CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR590083	Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 chromosome 1	2 crisprs	cas6,csa3	0	0	5	0
NZ_LR699074	Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2	0 crisprs	DEDDh,csa3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR590083_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR590083_1

1329706-1329775

Orphan

Consensus_repeat	Method
CTGATTCAGGTGGCCGTTCAGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR590083_1

>merge|NZ_LR590083|1|1329706-1329775|CRISPRCasFinder
CTGATTCAGGTGCCCGTTCAGGTCGCCGTTCAGATGTCGTTCAAAACTGATTCAGTAACCCGTTCAGTAG

>NZ_LR590083|1|1|1329706-1329775|CRISPRCasFinder
CTGATTCAGGTGCCCGTTCAGGTC	GCCGTTCAGATGTCGTTCAAAA
CTGATTCAGTAACCCGTTCAGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR590083.2\|WP_138101855.1\|1332691_1334245_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_LR590083.2\|WP_138101854.1\|1330310_1331807_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_LR590083.2\|WP_138101851.1\|1328541_1328751_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR590083.2\|WP_138101856.1\|1334355_1334985_+\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|369382
NZ_LR590083.2\|WP_138101848.1\|1325172_1326390_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_LR590083.2\|WP_172627646.1\|1320836_1321574_+\|DUF2167-domain-containing-protein	unknown	unknown	gnl\|CDD\|378316
NZ_LR590083.2\|WP_138101859.1\|1336936_1337362_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NZ_LR590083.2\|WP_149996760.1\|1322652_1324221_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225186
NZ_LR590083.2\|WP_138101861.1\|1338781_1339036_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR590083.2\|WP_149996762.1\|1329039_1329309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR590083.2\|WP_138101857.1\|1334959_1335157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR590083.2\|WP_138101858.1\|1335798_1336932_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NZ_LR590083.2\|WP_138105680.1\|1331822_1332551_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_LR590083.2\|WP_138101847.1\|1324586_1325138_+\|serine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226075
NZ_LR590083.2\|WP_149996761.1\|1328161_1328545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR590083.2\|WP_138101849.1\|1326729_1327347_-\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_LR590083.2\|WP_138101860.1\|1337327_1338455_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_LR590083.2\|WP_138101844.1\|1321603_1322110_-\|damage-inducible-protein-DinB	unknown	unknown	gnl\|CDD\|225200
NZ_LR590083.2\|WP_138101853.1\|1330051_1330156_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215594
NZ_LR590083.2\|WP_138101845.1\|1322200_1322644_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380412

Protein	Function_ID	Function_description	E-value
NZ_LR590083.2\|WP_138101854.1\|1330310_1331807_+\|IS21-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.4849e-17
NZ_LR590083.2\|WP_138101845.1\|1322200_1322644_+\|cupin-domain-containing-protein	gnl\|CDD\|380412	cd07009, cupin_BLL0285-like, Bradyrhizobium japonicum BLL0285 and related proteins, cupin domain. This family includes bacterial proteins homologous to BLL0285, a Bradyrhizobium japonicum protein of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.39374e-38
NZ_LR590083.2\|WP_138101856.1\|1334355_1334985_+\|terminase-small-subunit	gnl\|CDD\|369382	pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1. Terminase, the DNA packaging enzyme of bacteriophage lambda, is a heteromultimer composed of subunits Nu1 and A. The smaller Nu1 terminase subunit has a low-affinity ATPase stimulated by non-specific DNA.	1.08842e-09
NZ_LR590083.2\|WP_138101848.1\|1325172_1326390_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.48906e-55
NZ_LR590083.2\|WP_172627646.1\|1320836_1321574_+\|DUF2167-domain-containing-protein	gnl\|CDD\|378316	pfam09935, DUF2167, Protein of unknown function (DUF2167). This domain, found in various hypothetical membrane-anchored prokaryotic proteins, has no known function.	7.47553e-45
NZ_LR590083.2\|WP_138101859.1\|1336936_1337362_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.65199e-56
NZ_LR590083.2\|WP_149996760.1\|1322652_1324221_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.43699e-72
NZ_LR590083.2\|WP_138101855.1\|1332691_1334245_-\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.57383e-46
NZ_LR590083.2\|WP_138101858.1\|1335798_1336932_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.94936e-33
NZ_LR590083.2\|WP_138105680.1\|1331822_1332551_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	6.79418e-61
NZ_LR590083.2\|WP_138101847.1\|1324586_1325138_+\|serine-hydrolase-family-protein	gnl\|CDD\|226075	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only].	9.29029e-65
NZ_LR590083.2\|WP_138101849.1\|1326729_1327347_-\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	3.90772e-109
NZ_LR590083.2\|WP_138101860.1\|1337327_1338455_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	3.35018e-45
NZ_LR590083.2\|WP_138101844.1\|1321603_1322110_-\|damage-inducible-protein-DinB	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	1.05577e-34
NZ_LR590083.2\|WP_138101853.1\|1330051_1330156_+\|hypothetical-protein	gnl\|CDD\|215594	PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.	3.78997e-07

>NZ_LR590083.2|WP_149996762.1|1329039_1329309_+|hypothetical-protein
MREEVVRRILQRIPYGTTAATISARMGLDFTKRDLYELREGNLVNISDNRLFLWAERLGVPLVLTFSDDPSLHPVHSPLPSPAVVAQAA
>NZ_LR590083.2|WP_138101851.1|1328541_1328751_-|hypothetical-protein
MNDGFLYGAAHAANRAAAAHARADLRAARRDLAAAQAEHRRALANAAARRDARQRAALDALERAVLEDR
>NZ_LR590083.2|WP_149996761.1|1328161_1328545_-|hypothetical-protein
MSARALAALALLATPASADTLPVRPGFYARADRPCATRGDAGAYAALLHVDRGGVSDSGHARRVVHVRGENGALVVDQLSEDLRAGGGPASLTWVVRVMAPTRFVVLGADGPVDLSGQYEWCGAAIP
>NZ_LR590083.2|WP_138101849.1|1326729_1327347_-|30S-ribosomal-protein-S4
MTKRAESKYKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLKAKQKLKGYYGNISEKQFRKYYAEAIRMKGDSGDNLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVKVNGRRVNIASYQVKVGDLVEVKDSSRELAIVIESTQLAERDVPDFYEADHSKMNAKLTRIPLPSEVPYPVMMEPNLVIEFYSR
>NZ_LR590083.2|WP_138101848.1|1325172_1326390_+|serine-hydrolase
MSIDTEVADVAGFSGARLARIDNFFNVEVARGAVPGAVLHVERAGEVVMRRVWGYRNRAAGTPMTTDSIFRIYSMTKPMVSFVTLMLAAEGRLYLDQPIADFVPAFAYVRVLADDGRVSPRRAPTIHDLLRHTAGLVYERNGGPVAELYAGVMDGDPTNEAFADRIARLPLAHQPGTVWEYSHATDVLGRVVEVAAGRSLSGVLRQRLLEPLGMADTGFSVPRDEDHARIAEPFPDDRFSENGPPMFNPRKPRAFEAGGMGLVSTLDDYARFCRLLLEEGTLDGRTYLSREMLRFMASDHVGPETGITRLPGSILDPGFGFGLGVSVRLGRGAVPAPGSKGEFGWSGIGGTYFWIDPRDETFGILLTQSPRQRSRHRMILRTMLADADVGARALKAERKRAKQEA
>NZ_LR590083.2|WP_138101847.1|1324586_1325138_+|serine-hydrolase-family-protein
MRTSDVDIVIAPGIGGGTDEHWYSRWEAKLPTARRIVQADWDHPTLAAWTRELVDAVEAAGKPVVLVGHSLGVRTIAHAADRIAERVVGAFLVAPPAARALREIPEIDLAFRDDRATTLPFPAVLVASRDDPYCTYAEAEALATAWGATLVDAGTSGHLNHESGHGPWPEGLMRFAGFLKSLS
>NZ_LR590083.2|WP_149996760.1|1322652_1324221_+|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
MATHYDIIVVGSGPGGASLAQRLAPTGKKILMLERGGYLPREQRNWDSKAVFVDGIYQTTDTWYGADGKTFQPGLHRWVGGNSKLYGAALLRLREKDFGEVRHHDGISPAWPLGYDVFEPYYTEAERLFHVHGLRGEDPLEPWASAPYAFPPVSHEPRIQELADGLTAQGLHPFHLPLGILLDEKDGKPTQTSPCIRCDAFDGFSCILNAKADAQVICVDPTLKLHPENFTLLTHALVTKLETDPSGRSISGVHVVRDGVAETYTADIVVVACGALSSALLLLASANDRHPKGLANGSDQVGRNYMRHNMSVMMAVLRKPNHTQFQKTLALSDFYFGSPETEYPLGLIQMCATSHADQIRGEAPLSKLMQLLPSMPFEVMATHSMDFWLQTEDLPNPDNRIYFDGDKIVLALEESNAVEAKGLKHKLHQILNASGETPLFVERSLYLGKNIPVGGTAHQAGTLRFGTDPKTSVLDLDCKAHEIDNLYVTDASFFPSIGAVNPTLTIIANALRVADRIKERMG
>NZ_LR590083.2|WP_138101845.1|1322200_1322644_+|cupin-domain-containing-protein
MSDAGQKPKMPYWHVYTDADGISRQQKFELENFELKGIDPQTAPQWNDKQEKTPAIVTFTVLPVGWVGDWHENPRPQWIAVLSGRWFVETMDGTRVEMGPGELMMGEDQGTKGRKGHVSGTVGNEPCTMMVTGLVVTPTVNQPGRFK
>NZ_LR590083.2|WP_138101844.1|1321603_1322110_-|damage-inducible-protein-DinB
MISLSYVQLMAAYNAEMNRRVYAAAGRLDDAARREDRGAFWHSIHGTLSHLVWGDRMWMSRFAGWTPPPVAVSESDALFAVFEDMAAARAEDDRKIEAWAAELDEAWLEGDLTWFSGAAGRAMTKPRALLVMHFFNHQTHHRGQAHAMLTAAGETTGATDIPMIFAGY
>NZ_LR590083.2|WP_172627646.1|1320836_1321574_+|DUF2167-domain-containing-protein
MSLPQSKATIANLPDFAGVAGDDARTFRSIVDGRSDPSVEGDIIRRSNSSEILFSWHDVGYVDAKDFADIDPDKLIESVREATFAGNEESTRAGLRPITAVDWIRKPTWNENLHTAYWMMQGVHDDGERTVNAVALKLGRRGYEKMVWITSPDQIGRADDLSLVQDAYSYPSGDRYEDHATGDKVAAYGIAGLVAGVIGLKAAKVIGIGAFLLAFKKFFFLLLVPFIWVGNKIRALFRKRETGDS
>NZ_LR590083.2|WP_138101853.1|1330051_1330156_+|hypothetical-protein
MHASVFGMSGIVFVPGQGNNVYIFPAMGMAVLSR
>NZ_LR590083.2|WP_138101854.1|1330310_1331807_+|IS21-family-transposase
MLVVETVGRIRREHLVKGKSIKEIARDLKISRNTVRKVLRSGETSFAYEREVQPRPKLGRWKTDLEAMLARNATKAARERLTLIRVFEELRALGYEGGYDAVRRYARVWAKGHAAASAEAYVPLAFAPGEAFQFDWSHDIVLIGGATTTVKVAHVRLCHSRMMFVRAYPRESQEMVFDAHDRAFAFFKGACRRGIYDNMKTAVETILVGKDRGYNRRFLQMCAHHLVEPVACTPASGWEKGQVENQVGLVRERFFTPRLRVKSYDELNGMLLDRCVAYAKAHPHPEQTDRTVWEMFEAERPHLVRHAGRFDGFHALPASVSKTCLVRFDNNKYSVSASAVGRPVEIQAYADRVVIRQDGRIVAEHSRVFGRGATICDPWHYVPVLARKPGALRNGAPFKDWVLPQAIDRIRRKLAGSDDGDRQMAKILAMVLSDGLQAVESACAEALIEGVSSADVIINIVSRQRDPAPPITIMTPDALTLRHAPIADCARYDSLRRI
>NZ_LR590083.2|WP_138105680.1|1331822_1332551_+|ATP-binding-protein
MERTDILDMMGSLKLFGMRSAFDEIVTTAVKRQHEPQRLVGDLLKAEIDEKLARSIKYQMTIARLPLAKDVADFAFVGTPINEVLVRDLAGGHFIAEQRNCVLVGGTGTGKTHLAIAIARSCIRAGKRGRFFNTLDLVNRLEAETRAGRQGRLADYLTRMDFVILDELGYLPFAQSGGQLLFHLISRLYERTSVMVTTNLAFGEWPSVFGDAKMTTALLDRLTHHCDIVETGNESWRFKNRG
>NZ_LR590083.2|WP_138101855.1|1332691_1334245_-|ISL3-family-transposase
MAALRPRCLVPAGLIVESVSTEDTKTSITARATLTSQPCPSCGFASRRVHSRYRRTVADLPSSGRSVTITIVARRFRCDFASCPKQIFTERFGAEVLAPSARRTSRLEIIVHHLGLALGGRPAEGFAKRLMLPVSKDTLLRVVRRRSLEPSEPLRVVGIDDWAYRRNHRYGTIVCNLERRRVVALLPDRERATAQAWLALRPEIEIVARDRGGAYSEAVAKALPHATQVADRWHLMENASRAFLDAVRKSMREIRRAIGSTTIDPDLLTSAERLQYEGYLRREDANAAVMALATEGMPIKQIVRRTGLSRGTVRQIVRGCRSDVFRVRQSSLEAYLPLLDALWEGGCRNGAALWRQLQEKGFRGSLRVVGEWSTRRRRAEQASDKQLQRVPSARTIARMMTIGRDHLSKADAVTIAAIEAGLPTLVEARHSIDRFHSMIRRKIKDDLTPWLEMARNSLVVSFANGIAKDEAAVRAAITTSWSNGQTEGQVTRLKLVKRQMYGRAKIDLLQARLIGAA
>NZ_LR590083.2|WP_138101856.1|1334355_1334985_+|terminase-small-subunit
MAETPRKPRKPARKPATAPVAVAEVARPDFASKLRERSVGGLSDLLGIDRSTINKWVKKHGCPVVRESAGRGAGNEWKLDVAAVFAWHAKWQREQLLEATAGGEGDDPDADLKLFKLAEMAKLLVPVDEVVAMQARVYSQMRQTVMAMPSLIGRGFPGFPKERVNAAVDRADDLVGQALETFAKIQASAVPEQSDSIRIVDDAAQPPQE
>NZ_LR590083.2|WP_138101857.1|1334959_1335157_+|hypothetical-protein
MLLNLRRSRLDRVKALCATGIAFLASSEVAARDAAVPKPRVDIVDRNHDHDYEPPGSGHLRLTKL
>NZ_LR590083.2|WP_138101858.1|1335798_1336932_-|hybrid-sensor-histidine-kinase/response-regulator
MSASTILLIDDDQVDRAVVRRALIKSGLEHTLTEATDGASGHDLARLHDFDCVLLDYRLPDVDTFDLLAALIAPEGGAQAVVMLTGDADPDVAVRLIGAGALDYLTKADLTPSSLARAIRYAKARREFIAELRGARREAEEKSFALDALNRQKSLFFSILAHDLRNPFQAILGLSKTLSQAVEARDHASVEKRARAVLGSASQAADLMEGLFAWASLQMDTVATTLAEIDVEEIAMLTRSGAEVAASDKGLTIILDCDRARAIGHEGMVAAVLRNLVSNAIKFTQPGGQITICASLQSGKTEIAVFDTGIGMPPDVVADLFKLDRRSSTNGTAGERGSGLGLLLCRDLVERMGGALTVSSLVGSGTRFSFILEGAHT
>NZ_LR590083.2|WP_138101859.1|1336936_1337362_-|response-regulator
MAPTVNLLLVDDDEVDVQGLKRAFAKGKIANPITVARDGIEALEILRGENGRTKLDKPHLILLDLNMPRMNGIEFLEAIRADEDLRSALVFMVTTSKAEEDKARAYGHHVAGYIVKQDPANTFMQAVSLLEHYWRIVEFPA
>NZ_LR590083.2|WP_138101860.1|1337327_1338455_-|PAS-domain-containing-protein
MDTASLLRATADTLPGMVGYVDARHRVGFLNDEFSSWFDLRTQDVADLFGRPLSEVFSRDPFPGLEQLEMALQGTETRSEHRLTRRGSKRRDVEAFYRPHKGSDGSVLGVVVLLTDITERKRMARELAEQAKTMRRANEELEQFAYVASHDLKAPLRAIENLVGWIEEDLDAVLTADTRKNMDLLKSRVRRLESLLDDLLGYSRAGRDDAQVEDIDIGRLIADVSSMVDPPAGFMIATEGVMPSMRSAKAPLMQAFQNLIGNALKHHDHLDDGHIWIEVLEDGPMLEFAVADDGPGIPLNYRDRVFGMFQTLKPRDQIEGSGMGLAIVRKLVDRQGGRIWLDDGREQRGVTVRFTWPRNPKDMDDGADSEPTSGR
>NZ_LR590083.2|WP_138101861.1|1338781_1339036_+|hypothetical-protein
MTTDAAAPISEHDLNEKIMGLLRARKSTADARSVMLYLDKDLETTDNWRIGHFDPGTGDRYQCKLALRSIYASLSGKYHMIGES

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Crispr_ID: NZ_LR590083_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR590083_2

2785017-2785242

Orphan

Consensus_repeat	Method
GCCGCCGTCATTGCGAGCCGCCATCATTGCGAGCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LR590083_2

>merge|NZ_LR590083|2|2785017-2785242|CRISPRCasFinder
GCCGCCGTCATTGCGAGCCGCCATCATTGCGAGCCGCCGTCATTGCGAGCCGCCGTCATTGCGAGCCGCCGTCATTGCGAGCCGCCGTCATTGCGAGCCGGAGGCGAAGCAACCCAGGGGCCGACGCGGCAATCTCCTCGCATGCGACACCTGGGTTGCTTCGCTTCGCTCGCAATGACGGCCCGATTTTGCCGCCGTCATTGCGAGCCACAGGCGAGGCAACCCA

>NZ_LR590083|2|2|2785017-2785242|CRISPRCasFinder
GCCGCCGTCATTGCGAGCCGCCATCATTGCGAGCCG	CCGTCATTGCGAGCCGCCGTCATTGCGA
GCCGCCGTCATTGCGAGCCGCCGTCATTGCGAGCCG	GAGGCGAAGCAACCCAGGGGCCGACGCGGCAATCTCCTCGCATGCGACACCTGGGTTGCTTCGCTTCGCTCGCAATGACGGCCCGATTTT
GCCGCCGTCATTGCGAGCCACAGGCGAGGCAACCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR590083.2\|WP_149997018.1\|2785314_2786703_-\|ethanolamine-ammonia-lyase-subunit-EutB	unknown	unknown	gnl\|CDD\|237897
NZ_LR590083.2\|WP_172627732.1\|2786891_2787575_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_LR590083.2\|WP_138103043.1\|2797627_2799973_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_LR590083.2\|WP_138105821.1\|2779479_2780100_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_LR590083.2\|WP_172627733.1\|2792981_2794934_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_LR590083.2\|WP_138103020.1\|2778190_2779444_+\|DUF3419-family-protein	unknown	unknown	gnl\|CDD\|227670
NZ_LR590083.2\|WP_138103018.1\|2776445_2777945_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
NZ_LR590083.2\|WP_138103036.1\|2790648_2791548_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_LR590083.2\|WP_149997022.1\|2796299_2797583_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_LR590083.2\|WP_138105822.1\|2791708_2792479_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_LR590083.2\|WP_138103038.1\|2792484_2792937_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_LR590083.2\|WP_138103034.1\|2789529_2790537_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_LR590083.2\|WP_138103026.1\|2782717_2783368_-\|haloacid-dehalogenase-type-II	unknown	unknown	gnl\|CDD\|319787
NZ_LR590083.2\|WP_138103024.1\|2781917_2782721_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NZ_LR590083.2\|WP_138103013.1\|2774813_2775320_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|227295
NZ_LR590083.2\|WP_138103028.1\|2783376_2784975_-\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_LR590083.2\|WP_138103015.1\|2775457_2775622_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NZ_LR590083.2\|WP_149997021.1\|2795549_2796104_-\|fasciclin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225214
NZ_LR590083.2\|WP_138103017.1\|2775910_2776432_+\|pilus-assembly-protein-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379302
NZ_LR590083.2\|WP_138105820.1\|2773925_2774696_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472

Protein	Function_ID	Function_description	E-value
NZ_LR590083.2\|WP_149997018.1\|2785314_2786703_-\|ethanolamine-ammonia-lyase-subunit-EutB	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
NZ_LR590083.2\|WP_172627732.1\|2786891_2787575_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	5.50074e-14
NZ_LR590083.2\|WP_138103043.1\|2797627_2799973_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.37893e-118
NZ_LR590083.2\|WP_138105821.1\|2779479_2780100_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.16366e-20
NZ_LR590083.2\|WP_172627733.1\|2792981_2794934_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	5.73879e-78
NZ_LR590083.2\|WP_138103020.1\|2778190_2779444_+\|DUF3419-family-protein	gnl\|CDD\|227670	COG5379, BtaA, S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism].	7.15624e-152
NZ_LR590083.2\|WP_138103018.1\|2776445_2777945_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	4.89036e-154
NZ_LR590083.2\|WP_138103036.1\|2790648_2791548_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.5533e-27
NZ_LR590083.2\|WP_149997022.1\|2796299_2797583_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_LR590083.2\|WP_138105822.1\|2791708_2792479_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.46364e-23
NZ_LR590083.2\|WP_138103038.1\|2792484_2792937_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.54902e-55
NZ_LR590083.2\|WP_138103034.1\|2789529_2790537_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	4.39079e-172
NZ_LR590083.2\|WP_138103026.1\|2782717_2783368_-\|haloacid-dehalogenase-type-II	gnl\|CDD\|319787	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase. L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.98977e-72
NZ_LR590083.2\|WP_138103024.1\|2781917_2782721_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	8.53195e-95
NZ_LR590083.2\|WP_138103013.1\|2774813_2775320_-\|prepilin-peptidase	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	5.29326e-32
NZ_LR590083.2\|WP_138103028.1\|2783376_2784975_-\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_LR590083.2\|WP_138103015.1\|2775457_2775622_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	1.18221e-12
NZ_LR590083.2\|WP_149997021.1\|2795549_2796104_-\|fasciclin-domain-containing-protein	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	3.1369e-55
NZ_LR590083.2\|WP_138103017.1\|2775910_2776432_+\|pilus-assembly-protein-N-terminal-domain-containing-protein	gnl\|CDD\|379302	pfam13629, T2SS-T3SS_pil_N, Pilus formation protein N terminal region.	9.17056e-12
NZ_LR590083.2\|WP_138105820.1\|2773925_2774696_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	9.61424e-57

>NZ_LR590083.2|WP_138103028.1|2783376_2784975_-|threonine-ammonia-lyase,-biosynthetic
MSAPTHDYPKKILAARVYDVAIESPLDPMPRMSKRLGVPVLIKREDLQPVFSFKLRGAYNKIVSLPPEVRARGIITASAGNHAQGVALAASKLGLTATIVMPRTTPSIKVEAVRARGGDAVLFGDGFDDALAHALALVEERGLTFVPPYDDPDVIAGQGTIGMEILRQHPDPIEAIFIPIGGGGLAAGIAAFTKYLRPEIRIVGVEPDDAASMKAAIEAGSRVTLPQVGLFADGVAVRQVGAENFRVCRELLDEIVTVSTDEICAAVKDTFDDTRASTEPAGAVGLAGLKKWAQARAETGAPSTGALLTINSGANLNFDRLRHIAERSELGEQREALFAVTIPEEPGSYRAFIAALGPKPVTEFNYRYAQGRDAHVFVGLQLTDGLREKAALLKGLRDAGYGVVDLSDDETAKVHIRYMVGGRADGLPDERLFRFQFPERPGALMKFLDGLAQGWNITLFHYRNHGADYGRVLAAFSVPDREVAEFTAALDELGYPWADESENPAYRIFLNGEAHATPERKAADLEAMRALI
>NZ_LR590083.2|WP_138103026.1|2782717_2783368_-|haloacid-dehalogenase-type-II
MHKAYVFDAYGTLFDVHSAIARQKATIGPKAEAMSETWRTKQIEYTWNTSLMGRWRDFRDLTAAALDTAAALHGGLPEGLRDKLVAAYEELDAYPDVAPALRALRAAGAKTAILSNGSREMLANATRAAGLTDLLDAVISVDEVRIYKTSPRVYALVEATLGVAPGDVAFQSSNRWDVAGAKAFGFDVNWVNRTGKPDEYVDLPPDRVIGSLSELT
>NZ_LR590083.2|WP_138103024.1|2781917_2782721_-|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MSDPTTSVPSRIIAFGDGSVRDDTREVAVETPVQVAFADVPFAVMMLTPADLVDFAYGFSLTEGVIERAAQIRGVEVSPQDDGVRLRIALAGDRLHAHLARQRAMTGRTGCGVCGIDDIEALRRARAADGPAPHVSVQAIERALKALDTRQTLNIATRAVHGAAWAALDGEIAMVREDVGRHNALDKLIGAALRAEVDPTSGVVVITSRCSFEMVEKTASFGARTLVAISAPTSLAIERARALDVTLVAIARRDTLTVFHGADRLKK
>NZ_LR590083.2|WP_138105821.1|2779479_2780100_+|class-I-SAM-dependent-methyltransferase
MDRVYARQRHIYDATRKYYLLGRDELIADLDPPADAHVLEIGCGTGRNLIKIARRYPQVRLYGVDISQEMLTTAAASVARAGLASRITLAQGDATSCDPKALFGVGKFERVVISYALSMIPPWREVLRHAAGLLAPGGELHIVDFGDQARLPAAFKRLLAGWLARFHVTPRETLPAEIDAVGAALGRQVVCRPIFRGYAILARLSA
>NZ_LR590083.2|WP_138103020.1|2778190_2779444_+|DUF3419-family-protein
MTLTTQAVRRATIDGLDTAVHQSRALSKAGLLERLFTFAFRGLVYPQIWEDPVIDMEALAIQPDDHIVTIASGGCNALSYLTGNPGRISAIDLNGAHVALGRLKLAALKHLPDHASFLSFFGNAANADNIAAYRRYVLPHLDATTAAYWNGRRPHGRRRIEAFARNFYRYGLLGNFIGSGHLLGRLYGCDPSALLTARSLAEQRRIFDQKIAPIFDKGFALWLSQQPASLFGLGIPPAQYHKLAADRPGGIIAVLRHRLERLACDFDVNDNYFAWQAFGRTYATGSTSDGALPPYLQARHFDAIRDRADRLTFSQTAMTAFLRAQPAASVDCVVLLDAQDWMTDADLTELWTEITRAARPGARVIFRTAADERLLPGRIPDDLLAAWSYDEAECREWNRRDRSSIYGGFHLYRLAAA
>NZ_LR590083.2|WP_138103018.1|2776445_2777945_-|phosphomannomutase/phosphoglucomutase
MFPKPVQALRPNTYAYESSPMVKATGFREYDARWLFEKEINLMGVQALGLGLGTLIHEMGVKPELVTGHDFRSYSSSIKNALMLGLMAAGVRVHDIGLALSPMAYFAQFALDVPAVAMVTASHNDNGWTGVKMGVQRPVTFGPQEMGRLRDIVLAGDYAYRDGGSYVFENDFPAVYLSDLWNRPKLKRKLKVVAACGNGTAGAFAPKLLEALGCEVVPLDTELDFTFPRYNPNPEDLEMLHAMAAAVRESGADVGLGFDGDGDRCGVVDNHGEEIFADKIGVMLARDLSTLHPGATFVVDVKSTGLFATDPVLQRNGVKADYWKTGHSYIKRRVSDLNALAGFEKSGHFFFNAPVGRGYDDGLVTAIAVLDMLDRNPTKSMADLYAELPKTWGSPTMSPHCGDEVKYGVIDNVTKRIAAMRETGEPIIGQKIRDVTTVNGVRVTAEDGTWGLVRASSNKPELVVVVESPVSEANMRAMFAAVDGILRENPEVGAYNQTI
>NZ_LR590083.2|WP_138103017.1|2775910_2776432_+|pilus-assembly-protein-N-terminal-domain-containing-protein
MTSPKLAFKKAIGAVAALLGLAAALACTAPASARAEDAAIVGVVDQARLVKIPVGTDTLIIGNSTIADVTLLKQKGLMVLTPKAFGETNFIALDAAGNPLAASMIQVVNSTDALVVQRGMDRQSYSCAPKCQPVERLGDDDKYLSAVAAAAQAHNQRLAGATAPTQPGLMSPH
>NZ_LR590083.2|WP_138103015.1|2775457_2775622_-|Flp-family-type-IVb-pilin
MKKLFSRFAADQSGATAIEYGLIAGLIAVVIVSAVTIVGTRLNTKFIAIGNVLT
>NZ_LR590083.2|WP_138103013.1|2774813_2775320_-|prepilin-peptidase
MLQATTLLFFPMLMAFAALSDLFTMTISNRISIALVAVFVPFAWLVGLSGQDIMIHLACGFGVLVLTFGMFAFGWIGGGDAKLAAATAVWVGWQHLGDYGLYATLLGGVLTLLILALRKLPMPDYALRYAWVARLHDHKAGVPYGIALAIAGLLIYPDTGLWSAASLA
>NZ_LR590083.2|WP_138105820.1|2773925_2774696_-|Flp-pilus-assembly-protein-CpaB
MKSARLLVLVVAVAAGLGAAYMMMGTKEPPPPVQVVAPPPVINDNVLVATRDLSPGTVLANGDLRWQPWPKGQVPPGSIQQSVQPNAVQELKGLVVRSEMLSGDPVRNERLAKDAGFMSAVLPSGSRAVAIDLADQGKSAAGGFILPNDRVDVIRIFHPDDAPGAFASETILTNVRVLAVGQAVQDKAGERTVIGGTATLELTPDQAEKVVLAQRTGQLTLTLRSVADAAKIDKTADAPQTMTIIRFGNSSQSRVH
>NZ_LR590083.2|WP_149997018.1|2785314_2786703_-|ethanolamine-ammonia-lyase-subunit-EutB
MAYTQDLAGTRYIFADLRAMLAAASPQRSGDELAGVAAASVAERVAARYALADLPLKTFLTEALVPYESDEVTRLIVDTHDARAFAPLAAMTVGDLRDWLLARETDAAALTRAAPGLTPEMVAAVSKLMRNQDLIAVARKARVVTAFRTTLGLPGHIGTRLQPNHPTDDPRGIAISILDGLMYGIGDAVVGINPATDSVANASTLLHMLDTFRQDYDIPIQTCVLTHVTNAIEAMAKGAPTDLVFQSIAGTQAANEGFGVTLAILQEAREAALALNRGTVGQNVMYFETGQGAALSAGAHNGLDQQTVEARAYAVARHYEPLIVNTVVGFIGPEYLYDGKQIIRAGLEDHFCGKLLGVPMGCDVCYTNHAEADQDDMDNLAALLTVAGVTFLICVPGADDVMLNYQSLSNHDAVALRATFGLKPAPEFEAWLARIGLADDDGRLIEPRPQAGIGRLMDFASR
>NZ_LR590083.2|WP_172627732.1|2786891_2787575_+|alpha/beta-fold-hydrolase
MPDKHLVLIPALFCDEALYAPVKAELAKHATVHVIAAPRDTMEESVAAILEQAPESFIVAGTSYGASLAIEVALAAQDRVKGLWIMGSNAGAPDPDQSAGLVQGIESNTEGVIGMLAGVVAHPSNPDAIQTFKDMAARVGPEHAGKQAKSLAAKRSVEAHASTLGMPVLAIWGAEDKISPPGSARGFVADVPNAEWHEIAGCGHLPTLEKPAEVATIAGAWLDKIVA
>NZ_LR590083.2|WP_138103034.1|2789529_2790537_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MTDATVLDAKPGEASAKPKLRIFLCAPRGFCAGVVRAIDAVEQALRLYGAPVYVRHEIVHNKYVVEGLKAKGAIFVEELSEVPDTQQPVIFSAHGVPKSIPAEAGRRNFHAIDATCPLVTKVHREAQIHFKRGRQILLVGHAGHPEVVGTLGQLPEGSIILVQHPEDIDTVQVRDEANLAYVTQTTLSLDDTKQMVDKLHERFPMIVGPQKEDICYATTNRQEAVKRIAPIVDALIVVGSSNSSNSQRLKEVGERSGCPYARLVLRAQDLEWDQLSKVRTLGITAGASAPEVLVEEIMDAFAERFELEIETVSTADESVFFPLPRELRPATATAG
>NZ_LR590083.2|WP_138103036.1|2790648_2791548_+|alpha/beta-hydrolase
MPDLADLFPGFASHWIDTAAGRFFARAGGSGPPLLLLHGYPQTHVEWHKIAPRLAERFTVVAMDLRGYGWSSLPVGANGEGMAKRALAQDAIDVMEKLGHVRFSVVGHDRGGRVAYRLAYDHPGRLEKVAVIDIVPTFAMFDDMGQTEAALKKYHWLFLAQPAPFPETLIGVNARYFLEHALANWSAAKDLSAYAPEALAHYRAAFEDPTRIAASCEDYRAGALIDRLIDKADLDAGRKIEVPLLALWGDAGLPAAGASPLDVWRQYAHDVQGHAIKSGHFVPEENPDACVEALLAFLA
>NZ_LR590083.2|WP_138105822.1|2791708_2792479_+|sulfite-exporter-TauE/SafE-family-protein
MNWAYSVSGFLVGVLVGLTGVGGGSLMTPLLVLLFGIAPATAVGTDLLYAAVTKSGGIVVHGLNRTIDWAIVRRLALGSVPATALTLLYLDHIGINGHAQHSLISTVLGIALVLTAISLIFRRVLLDRFAPVMERLSERRRILLTVLLGLFLGVFVSISSVGAGAIGVTALLILYPRAQLVRIVGADIAHAVPLTLIAGLGHWYLGSVNWAVLGSLLVGSLPGIAIASQLASRAPDKVLRPIMAAILAVVGLRLAF
>NZ_LR590083.2|WP_138103038.1|2792484_2792937_-|nucleoside-deaminase
MIETAKDPMVLAFEAARDAAARGEVPVGATIVRDGRVLAVAGNRTLADRDPTAHAEMLAIRAACTALASERLVGCDLYVTLEPCAMCAAAISFARIRRLYFGCDDLKGGAVENGPRFFGQATCHHAPEVFGGIGALEAGKLLKDFFAARR
>NZ_LR590083.2|WP_172627733.1|2792981_2794934_+|pseudouridine-synthase
MTRNETENPAPARQRIAKLMARVGLCSRRDAEAWIVDGRVSVNGEVLTSPALDVSPDDTILVDGAPLPQAEKTRLFLFHKPRGLVTSDHDPEGRATVADHLREHWPDGPRVVTIGRLDINTEGLLLLTNDGGLARLLELPKTGWVRRYRVRAKGETDQSVLDGLADGITIDGIDYAGIEAKLDRQQGANVWLTMGLREGKNREVKRVLEAIGLEVNRLIRLSFGPFQLGDLPEGAVEEVRTRVLRDQLGPTLAEAAGARFEEAPAPVERKPARPDRAPARSAGGERVERSTRPSPGGRRDERPRGGDRPLARPLRGERESEAPAPIRERPKAGTRKHVSTLRAEETEATRRGPRKRIERGDLTDRRDRKVTVERLVGTHPIEPTRARDGSRPARRDDPRAAPGKPARRGASPSALAKRARAARSGGAPGEDRRPRDDAAPPRRRERPDEATRPDGATRRPAPAGGREERRDRFDAKPRPAGGRGREDDGRRAGSSGPGASRSDARPSRRGDKRPRARLERGERPDGREGSARGEARRDGSRFEGKRTERSAAPRGDGAPPPDKRRSTRGLEQGERRSAAGERPSGRSPSRSGGKPAGGRPAGGKPTGGRPGGARPAGGRPTSGRPAGGRPAGGKPRGPAGGGRGKPRPKS
>NZ_LR590083.2|WP_149997021.1|2795549_2796104_-|fasciclin-domain-containing-protein
MKFVRSTVAAASITALIGVAGPAFAKDPMVGGAPMYASKNIVENAVHSKDHTTLVAAVKAAGLVDTLEGPGPFTVFAPTNAAFKKLPAGTVDNLLKPENKDQLTAVLTYHVVPGKLTARDLEEQIKAGGGKAELKTVQGEPLTATQKGKSIIITDSKGDAASVTIPNVIQSNGVIHVINAVMLP
>NZ_LR590083.2|WP_149997022.1|2796299_2797583_-|phosphoribosylamine--glycine-ligase
MANQPLDVLLLGSGGREHAIASSLSRSPRLGRLYAAPGNPGIAEVATCVALDPQDHDAVVAFCSEKGVGLVVVGPEAPLVDGLVDDLEAAGIPAFGPSKAAARLEGSKGFTKDFCARHNIPTAAYRRCESLDAARAYLAEVGAPIVVKADGLAAGKGVAVASTTAEAEAALAAIFGGAFGAAGASVVLEAVLEGEEASFFALCDGTRALPFASAQDHKRVGDGDTGPNTGGMGAYSPAPIVDTAMQARIMREIVEPTLAGMAAEGAPFKGVLFVGLMIGRAGPQLIEFNVRFGDPETQAMLPRLEDDLLELLLACAEGRMPTRPLRFSPDVGLCVVLAARGYPGTPAKGGVITGLADLDGVVVTQAGTRREGDRLVADGGRVLGITALGRDVAAARAVAYAAVDRIDWADGFCRRDIGARALTPVNY
>NZ_LR590083.2|WP_138103043.1|2797627_2799973_-|response-regulator
MRAASAERLAGRILRNVPRSAPAARQQTQLVRRGAPNETDGGVTGSAEGRRRAAHWGRPGLALIAASVLLPIVLYALAAWYSYDETIRRAEQRVERTTRILEEHALKVFESQRLVIEQVNLRLRFMDWSKEADRVDLYKILVKLQDDLDQVSTITVADAQGRMLASGRTYPANPTISFADRDYFQTLQKGASALPTISNAYLGRQTKIPVFNVAGRIGSGGEFKGVIAVSADVSYFQDFYKSVDPDTDHRVLLVRTDGAILVSEPKLPFEHLPPTSKLLRDIQTQTSGSYSLHSQLDGVDRIFSFRRIGAYPVVVRFGIARSAALASWYSMLVIYGIAALLASLALLLASSFAVRQTQRERMARRKWEETAAALQAEAAERERIEGQLRQSQKMEAVGRLTGGLAHDFNNLLTAVIGSLDLVRRRPGGMEARNLQFIGNALEGANRAAALTSRLLAFSRQQALEPVATDANALIESMLTLLGSTLGERVRIETQLAADLRPTLVDPNQLESAIVNLAVNARDAMPEGGLIRIETANVEIADGDPEVGPGAWVLVAVSDTGTGMPPEVVAQIFEPFFTTKPVGKGTGLGLSQVYGFIKQSGGNVAVTSALGRGSTFKLYLPRAAAMEAAQSEEPWIDDAAALPMSRAGETILVVEDEEMVRQLGVAALEEAGYRVLAACDATQALALLRANADIALLFSDIVLTGPMDGRQLADVVLAERPGLPVLFTTGYSRNAIVHDGRLDEGVELINKPYTGIAVVARVKALLSQRRPRRLRLVRSTAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

210664 : 268475

Enterobacteria_phage(20.0%)

integrase,transposase,plate

attL 250189:250205|attR 268211:268227

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138104661.1\|210664_212002_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_149996540.1\|212026_213505_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_138104667.1\|213501_216201_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_149996541.1\|216221_217631_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_138104671.1\|217645_218779_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_172627552.1\|218748_219729_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_138104675.1\|219725_221528_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_138104677.1\|221534_221996_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_138104679.1\|221995_222802_-	hypothetical protein	NA	NA	NA	NA
WP_138104681.1\|222814_224257_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_138104683.1\|224267_225758_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_138104685.1\|225759_226269_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_172627553.1\|226310_227456_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_149996543.1\|227715_230463_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	4.0e-81	30.7
WP_138104691.1\|230492_230969_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_138104693.1\|231062_231464_-	DUF2177 family protein	A0A1V0SKS7	Klosneuvirus	1.8e-11	37.0
WP_138104695.1\|232045_232228_+	hypothetical protein	NA	NA	NA	NA
WP_150216681.1\|232480_232744_-	hypothetical protein	NA	NA	NA	NA
WP_172627554.1\|232877_233702_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138104699.1\|233720_234953_-	putative DNA modification/repair radical SAM protein	NA	NA	NA	NA
WP_138104701.1\|235036_236335_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-05	34.0
WP_138104703.1\|236439_237396_+	glutathione synthase	NA	NA	NA	NA
WP_138105944.1\|237453_240264_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_138105945.1\|240585_241431_+	L,D-transpeptidase	NA	NA	NA	NA
WP_138104705.1\|241493_242279_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_138104707.1\|242291_242510_-	hypothetical protein	NA	NA	NA	NA
WP_138104709.1\|242673_243606_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_138104711.1\|243613_243922_-	hypothetical protein	NA	NA	NA	NA
WP_138104713.1\|243959_244418_-	hypothetical protein	NA	NA	NA	NA
WP_138104715.1\|244523_245600_-	peptide chain release factor 1	NA	NA	NA	NA
WP_149996544.1\|245734_248467_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	8.6e-20	32.4
WP_149997281.1\|248486_249356_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_138104717.1\|249361_249961_-	cytochrome b	NA	NA	NA	NA
WP_138104719.1\|250069_250636_-	hypothetical protein	NA	NA	NA	NA
250189:250205	attL	NA	NA	NA	NA
WP_138104721.1\|250769_251015_-	acyl carrier protein	NA	NA	NA	NA
WP_149996545.1\|251011_252460_-	AMP-binding protein	A0A2K9L3I8	Tupanvirus	2.9e-22	23.3
WP_172627555.1\|252538_252697_-	DUF3309 family protein	NA	NA	NA	NA
WP_172627556.1\|252774_253383_-	DUF4142 domain-containing protein	NA	NA	NA	NA
WP_138104728.1\|253535_255152_+	glucan biosynthesis protein G	NA	NA	NA	NA
WP_138104729.1\|255203_256412_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_138104731.1\|256411_257419_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_138104733.1\|257651_257942_+	DUF4164 family protein	NA	NA	NA	NA
WP_138104735.1\|257941_258310_+	cell division protein ZapA	NA	NA	NA	NA
WP_138104737.1\|258729_260397_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_138104739.1\|260563_261283_+	hypothetical protein	NA	NA	NA	NA
WP_149996547.1\|261407_262271_+	hypothetical protein	NA	NA	NA	NA
WP_172627557.1\|262373_263480_+	AAA family ATPase	NA	NA	NA	NA
WP_149996548.1\|263583_264384_+	hypothetical protein	NA	NA	NA	NA
WP_149996549.1\|264479_265016_-	hypothetical protein	NA	NA	NA	NA
WP_138103914.1\|266918_268475_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
268211:268227	attR	NA	NA	NA	NA

DBSCAN-SWA_2

280999 : 338139

uncultured_Caudovirales_phage(33.33%)

protease,integrase,transposase

attL 266918:266977|attR 336582:338167

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
266918:266977	attL	NA	NA	NA	NA
WP_138104763.1\|280999_281905_-\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	3.7e-28	30.8
WP_149996555.1\|282449_282758_+	hypothetical protein	NA	NA	NA	NA
WP_138105680.1\|284326_285055_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	4.9e-31	34.4
WP_172627558.1\|285217_285880_+\|transposase	Mu transposase C-terminal domain-containing protein	NA	NA	NA	NA
WP_138104769.1\|285876_287058_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_138104771.1\|287064_289002_+	TniQ family protein	NA	NA	NA	NA
WP_149996556.1\|289030_289891_+	hypothetical protein	NA	NA	NA	NA
WP_149996557.1\|290424_291813_-	hypothetical protein	NA	NA	NA	NA
WP_138104777.1\|291877_292681_+	ABC transporter permease	NA	NA	NA	NA
WP_138104779.1\|292825_293389_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.9e-31	43.9
WP_138104781.1\|293697_296169_-	glycosyltransferase	NA	NA	NA	NA
WP_138104783.1\|296552_297443_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_172627559.1\|297445_298180_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_172627560.1\|298948_299107_+	hypothetical protein	NA	NA	NA	NA
WP_172627561.1\|299106_299772_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_138103914.1\|300295_301852_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_138104789.1\|302208_302781_+	CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6	NA	NA	NA	NA
WP_149996559.1\|303089_304841_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_149996560.1\|304963_305767_-	hypothetical protein	NA	NA	NA	NA
WP_138104795.1\|305859_307710_-	AAA family ATPase	A0A2K9R7H3	Dishui_lake_phycodnavirus	1.4e-05	31.5
WP_138104797.1\|307817_308468_-	hypothetical protein	NA	NA	NA	NA
WP_172627562.1\|308832_309684_+	ATP-dependent DNA ligase	A0A291AUV6	Sinorhizobium_phage	6.7e-64	45.8
WP_138104801.1\|310040_310295_-	hypothetical protein	NA	NA	NA	NA
WP_172627563.1\|310653_311103_-	DMT family transporter	NA	NA	NA	NA
WP_138104805.1\|311103_311811_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.6e-87	69.7
WP_149996561.1\|311803_312856_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_138104807.1\|312865_313291_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.0e-45	68.7
WP_138104809.1\|313290_313818_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.8e-28	45.2
WP_138104811.1\|313810_314167_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_149996562.1\|314740_315148_+	FixH family protein	NA	NA	NA	NA
WP_138105949.1\|315227_316625_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_149996563.1\|319941_320319_+	hypothetical protein	NA	NA	NA	NA
WP_138105950.1\|320900_322259_+	TolC family protein	NA	NA	NA	NA
WP_138104819.1\|322290_323694_+	copper oxidase	NA	NA	NA	NA
WP_172627564.1\|323698_324193_+	cupredoxin family protein	NA	NA	NA	NA
WP_138104823.1\|324189_324426_+	hypothetical protein	NA	NA	NA	NA
WP_138104825.1\|324451_324739_+	copper-binding protein	NA	NA	NA	NA
WP_138104828.1\|324816_325359_+	hypothetical protein	NA	NA	NA	NA
WP_138104830.1\|325399_326518_+	permease	NA	NA	NA	NA
WP_138105951.1\|326527_327283_-	cation transporter	NA	NA	NA	NA
WP_138104831.1\|327350_327770_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149996564.1\|328983_329823_-	hypothetical protein	NA	NA	NA	NA
WP_138104833.1\|329838_330630_-	hypothetical protein	NA	NA	NA	NA
WP_149997282.1\|331243_332422_+	pyrophosphatase	A0A0S2MU17	Streptomyces_phage	1.2e-05	39.8
WP_138104835.1\|332418_333129_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_138104836.1\|333102_333732_-	hypothetical protein	NA	NA	NA	NA
WP_138104837.1\|333818_334922_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_138105952.1\|335153_335804_-	peptidase C1	NA	NA	NA	NA
WP_138104838.1\|335839_336460_-\|protease	protease inhibitor I42 family protein	NA	NA	NA	NA
WP_138103914.1\|336582_338139_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
336582:338167	attR	NA	NA	NA	NA

DBSCAN-SWA_3

855340 : 865987

Ostreococcus_tauri_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149996645.1\|855340_856570_-	glycosyltransferase family 4 protein	A0A1V0SLJ0	Klosneuvirus	9.0e-09	23.7
WP_138105331.1\|856581_856824_+	hypothetical protein	NA	NA	NA	NA
WP_138105333.1\|856863_857661_+	aldolase	E5ERI3	Ostreococcus_lucimarinus_virus	2.6e-17	29.6
WP_138105335.1\|857662_858691_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_172627596.1\|858695_859409_+	SDR family oxidoreductase	A9YVT8	Ostreococcus_tauri_virus	2.2e-20	31.3
WP_138105339.1\|859392_860484_+	3-dehydroquinate synthase	A9YVT7	Ostreococcus_tauri_virus	2.5e-34	33.9
WP_138105341.1\|860480_862265_+	thiamine pyrophosphate-binding protein	G8DDL3	Micromonas_pusilla_virus	7.5e-73	31.5
WP_138105343.1\|862313_863654_+	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	2.7e-59	33.7
WP_149996646.1\|863784_864765_+	glycosyltransferase	M1FQW5	Enterobacteria_phage	1.0e-23	26.4
WP_149996647.1\|864766_865987_+	asparagine synthase (glutamine-hydrolyzing)	A0A0G2Y369	Acanthamoeba_polyphaga_mimivirus	3.7e-23	29.7

DBSCAN-SWA_4

1747849 : 1755111

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138102214.1\|1747849_1748665_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-28	32.8
WP_138102215.1\|1748664_1749429_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.0e-42	48.0
WP_138102216.1\|1749563_1749833_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-06	60.8
WP_138102217.1\|1750392_1751178_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.1e-51	42.8
WP_149997311.1\|1751460_1751886_+	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	1.3e-15	39.6
WP_138102218.1\|1752139_1752601_-	SRPBCC family protein	NA	NA	NA	NA
WP_138102219.1\|1752692_1753706_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_138102220.1\|1753799_1754690_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_138102221.1\|1754733_1755111_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	4.0e-08	45.1

DBSCAN-SWA_5

2283551 : 2332076

Erwinia_phage(16.67%)

protease,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138102633.1\|2283551_2284121_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_138102634.1\|2284117_2285215_+	hypothetical protein	NA	NA	NA	NA
WP_149996914.1\|2285211_2286513_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	4.5e-43	30.0
WP_138102636.1\|2286631_2286922_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_138102637.1\|2286928_2287429_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_149996915.1\|2287394_2288990_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.6e-42	37.0
WP_138105796.1\|2289396_2290497_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_149997318.1\|2290558_2293096_+	LPS assembly protein LptD	NA	NA	NA	NA
WP_138102640.1\|2293172_2294102_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_138102641.1\|2294098_2295124_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_138102642.1\|2295158_2296073_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_138102643.1\|2296069_2296921_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_138102644.1\|2297022_2297358_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_138102645.1\|2297359_2297713_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_138102646.1\|2297722_2298424_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_138102647.1\|2298531_2298768_-	DUF3072 domain-containing protein	NA	NA	NA	NA
WP_138102648.1\|2298916_2299603_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_138102649.1\|2299640_2300687_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_138102650.1\|2300697_2301630_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.1e-10	33.1
WP_138102651.1\|2301834_2302347_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_138102652.1\|2302555_2303119_+	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_138102653.1\|2303115_2303859_-	YfdX family protein	NA	NA	NA	NA
WP_138102654.1\|2304027_2304963_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_138102655.1\|2305074_2306118_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.5e-36	32.9
WP_149996916.1\|2306263_2307031_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_149996917.1\|2307153_2308734_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_138102656.1\|2308816_2309407_+	nitroreductase family protein	NA	NA	NA	NA
WP_138102657.1\|2309415_2310099_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_138102658.1\|2310179_2310953_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_138102659.1\|2310949_2311354_-	DUF1476 family protein	NA	NA	NA	NA
WP_138102660.1\|2311472_2311718_-	hypothetical protein	NA	NA	NA	NA
WP_138102661.1\|2311798_2312149_-	hypothetical protein	NA	NA	NA	NA
WP_149996918.1\|2312244_2312433_+	hypothetical protein	NA	NA	NA	NA
WP_149996919.1\|2312429_2313332_-	glycosyltransferase	NA	NA	NA	NA
WP_138102665.1\|2313468_2313981_+	protein tyrosine phosphatase	NA	NA	NA	NA
WP_138102666.1\|2313988_2314243_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_149996920.1\|2314362_2315724_+	amino acid permease	NA	NA	NA	NA
WP_138102668.1\|2315810_2316566_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_138102669.1\|2316592_2317465_-	ethanolamine ammonia-lyase subunit EutC	NA	NA	NA	NA
WP_138102670.1\|2317452_2317776_+	hypothetical protein	NA	NA	NA	NA
WP_138102671.1\|2317799_2318333_-	PAS domain-containing protein	NA	NA	NA	NA
WP_138102672.1\|2318490_2320320_-	hypothetical protein	NA	NA	NA	NA
WP_138102673.1\|2320617_2321376_-	response regulator transcription factor	NA	NA	NA	NA
WP_172627703.1\|2321693_2323004_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_138102675.1\|2323012_2324212_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.8e-23	33.0
WP_138102676.1\|2324208_2325066_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_138102677.1\|2325155_2326106_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149996921.1\|2326342_2328121_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_138102679.1\|2328271_2328493_+	hypothetical protein	NA	NA	NA	NA
WP_138102680.1\|2328545_2328878_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_138102681.1\|2328896_2330369_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_138102682.1\|2330408_2332076_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	2.7e-48	28.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LR699074

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1670 : 41617

Escherichia_phage(30.77%)

integrase,transposase

attL 24788:24842|attR 28135:28189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008830442.1\|1670_3332_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_008830441.1\|3331_4303_+	ExeA family protein	NA	NA	NA	NA
WP_149997353.1\|4361_5369_+	toprim domain-containing protein	A0A0H5AWB1	Pseudomonas_phage	1.3e-08	29.6
WP_149997354.1\|5694_6627_+	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_149997355.1\|6687_6918_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_149997432.1\|6923_7331_+	PIN domain-containing protein	NA	NA	NA	NA
WP_149997356.1\|7644_8826_+	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	2.4e-144	66.0
WP_149997357.1\|8881_9844_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	2.5e-62	45.0
WP_149997358.1\|10024_11257_+	replication initiation protein RepC	L7TKN6	Rhizobium_phage	8.7e-20	27.2
WP_149997359.1\|11332_11623_+	BrnT family toxin	NA	NA	NA	NA
WP_149997360.1\|11603_11885_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_149997361.1\|12080_13022_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	5.8e-32	49.7
WP_149997433.1\|13336_14437_+	DUF1612 domain-containing protein	NA	NA	NA	NA
WP_149997362.1\|14461_15895_-	hypothetical protein	NA	NA	NA	NA
WP_149997363.1\|15891_16776_-	hypothetical protein	NA	NA	NA	NA
WP_149997364.1\|17054_17546_-	hypothetical protein	NA	NA	NA	NA
WP_149997365.1\|17550_18615_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	8.8e-21	28.7
WP_149997366.1\|18853_19801_+	nucleotidyltransferase	NA	NA	NA	NA
WP_149997367.1\|19800_20295_+	hypothetical protein	NA	NA	NA	NA
WP_149997368.1\|20291_21194_+	AAA family ATPase	B2YG10	Musca_hytrovirus	9.8e-05	28.8
WP_149997369.1\|21193_22357_+	hypothetical protein	NA	NA	NA	NA
WP_149997370.1\|22353_22908_+	3'-5' exoribonuclease	NA	NA	NA	NA
WP_149997371.1\|23091_23391_+	hypothetical protein	NA	NA	NA	NA
WP_149997434.1\|23855_24017_+	DUF736 family protein	NA	NA	NA	NA
WP_149997372.1\|24143_24446_-	DUF736 family protein	NA	NA	NA	NA
24788:24842	attL	NA	NA	NA	NA
WP_149997373.1\|24909_25911_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.7e-10	29.5
WP_149997374.1\|25907_26828_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_149997375.1\|26821_28033_-\|integrase	tyrosine-type recombinase/integrase	A7XX23	Thermus_virus	5.0e-12	30.9
WP_138105680.1\|28335_29064_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.6e-32	34.3
28135:28189	attR	NA	NA	NA	NA
WP_138101854.1\|29079_30576_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-14	27.7
WP_149997376.1\|31037_31340_+	DUF736 family protein	NA	NA	NA	NA
WP_149997377.1\|31506_31671_+	DUF736 family protein	NA	NA	NA	NA
WP_149997378.1\|31748_32336_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_149997379.1\|32398_32770_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149997380.1\|33002_34472_-	PAS domain-containing protein	NA	NA	NA	NA
WP_149997381.1\|34849_35299_-	hypothetical protein	NA	NA	NA	NA
WP_149997435.1\|35295_35991_-	AAA family ATPase	A2I303	Vibrio_virus	9.8e-13	27.8
WP_149997382.1\|36714_37131_+	hypothetical protein	NA	NA	NA	NA
WP_149997383.1\|37127_39443_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_172627851.1\|39477_40059_-	autoinducer binding domain-containing protein	NA	NA	NA	NA
WP_138101854.1\|40120_41617_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-14	27.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR590083

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LR699074

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection