peroxidase	A0A2H4J6P1	uncultured_Caudovirales_phage	6.6e-129	58.0
WP_150610103.1\|1169888_1170461_+	3'-5' exonuclease	L7TH68	Pseudomonas_virus	2.3e-68	68.6
WP_150606327.1\|1170471_1170966_+	hypothetical protein	J7I0S8	Pseudomonas_phage	2.7e-49	61.4
WP_150606329.1\|1170981_1171395_+	hypothetical protein	NA	NA	NA	NA
WP_150606331.1\|1171405_1172644_+	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	4.8e-119	71.6
WP_150606333.1\|1172636_1173329_+	hypothetical protein	NA	NA	NA	NA
WP_150606335.1\|1173325_1173577_+	hypothetical protein	NA	NA	NA	NA
WP_150610108.1\|1173588_1174698_+	site-specific DNA-methyltransferase	A0A1B0VM49	Pseudomonas_phage	1.1e-133	67.3
WP_150606337.1\|1174694_1175921_+	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	3.5e-178	73.9
WP_150606339.1\|1175934_1178031_+	DNA cytosine methyltransferase	J7HXB9	Pseudomonas_phage	4.4e-242	63.0
WP_150606341.1\|1178027_1178495_+	hypothetical protein	NA	NA	NA	NA
WP_150606343.1\|1178497_1178746_-	hypothetical protein	NA	NA	NA	NA
WP_150606345.1\|1178919_1179102_+	hypothetical protein	NA	NA	NA	NA
WP_150606347.1\|1179181_1179892_+	hypothetical protein	A0A2H4J7W7	uncultured_Caudovirales_phage	4.7e-10	52.7
WP_150606349.1\|1179895_1180663_+	DUF4406 domain-containing protein	V5JVS6	Pseudomonas_phage	5.2e-31	77.0
WP_167519193.1\|1180665_1180830_+	hypothetical protein	NA	NA	NA	NA
WP_150606351.1\|1180819_1181290_+	hypothetical protein	H2BD44	Pseudomonas_phage	2.4e-18	42.9
WP_150610113.1\|1181328_1181709_+	DUF4406 domain-containing protein	A0A0U4IBL4	Pseudomonas_phage	3.7e-22	55.8
WP_003298189.1\|1182129_1182342_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.7e-16	69.0

DBSCAN-SWA_4

2499639 : 2561846

Synechococcus_phage(20.0%)

holin,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047592741.1\|2499639_2500572_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_013713230.1\|2500628_2501135_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.9e-18	40.7
WP_037052257.1\|2501288_2502326_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_150607367.1\|2502412_2503528_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.3e-27	38.2
WP_047585274.1\|2503790_2504348_+	L-threonylcarbamoyladenylate synthase	NA	NA	NA	NA
WP_150607369.1\|2504413_2505391_-	NADPH:quinone reductase	NA	NA	NA	NA
WP_150607371.1\|2505539_2506457_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_150607373.1\|2506617_2507439_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_037052242.1\|2507449_2507800_+	DOPA 4,5-dioxygenase family protein	NA	NA	NA	NA
WP_134676647.1\|2507832_2509404_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_150607375.1\|2509462_2510383_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_150607377.1\|2510433_2511942_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_037052233.1\|2512055_2512976_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_037052230.1\|2513067_2513970_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_150607379.1\|2514050_2514974_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_150607381.1\|2515197_2516001_+	2,5-didehydrogluconate reductase DkgB	A0A2H4PQR8	Staphylococcus_phage	2.9e-40	37.5
WP_150607383.1\|2516080_2518288_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_037052378.1\|2518423_2519371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_037052211.1\|2519461_2520205_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_037052208.1\|2520438_2521881_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.9e-88	42.3
WP_150607385.1\|2522028_2522631_+	transcriptional regulator	NA	NA	NA	NA
WP_047588709.1\|2522620_2523055_+	hypothetical protein	NA	NA	NA	NA
WP_134676655.1\|2523196_2524006_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_150607387.1\|2524002_2525214_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_150607389.1\|2525335_2526223_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_037052375.1\|2526344_2526866_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_150607391.1\|2526862_2527804_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_150607393.1\|2527920_2530308_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_134676660.1\|2530427_2530934_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_150607395.1\|2530930_2531878_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_150607397.1\|2532508_2534941_+	TonB-dependent receptor	NA	NA	NA	NA
WP_037052187.1\|2535074_2535290_+	dodecin family protein	NA	NA	NA	NA
WP_037052182.1\|2535258_2536236_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_037052179.1\|2536454_2537033_+	hypothetical protein	NA	NA	NA	NA
WP_150607399.1\|2537039_2538269_-	spore maturation protein	NA	NA	NA	NA
WP_150607401.1\|2538343_2538805_-	hypothetical protein	NA	NA	NA	NA
WP_037052169.1\|2538815_2538980_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_037052167.1\|2538999_2539197_-	hypothetical protein	NA	NA	NA	NA
WP_021442733.1\|2539562_2539967_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_037052165.1\|2540045_2541146_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_037052162.1\|2541390_2541936_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_037052157.1\|2541928_2543305_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_150607403.1\|2543410_2544313_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_134676666.1\|2544748_2546311_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_037052146.1\|2546365_2546872_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_037052143.1\|2546897_2548376_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_037052140.1\|2548382_2548808_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_134676667.1\|2548797_2549301_+	hypothetical protein	NA	NA	NA	NA
WP_134676688.1\|2549507_2550137_+	hypothetical protein	NA	NA	NA	NA
WP_134676668.1\|2550126_2550468_+	hypothetical protein	NA	NA	NA	NA
WP_134676669.1\|2550658_2551048_+	hypothetical protein	NA	NA	NA	NA
WP_150607405.1\|2551172_2551706_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_134676672.1\|2551705_2553496_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_150607407.1\|2553459_2554467_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_150607409.1\|2554478_2557091_+	type VI secretion system ATPase TssH	A0A0A8J958	Klebsiella_phage	5.8e-90	30.2
WP_134676674.1\|2557101_2558631_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_037052120.1\|2558678_2558813_+	hypothetical protein	NA	NA	NA	NA
WP_037052117.1\|2558833_2560030_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_037052114.1\|2560035_2560518_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_037052112.1\|2560514_2561846_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_5

3042893 : 3120091

Moumouvirus(11.11%)

transposase,tRNA,protease,integrase

attL 3085744:3085760|attR 3113886:3113902

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037049870.1\|3042893_3043424_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_037049868.1\|3043519_3044194_-	cell division protein	NA	NA	NA	NA
WP_150607751.1\|3044194_3045934_-\|tRNA	arginine--tRNA ligase	M1PAX3	Moumouvirus	1.2e-83	35.9
WP_150607753.1\|3046070_3048290_-	primosomal protein N'	NA	NA	NA	NA
WP_003459015.1\|3048448_3048661_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_150607755.1\|3048687_3049488_+	thermonuclease family protein	NA	NA	NA	NA
WP_150607757.1\|3049484_3050921_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_037049853.1\|3051024_3052293_+	malate dehydrogenase	NA	NA	NA	NA
WP_150607759.1\|3052377_3054789_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_037049850.1\|3054969_3056034_+	pilus assembly protein PilM	NA	NA	NA	NA
WP_150607767.1\|3056033_3056606_+	type 4a pilus biogenesis protein PilN	NA	NA	NA	NA
WP_150607769.1\|3056602_3057223_+	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA
WP_150607772.1\|3057222_3057747_+	type 4a pilus biogenesis lipoprotein PilP	NA	NA	NA	NA
WP_150607774.1\|3057803_3059918_+	type IV pilus secretin PilQ	R9TEZ5	Vibrio_phage	3.3e-19	25.4
WP_134676110.1\|3059923_3060442_+	shikimate kinase AroK	NA	NA	NA	NA
WP_150607776.1\|3060493_3061597_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_150607778.1\|3061607_3063188_+	AAA family ATPase	NA	NA	NA	NA
WP_150607780.1\|3063428_3067877_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_150607782.1\|3067995_3069414_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_150607784.1\|3069398_3071321_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_150607786.1\|3071588_3072956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_047591924.1\|3072955_3073792_+	nitrate ABC transporter permease	NA	NA	NA	NA
WP_150607788.1\|3073796_3074705_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.8e-31	36.8
WP_150607790.1\|3074697_3075138_+	cyanase	NA	NA	NA	NA
WP_150607792.1\|3075242_3076310_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_037049817.1\|3076345_3076777_-	hypothetical protein	NA	NA	NA	NA
WP_037049815.1\|3076922_3077693_+	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	3.5e-11	28.1
WP_037049814.1\|3077735_3078533_-	universal stress protein	NA	NA	NA	NA
WP_150607794.1\|3078655_3079099_-	DUF4442 domain-containing protein	NA	NA	NA	NA
WP_037049812.1\|3079191_3079626_-	thioredoxin TrxC	A0A146JH34	Tokyovirus	7.2e-14	37.3
WP_047591911.1\|3079685_3081476_-	SLC13 family permease	NA	NA	NA	NA
WP_150607796.1\|3081653_3083117_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	2.5e-58	35.3
WP_150607798.1\|3083064_3086484_-	mechanosensitive channel MscK	NA	NA	NA	NA
3085744:3085760	attL	NA	NA	NA	NA
WP_037049802.1\|3086598_3088344_-	potassium/proton antiporter	NA	NA	NA	NA
WP_150607800.1\|3088538_3090344_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_037049798.1\|3090465_3091518_-	nitronate monooxygenase	NA	NA	NA	NA
WP_150607802.1\|3091508_3092699_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_150607804.1\|3092793_3093681_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_037049794.1\|3093707_3094562_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_150607806.1\|3094631_3095885_-	DUF3391 domain-containing protein	NA	NA	NA	NA
WP_134676063.1\|3095946_3096144_-	putative motility protein	NA	NA	NA	NA
WP_150607808.1\|3096699_3097821_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_003246635.1\|3099610_3099874_+	hypothetical protein	NA	NA	NA	NA
WP_023118217.1\|3099866_3101738_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_071535013.1\|3101757_3102201_+	hypothetical protein	NA	NA	NA	NA
WP_150607811.1\|3102384_3103365_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	5.0e-95	57.7
WP_003118432.1\|3103826_3104654_+	phosphonate ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.4e-07	25.7
WP_010466255.1\|3104650_3105514_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010466252.1\|3105522_3106350_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_003118429.1\|3106358_3107369_+	phosphonate dehydrogenase PtxD	NA	NA	NA	NA
WP_015275427.1\|3107362_3108232_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023118212.1\|3108662_3109289_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_015275429.1\|3109366_3109663_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_031642520.1\|3109766_3110222_+	hypothetical protein	NA	NA	NA	NA
WP_150607813.1\|3110720_3115142_+	NACHT domain-containing protein	NA	NA	NA	NA
3113886:3113902	attR	NA	NA	NA	NA
WP_015275433.1\|3115141_3116584_+	hypothetical protein	NA	NA	NA	NA
WP_015275434.1\|3116772_3117087_+	hypothetical protein	NA	NA	NA	NA
WP_150607815.1\|3117124_3120091_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	97.7

DBSCAN-SWA_6

5076420 : 5135474

uncultured_Caudovirales_phage(28.57%)

tRNA,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150609543.1\|5076420_5076783_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.1e-11	43.2
WP_037055908.1\|5076812_5079083_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.4e-163	42.9
WP_002553999.1\|5079176_5079395_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_037055910.1\|5079533_5080241_-	arginyltransferase	NA	NA	NA	NA
WP_150609545.1\|5080295_5080976_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_037055914.1\|5081030_5081981_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	9.2e-62	43.6
WP_081876519.1\|5082151_5084584_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	8.0e-86	50.0
WP_037055916.1\|5084708_5085335_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_150609547.1\|5085338_5086664_+	AAA family ATPase	G3MBE0	Bacillus_virus	4.1e-76	39.8
WP_037055922.1\|5086660_5087041_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_134675870.1\|5087120_5088401_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.7e-99	54.8
WP_150609549.1\|5088509_5089898_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_150609551.1\|5089977_5090985_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_150609553.1\|5091058_5092054_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.6e-144	76.8
WP_150609555.1\|5092050_5092386_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.0e-44	78.4
WP_150609557.1\|5092382_5092682_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.4e-27	63.6
WP_150609559.1\|5092681_5093041_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.1e-34	63.3
WP_150609561.1\|5093041_5093434_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.3e-51	76.0
WP_134675866.1\|5093555_5094224_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.1e-93	82.1
WP_037056669.1\|5094648_5095293_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_150609563.1\|5095296_5097120_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_037056661.1\|5097153_5097714_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_150610262.1\|5098599_5099754_+	Fic family protein	A0A1V0E025	Clostridioides_phage	4.0e-11	25.5
WP_150609565.1\|5099898_5101260_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	4.5e-70	37.2
WP_037056659.1\|5101299_5102139_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	4.3e-63	45.9
WP_037056658.1\|5102186_5102609_-	VOC family protein	NA	NA	NA	NA
WP_150609567.1\|5102681_5104040_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	6.3e-48	27.6
WP_037056654.1\|5104047_5104671_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_037056652.1\|5104673_5105060_+	VOC family protein	NA	NA	NA	NA
WP_037056698.1\|5105161_5106034_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.3e-62	46.6
WP_156049331.1\|5106092_5106260_-	hypothetical protein	NA	NA	NA	NA
WP_150609569.1\|5106586_5107618_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_150609571.1\|5107766_5108582_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_150609573.1\|5108586_5109510_+	alpha/beta hydrolase fold domain-containing protein	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	1.3e-31	30.2
WP_150609575.1\|5109520_5110621_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	NA	NA	NA
WP_150609577.1\|5111167_5112544_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_150609579.1\|5112564_5114139_-	DUF1302 family protein	NA	NA	NA	NA
WP_150609581.1\|5114573_5115329_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	5.5e-17	31.1
WP_150609583.1\|5115346_5116990_-	FAD-binding protein	NA	NA	NA	NA
WP_037056621.1\|5116999_5117509_-	flavin reductase family protein	NA	NA	NA	NA
WP_150609585.1\|5117732_5118860_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_150610265.1\|5119040_5119211_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_081876531.1\|5119443_5119836_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_150609587.1\|5119973_5120519_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_150609589.1\|5120526_5122533_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.9e-41	30.3
WP_150609591.1\|5122582_5123152_-	hypothetical protein	NA	NA	NA	NA
WP_167519225.1\|5123246_5123936_-	hypothetical protein	NA	NA	NA	NA
WP_150609595.1\|5124082_5124868_-	hypothetical protein	NA	NA	NA	NA
WP_150609597.1\|5125040_5127587_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	2.5e-82	30.7
WP_150609599.1\|5127586_5128606_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_150609601.1\|5128569_5130357_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_150609603.1\|5130349_5130766_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_037056770.1\|5130778_5131276_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_037056768.1\|5131358_5132837_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_037056766.1\|5132866_5133418_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_134675841.1\|5133626_5134097_+	type VI secretion protein	NA	NA	NA	NA
WP_150609605.1\|5134148_5135474_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage