CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR594051	Enterococcus faecalis strain NCTC8732 chromosome 1	3 crisprs	csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	0	8	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR594051_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR594051_1

578779-579276

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	PILER-CR
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CRISPRCasFinder
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CRT

7 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_LR594051_1

>merge|NZ_LR594051|1|578779-579276|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACATCCCTCTGTACATATCAGAATATGGATCCGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTGCAGACTTTGGTGGTGCTGGTCGAAGCATGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACCGAAGCACGATTGATATTAGCGCAACTATCGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTGGCTTGTTGTTACGTGTATTACAGACGGGGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACGCACACACACGCTACTCACAGGCATTATAGGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTCATAGCAGACCAACCTGCTCCATCGCTTGGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACCAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG

>NZ_LR594051|1|1|578779-579210|PILER-CR
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	ATCCCTCTGTACATATCAGAATATGGATCC
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGCAGACTTTGGTGGTGCTGGTCGAAGCAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CGAAGCACGATTGATATTAGCGCAACTATC
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGCTTGTTGTTACGTGTATTACAGACGGG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCACACACACGCTACTCACAGGCATTATAG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCATAGCAGACCAACCTGCTCCATCGCTTG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC

>NZ_LR594051|1|1|578779-579276|CRISPRCasFinder
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	ATCCCTCTGTACATATCAGAATATGGATCC
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGCAGACTTTGGTGGTGCTGGTCGAAGCAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CGAAGCACGATTGATATTAGCGCAACTATC
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGCTTGTTGTTACGTGTATTACAGACGGG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCACACACACGCTACTCACAGGCATTATAG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCATAGCAGACCAACCTGCTCCATCGCTTG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CAATGTAAATGCTCATTATGATTTACATAT
GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG

>NZ_LR594051|1|1|578779-579276|CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	ATCCCTCTGTACATATCAGAATATGGATCC
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGCAGACTTTGGTGGTGCTGGTCGAAGCAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CGAAGCACGATTGATATTAGCGCAACTATC
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGCTTGTTGTTACGTGTATTACAGACGGG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCACACACACGCTACTCACAGGCATTATAG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCATAGCAGACCAACCTGCTCCATCGCTTG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CAATGTAAATGCTCATTATGATTTACATAT
GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR594051.1\|WP_002358653.1\|565558_566131_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223477
NZ_LR594051.1\|WP_002355517.1\|587421_589608_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_LR594051.1\|WP_002358655.1\|570553_571969_+\|dipeptidase-PepV	unknown	unknown	gnl\|CDD\|130941
NZ_LR594051.1\|WP_002381239.1\|569685_570420_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_LR594051.1\|WP_002381241.1\|579657_580671_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226122
NZ_LR594051.1\|WP_002364832.1\|578026_578686_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_LR594051.1\|WP_002364837.1\|567927_569577_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_LR594051.1\|WP_002355504.1\|572113_572347_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR594051.1\|WP_002355518.1\|589670_590012_+\|YlbF-family-regulator	unknown	unknown	gnl\|CDD\|237467
NZ_LR594051.1\|WP_002386142.1\|584008_585529_+\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|215211
NZ_LR594051.1\|WP_002364822.1\|590167_591403_+\|DNA-repair-exonuclease	unknown	unknown	gnl\|CDD\|277319
NZ_LR594051.1\|WP_002398655.1\|586215_587067_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_LR594051.1\|WP_002381242.1\|585539_586094_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_LR594051.1\|WP_002364833.1\|577696_578026_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_LR594051.1\|WP_002355507.1\|581860_583378_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_LR594051.1\|WP_002367993.1\|580906_581860_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_LR594051.1\|WP_002364834.1\|576833_577700_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_LR594051.1\|WP_002364836.1\|572819_576833_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_LR594051.1\|WP_002355509.1\|583519_583975_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
NZ_LR594051.1\|WP_002393823.1\|566197_567748_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	unknown	unknown	gnl\|CDD\|237588

Protein	Function_ID	Function_description	E-value
NZ_LR594051.1\|WP_002358653.1\|565558_566131_+\|hypothetical-protein	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	4.15912e-18
NZ_LR594051.1\|WP_002355517.1\|587421_589608_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LR594051.1\|WP_002358655.1\|570553_571969_+\|dipeptidase-PepV	gnl\|CDD\|130941	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_LR594051.1\|WP_002381239.1\|569685_570420_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.29085e-91
NZ_LR594051.1\|WP_002381241.1\|579657_580671_-\|acyltransferase-family-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	2.63008e-11
NZ_LR594051.1\|WP_002364832.1\|578026_578686_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.31098e-118
NZ_LR594051.1\|WP_002364837.1\|567927_569577_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.27874e-136
NZ_LR594051.1\|WP_002355518.1\|589670_590012_+\|YlbF-family-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	2.56028e-37
NZ_LR594051.1\|WP_002386142.1\|584008_585529_+\|phosphoglucomutase	gnl\|CDD\|215211	PLN02371, PLN02371, phosphoglucosamine mutase family protein.	0
NZ_LR594051.1\|WP_002364822.1\|590167_591403_+\|DNA-repair-exonuclease	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.06439e-49
NZ_LR594051.1\|WP_002398655.1\|586215_587067_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	4.08691e-91
NZ_LR594051.1\|WP_002381242.1\|585539_586094_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	7.67423e-25
NZ_LR594051.1\|WP_002364833.1\|577696_578026_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.08189e-44
NZ_LR594051.1\|WP_002355507.1\|581860_583378_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.06182e-168
NZ_LR594051.1\|WP_002367993.1\|580906_581860_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.78143e-140
NZ_LR594051.1\|WP_002364834.1\|576833_577700_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.59266e-115
NZ_LR594051.1\|WP_002364836.1\|572819_576833_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_LR594051.1\|WP_002355509.1\|583519_583975_+\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	1.0984e-46
NZ_LR594051.1\|WP_002393823.1\|566197_567748_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	gnl\|CDD\|237588	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase.	0

>NZ_LR594051.1|WP_002364832.1|578026_578686_+|type-II-A-CRISPR-associated-protein-Csn2
MRVNFSLLEEPIEIEKATFLTIKDVQTFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGITVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA
>NZ_LR594051.1|WP_002364833.1|577696_578026_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRLLLMFDMPTDTASDRKAYRKFRKFLINEGFIMHQFSVYSKILLNDTANKAMLARLKQNNPQRGLITLLNVTEKQFSRMIYLHGEQDNRVANSDERIVFLGEE
>NZ_LR594051.1|WP_002364834.1|576833_577700_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNKHSKLSYKNNHLVFKAIDHQELIHLSEIDVLLLETTDISLTTMLLKRLIDEKILVLFCDDKRLPIGKILPFYGRHDSSLQLTRQLAWTEERKGQVWTAIIAQKITNQSLHLAQRDYGQKAAALLAMRAELRLFDPANREGHAARSYFNTLFGNDFTREQENDINAGLNYGYTLLLSIFARELVQTGCFTQLGLKHANQFNDFNLASDLMEPFRPLVDQIIYENRKEAFPIMKRKLFALFMNTYMYKKKQMFLTNIATDYTKHVVKVLNQEEEGVPEFGI
>NZ_LR594051.1|WP_002364836.1|572819_576833_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKDYVIGLDIGTNSVGWAVMTEDYQLVKKKMPIYGNTEKKKIKKNFWGVRLFEEGHTAEDRRLKRTARRRISRRRNRLRYLQAFFEEAMTDLDENFFARLQESFLVPEDKKWHRHPIFAKLEDEVAYHETYPTIYHLRKKLADSSEQADLRLIYLALAHIVKYRGHFLIEGKLSTENISVKEQFQQFMIIYNQTFVNGESRLVSAPLPESVLIEEELTEKASRTKKSEKVLQQFPQEKANGLFGQFLKLMVGNKADFKKVFGLEEEAKITYASESYEEDLEGILAKVGDEYSDVFLAAKNVYDAVELSTILADSDKKSHAKLSSSMIVRFTEHQEDLKKFKRFIRENCPDEYDNLFKNEQKDGYAGYIAHAGKVSQLKFYQYVKKIIQDIAGAEYFLEKIAQENFLRKQRTFDNGVIPHQIHLAELQAIIHRQAAYYPFLKENQEKIEQLVTFRIPYYVGPLSKGDASTFAWLKRQSEEPIRPWNLQETVDLDQSATAFIERMTNFDTYLPSEKVLPKHSLLYEKFMVFNELTKISYTDDRGIKANFSGKEKEKIFDYLFKTRRKVKKKDIIQFYRNEYNTEIVTLSGLEEDQFNASFSTYQDLLKCGLTRAELDHPDNAEKLEDIIKILTIFEDRQRIRTQLSTFKGQFSAEVLKKLERKHYTGWGRLSKKLINGIYDKESGKTILGYLIKDDGVSKHYNRNFMQLINDSQLSFKNAIQKAQSSEHEETLSETVNELAGSPAIKKGIYQSLKIVDELVAIMGYAPKRIVVEMARENQTTSTGKRRSIQRLKIVEKAMAEIGSNLLKEQPTTNEQLRDTRLFLYYMQNGKDMYTGDELSLHRLSHYDIDHIIPQSFMKDDSLDNLVLVGSTENRGKSDDVPSKEVVKDMKAYWEKLYAAGLISQRKFQRLTKGEQGGLTLEDKAHFIQRQLVETRQITKNVAGILDQRYNANSKEKKVQIITLKASLTSQFRSIFGLYKVREVNDYHHGQDAYLNCVVATTLLKVYPNLAPEFVYGEYPKFQTFKENKATAKAIIYTNLLRFFTEDEPRFTKDGEILWSNSYLKTIKKELNYHQMNIVKKVEVQKGGFSKESIKPKGPSNKLIPVKNGLDPQKYGGFDSPIVAYTVLFTHEKGKKPLIKQEILGITIMEKTRFEQNPILFLEEKGFLRPRVLMKLPKYTLYEFPEGRRRLLASAKEAQKGNQMVLPEHLLTLLYHAKQCLLPNQSESLAYVEQHQPEFQEILERVVDFAEVHTLAKSKVQQIVKLFEANQTADVKEIAASFIQLMQFNAMGAPSTFKFFQKDIERARYTSIKEIFDATIIYQSTTGLYETRRKVVD
>NZ_LR594051.1|WP_002355504.1|572113_572347_+|hypothetical-protein
MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAMLADTTTDGLFDKIKGLFQ
>NZ_LR594051.1|WP_002358655.1|570553_571969_+|dipeptidase-PepV
MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDGFTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDKGPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFPIINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTADAVVTAASADEAASLAASFETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYSFINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTSAEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGGTYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK
>NZ_LR594051.1|WP_002381239.1|569685_570420_+|rRNA-pseudouridine-synthase
MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKFFYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAHQLLSPKKHVDKEYLAEVEGLVTAEDCQLFAQGFALKDGEIVKPSRLVIETINEEEGTSVVRLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGGYRPLTEAELQQLQPKQSYLN
>NZ_LR594051.1|WP_002364837.1|567927_569577_+|polysaccharide-biosynthesis-protein
MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFSMGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMYLASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVARVFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSANEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGIFNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFGMIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGLAVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCITVIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAAKLRAKFNIK
>NZ_LR594051.1|WP_002393823.1|566197_567748_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase
MKRLEAKKVTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFCKGLNFKEIYLENAVKDGLEIYVSEVPYEVPAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAEAFINKKN
>NZ_LR594051.1|WP_002358653.1|565558_566131_+|hypothetical-protein
MKQFFQKGSKPNQLVVAFHGTGGNEYQLLTTIATLYPEASVLSYLGTEGVGEQRRFFAPLVNGALPRANFDERVTAFLEEVWQPQKLYDEVIFIGYSNGANFILGLLEKNPTIANTVILLHPSNLGYQYVSGEFATKVIVTTGAQDELSIPGQVLSLANQLKKHFPVDFLLVDGGHGLSEEEVTKIKEVL
>NZ_LR594051.1|WP_002381241.1|579657_580671_-|acyltransferase-family-protein
MENDKRIYKWDNVKLFLIFLVIFGHILDREASPSRLMETINFWIYSFHMPAFIFVSGLFSKHAIKQRKYLRLLSFVWLYLLAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLITIFLQRVQPKIMLPIIIVIGCASGYLPVEGFLSLGRTLGFFPFFYCGYLMDIQKLQTFLDHRKVKWAAIGVILSSFLFVNSQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAAALVSLSWFALLPKRKLPLSALGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILALFFLALFILAITNMPVVKRGADYLFNPQSIMIPKKIYK
>NZ_LR594051.1|WP_002367993.1|580906_581860_+|ABC-transporter-ATP-binding-protein
MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVALNEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKKVQLNPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKELHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSSPELANYCGADLTAFLEAADETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCITSKTITRFMEQLLESEGQ
>NZ_LR594051.1|WP_002355507.1|581860_583378_+|ABC-transporter-permease/substrate-binding-protein
MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGIFQTIPSLALLGLLIPLIGIGRPPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGMSKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLIFIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISDLQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKEKNLLK
>NZ_LR594051.1|WP_002355509.1|583519_583975_+|arginine-repressor
MKKAERQRLIKQLIMQQEIETQDELITRLEELGVRATQATVSRDIREMSIVKTHGADGRVKYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVAGTVAGADTIIVITRSEEDAEHFIERIENMIF
>NZ_LR594051.1|WP_002386142.1|584008_585529_+|phosphoglucomutase
MVELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIAIGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTLQCDAAIMITASHLPYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVAKIRQGIHSPEEKPLQGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSEAMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIVTNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENYNLDDGAYVVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLRDFELFVENQADFAVDRENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQSDKNACVIEKIATFLQKYEEIDSQQIENNLGN
>NZ_LR594051.1|WP_002381242.1|585539_586094_+|GNAT-family-N-acetyltransferase
MENVLKGKHIGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDDRFLFAILENTTEEFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFYELGLHKIRLAVNSNNQKAIHVYEKVGFKKEGIDREALFQDGQWLGIYNYGILQKEWLQMIKAES
>NZ_LR594051.1|WP_002398655.1|586215_587067_-|RluA-family-pseudouridine-synthase
MRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVTLTFEETDYVRPTIHLGEATHVKVLYEDEHLMIVNKPYGIKTHPNQPQETDTLLNHVAAYLAEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQTINQPIGRDRHDRRKRRIDPQKGDSAITHVQVVQTLSNNQTAVTCVLETGRTHQIRVHLASEGHPIIGDPLYNPKSQAARLMLHASQLHLLHPFTKKQIVVTAAPGLW
>NZ_LR594051.1|WP_002355517.1|587421_589608_+|PBP1A-family-penicillin-binding-protein
MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIYLFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTEDRGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELFLAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKGPGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKYPYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDALFPPNAEDGAMVQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKPDSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGIPLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTKVKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKTGTTETNFDSSKTNDQWVIGYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPQVKQAQFPVADAYATGGKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEGIFGGLLGN
>NZ_LR594051.1|WP_002355518.1|589670_590012_+|YlbF-family-regulator
MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEEFTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND
>NZ_LR594051.1|WP_002364822.1|590167_591403_+|DNA-repair-exonuclease
MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIREAVDLVIFAGDTFHQSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETLYFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQAESDIHIGIYHGDTSRKAQQNYAPFTWKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATVQFEKVAEIDWTNEEVSLAQCRDTQSVLSYLETSLLTKWHAHQQQQLMALTLKETQHLDVTVVQAIVNGELLSYLQQQLLQKTQGDFFVYRLILQAEEPTKEPIYLSASPNLLTALEKTYLDPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL

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Crispr_ID: NZ_LR594051_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR594051_2

1889882-1890182

Orphan

II-A,II-B

Consensus_repeat	Method
GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRISPRCasFinder
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC	PILER-CR

4 spacers

The CRISPR arrays of NZ_LR594051_2

>merge|NZ_LR594051|2|1889882-1890182|CRT,CRISPRCasFinder,PILER-CR
GGTGATAGTTTGTTTTTAAACAACATGACTCTAAAACAGCACAAGCGATACGAAGAATGTAATAGGGGTTTTGGTACCATTCTAAACAACATGACTCTAAAACAAGCGGGGTTAGTAAATTTCGGATAGATACGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTACTTGTAAATAACTACGATAGTTTAAACGGTTTTGGTACCATTCTAAACAACATGACTCTAAAACAGCTTGTCAGCGCCTGTATACGGAGTATGGGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_LR594051|2|2|1889882-1890182|CRT
GGTGATAGTTTGTTTTTAAACAACATGACTCTAAAAC	AGCACAAGCGATACGAAGAATGTAATAGG
GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AAGCGGGGTTAGTAAATTTCGGATAGATA
CGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TACTTGTAAATAACTACGATAGTTTAAAC
GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AGCTTGTCAGCGCCTGTATACGGAGTATG
GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_LR594051|2|2|1889883-1890182|CRISPRCasFinder
GTGATAGTTTGTTTTTAAACAACATGACTCTAAAAC	AGCACAAGCGATACGAAGAATGTAATAGGG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AAGCGGGGTTAGTAAATTTCGGATAGATAC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TACTTGTAAATAACTACGATAGTTTAAACG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AGCTTGTCAGCGCCTGTATACGGAGTATGG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_LR594051|2|2|1889948-1890182|PILER-CR
GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AAGCGGGGTTAGTAAATTTCGGATAGATA
CGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TACTTGTAAATAACTACGATAGTTTAAAC
GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AGCTTGTCAGCGCCTGTATACGGAGTATG
GGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR594051.1\|WP_002360007.1\|1898376_1899522_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_LR594051.1\|WP_002381710.1\|1883547_1885314_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_LR594051.1\|WP_002356976.1\|1887048_1888062_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_LR594051.1\|WP_002362075.1\|1896614_1897739_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_LR594051.1\|WP_002380448.1\|1877483_1879907_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_LR594051.1\|WP_002381709.1\|1885310_1887044_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|274323
NZ_LR594051.1\|WP_002381708.1\|1890339_1891203_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_LR594051.1\|WP_002381711.1\|1875784_1876534_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_LR594051.1\|WP_002360016.1\|1881460_1882366_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_LR594051.1\|WP_002356959.1\|1897964_1898309_-\|DUF1831-domain-containing-protein	unknown	unknown	gnl\|CDD\|370163
NZ_LR594051.1\|WP_002356962.1\|1895196_1896435_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340949
NZ_LR594051.1\|WP_002364244.1\|1876651_1877353_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_LR594051.1\|WP_002356966.1\|1893499_1893865_-\|DUF1033-family-protein	unknown	unknown	gnl\|CDD\|336361
NZ_LR594051.1\|WP_002362076.1\|1899678_1900653_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|235039
NZ_LR594051.1\|WP_002380449.1\|1880220_1881432_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_LR594051.1\|WP_002360015.1\|1882487_1883468_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_LR594051.1\|WP_002362073.1\|1894664_1895180_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_LR594051.1\|WP_002381706.1\|1893962_1894532_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379115
NZ_LR594051.1\|WP_002356974.1\|1888058_1889477_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_LR594051.1\|WP_002398605.1\|1891287_1893537_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078

Protein	Function_ID	Function_description	E-value
NZ_LR594051.1\|WP_002360007.1\|1898376_1899522_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	5.37018e-179
NZ_LR594051.1\|WP_002381710.1\|1883547_1885314_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_LR594051.1\|WP_002356976.1\|1887048_1888062_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	9.60464e-103
NZ_LR594051.1\|WP_002362075.1\|1896614_1897739_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_LR594051.1\|WP_002380448.1\|1877483_1879907_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	2.52612e-175
NZ_LR594051.1\|WP_002381709.1\|1885310_1887044_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|274323	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD.	0
NZ_LR594051.1\|WP_002381708.1\|1890339_1891203_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.86487e-27
NZ_LR594051.1\|WP_002381711.1\|1875784_1876534_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.63593e-110
NZ_LR594051.1\|WP_002360016.1\|1881460_1882366_-\|prenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	8.82053e-105
NZ_LR594051.1\|WP_002356959.1\|1897964_1898309_-\|DUF1831-domain-containing-protein	gnl\|CDD\|370163	pfam08866, DUF1831, Putative amino acid metabolism. Solution of the structure of the Lactobacillus plantarum protein from this family has indicated a potential new fold with remote similarities to TBP-like (TATA-binding protein) structures. This similarity, in combination with genomic context analysis, leads us to propose an involvement in amino-acid metabolism. The potentially novel fold is an alpha + beta fold comprising two beta sheets packed against a single helix. The enzyme is present in the cytosol.	1.33245e-53
NZ_LR594051.1\|WP_002356962.1\|1895196_1896435_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.18762e-174
NZ_LR594051.1\|WP_002364244.1\|1876651_1877353_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.52313e-37
NZ_LR594051.1\|WP_002356966.1\|1893499_1893865_-\|DUF1033-family-protein	gnl\|CDD\|336361	pfam06279, DUF1033, Protein of unknown function (DUF1033). This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.	4.62165e-64
NZ_LR594051.1\|WP_002362076.1\|1899678_1900653_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|235039	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional.	0
NZ_LR594051.1\|WP_002380449.1\|1880220_1881432_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	5.21914e-122
NZ_LR594051.1\|WP_002360015.1\|1882487_1883468_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	2.52576e-80
NZ_LR594051.1\|WP_002362073.1\|1894664_1895180_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	1.1162e-31
NZ_LR594051.1\|WP_002381706.1\|1893962_1894532_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	4.84428e-15
NZ_LR594051.1\|WP_002356974.1\|1888058_1889477_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_LR594051.1\|WP_002398605.1\|1891287_1893537_-\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0

>NZ_LR594051.1|WP_002356974.1|1888058_1889477_-|cytochrome-ubiquinol-oxidase-subunit-I
MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFLLSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDKMNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWYEFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQMKALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSGSVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPSLYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITSNVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE
>NZ_LR594051.1|WP_002356976.1|1887048_1888062_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVWLLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTLSIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNYIALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLTVIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLKIMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY
>NZ_LR594051.1|WP_002381709.1|1885310_1887044_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSSGHLNQQLQSILLFFIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEGISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQSKADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILSTFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDGKNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGRKKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPYIFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIHTLIGESGRMLSGGQAQRVALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDYILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ
>NZ_LR594051.1|WP_002381710.1|1883547_1885314_-|thiol-reductant-ABC-exporter-subunit-CydC
MMEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLPENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTKYRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVVVFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANVRALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLIDAFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQEKKVLNDLSLTIPEQQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYIGVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVTQLPEGLQTMVDEAGLRFSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQGVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE
>NZ_LR594051.1|WP_002360015.1|1882487_1883468_+|polyprenyl-synthetase-family-protein
MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFAQLGDEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLFTEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELFSLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGVYTLPLLFAYQAAPDVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAITDIQQLPDGTAKETLLSLTELLLHRSF
>NZ_LR594051.1|WP_002360016.1|1881460_1882366_-|prenyltransferase
MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDNYNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMGLYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFLVALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAVGLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWWL
>NZ_LR594051.1|WP_002380449.1|1880220_1881432_-|NAD(P)/FAD-dependent-oxidoreductase
MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKITYNIMDVVNEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALGIVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH
>NZ_LR594051.1|WP_002380448.1|1877483_1879907_-|DNA-translocase-FtsK
MAQKRSTNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLRLVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLLFHAFMFRNVSGSQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGIFLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQQKLQERERMEQAAAERLTKTPVETHQPMVEEPATPTPVQIDSFQQQNQAMPVPPIAATKPQREQEEEAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQTFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPGKSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAGSTGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMMVASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRTIIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMPTDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVIGPSEGSKPRKVFLQAESEEAAPETPEQ
>NZ_LR594051.1|WP_002364244.1|1876651_1877353_-|GntR-family-transcriptional-regulator
MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEELFNVSKITIRRAIEMLATEEFVEKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGEEVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEVATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA
>NZ_LR594051.1|WP_002381711.1|1875784_1876534_-|ABC-transporter-ATP-binding-protein
MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGEILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQLAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVMGLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIVQNGNQKEFYDLIMVKLAEIEGVDNEF
>NZ_LR594051.1|WP_002381708.1|1890339_1891203_-|AraC-family-transcriptional-regulator
MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFVAGMSLAEYIKKRRLAEANLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWTGQAPSEVMKTQIQKTFPKFSFYIDIKGGQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELTQRITPQQRAEMHTFDDVYPHQVVNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQETWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK
>NZ_LR594051.1|WP_002398605.1|1891287_1893537_-|DNA-topoisomerase-III
MAKQNSANGKLFETHEFKEKPQGIFFKLFFYSRNLEKIELIFGIIRKDSTQKGAKLVVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLLGLKMPEDLNKEWQTWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDAGREGELVARWILEYVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKADWLVGLNVTRALTVKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKAKMTQKNPYALKERQEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQFSAKKTLSLVQSLYETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGAVVKQQKVFQNAKVTDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTKVTVAFGKETFVFHQNKVVVAGWKTTAEQPLSTVQWQKGMTVAPNFTINKELTSPPKPLTEGTLLGKMEKHSLGTPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPELTEKWEKSLEAIASGQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNLREKNTKDGKIYVCTDQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITEKIPDKKERKQKMTKHEERRLMKKYSQPDEPEESALAQALKAAMNQE
>NZ_LR594051.1|WP_002356966.1|1893499_1893865_-|DUF1033-family-protein
MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNYLTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKVI
>NZ_LR594051.1|WP_002381706.1|1893962_1894532_-|TetR/AcrR-family-transcriptional-regulator
MAKKRNLTKAKILESARNLAEELGVQQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVDLLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLIRVPKTQNQQLIEGIHETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIEDFIASLEVAG
>NZ_LR594051.1|WP_002362073.1|1894664_1895180_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGFPFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYLGLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQRLAKAKFEFLY
>NZ_LR594051.1|WP_002356962.1|1895196_1896435_+|multidrug-efflux-MFS-transporter
MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWSGITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLLQGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFFITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNNSISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLILAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLINLLWVRRSTAELKKEKNDD
>NZ_LR594051.1|WP_002362075.1|1896614_1897739_-|tRNA-2-thiouridine(34)-synthase-MnmA
MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGLIDRAYQDEKELQYV
>NZ_LR594051.1|WP_002356959.1|1897964_1898309_-|DUF1831-domain-containing-protein
MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKITITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE
>NZ_LR594051.1|WP_002360007.1|1898376_1899522_-|cysteine-desulfurase
MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQAKPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYLPVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQAYGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENLAGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLHLKGIPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGNTPEEIATFSEVLVAVIQQLKK
>NZ_LR594051.1|WP_002362076.1|1899678_1900653_-|ribose-phosphate-diphosphokinase
MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVYIIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVANMLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSGVQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEVLMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTADRQPATLNIISCAELMGEALLRIHENKPMSPLFRLEPKGE

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Crispr_ID: NZ_LR594051_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR594051_3

1909707-1909814

Orphan

Consensus_repeat	Method
TTCGTGCAAATGATACAACCTGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR594051_3

>merge|NZ_LR594051|3|1909707-1909814|CRISPRCasFinder
TTCGTGCAAATGATACAACCTGCCCTTCGGTCATCTTGTACTGTTCATCATCTACTCTGTCGCTTCGCGCCAGTCGTAGTGATTCGTGCAAATGACACAACCTGCCCT

>NZ_LR594051|3|3|1909707-1909814|CRISPRCasFinder
TTCGTGCAAATGATACAACCTGCCCT	TCGGTCATCTTGTACTGTTCATCATCTACTCTGTCGCTTCGCGCCAGTCGTAGTGA
TTCGTGCAAATGACACAACCTGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR594051.1\|WP_002360007.1\|1898376_1899522_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_LR594051.1\|WP_002381698.1\|1915640_1917449_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LR594051.1\|WP_002356939.1\|1917891_1918725_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_LR594051.1\|WP_002383739.1\|1912347_1912527_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR594051.1\|WP_002381704.1\|1905356_1906550_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349940
NZ_LR594051.1\|WP_002398603.1\|1910643_1912134_+\|glucosyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372986
NZ_LR594051.1\|WP_002364373.1\|1901611_1902481_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_LR594051.1\|WP_002356954.1\|1902467_1903394_+\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
NZ_LR594051.1\|WP_002360005.1\|1900865_1901615_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_LR594051.1\|WP_002384322.1\|1914091_1915372_-\|aminoacyltransferase	unknown	unknown	gnl\|CDD\|367067
NZ_LR594051.1\|WP_002356937.1\|1920528_1921080_-\|ECF-type-riboflavin-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|184218
NZ_LR594051.1\|WP_002381703.1\|1907417_1908098_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_LR594051.1\|WP_002362076.1\|1899678_1900653_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|235039
NZ_LR594051.1\|WP_002356936.1\|1921309_1922665_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_LR594051.1\|WP_002381700.1\|1912614_1913580_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR594051.1\|WP_002369140.1\|1908116_1909187_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_LR594051.1\|WP_002362078.1\|1903448_1904987_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_LR594051.1\|WP_002359936.1\|1913753_1914044_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR594051.1\|WP_002370363.1\|1906564_1907398_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_LR594051.1\|WP_002378495.1\|1918721_1920428_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192

Protein	Function_ID	Function_description	E-value
NZ_LR594051.1\|WP_002360007.1\|1898376_1899522_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	5.37018e-179
NZ_LR594051.1\|WP_002381698.1\|1915640_1917449_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LR594051.1\|WP_002356939.1\|1917891_1918725_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.28434e-41
NZ_LR594051.1\|WP_002356937.1\|1920528_1921080_-\|ECF-type-riboflavin-transporter-substrate-binding-protein	gnl\|CDD\|184218	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein.	3.25341e-93
NZ_LR594051.1\|WP_002381704.1\|1905356_1906550_-\|amidohydrolase	gnl\|CDD\|349940	cd08019, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_LR594051.1\|WP_002398603.1\|1910643_1912134_+\|glucosyltransferase-domain-containing-protein	gnl\|CDD\|372986	pfam14264, Glucos_trans_II, Glucosyl transferase GtrII. This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome.	3.44572e-32
NZ_LR594051.1\|WP_002364373.1\|1901611_1902481_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	4.30887e-76
NZ_LR594051.1\|WP_002356954.1\|1902467_1903394_+\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	7.59038e-124
NZ_LR594051.1\|WP_002360005.1\|1900865_1901615_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	2.54065e-104
NZ_LR594051.1\|WP_002384322.1\|1914091_1915372_-\|aminoacyltransferase	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	9.27394e-176
NZ_LR594051.1\|WP_002381703.1\|1907417_1908098_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.97195e-88
NZ_LR594051.1\|WP_002362076.1\|1899678_1900653_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|235039	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional.	0
NZ_LR594051.1\|WP_002356936.1\|1921309_1922665_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_LR594051.1\|WP_002369140.1\|1908116_1909187_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	8.08033e-168
NZ_LR594051.1\|WP_002362078.1\|1903448_1904987_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.093e-165
NZ_LR594051.1\|WP_002370363.1\|1906564_1907398_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.02051e-107
NZ_LR594051.1\|WP_002378495.1\|1918721_1920428_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.94445e-89

>NZ_LR594051.1|WP_002369140.1|1908116_1909187_-|methionine-ABC-transporter-ATP-binding-protein
MIELKNISVTFQQKKQEIQAVQDVSLTIDKGDIYGIVGYSGAGKSTLVRVINLLQRPTAGTVIINKENILTFSKKELRQQRKKIGMIFQHFNLMKERTIFSNIDFSLKYSGLSKSERRQKISHLLELVGLSEKRDAYPSQLSGGQKQRVAIARALANDPEILLCDEATSALDPKTTGQILALLKKLNQELNLTIVLITHEMQVVKEICNKVAVMENGCVVESNDIVSIFSQPQQPLTKDFIRTATHIDQALTTILEHPKLADLDKNQELIEFSYVGDQTNEPLIAQLYSQYQVYTNILYGNVEIVQNVPIGHLIVVLSGDEAQRQQALAYLAKQGVRTNVLKTYQQTKQKQNLQVI
>NZ_LR594051.1|WP_002381703.1|1907417_1908098_-|ABC-transporter-permease
MYQLFEKYFPNVVQLKQEFLQSTWETVYMVFWTALIAGVLGVLLGVVLVSTGPSGVLKNPPLYSILEKIINVCRSIPFIIMLALIQPLTRILAGTTIGTTAALVPLVIGVIPFFARQIENALLEVDPGVIEAAEAMGTSPLGIIFRVYLIEGLPSIIRVSAVTIINLIGLTAMAGAIGAGGLGNLAITRGYNRFQTDVTFMATLIILIMVFISQAISNQLIKKTSH
>NZ_LR594051.1|WP_002370363.1|1906564_1907398_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKFSKLIGLIGVLAFTIAGCASGSAKDTKTETVKLGVVGTKNDEWESVKDRLKKKNIDLQLVEFTDYTQPNAALAEKEIDLNAFQHQIFLDNYNKEHGTKLVSIGNTVNAPLGIYANKLKDITKIKDGGEIAIPNDPTNGGRALILLQTAGLIKVDPAKQQLPTVSDITENKRQLKITELDATQTARALQDVDASVINSGMAVDAGYTPDKDAIFLEPVNEKAKPYVNIVVAREEDQENKLYQKVVEEYQQEETKKIIAETSKGANVPAWETFGKK
>NZ_LR594051.1|WP_002381704.1|1905356_1906550_-|amidohydrolase
MSITTIQTIQEAIATEKEWIIHLRRHFHQYPEASLKEYETIKRIKEELLALAIPFVEVGETGVLATIEGGLGAGKTILLRADIDALELPDATGAAYASKNPGLNHACGHDGHAAALLGAAKVLKKHQDTFSGTIKLAFQPAEEIGAGARQFVEGNYLEAIDQVFGIHLDSSVPVGKLVATKGATNASCDIFKIEVSGQSSHVAQPQNGRDAVLAAASIVVELQKIVAREIDPLDSVVVGIGVLQAGTRYNIVANQATIEGTVRTFSQETRQFVLQRVEEIAHEIAQSHRTEIADFSVYAAANPLINEEQATNRAQQVASEIVGFENVVTDHPKSLGADDFADYLAVIPGIYGRVGSRNPENPATHFGHHHEQFDIDERALLLAAEYHVRYALNYLSE
>NZ_LR594051.1|WP_002362078.1|1903448_1904987_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSILTIEHLTHRFGEKVLYEEASLQVNKGDHLGLTGQNGVGKSTLIKILTGEVLPDEGTIQWQKNCKIGYLDQHVSVEQSLTMVDFLKQAFQELFDKEAKLTKLYEEYSQTASEKLLEQAGKLQTDLDESNFYQIDTIIQDLANGLGLQAIGLDKKLGELSGGQRSKVILAKLLLEAPDVLLLDEPTNYLDDTHIQWLVRYLNNFEGSFLLVSHDYQFLNEVTNCIADIEFGKLTKYTGNVEKSFAQKEQNKQTYLKQYQAQQEKIEKMEAYIRKYKAGNRATMAKSRQKQLDRLERLTPPGSLTKPAIEFPYQGLVATQALTTQKLVVGYREPLLEPLDLMVHVGEKVALKGFNGIGKSTLIKTLTKVIPSLDGEFHYPLNTKIAYFTQDLAWPNEQLTPLDYLSDRFPDTTIKERRSHLARAGLPDKLAMQSLALLSGGEQTKVKLAELMMQTSNLLFLDEPTNHIDEAAKKSLQEAIHVYPGTVFLVSHEADFYEEIVDRVIDIEELVK
>NZ_LR594051.1|WP_002356954.1|1902467_1903394_+|metal-ABC-transporter-substrate-binding-protein
MKKFSLFFLTLLAGLTLAACGNQAAEKKEKLAIVTTNSILSDLVKNVGQDKIELHSIVPIGTDPHEYEPLPEDIAKASEADILFFNGLNLETGGNGWFNKLMKTAKKVENKDYFSTSKNVTPQYLTSAGQEQTEDPHAWLDIENGIKYVENIRDVLVEKDPKNKDFYTENAKNYTEKLSKLHEEAKAKFADIPDDKKLLVTSEGAFKYFSKAYDLNAAYIWEINTESQGTPEQMTTIIDTIKKSKAPVLFVETSVDKRSMERVSKEVKRPIYDTLFTDSLAKEGTEGDTYYSMMNWNLTKIHDGLMSK
>NZ_LR594051.1|WP_002364373.1|1901611_1902481_+|metal-ABC-transporter-permease
MIAAFIDGLFRYQFLQNALLTSIIVGLISGVIGSFIILRGMSLMGDAISHAVLPGVAVSYMFGFNYIFGASIFGLLAALSIGFITQKSPLKNDTAIGVVFSSFFALGIIFISFAKSSTDLYHILFGNVLAVADTDILITCVVGVIVLIFVALFYKELQLTSFDPTMAQAYGLNIQFFHYALMFLLTLVAVSSLQTVGTILVIAMLITPAATAYLLTNHLPTMIGLASTFGILSSVIGLFFSYSYNLASGATIVLTAALFFLLAFFFSPKKGLVFVNREKEMEESTNEKI
>NZ_LR594051.1|WP_002360005.1|1900865_1901615_+|metal-ABC-transporter-ATP-binding-protein
MRKSFNLAVQALTVQYQGRTALNNIHVTIPSGKITGIIGPNGAGKSTFIKGLLGLIKTKERDVLLNNQAIDQQKTTIAYVEQRSALDLSFPISVFETVLLGTYPNLGLLKRPGKKEKQAAMAALKMVQLEDYAQRQIGELSGGQLQRVFIARVLAQGAEVIFLDEPFVGIDMSSEKVIMDILKSLKNQGKMIIIVHHDLHKVSHYFDELIVLKNRLIAAGPVEQTFTAETLQEAYGDLLGDLLIQGVAK
>NZ_LR594051.1|WP_002362076.1|1899678_1900653_-|ribose-phosphate-diphosphokinase
MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVYIIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVANMLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSGVQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEVLMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTADRQPATLNIISCAELMGEALLRIHENKPMSPLFRLEPKGE
>NZ_LR594051.1|WP_002360007.1|1898376_1899522_-|cysteine-desulfurase
MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQAKPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYLPVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQAYGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENLAGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLHLKGIPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGNTPEEIATFSEVLVAVIQQLKK
>NZ_LR594051.1|WP_002398603.1|1910643_1912134_+|glucosyltransferase-domain-containing-protein
MMKQLPTESKKFDLKNWCIENKAYLLLIILIYQVAVLSIGIINFPYLDDNARQVAGMTDFGTTYARWGSEFLSWFVQGSRHLTDLGLTTPILTGLILSLTSILAIYIINDQKISWGSSLVATLIGLNPWFLQCLSFRFDSPYMALSIFCSFLPFYWWQRNSFTFFLVSVFSLFVMFNTYQASSGIYIVIVLFLTFKQLLAGENFIALCKKVALAAIAYLLSIVSYLIELKFVPSATNNIGGSQALPSFHDIPSVAYQNSYHYFSELLNQSNRLWLLLLLLLLVLFFISHLSNSKINLGLSFLYCILYLGLASLLSFGIFIVYSRNIAGDAPRYIYGFAVFVTISMLSLFNNRQVKAIYLTSLLVASLLSYYILSFVLVYSSTLNYQKEAFNRQAAVLTDDLKNVVTNERKKVYLNTFFKNSTVYANTSRNYPILSKIVPPNDGLYFPNYVWFNTSSNLGVEMAPLTDTDMSKNQKVVSNHFYDIYTNNKEIFVFMK
>NZ_LR594051.1|WP_002383739.1|1912347_1912527_+|hypothetical-protein
MRTRQKKLFLFSMILWLVEFLITRISDSFPGATPLFVVICLIQGILFTYFCLAFFYYPQ
>NZ_LR594051.1|WP_002381700.1|1912614_1913580_-|hypothetical-protein
MSTIHEFPKNYERFIAQGEEALVEHNQIAALENFQQAYQLQQTPPVNQKIVQLLLEMDEADEALALAEAFQDSYFENLETAAIYMQIYSQSRRFIEGYILLKQLLQTNKITLAQQKTLEQQLMQVEEAYRQLETQQIQAIKRNLLVSDQLPVYQQLANIKTSLYLPKPVFVEVAKDLVMNQALSYFAREWFIEELALLQFSEPLTFLWYDNQPQTVLLEGKTGPLNTPIYSEIYTELRNRLENDDPIMLQHLEEEIRLHLAYLYPLAEKVISDPTIWVLGYLATYYPEYIEKELTEAKGHQIAAVQNVQQAIRTAFTQIML
>NZ_LR594051.1|WP_002359936.1|1913753_1914044_-|hypothetical-protein
MENQVEVMTYAQLKEIMQALEANEAITEDTKVFIDTGWDSVQEVAPDAVSIEKVAKFTVADVLTNESFAGYSLEEKAEKMNAEGDLETAIIIRNLY
>NZ_LR594051.1|WP_002384322.1|1914091_1915372_-|aminoacyltransferase
MLIYLTKKDCELFDMDQFSTLTEQEFTTFAMTHPAGNFLETPEMKHLLERRGWHCEYVGVKREGQLIAACILSKKKVKIGYAFDIDGGILMDYTDKKCVEAFFTGLKKYVKKNDGLYLTFTPNKQICLRDFNGGEVEKVNQETFDYFTSIGFEHQGFDVHNFDGAPRWLFVKDMAGLTEEELWKSYGKDAKYDIKKTWEYGVTTRELRYEELPLFKKLTEETSARRNFEDKDLAYYQAVYEEFGERAKFMVAELNFATYLENLHEKLRKLQETLNEVNEALIANPKSRKKNNQKREFEDEVRTVRKRIDEAKEMKTSDEPEILAGALFIVHPQEVVYLFSGTYEKYKQYYAPYLIQHKMLTYTVENNIPKYNFYGVDGVFDGSDGVLKFKQSFGGHVEELMGNFQWKAKPMKYALYHALKTIKEKV
>NZ_LR594051.1|WP_002381698.1|1915640_1917449_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGMIGKENVTESLIQGLTKLEYRGYDSAGICVNDQSQQPHVVKAVGGIADLAAKLTPEIDGTVGIGHTRWATHGEPTVANAHPHVSSDQRFALVHNGVIENFEELKEQFLSGAHLIGDTDTEIVVQLIAHFAENGFSTKDAFKAALAEIKGSYAFALMDKMDPNTIYVAKNKSPLLIGLGEGFNVICSDAMAMIKETNQFVEIVDGEIVTVTADKVVIETPEGQVINREPFEAQLDLNDIEKGTYPFYMLKEIDEQPAVMRKIVQAYTQGEKVTLDEALLEKINQCDRIYIIACGTSYNAGWVGKSLIETIASIPVEVHLSSEFGYNMPILSEKPFFIFLSQSGETADSRQVLVQVNELGHPSLTLTNVAGSTLSREADDTLLLYAGPEIAVASTKAYTAQIAVLAILAKAIGEERQTLAAVSFDVAHELSVVAAVMETLIDEKQQMKALVEDYLTYTRNAFYIGRGVDYYVSMEAALKLKEISYIQAEGFAAGELKHGTIALIEEGTPVIGIVTDAKVAAHTRGNLKEVESRGARNIVIALESLAKPQDQLIIPDVHPLLSALVSIVPGQLLAYYATLQRGYDVDKPRNLAKSVTVE
>NZ_LR594051.1|WP_002356939.1|1917891_1918725_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MSERQMLGYHPDSTWIHRLNGTSKLVFLIVVSVACMTTYDTRYLLGMSVVSLVLLKLSNIKWHQISFVIKFIAIFSLLNILTVYLFAPEYGVDLYQSRTVIWEGIGRFTLTQEELFYEFNLVLKYFCTIPLALIFLLTTNPSEFASSLNRIGVSYRISYAVALAIRYIPDIQEDFFNISLAQQARGYEMSKKGRLGQRIKGVAQIVLPLILSSLDRIETVSTAMELRRFGQKKNRTWYAQQPFHLRDFSVMILALCLLGISFWLFHVNGGRFYNPFQ
>NZ_LR594051.1|WP_002378495.1|1918721_1920428_-|ABC-transporter-ATP-binding-protein
MKKPIITFNNFSFQYHSQSEPTLKGIQLTIYEGEKVLIVGPSGSGKSTLAQCINGLIPNIYEGEIQGTATVAGKNIQETSLFDLSFDVGTVLQDTDGQFIGLTVAEDIAFALENDAVEQAEMKKAVHKWSEIVELNQLLQHRPQDLSGGQKQRVSMAGVLINQSKILLFDEPLANLDPRAGQETMTLIDTIQQETKATVLIIEHRLEDVLCESVDRIIVMNEGAIISDTTPDELLRQDTLTQQGIREPLYVTAMKYAGIDLTQVSHLDKLAEVSGEMVLPKMTQWSVQPSSVSAVKGAELLRLEQVSYQYDRHGEKVLDDFSVTIHHGEMISIVGKNGAGKSTLSKIICGFITPQSGKILWEGQDFSNYSIKERADKIGYVMQNPNQMISKKMIFEEVALGLVLRDVPQAEIEERVTNILHICGLYPFRNWPISALSFGQKKRVTIASILVLEPELLILDEPTAGQDFKHYTEMMTFLEELNRLGVTILMITHDMHLMLEYTTRALVVCDGRLLADATPVAVLTDEKLIQAASLKETSLFTFAKALGLENPLLFTEKFVAYDREVRFG
>NZ_LR594051.1|WP_002356937.1|1920528_1921080_-|ECF-type-riboflavin-transporter-substrate-binding-protein
MKEKMSVKTIVAIGIGSAVFVILGRFVVIPTGIPNTNLETSYPFLALMSVVFGPVAGGLIGLIGHTLKDFTTYGSAWWSWIICSGIIGIIFGFAGRKMDLQHGEFTTNDMVRFNIFQAFGNIVVWGLIAPSLDILIYSEPASKVFTQGVFATVSNIVAVGIIGTLLMKAYASTRTKKGSLSKD
>NZ_LR594051.1|WP_002356936.1|1921309_1922665_-|phosphoglucosamine-mutase
MGKYFGTDGVRGIANKELTPELAFKLGRYGGYVLSQHEDSSRKPRVLVGRDTRISGEMLEQALIAGLLSVGIEVFQLGVISTPGVAYLTRLQKASAGVMISASHNPAEDNGIKFFGADGFKLVDDQEAEIEALLDAEEDTLPRPSAEGLGSLDEFPEGLLKYSQFLVQSIPGDLADMTVCLDAANGATATAVNRVFADLETDFYTMGTSPNGLNINDGVGSTHPEALAEMVVEKGADAGLAFDGDGDRIIAVDELGRIIDGDKIMYICAKYLAEKKRLKKDTIVTTVMSNLGFHKAVEEIGLKDVVTQVGDRYVVEEMRKNDYNFGGEQSGHMIFLDYNTTGDGMLSGIQLLNVMKQTGKKLSELADEVTIYPQKLVNIRVTDKNGAMEVPAIKAVVEQAEAEMNGEGRILVRPSGTEPLLRVMAEAPTQEKVDYYVDKIAEVVRAEIGVE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR594051_1	1.7\|579211\|30\|NZ_LR594051\|CRISPRCasFinder,CRT	579211-579240	30	MK867354	Synechococcus phage S-SCSM1, complete genome	151260-151289	6	0.8
NZ_LR594051_2	2.8\|1890117\|30\|NZ_LR594051\|CRISPRCasFinder	1890117-1890146	30	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	290426-290455	6	0.8
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019095	Synechococcus phage ACG-2014f isolate Syn7803US34, complete genome	7535-7564	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019086	Synechococcus phage ACG-2014f isolate Syn7803US17, complete genome	7534-7563	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019106	Synechococcus phage ACG-2014f isolate Syn7803US50, complete genome	7304-7333	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019107	Synechococcus phage ACG-2014f isolate Syn7803US52, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019143	Synechococcus phage ACG-2014f isolate Syn7803C12, complete genome	7306-7335	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019103	Synechococcus phage ACG-2014f isolate Syn7803US44, complete genome	7852-7881	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019102	Synechococcus phage ACG-2014f isolate Syn7803US43, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019066	Synechococcus phage ACG-2014f isolate Syn7803C9, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019142	Synechococcus phage ACG-2014f isolate Syn7803C11, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019149	Synechococcus phage ACG-2014f isolate Syn7803C21, complete genome	7304-7333	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019105	Synechococcus phage ACG-2014f isolate Syn7803US4, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019098	Synechococcus phage ACG-2014f isolate Syn7803US39, complete genome	7306-7335	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019159	Synechococcus phage ACG-2014f isolate Syn7803C34, complete genome	7534-7563	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019123	Synechococcus phage ACG-2014f isolate Syn7803US7, complete genome	7301-7330	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019111	Synechococcus phage ACG-2014f isolate Syn7803US57, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019148	Synechococcus phage ACG-2014f isolate Syn7803C19, complete genome	7304-7333	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	NC_047712	Synechococcus phage ACG-2014f isolate Syn7803C7, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019090	Synechococcus phage ACG-2014f isolate Syn7803US24, complete genome	7534-7563	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019146	Synechococcus phage ACG-2014f isolate Syn7803C16, complete genome	7299-7328	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019152	Synechococcus phage ACG-2014f isolate Syn7803C25, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019093	Synechococcus phage ACG-2014f isolate Syn7803US30, complete genome	7304-7333	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019151	Synechococcus phage ACG-2014f isolate Syn7803C24, complete genome	7302-7331	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019150	Synechococcus phage ACG-2014f isolate Syn7803C22, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	NC_026927	Synechococcus phage ACG-2014f isolate Syn7803C90, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019097	Synechococcus phage ACG-2014f isolate Syn7803US37, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019045	Synechococcus phage ACG-2014f isolate Syn7803C6, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019037	Synechococcus phage ACG-2014f isolate Syn7803C58, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019099	Synechococcus phage ACG-2014f isolate Syn7803US3, complete genome	7306-7335	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019155	Synechococcus phage ACG-2014f isolate Syn7803C29, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019141	Synechococcus phage ACG-2014f isolate Syn7803C10, complete genome	7229-7258	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019053	Synechococcus phage ACG-2014f isolate Syn7803C80, complete genome	7306-7335	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019147	Synechococcus phage ACG-2014f isolate Syn7803C17, complete genome	7301-7330	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019100	Synechococcus phage ACG-2014f isolate Syn7803US40, complete genome	7304-7333	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019101	Synechococcus phage ACG-2014f isolate Syn7803US42, complete genome	8387-8416	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019085	Synechococcus phage ACG-2014f isolate Syn7803US13, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019096	Synechococcus phage ACG-2014f isolate Syn7803US36, complete genome	7956-7985	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019091	Synechococcus phage ACG-2014f isolate Syn7803US26, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019144	Synechococcus phage ACG-2014f isolate Syn7803C14, complete genome	7303-7332	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019145	Synechococcus phage ACG-2014f isolate Syn7803C15, complete genome	7264-7293	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019058	Synechococcus phage ACG-2014f isolate Syn7803C8, complete genome	7647-7676	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KJ019092	Synechococcus phage ACG-2014f isolate Syn7803US2, complete genome	7306-7335	7	0.767
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	311358-311387	8	0.733
NZ_LR594051_1	1.2\|578881\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578881-578910	30	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	150352-150381	8	0.733
NZ_LR594051_1	1.2\|578881\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578881-578910	30	MN694737	Marine virus AFVG_250M893, complete genome	29654-29683	8	0.733
NZ_LR594051_1	1.2\|578881\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578881-578910	30	KT630647	Salmonella phage SEN8, complete genome	20437-20466	8	0.733
NZ_LR594051_1	1.6\|579145\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	579145-579174	30	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	690478-690507	8	0.733
NZ_LR594051_1	1.6\|579145\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	579145-579174	30	NZ_CP045361	Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence	103642-103671	8	0.733
NZ_LR594051_1	1.6\|579145\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	579145-579174	30	NZ_CP045319	Roseivivax sp. THAF197b plasmid pTHAF197b_a, complete sequence	226475-226504	8	0.733
NZ_LR594051_2	2.2\|1889985\|29\|NZ_LR594051\|CRT,PILER-CR	1889985-1890013	29	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	93630-93658	8	0.724
NZ_LR594051_2	2.4\|1890117\|29\|NZ_LR594051\|CRT,PILER-CR	1890117-1890145	29	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	290427-290455	8	0.724
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	NC_048704	Pectobacterium phage Nepra, complete genome	13975-14004	9	0.7
NZ_LR594051_1	1.1\|578815\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	578815-578844	30	KY514265	Pectobacterium phage vB_PatP_CB3, complete genome	60666-60695	9	0.7
NZ_LR594051_1	1.6\|579145\|30\|NZ_LR594051\|PILER-CR,CRISPRCasFinder,CRT	579145-579174	30	NZ_CP042333	Bosea sp. F3-2 plasmid pB32-2, complete sequence	30149-30178	9	0.7
NZ_LR594051_2	2.6\|1889985\|30\|NZ_LR594051\|CRISPRCasFinder	1889985-1890014	30	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	93629-93658	9	0.7

1. spacer 1.7|579211|30|NZ_LR594051|CRISPRCasFinder,CRT matches to MK867354 (Synechococcus phage S-SCSM1, complete genome) position: , mismatch: 6, identity: 0.8

caatgtaaatgctcattatgatttacatat	CRISPR spacer
gatggaaaatcctcattatgatttccatat	Protospacer
 *  * **** ************* *****

2. spacer 2.8|1890117|30|NZ_LR594051|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agcttgtcagcgcctgtatacggagtatgg--	CRISPR spacer
agcctgtcatcgcctgtatacg--gcagggct	Protospacer
***.***** ************  *.* **

3. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019095 (Synechococcus phage ACG-2014f isolate Syn7803US34, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

4. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019086 (Synechococcus phage ACG-2014f isolate Syn7803US17, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

5. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019106 (Synechococcus phage ACG-2014f isolate Syn7803US50, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

6. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019107 (Synechococcus phage ACG-2014f isolate Syn7803US52, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

7. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019143 (Synechococcus phage ACG-2014f isolate Syn7803C12, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

8. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019103 (Synechococcus phage ACG-2014f isolate Syn7803US44, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

9. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019102 (Synechococcus phage ACG-2014f isolate Syn7803US43, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

10. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019066 (Synechococcus phage ACG-2014f isolate Syn7803C9, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

11. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019142 (Synechococcus phage ACG-2014f isolate Syn7803C11, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

12. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019149 (Synechococcus phage ACG-2014f isolate Syn7803C21, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

13. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019105 (Synechococcus phage ACG-2014f isolate Syn7803US4, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

14. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019098 (Synechococcus phage ACG-2014f isolate Syn7803US39, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

15. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019159 (Synechococcus phage ACG-2014f isolate Syn7803C34, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

16. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019123 (Synechococcus phage ACG-2014f isolate Syn7803US7, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

17. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019111 (Synechococcus phage ACG-2014f isolate Syn7803US57, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

18. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019148 (Synechococcus phage ACG-2014f isolate Syn7803C19, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

19. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NC_047712 (Synechococcus phage ACG-2014f isolate Syn7803C7, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

20. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019090 (Synechococcus phage ACG-2014f isolate Syn7803US24, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

21. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019146 (Synechococcus phage ACG-2014f isolate Syn7803C16, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

22. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019152 (Synechococcus phage ACG-2014f isolate Syn7803C25, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

23. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019093 (Synechococcus phage ACG-2014f isolate Syn7803US30, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

24. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019151 (Synechococcus phage ACG-2014f isolate Syn7803C24, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

25. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019150 (Synechococcus phage ACG-2014f isolate Syn7803C22, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

26. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NC_026927 (Synechococcus phage ACG-2014f isolate Syn7803C90, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

27. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019097 (Synechococcus phage ACG-2014f isolate Syn7803US37, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

28. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019045 (Synechococcus phage ACG-2014f isolate Syn7803C6, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

29. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019037 (Synechococcus phage ACG-2014f isolate Syn7803C58, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

30. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019099 (Synechococcus phage ACG-2014f isolate Syn7803US3, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

31. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019155 (Synechococcus phage ACG-2014f isolate Syn7803C29, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

32. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019141 (Synechococcus phage ACG-2014f isolate Syn7803C10, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

33. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019053 (Synechococcus phage ACG-2014f isolate Syn7803C80, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

34. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019147 (Synechococcus phage ACG-2014f isolate Syn7803C17, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

35. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019100 (Synechococcus phage ACG-2014f isolate Syn7803US40, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

36. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019101 (Synechococcus phage ACG-2014f isolate Syn7803US42, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

37. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019085 (Synechococcus phage ACG-2014f isolate Syn7803US13, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

38. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019096 (Synechococcus phage ACG-2014f isolate Syn7803US36, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

39. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019091 (Synechococcus phage ACG-2014f isolate Syn7803US26, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

40. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019144 (Synechococcus phage ACG-2014f isolate Syn7803C14, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

41. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019145 (Synechococcus phage ACG-2014f isolate Syn7803C15, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

42. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019058 (Synechococcus phage ACG-2014f isolate Syn7803C8, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

43. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KJ019092 (Synechococcus phage ACG-2014f isolate Syn7803US2, complete genome) position: , mismatch: 7, identity: 0.767

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aaactcctgtacatatcagaagctggatct	Protospacer
*  *..***************  ******.

44. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.733

atccctctgtacatatcagaatatggatcc	CRISPR spacer
aatatcctgtccaaatcagaatatggatcg	Protospacer
* . ..**** ** ***************

45. spacer 1.2|578881|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.733

tgcagactttggtggtgctggtcgaagcat	CRISPR spacer
accagacgttgatggtgctggtcgaatggg	Protospacer
  ***** ***.**************  .

46. spacer 1.2|578881|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to MN694737 (Marine virus AFVG_250M893, complete genome) position: , mismatch: 8, identity: 0.733

tgcagactttggtggtgctggtcgaagcat	CRISPR spacer
ctttgactttggtggtgctggtggaaatct	Protospacer
. . ****************** ***.. *

47. spacer 1.2|578881|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KT630647 (Salmonella phage SEN8, complete genome) position: , mismatch: 8, identity: 0.733

tgcagactttggtggtgctggtcgaagcat	CRISPR spacer
tgctgactttggtggtgctgctctcgccgg	Protospacer
*** **************** **  . *.

48. spacer 1.6|579145|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 8, identity: 0.733

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
gcggtgcagaccatcgtgctccatcgctcc	Protospacer
 *.  ******** * ************.

49. spacer 1.6|579145|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045361 (Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence) position: , mismatch: 8, identity: 0.733

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
tgcggcctgaccaacctgcgccatcgctta	Protospacer
*   . * *********** *********.

50. spacer 1.6|579145|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045319 (Roseivivax sp. THAF197b plasmid pTHAF197b_a, complete sequence) position: , mismatch: 8, identity: 0.733

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
tgcggcctgaccaacctgcgccatcgctta	Protospacer
*   . * *********** *********.

51. spacer 2.2|1889985|29|NZ_LR594051|CRT,PILER-CR matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

aagcggggttagtaaatttcggatagata	CRISPR spacer
tgccggggttagcaaatttcggatcgccg	Protospacer
 . *********.*********** * ..

52. spacer 2.4|1890117|29|NZ_LR594051|CRT,PILER-CR matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

agcttgtcagcgcctgtatacggagtatg	CRISPR spacer
agcctgtcatcgcctgtatacggcagggc	Protospacer
***.***** ************* . .

53. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NC_048704 (Pectobacterium phage Nepra, complete genome) position: , mismatch: 9, identity: 0.7

atccctctgtacatatcagaatatggatcc	CRISPR spacer
tgtattctgtacagatcagaatatgggttg	Protospacer
  . .******** ************.*.

54. spacer 1.1|578815|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to KY514265 (Pectobacterium phage vB_PatP_CB3, complete genome) position: , mismatch: 9, identity: 0.7

atccctctgtacatatcagaatatggatcc	CRISPR spacer
tgtattctgtacagatcagaatatgggttg	Protospacer
  . .******** ************.*.

55. spacer 1.6|579145|30|NZ_LR594051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042333 (Bosea sp. F3-2 plasmid pB32-2, complete sequence) position: , mismatch: 9, identity: 0.7

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
ggccagcagcccaacctgctccaacgcccc	Protospacer
   .***** ************* ***..

56. spacer 2.6|1889985|30|NZ_LR594051|CRISPRCasFinder matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aagcggggttagtaaatttcggatagatac	CRISPR spacer
tgccggggttagcaaatttcggatcgccgg	Protospacer
 . *********.*********** * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

385186 : 405160

Bacillus_phage(33.33%)

integrase,transposase

attL 385899:385913|attR 402409:402423

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002355365.1\|385186_386356_-\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	3.6e-31	28.9
385899:385913	attL	NA	NA	NA	NA
WP_002355366.1\|386399_386630_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002425115.1\|386966_388283_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	3.0e-55	36.6
WP_002355369.1\|389657_390695_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_002335374.1\|390720_391659_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_002355370.1\|392183_392783_+\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	2.5e-28	35.6
WP_002386101.1\|394566_395754_+	nucleotide sugar dehydrogenase	M1HV26	Paramecium_bursaria_Chlorella_virus	4.2e-96	48.6
WP_002355375.1\|395790_396984_+	glycosyltransferase	M1H5V3	Paramecium_bursaria_Chlorella_virus	1.1e-43	32.4
WP_000221326.1\|397141_398101_+\|transposase	IS30-like element IS6770 family transposase	NA	NA	NA	NA
WP_002355377.1\|398274_398871_+	HTH domain-containing protein	NA	NA	NA	NA
WP_100815082.1\|399165_400538_-\|transposase	IS3-like element ISLla3 family transposase	A0A1B1P773	Bacillus_phage	3.5e-54	43.1
WP_002355383.1\|400920_402270_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.8e-118	51.4
WP_002355386.1\|402407_403031_-	cysteine hydrolase	NA	NA	NA	NA
402409:402423	attR	NA	NA	NA	NA
WP_002384811.1\|403057_403222_-	hypothetical protein	NA	NA	NA	NA
WP_002355388.1\|403295_403886_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_042341262.1\|404225_404486_+	DUF3102 domain-containing protein	J7KDG2	Streptococcus_phage	1.4e-12	49.4
WP_157408169.1\|404668_405160_+\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	9.1e-21	37.9

DBSCAN-SWA_2

467527 : 523096

Staphylococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002370911.1\|467527_467839_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	1.6e-23	65.6
WP_002367939.1\|467944_468220_-\|transposase	transposase	A0A0N9S8A3	Staphylococcus_phage	1.1e-10	40.9
WP_002358549.1\|468728_469895_-	ROK family transcriptional regulator	NA	NA	NA	NA
WP_002384845.1\|470251_472327_+	family 31 glucosidase	NA	NA	NA	NA
WP_002358551.1\|472326_473112_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_002358552.1\|473104_473917_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_002363085.1\|473941_474424_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_002358554.1\|474435_474843_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002364888.1\|474947_476255_+	xylose isomerase	NA	NA	NA	NA
WP_002363087.1\|476316_477807_+	xylulokinase	NA	NA	NA	NA
WP_010783539.1\|478811_479771_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_002364887.1\|480000_483033_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.6e-17	23.2
WP_002367943.1\|483222_483807_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_002364885.1\|483803_485039_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_002331201.1\|485320_487363_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002331202.1\|487373_487994_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_002326530.1\|488005_488464_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002331203.1\|488482_488761_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_048950921.1\|488785_490153_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_002331205.1\|490167_491313_+	galactonate dehydratase	Q6A202	Oenococcus_phage	1.2e-52	33.4
WP_002381217.1\|491339_491831_+	hypothetical protein	NA	NA	NA	NA
WP_002381218.1\|492273_493473_+	MFS transporter	NA	NA	NA	NA
WP_002381219.1\|493548_494109_-	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_002386124.1\|494252_494867_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002364876.1\|495107_495491_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_002381221.1\|497975_498440_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002307675.1\|498432_498729_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_002367952.1\|499313_500156_-	MATE family efflux transporter	NA	NA	NA	NA
WP_002334632.1\|500501_501170_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_002355434.1\|501272_501539_+	ACT domain-containing protein	NA	NA	NA	NA
WP_002384854.1\|501553_502897_+	PFL family protein	NA	NA	NA	NA
WP_002331389.1\|503799_504249_-	DIP1984 family protein	NA	NA	NA	NA
WP_000221326.1\|505629_506589_-\|transposase	IS30-like element IS6770 family transposase	NA	NA	NA	NA
WP_002363088.1\|506846_507566_+	metal ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.2e-18	32.7
WP_002364866.1\|507567_508410_+	metal ABC transporter permease	NA	NA	NA	NA
WP_002364865.1\|508406_509357_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002297302.1\|509371_509605_+	iron-dependent repressor	NA	NA	NA	NA
WP_071623368.1\|509933_510518_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002358579.1\|510648_511317_+	cobalt transporter	NA	NA	NA	NA
WP_010774431.1\|511327_512743_+	energy-coupling factor ABC transporter ATP-binding protein	A0A1V0SGN0	Hokovirus	4.5e-20	26.4
WP_002363093.1\|512760_513330_+	MptD family putative ECF transporter S component	NA	NA	NA	NA
WP_002381224.1\|513439_515194_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-24	24.5
WP_002381225.1\|515275_516919_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.7e-29	28.4
WP_002363096.1\|517441_517702_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_002297318.1\|517716_517896_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_002363097.1\|517926_518304_+	hypothetical protein	NA	NA	NA	NA
WP_002363099.1\|518324_518474_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_002363103.1\|521322_521751_+	NusG domain II-containing protein	NA	NA	NA	NA
WP_010783541.1\|522136_523096_+\|transposase	IS30-like element IS6770 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

833214 : 841132

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002355794.1\|833214_834273_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-17	30.1
WP_002355795.1\|834272_835229_+	ATP-binding cassette domain-containing protein	A0A1J0FA64	Only_Syngen_Nebraska_virus	3.2e-06	23.9
WP_002355796.1\|835269_836340_+	helix-turn-helix domain-containing protein	A0A288TXV8	Enterococcus_phage	7.6e-89	49.0
WP_002355797.1\|836739_837261_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.0e-14	33.3
WP_002355798.1\|837374_837575_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002355799.1\|837635_837995_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_002386182.1\|838041_838422_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_002355801.1\|838489_838849_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_002355803.1\|839425_839941_+	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	1.7e-38	48.8
WP_002355804.1\|839956_841132_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.5e-85	47.7

DBSCAN-SWA_4

870255 : 926253

Enterococcus_phage(65.22%)

portal,capsid,tail,tRNA,protease,terminase,integrase,head

attL 889152:889179|attR 926446:926473

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002386189.1\|870255_870750_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002355839.1\|870742_871264_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002355840.1\|871433_871643_+	hypothetical protein	NA	NA	NA	NA
WP_002358859.1\|871716_872727_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002355842.1\|872750_873758_-	galactose mutarotase	NA	NA	NA	NA
WP_002355844.1\|873747_874416_-	beta-phosphoglucomutase	A0A1D8KNV9	Synechococcus_phage	8.6e-06	24.6
WP_002355845.1\|874408_876703_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_002355846.1\|876983_879152_+	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	7.3e-06	37.2
WP_002355847.1\|879366_880191_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_002355848.1\|880250_881066_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.2e-22	29.5
WP_002355853.1\|881192_882155_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002355854.1\|882135_882435_+	hypothetical protein	NA	NA	NA	NA
WP_002355855.1\|882427_882745_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_002355856.1\|882889_883321_+	VOC family protein	NA	NA	NA	NA
WP_002355858.1\|883773_884178_+	hypothetical protein	NA	NA	NA	NA
WP_002355859.1\|884170_884383_+	hypothetical protein	NA	NA	NA	NA
WP_002355860.1\|884450_884834_+	hypothetical protein	NA	NA	NA	NA
WP_002355861.1\|884852_885131_+	hypothetical protein	NA	NA	NA	NA
WP_002364695.1\|885209_885623_+	hypothetical protein	NA	NA	NA	NA
WP_002391498.1\|885624_887187_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_002355864.1\|887206_887491_+	hypothetical protein	NA	NA	NA	NA
WP_002355865.1\|887498_887804_+	hypothetical protein	NA	NA	NA	NA
WP_002355866.1\|888194_888503_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_002355867.1\|888535_888880_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_002355868.1\|888892_889180_+	50S ribosomal protein L27	NA	NA	NA	NA
889152:889179	attL	NA	NA	NA	NA
WP_002403733.1\|889268_890423_-\|integrase	site-specific integrase	Q9AZK8	Lactococcus_phage	7.5e-66	36.1
WP_002403734.1\|890491_891061_-	DUF3221 domain-containing protein	NA	NA	NA	NA
WP_010708310.1\|891241_891670_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_002403736.1\|891687_892077_-	helix-turn-helix transcriptional regulator	A0A0M4QX29	Bacillus_phage	9.7e-26	50.0
WP_002403737.1\|892366_892567_+	helix-turn-helix transcriptional regulator	A0A1X9IGD3	Lactococcus_phage	1.9e-09	46.2
WP_010708312.1\|892570_892855_+	hypothetical protein	NA	NA	NA	NA
WP_010708313.1\|892868_893591_+	ORF6C domain-containing protein	D2IYT0	Enterococcus_phage	2.1e-42	62.7
WP_002357001.1\|893616_893805_-	YegP family protein	NA	NA	NA	NA
WP_010708314.1\|893859_894054_+	hypothetical protein	D2IZ57	Enterococcus_phage	7.1e-30	100.0
WP_002396620.1\|894044_894230_+	hypothetical protein	D2IZ58	Enterococcus_phage	1.1e-22	94.7
WP_010708315.1\|894274_894610_+	hypothetical protein	NA	NA	NA	NA
WP_002364220.1\|894609_894837_+	hypothetical protein	D2IZX4	Enterococcus_phage	8.6e-35	97.3
WP_010708317.1\|894934_895876_+	YqaJ viral recombinase family protein	D2IZK1	Enterococcus_phage	2.9e-177	99.7
WP_010708318.1\|895974_896865_+	recombinase RecT	D2IYT9	Enterococcus_phage	1.7e-163	99.7
WP_002364216.1\|896878_897841_+	DUF4373 domain-containing protein	D2IZR2	Enterococcus_phage	5.9e-149	90.9
WP_010712209.1\|897844_898147_+	hypothetical protein	D2IZR3	Enterococcus_phage	1.2e-47	99.0
WP_010712210.1\|898147_898447_+	hypothetical protein	D2IZY1	Enterococcus_phage	2.3e-43	90.9
WP_025189337.1\|898455_898890_+	RusA family crossover junction endodeoxyribonuclease	D2IYU2	Enterococcus_phage	4.3e-59	81.6
WP_010708408.1\|899641_899785_+	hypothetical protein	D2IYU4	Enterococcus_phage	2.3e-17	100.0
WP_016024448.1\|899931_900396_+	class I SAM-dependent methyltransferase	D2IYU6	Enterococcus_phage	5.4e-92	100.0
WP_010708007.1\|900397_900718_+	hypothetical protein	D2IYU7	Enterococcus_phage	1.1e-56	100.0
WP_010708410.1\|900738_901107_+	hypothetical protein	D2IYU8	Enterococcus_phage	5.7e-68	100.0
WP_010708411.1\|901096_901405_+	hypothetical protein	D2IZ76	Enterococcus_phage	1.4e-59	100.0
WP_010708412.1\|901401_901761_+	hypothetical protein	D2IYU9	Enterococcus_phage	2.2e-64	100.0
WP_002414887.1\|901760_901898_+	hypothetical protein	D2IYV0	Enterococcus_phage	4.7e-20	100.0
WP_010712215.1\|901894_902401_+	DUF1642 domain-containing protein	D2IYV1	Enterococcus_phage	2.0e-92	100.0
WP_002380820.1\|902404_902605_+	hypothetical protein	D2IYV2	Enterococcus_phage	1.8e-31	100.0
WP_010708414.1\|902608_902809_+	hypothetical protein	D2IYV3	Enterococcus_phage	6.0e-32	100.0
WP_010708415.1\|902812_903016_+	hypothetical protein	D2IYV4	Enterococcus_phage	1.8e-31	97.0
WP_002364337.1\|903405_903822_+	autolysin	D2IZL7	Enterococcus_phage	7.1e-67	97.8
WP_010712216.1\|904637_904868_+	hypothetical protein	NA	NA	NA	NA
WP_002364295.1\|904899_905334_+\|terminase	terminase small subunit	A7J290	Streptococcus_phage	1.8e-44	64.5
WP_002369892.1\|905314_906598_+\|terminase	PBSX family phage terminase large subunit	Q9AZ91	Lactobacillus_prophage	6.0e-157	65.5
WP_002388192.1\|906597_908082_+\|portal	phage portal protein	A0A097QPZ5	Enterococcus_phage	5.5e-138	98.4
WP_033593778.1\|908074_909001_+\|capsid	minor capsid protein	A0A097QPZ9	Enterococcus_phage	1.8e-131	98.4
WP_002378456.1\|909105_909759_+	hypothetical protein	NA	NA	NA	NA
WP_010816897.1\|909772_910669_+	hypothetical protein	U3PDP8	Lactobacillus_phage	3.3e-69	49.5
WP_002363369.1\|910739_911072_+\|head,tail	phage head-tail connector protein	A0A1W6JNH7	Staphylococcus_phage	2.7e-08	38.5
WP_002378454.1\|911068_911344_+	hypothetical protein	NA	NA	NA	NA
WP_010816898.1\|911340_911679_+	HK97 gp10 family phage protein	A0A1L2K255	Streptococcus_phage	4.8e-13	39.6
WP_002363373.1\|911675_912068_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002364302.1\|912086_912692_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_010830978.1\|912694_913003_+	hypothetical protein	L0P8M2	Lactobacillus_phage	2.7e-07	77.1
WP_002409775.1\|913065_913464_+	hypothetical protein	NA	NA	NA	NA
WP_002364305.1\|913532_913838_+	hypothetical protein	NA	NA	NA	NA
WP_010830977.1\|913824_918279_+\|tail	phage tail tape measure protein	M1PKM6	Streptococcus_phage	4.9e-89	48.7
WP_002363380.1\|918275_918998_+	hypothetical protein	C5IUK4	Streptococcus_phage	1.2e-42	39.2
WP_002378447.1\|918997_920443_+\|tail	phage tail protein	A0A1X9IGI5	Lactococcus_phage	9.0e-77	39.2
WP_002363383.1\|920448_921189_+	hypothetical protein	A0A1X9IGH6	Lactococcus_phage	1.2e-27	34.6
WP_002363384.1\|921205_921658_+	hypothetical protein	C0LZY6	Enterococcus_phage	3.3e-17	40.3
WP_002363385.1\|921676_922072_+	hypothetical protein	NA	NA	NA	NA
WP_002368228.1\|922073_922196_+	XkdX family protein	NA	NA	NA	NA
WP_002364623.1\|922206_922416_+	hypothetical protein	NA	NA	NA	NA
WP_010712219.1\|922468_923575_+	SH3 domain-containing protein	V5URN7	Enterococcus_phage	3.5e-89	52.6
WP_010712220.1\|924254_924443_+	hypothetical protein	A0A0S2MYG1	Enterococcus_phage	3.8e-28	100.0
WP_010712221.1\|924443_925037_-	TIR domain-containing protein	A0A0S2MYG4	Enterococcus_phage	8.7e-111	99.0
WP_010712222.1\|925053_925482_-	DUF4231 domain-containing protein	A0A0S2MYH2	Enterococcus_phage	9.5e-75	100.0
WP_010708355.1\|925729_925981_+	hypothetical protein	NA	NA	NA	NA
WP_002363390.1\|926001_926253_-	hypothetical protein	A0A097BYB1	Enterococcus_phage	4.6e-21	66.2
926446:926473	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1233518 : 1251290

Enterococcus_phage(46.15%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002357859.1\|1233518_1235915_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.7e-19	24.1
WP_002357858.1\|1235939_1236290_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_002393873.1\|1236372_1236603_+	hypothetical protein	NA	NA	NA	NA
WP_002382232.1\|1236662_1237148_-	toxin	A0A097BY56	Enterococcus_phage	4.4e-60	70.5
WP_002357856.1\|1237182_1237665_-	helix-turn-helix transcriptional regulator	R9QTP6	Staphylococcus_phage	1.2e-20	48.6
WP_002392532.1\|1238061_1238817_+	DnaD domain protein	A0A0K0MX39	Streptococcus_phage	8.7e-31	56.0
WP_002381951.1\|1238835_1239678_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	2.6e-31	31.0
WP_002357852.1\|1239744_1240137_+	hypothetical protein	NA	NA	NA	NA
WP_002357851.1\|1240156_1240564_+	RinA family phage transcriptional activator	NA	NA	NA	NA
WP_002382237.1\|1240785_1241202_+	hypothetical protein	NA	NA	NA	NA
WP_002381948.1\|1241214_1241727_+\|tail	phage major tail protein, TP901-1 family	W6LP72	Streptococcus_phage	8.8e-35	49.4
WP_002357848.1\|1241759_1242119_+	hypothetical protein	A0A0F6N4J9	Staphylococcus_phage	7.6e-09	32.2
WP_002392533.1\|1242211_1242505_+	hypothetical protein	NA	NA	NA	NA
WP_002381946.1\|1242494_1245428_+	membrane protein	W8EBC4	Geobacillus_phage	5.3e-15	41.2
WP_002357845.1\|1245429_1246356_+\|tail	phage tail family protein	C9E2K5	Enterococcus_phage	2.6e-146	78.2
WP_002357844.1\|1246368_1247826_+\|tail	phage tail protein	C9E2K6	Enterococcus_phage	9.5e-175	47.7
WP_002357843.1\|1247858_1249628_+	hypothetical protein	A0A097BYA8	Enterococcus_phage	1.8e-143	72.3
WP_002357842.1\|1249651_1250047_+\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	2.8e-33	48.9
WP_002385959.1\|1250165_1251290_+	SH3 domain-containing protein	A0A139ZVY1	Enterococcus_phage	2.0e-76	44.3

DBSCAN-SWA_6

1691030 : 1699674

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002381817.1\|1691030_1691603_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.4e-25	35.1
WP_002381816.1\|1691599_1692631_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	2.2e-56	45.6
WP_002398736.1\|1692632_1694072_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-49	33.0
WP_002381812.1\|1694047_1696267_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.7e-146	39.9
WP_002364085.1\|1696263_1696938_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_002357271.1\|1696938_1697190_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002357270.1\|1697203_1697917_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3ELR0	Synechococcus_phage	4.3e-48	43.0
WP_002381811.1\|1698068_1699193_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002378405.1\|1699185_1699674_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.4e-19	42.0

DBSCAN-SWA_7

1814560 : 1868194

Enterococcus_phage(36.67%)

portal,tail,plate,tRNA,terminase,integrase,holin

attL 1829962:1829980|attR 1868250:1868268

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002357083.1\|1814560_1816330_-\|tRNA	aspartate--tRNA ligase	A0A2K9L424	Tupanvirus	3.0e-13	30.3
WP_002381748.1\|1816347_1817649_-\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	1.3e-21	26.4
WP_002357080.1\|1818006_1818453_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_002381746.1\|1818476_1820690_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.3e-10	38.0
WP_002357078.1\|1820904_1821657_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_002357075.1\|1821658_1822606_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_002398619.1\|1822621_1823116_-	DUF3013 family protein	NA	NA	NA	NA
WP_002364174.1\|1823063_1823741_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_002381744.1\|1823869_1825147_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	3.1e-105	49.9
WP_002380425.1\|1825474_1825753_+	hypothetical protein	NA	NA	NA	NA
WP_002357065.1\|1825929_1826403_+	universal stress protein	NA	NA	NA	NA
WP_002362052.1\|1826514_1827702_-	acetate kinase	NA	NA	NA	NA
WP_002357063.1\|1827726_1828734_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002381743.1\|1828862_1829216_-	hypothetical protein	NA	NA	NA	NA
WP_002381742.1\|1829229_1829649_-	ComGF family competence protein	NA	NA	NA	NA
WP_002365830.1\|1829638_1830010_-	type II secretion system protein	NA	NA	NA	NA
1829962:1829980	attL	NA	NA	NA	NA
WP_002364185.1\|1830764_1831706_-	ferrochelatase	NA	NA	NA	NA
WP_002357054.1\|1832443_1832695_-	hypothetical protein	NA	NA	NA	NA
WP_002357053.1\|1832765_1832966_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.6e-24	80.3
WP_138067788.1\|1833802_1835044_-	LysM peptidoglycan-binding domain-containing protein	A0A0S2MYF3	Enterococcus_phage	8.6e-169	71.7
WP_002384371.1\|1835044_1835278_-\|holin	phage holin	D2J020	Enterococcus_phage	1.9e-29	87.8
WP_002364191.1\|1835270_1835492_-	hypothetical protein	D2J019	Enterococcus_phage	2.5e-31	93.2
WP_002364192.1\|1835526_1835682_-	XkdX family protein	A0A1W6JQ64	Staphylococcus_phage	7.2e-09	55.6
WP_002389262.1\|1835683_1836004_-	hypothetical protein	NA	NA	NA	NA
WP_002364194.1\|1836017_1836509_-	hypothetical protein	NA	NA	NA	NA
WP_002357046.1\|1836508_1836796_-	collagen-like protein	NA	NA	NA	NA
WP_002357045.1\|1836792_1837389_-	hypothetical protein	NA	NA	NA	NA
WP_002387290.1\|1837381_1838263_-\|plate	phage baseplate upper protein	Q9AYV5	Lactococcus_phage	8.6e-14	28.6
WP_171011759.1\|1838281_1841089_-\|tail	phage tail protein	Q9AZX5	Lactococcus_phage	9.8e-144	38.7
WP_002403868.1\|1841070_1841805_-\|tail	tail protein	NA	NA	NA	NA
WP_171011760.1\|1841794_1844692_-	tape measure protein	D7RWD8	Brochothrix_phage	4.9e-82	46.7
WP_002397453.1\|1844939_1845290_-	hypothetical protein	A0A2H4JAA8	uncultured_Caudovirales_phage	4.5e-06	34.6
WP_002407272.1\|1845342_1846191_-	Ig-like domain-containing protein	A0A288TYF3	Enterococcus_phage	3.2e-05	42.5
WP_002357037.1\|1846191_1846566_-	hypothetical protein	NA	NA	NA	NA
WP_002357036.1\|1846568_1846967_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_010707371.1\|1846959_1847328_-	hypothetical protein	NA	NA	NA	NA
WP_002387282.1\|1847324_1847669_-	hypothetical protein	NA	NA	NA	NA
WP_002387281.1\|1847682_1847865_-	hypothetical protein	NA	NA	NA	NA
WP_138067791.1\|1847893_1848781_-	DUF5309 domain-containing protein	NA	NA	NA	NA
WP_010707369.1\|1848794_1849418_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_002380436.1\|1849636_1849957_-	hypothetical protein	NA	NA	NA	NA
WP_002397460.1\|1850015_1850261_-	hypothetical protein	NA	NA	NA	NA
WP_138067792.1\|1850265_1851963_-	hypothetical protein	NA	NA	NA	NA
WP_048963424.1\|1851940_1853410_-\|portal	phage portal protein	A0A0A7AQF2	Bacillus_phage	1.3e-30	25.5
WP_048963426.1\|1853422_1854811_-\|terminase	phage terminase large subunit	Q9AZ66	Lactococcus_phage	8.2e-176	67.2
WP_048963427.1\|1854803_1855265_-	helix-turn-helix domain-containing protein	D2IZL8	Enterococcus_phage	1.8e-55	71.9
WP_048963428.1\|1855326_1855914_-	hypothetical protein	NA	NA	NA	NA
WP_048963429.1\|1855885_1856779_-	DUF4747 family protein	NA	NA	NA	NA
WP_002364209.1\|1857494_1857911_-	autolysin	D2IZ17	Enterococcus_phage	8.4e-68	100.0
WP_002402491.1\|1858817_1859252_-	RusA family crossover junction endodeoxyribonuclease	D2IYU2	Enterococcus_phage	2.8e-58	80.7
WP_002372047.1\|1859260_1859560_-	hypothetical protein	D2IZY1	Enterococcus_phage	1.3e-43	90.9
WP_002368214.1\|1859560_1859863_-	hypothetical protein	D2IZR3	Enterococcus_phage	1.6e-47	99.0
WP_002402489.1\|1859859_1860720_-	helix-turn-helix domain-containing protein	A0A2P1CD59	Lactobacillus_phage	3.7e-25	59.6
WP_010715320.1\|1860719_1860920_-	hypothetical protein	NA	NA	NA	NA
WP_002402487.1\|1860924_1861566_-	hypothetical protein	U5U4M2	Lactobacillus_phage	6.3e-30	36.0
WP_010707360.1\|1861570_1862305_-	ERF family protein	A0A2H4J5X9	uncultured_Caudovirales_phage	2.3e-20	35.4
WP_002402485.1\|1862297_1862615_-	hypothetical protein	NA	NA	NA	NA
WP_002402484.1\|1862810_1863149_-	hypothetical protein	NA	NA	NA	NA
WP_002378465.1\|1863185_1863395_-	hypothetical protein	D2IZ57	Enterococcus_phage	8.8e-18	74.2
WP_002357001.1\|1863449_1863638_+	YegP family protein	NA	NA	NA	NA
WP_002387270.1\|1863663_1864386_-	phage regulatory protein	D2IYT0	Enterococcus_phage	5.6e-43	46.5
WP_002403885.1\|1864408_1864720_-	hypothetical protein	NA	NA	NA	NA
WP_002383936.1\|1864731_1864923_-	hypothetical protein	NA	NA	NA	NA
WP_002387267.1\|1865218_1865560_+	helix-turn-helix transcriptional regulator	A0A1P8BMG3	Lactococcus_phage	3.2e-17	46.8
WP_002387266.1\|1865564_1866215_+	ImmA/IrrE family metallo-endopeptidase	S4U0J6	uncultured_phage	9.2e-13	29.9
WP_002387265.1\|1866310_1866940_+	SHOCT domain-containing protein	O48432	Lactobacillus_phage	2.7e-09	33.6
WP_002387264.1\|1867045_1868194_+\|integrase	site-specific integrase	A0A1C8E994	Bacillus_phage	1.1e-37	29.9
1868250:1868268	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1932101 : 2034760

118

Enterococcus_phage(72.06%)

portal,capsid,tail,tRNA,protease,terminase,integrase,holin,head

attL 1975018:1975044|attR 2015149:2015175

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002411411.1\|1932101_1933031_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_010816140.1\|1933031_1933778_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	2.1e-13	41.2
WP_002411413.1\|1933934_1934885_-	GDP-mannose 4,6-dehydratase	A0A1V0SKV4	Klosneuvirus	2.6e-48	36.1
WP_002411414.1\|1935096_1936644_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_033919481.1\|1937040_1937931_-	hypothetical protein	NA	NA	NA	NA
WP_002411416.1\|1937927_1939388_-	O-antigen polysaccharide polymerase Wzy family protein	NA	NA	NA	NA
WP_002411417.1\|1939415_1940393_-	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	1.0e-07	33.9
WP_002411418.1\|1940394_1941453_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_002378508.1\|1941465_1942170_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_102990694.1\|1942724_1945868_-	GW domain-containing glycosaminoglycan-binding protein	D6PSS2	Lactobacillus_phage	1.2e-17	27.0
WP_002410863.1\|1946187_1947030_-	LicD family protein	NA	NA	NA	NA
WP_002410862.1\|1947045_1947879_-	glycosyltransferase	F2Y1U7	Organic_Lake_phycodnavirus	4.1e-13	31.6
WP_002410860.1\|1947999_1949397_-	sugar transferase	NA	NA	NA	NA
WP_002410859.1\|1949502_1950804_-	EpaQ family protein	NA	NA	NA	NA
WP_002383759.1\|1950832_1952836_-	hypothetical protein	NA	NA	NA	NA
WP_002381678.1\|1952836_1954978_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002381677.1\|1954989_1958133_-	glycosyltransferase	NA	NA	NA	NA
WP_002356901.1\|1958122_1959340_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-08	24.0
WP_002356900.1\|1959352_1960147_-	ABC transporter permease	NA	NA	NA	NA
WP_002356899.1\|1960394_1960736_+	hypothetical protein	NA	NA	NA	NA
WP_002356898.1\|1960809_1961160_-	DUF2304 domain-containing protein	NA	NA	NA	NA
WP_002359897.1\|1961159_1961885_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002356895.1\|1961943_1962786_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	4.2e-26	33.2
WP_002359895.1\|1962878_1963907_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.9e-68	41.9
WP_002356893.1\|1963931_1964504_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.4e-41	50.3
WP_002364387.1\|1964516_1965383_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.1e-105	63.9
WP_002362119.1\|1965504_1966218_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002381673.1\|1966221_1967049_-	glycosyltransferase	NA	NA	NA	NA
WP_002359892.1\|1967048_1967837_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002366956.1\|1967958_1969095_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_002383768.1\|1969205_1970114_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_002381672.1\|1970129_1970894_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_002356885.1\|1971068_1971512_+	flavodoxin	NA	NA	NA	NA
WP_002356884.1\|1971586_1972060_-	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_002356883.1\|1972217_1972790_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002362125.1\|1973040_1974279_+	aminopeptidase	NA	NA	NA	NA
WP_002381671.1\|1974538_1974919_+	PH domain-containing protein	A6N235	Microbacterium_phage	2.5e-10	33.0
1975018:1975044	attL	NA	NA	NA	NA
WP_002381670.1\|1975290_1975872_+	DUF4950 domain-containing protein	C9E2L5	Enterococcus_phage	3.2e-65	98.4
WP_002381669.1\|1976248_1977751_+	glucosyltransferase domain-containing protein	C9E2L4	Enterococcus_phage	2.5e-271	98.2
WP_002381668.1\|1977814_1979107_-	peptidoglycan DD-metalloendopeptidase family protein	C9E2L3	Enterococcus_phage	1.7e-252	99.8
WP_002369082.1\|1979168_1979549_-	hypothetical protein	C9E2L2	Enterococcus_phage	1.1e-63	100.0
WP_002381667.1\|1979561_1980821_-	LysM peptidoglycan-binding domain-containing protein	A0A0S2MYF3	Enterococcus_phage	8.3e-228	93.3
WP_002381666.1\|1980826_1981030_-\|holin	holin	C9E2L0	Enterococcus_phage	1.2e-30	100.0
WP_002381665.1\|1981026_1981254_-	hypothetical protein	A0A0S2MYL7	Enterococcus_phage	1.3e-30	98.6
WP_002381664.1\|1981327_1983091_-	hypothetical protein	C9E2K8	Enterococcus_phage	4.8e-266	98.1
WP_002369077.1\|1983101_1983275_-	hypothetical protein	A0A097BYC2	Enterococcus_phage	3.1e-24	100.0
WP_002398582.1\|1983275_1985294_-\|tail	phage tail protein	A0A0S2MYF5	Enterococcus_phage	7.6e-308	99.1
WP_002373078.1\|1985310_1986240_-\|tail	phage tail family protein	A0A097BY64	Enterococcus_phage	8.1e-172	99.4
WP_002398581.1\|1986240_1989648_-	tape measure protein	A0A0S2MYN1	Enterococcus_phage	0.0e+00	97.3
WP_002381661.1\|1989663_1989921_-	hypothetical protein	A0A097BYA4	Enterococcus_phage	7.0e-41	100.0
WP_002398580.1\|1990013_1990364_-	hypothetical protein	A0A097BYB6	Enterococcus_phage	1.2e-56	99.1
WP_002398579.1\|1990419_1990878_-	hypothetical protein	A0A097BY60	Enterococcus_phage	6.6e-74	96.1
WP_002381658.1\|1990955_1991486_-\|tail	phage major tail protein, TP901-1 family	A0A097BY59	Enterococcus_phage	1.4e-88	94.9
WP_002381657.1\|1991501_1991891_-	hypothetical protein	A0A097BY96	Enterococcus_phage	5.1e-67	100.0
WP_002373070.1\|1991887_1992268_-	hypothetical protein	A0A0S2MYE9	Enterococcus_phage	7.9e-65	99.2
WP_002381656.1\|1992242_1992578_-	hypothetical protein	A0A097BYB2	Enterococcus_phage	7.7e-56	96.4
WP_002373068.1\|1992574_1992907_-\|head,tail	phage head-tail connector protein	A0A097BY55	Enterococcus_phage	4.2e-54	100.0
WP_002381655.1\|1992980_1993913_-\|capsid	phage major capsid protein	A0A1B1V000	Enterococcus_phage	8.7e-174	99.7
WP_002373065.1\|1993925_1994525_-	DUF4355 domain-containing protein	A0A097BY91	Enterococcus_phage	3.5e-75	98.5
WP_002381654.1\|1994719_1994941_-	hypothetical protein	A0A097BYA7	Enterococcus_phage	1.9e-34	98.6
WP_002381653.1\|1994937_1995207_-	hypothetical protein	A0A097BY49	Enterococcus_phage	6.4e-45	98.9
WP_002381652.1\|1995207_1996146_-\|capsid	minor capsid protein	A0A097BY50	Enterococcus_phage	4.5e-170	98.1
WP_002381651.1\|1996150_1997689_-\|portal	phage portal protein	A0A097BY86	Enterococcus_phage	1.8e-285	99.2
WP_002381650.1\|1997702_1999091_-\|terminase	terminase	A0A097BY88	Enterococcus_phage	9.4e-273	99.6
WP_002398576.1\|1999083_1999557_-\|terminase	terminase small subunit	Q9XJG1	Enterococcus_phage	7.4e-20	51.4
WP_002381648.1\|1999624_2000269_-	hypothetical protein	NA	NA	NA	NA
WP_002381647.1\|2000518_2000926_-	transcriptional regulator	A0A1B0YC57	Lactobacillus_phage	2.1e-15	34.8
WP_002381645.1\|2000926_2001118_-	hypothetical protein	A0A0S2MYC5	Enterococcus_phage	3.3e-27	96.6
WP_002398575.1\|2001121_2001322_-	hypothetical protein	A0A0S2MYB9	Enterococcus_phage	5.6e-30	95.5
WP_002381643.1\|2001322_2001901_-	DUF1642 domain-containing protein	A0A141E1K4	Streptococcus_phage	1.9e-14	38.2
WP_002381642.1\|2001876_2002116_-	hypothetical protein	NA	NA	NA	NA
WP_002398574.1\|2002324_2002492_-	hypothetical protein	A0A097BY78	Enterococcus_phage	4.0e-21	94.5
WP_002381640.1\|2002488_2002812_-	hypothetical protein	NA	NA	NA	NA
WP_002381639.1\|2002808_2003042_-	hypothetical protein	A0A096XT61	Enterococcus_phage	1.3e-14	52.8
WP_002381638.1\|2003038_2003374_-	hypothetical protein	A8E2L3	Enterococcus_phage	2.9e-26	76.4
WP_002398573.1\|2003374_2003806_-	hypothetical protein	D2IYU8	Enterococcus_phage	5.7e-27	81.4
WP_025187485.1\|2003789_2003975_-	hypothetical protein	D2IZY7	Enterococcus_phage	1.0e-25	96.6
WP_002381636.1\|2003990_2004197_-	hypothetical protein	A0A1B1V001	Enterococcus_phage	9.6e-25	98.4
WP_002381635.1\|2004216_2004546_-	hypothetical protein	NA	NA	NA	NA
WP_002381634.1\|2004558_2005086_-	single-stranded DNA-binding protein	A0A097PAQ3	Streptococcus_pyogenes_phage	2.4e-43	56.6
WP_002381633.1\|2005075_2005384_-	hypothetical protein	D2IZR4	Enterococcus_phage	1.6e-44	90.9
WP_002381632.1\|2005383_2006190_-	helix-turn-helix domain-containing protein	A0A2D1GQ66	Lysinibacillus_phage	2.7e-22	54.4
WP_002381630.1\|2006193_2006835_-	hypothetical protein	U5U4M2	Lactobacillus_phage	1.1e-29	35.1
WP_002381629.1\|2006839_2007856_-	AAA family ATPase	A0A0S2SY47	Bacillus_phage	9.2e-60	43.2
WP_002381628.1\|2007867_2008347_-	siphovirus Gp157 family protein	E5DV79	Deep-sea_thermophilic_phage	1.2e-33	48.4
WP_002381627.1\|2008538_2008841_-	hypothetical protein	NA	NA	NA	NA
WP_002381626.1\|2008948_2009122_-	hypothetical protein	C9E2M5	Enterococcus_phage	5.2e-24	98.2
WP_002381625.1\|2009133_2009319_-	hypothetical protein	D2IZW5	Enterococcus_phage	8.3e-20	88.3
WP_010783588.1\|2009524_2009731_+	KTSC domain-containing protein	D2IZW7	Enterococcus_phage	3.9e-26	80.9
WP_002381624.1\|2009731_2009890_-	hypothetical protein	D2IZW6	Enterococcus_phage	2.4e-15	82.4
WP_002381623.1\|2009903_2010200_-	hypothetical protein	NA	NA	NA	NA
WP_002381621.1\|2010201_2010954_-	Rha family transcriptional regulator	R9QMZ3	Lactococcus_phage	4.4e-43	40.2
WP_002381619.1\|2010973_2011225_-	hypothetical protein	A0A0S2MYC6	Enterococcus_phage	8.9e-41	96.3
WP_002369031.1\|2011263_2011527_-	helix-turn-helix transcriptional regulator	A0A097BY21	Enterococcus_phage	1.6e-40	98.9
WP_002381618.1\|2011665_2012190_+	helix-turn-helix transcriptional regulator	A0A097BY22	Enterococcus_phage	7.8e-87	95.4
WP_079999058.1\|2012164_2012680_+	toxin	A0A0S2MYA6	Enterococcus_phage	7.6e-87	100.0
WP_002381616.1\|2012769_2013654_+	Ltp family lipoprotein	A0A097BY58	Enterococcus_phage	1.8e-128	97.2
WP_002389940.1\|2013669_2013870_+	hypothetical protein	A0A097BY73	Enterococcus_phage	1.6e-29	100.0
WP_002381615.1\|2013937_2015074_+\|integrase	site-specific integrase	A0A0S2MYI6	Enterococcus_phage	5.4e-210	99.2
WP_002374442.1\|2015267_2015789_-	nucleoside deaminase	NA	NA	NA	NA
2015149:2015175	attR	NA	NA	NA	NA
WP_002398570.1\|2015866_2016718_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002379617.1\|2016774_2017620_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_002356871.1\|2017646_2017985_-	hypothetical protein	NA	NA	NA	NA
WP_002384290.1\|2018068_2018773_-	zinc metallopeptidase	NA	NA	NA	NA
WP_002398569.1\|2018971_2019325_+	YxeA family protein	NA	NA	NA	NA
WP_002356866.1\|2019362_2020367_-	nucleoid-associated protein	A0A090D855	Clostridium_phage	8.6e-10	22.3
WP_002383776.1\|2020494_2021961_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_002366964.1\|2022173_2022554_+	VOC family protein	NA	NA	NA	NA
WP_002356863.1\|2022575_2023058_+	SRPBCC family protein	NA	NA	NA	NA
WP_002381614.1\|2023101_2024202_-	FUSC family protein	NA	NA	NA	NA
WP_002381613.1\|2024374_2026516_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_002381612.1\|2026556_2028038_-	response regulator transcription factor	NA	NA	NA	NA
WP_002398568.1\|2028049_2029780_-	sensor histidine kinase	NA	NA	NA	NA
WP_002381610.1\|2029733_2030369_-	DUF624 domain-containing protein	NA	NA	NA	NA
WP_002369012.1\|2030439_2031906_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_002359877.1\|2031929_2032853_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002356852.1\|2032864_2033821_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_002398566.1\|2034172_2034760_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_9

2383441 : 2393181

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002382497.1\|2383441_2385625_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	4.0e-286	66.8
WP_002356379.1\|2385657_2386254_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	6.0e-51	56.4
WP_002381412.1\|2386298_2387417_-	DNA polymerase IV	NA	NA	NA	NA
WP_002381411.1\|2387542_2388301_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_002356375.1\|2388284_2388947_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	6.7e-19	31.1
WP_002359438.1\|2388961_2389834_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.1e-80	57.2
WP_002381410.1\|2389945_2390293_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.2e-16	37.6
WP_002356371.1\|2390285_2391125_-	stage 0 sporulation family protein	NA	NA	NA	NA
WP_002381409.1\|2391241_2392192_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.8e-34	33.0
WP_002356367.1\|2392193_2392523_-	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_002356366.1\|2392542_2393181_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.1e-54	53.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR594051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection