CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR595898	Burkholderia pseudomallei isolate UKMR15 chromosome 1	2 crisprs	DinG,RT,csa3,DEDDh,cas3,WYL,PrimPol	2	3	7	0
NZ_LR595899	Burkholderia pseudomallei isolate UKMR15 chromosome 2	2 crisprs	cas3,DinG,csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR595898_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR595898_1

320878-321006

Orphan

Consensus_repeat	Method
GGCTGATCGAAGTGGCTGATCGAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LR595898_1

>merge|NZ_LR595898|1|320878-321006|CRISPRCasFinder
GGCGGATCGAGGCGGCTCATCGAAGCGATCAATCGAAGCGATCAATCGAAGCGGCCGATCGAAGCGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAG

>NZ_LR595898|1|1|320878-321006|CRISPRCasFinder
GGCGGATCGAGGCGGCTCATCGAAG	CGATCAATCGAAGCGATCAATCGAAGC
GGCCGATCGAAGCGGCTGATCGAAG	TGGCTGATCGAAGTGGCTGATCGAAGT
GGCTGATCGAAGTGGCTGATCGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR595898.1\|WP_004189576.1\|320239_320440_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NZ_LR595898.1\|WP_009928467.1\|312298_313975_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|334596
NZ_LR595898.1\|WP_004201432.1\|333476_333860_+\|avidin	unknown	unknown	gnl\|CDD\|366604
NZ_LR595898.1\|WP_004197840.1\|318551_319055_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_004189990.1\|316917_318258_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_LR595898.1\|WP_004537779.1\|314544_314769_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_004545640.1\|326198_326675_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_009951739.1\|324819_325668_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_LR595898.1\|WP_004531011.1\|321071_323600_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_LR595898.1\|WP_004188983.1\|332871_333213_+\|copper-binding-protein	unknown	unknown	gnl\|CDD\|378683
NZ_LR595898.1\|WP_009972726.1\|311185_311509_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_009972735.1\|326773_328075_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_LR595898.1\|WP_004523028.1\|310743_311004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_004197835.1\|312039_312180_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_004525931.1\|329662_332875_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_LR595898.1\|WP_004189043.1\|314965_316327_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_LR595898.1\|WP_004545680.1\|324148_324823_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_LR595898.1\|WP_004550954.1\|325667_326165_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|226285
NZ_LR595898.1\|WP_004525920.1\|319162_319870_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_009951748.1\|328085_329666_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|236625

Protein	Function_ID	Function_description	E-value
NZ_LR595898.1\|WP_004189576.1\|320239_320440_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	3.06996e-08
NZ_LR595898.1\|WP_009928467.1\|312298_313975_+\|divalent-metal-cation-transporter	gnl\|CDD\|334596	pfam01566, Nramp, Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.	2.25202e-84
NZ_LR595898.1\|WP_009951748.1\|328085_329666_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|236625	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional.	1.35961e-83
NZ_LR595898.1\|WP_004189990.1\|316917_318258_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LR595898.1\|WP_004201432.1\|333476_333860_+\|avidin	gnl\|CDD\|366604	pfam01382, Avidin, Avidin family.	9.764e-29
NZ_LR595898.1\|WP_009951739.1\|324819_325668_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.18394e-64
NZ_LR595898.1\|WP_004531011.1\|321071_323600_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_LR595898.1\|WP_004188983.1\|332871_333213_+\|copper-binding-protein	gnl\|CDD\|378683	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF. CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.	2.10207e-17
NZ_LR595898.1\|WP_009972735.1\|326773_328075_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.09846e-16
NZ_LR595898.1\|WP_004525931.1\|329662_332875_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_LR595898.1\|WP_004189043.1\|314965_316327_+\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_LR595898.1\|WP_004545680.1\|324148_324823_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	5.65286e-78
NZ_LR595898.1\|WP_004550954.1\|325667_326165_+\|TPM-domain-containing-protein	gnl\|CDD\|226285	COG3762, COG3762, Predicted membrane protein [Function unknown].	3.88895e-21

>NZ_LR595898.1|WP_004189576.1|320239_320440_+|heavy-metal-associated-domain-containing-protein
MKLEVKDMSCGGCANAITQAIQTADSSARVSVDVASKVVDVGSALGIERVVAIIEAAGFHPAVLAA
>NZ_LR595898.1|WP_004525920.1|319162_319870_+|hypothetical-protein
MRAAVAAAAFSASLPAGAAGPAIDPGRYLYVEGGSAHGVLTVKGNAFEIETIGGNCHTCALSGTFDGRVGIARDGENVCRIAVSGGHGDLRLDTSGSDACRDFCGMRASFDGEYRRPGAACTDRARDVRTERSHRQYAAHDYDAARTTLKALLAECGGFMGWIELDRAKSDLALTEYHRGDRAQCVAVLSDTIAYRAQQDHSDAFGLPPCDADNYKSTGDAILHNLALCQAPAKR
>NZ_LR595898.1|WP_004197840.1|318551_319055_+|hypothetical-protein
MFQMLPSMTFGRRLSVWWSCMWRQTLASAPVWILGVAIVGLSISRTHSAAGRPPSGGAAALAVATFFVCLVVCLPIAGYMVRGGFAAHALTAPERLAFRQALMVGLTTFGWAVLAALPISVATMPLRHAGYPLAGQAIGWVLNVAAGLYIVLPRQARRLRLLAGEAA
>NZ_LR595898.1|WP_004189990.1|316917_318258_+|argininosuccinate-synthase
MTTILENLPAGQKVGIAFSGGLDTSAALHWMRIKGAVPYAYTANLGQPDEDDYDAIPKRAIQYGAEGARLIDCRAQLVAEGIAALQCGAFHISTAGVTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLVNPDLKIYKPWLDQQFIDELGGRAEMSEFMRQAGFEYKMSAEKAYSTDSNLLGATHEAKDLESLESGIKIVNPIMGVAFWRDDVKIDKEEVTIRFEEGRPVALNGVEYKDAVALLLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALLYIAYERLVTGIHNEDTIEQYRENGRRLGRLLYQGRWFDPQAIMLRETAQRWVARAVTGEVTVELRRGNDYSIIGTRSPNLTYQPERLSMEKVQSMFSPRDRIGQLTMRNLDITDTRDKLRIYSQVGLLAAGESSALPKLKEDESGN
>NZ_LR595898.1|WP_004189043.1|314965_316327_+|glutathione-disulfide-reductase
MEFDYDLFVIGAGSGGVRLSRVAASYGARVGIAEEERIGGTCVLRGCIPKKLLVYASHYSHDVEDAAGYGWTFDIGLFSWPTLIEAKDREIARLSGIYVDLLNKSGVEIHTGRATLVGAHTVDVAGRRVTARHIAVATGSRPVLPPIPGIEHAITSREALELPELPQRIAIVGGGYIAVEFAGIFNGLGVDVDLFYRGEQILRGFDDDVRHALHGEMTKQGVAIHTRATIEAIERGADGGLTLRLAEGAYGPYDAVLYATGRVANGDGLGLEAVGVARDANGAIEVDAYSATTVPSIHAIGDVTARPQLTPVATRDGMLLAANLFGGKRIAADHRYVPSAVFSQPEIATVGLTEAQARAELGALDIYKTSFRALRHTLSGRDEKTFMKLVVARDSQRVVGAHMVGRDAAEIIQGIAIAIRAGATKAQFDETVGIHPTAAEEFVTLRQKEPDDA
>NZ_LR595898.1|WP_004537779.1|314544_314769_+|hypothetical-protein
MGILNTVGEIAGAVAAVEAAEKVDPDAGLLTKAAAAVAGFKGAEALENLVEKKKDDEAADGENTAAPDSDASQA
>NZ_LR595898.1|WP_009928467.1|312298_313975_+|divalent-metal-cation-transporter
MSTPTDISPPIALERDAVLDQAHVGDIKGAFGTIAHHDTAPRSGWWARVRTLLAILGPGLIVMVGDNDAGAFGTYTQAGQNYGTSLLWTLLLLVPVLFVNQEMVLRLGAVTGVGHARLIFERFGKFWGAFSVIDLFILNALTIVTEFIGITFVLDFFGVSKVAGVCIAAALTMAAVSTGDFRRFERFAVALCVLSLLLVPVLVSIHPPVHQMARDLFVPTWPAHAKRSDVMLLVIGIVGTTVAPWQLFFQQSYVIDKRITPRFIKYEKADLWIGIVLVMIGAIAMISFSAALYAGRPEAGGFTDAGGVIAGLAKYAGPTSATLFAIALLDACIIGAAAVSLATAYAIGDVFRIRHSLHRGVSDAKGFYLVYFGIVAAAAALVLMPGSPLGLLTEAVQTLAGVLLPSATVFLLLLCNDRAVLGPWVNSARLNLFTGAVVWVLVMLSIILTASVMYPDMSGEAMLEVLAGGTLFAALGLAATFVLRRRAGGADRANVAHDARDAHVDRAARDTWRMPPLDALPAPRVTLSTRIWMGVLRGYLMLAVGLVIVKVVQMAFFR
>NZ_LR595898.1|WP_004197835.1|312039_312180_+|hypothetical-protein
MQFGLLLSQLPHVDESRVHYDAMLSLKAAGEPASASFWQRLKALIS
>NZ_LR595898.1|WP_009972726.1|311185_311509_-|hypothetical-protein
MTGAKHRENNFRPAHAESFGAMQAARKLTGELARKQNRKESPYFMGFSGLIGRARSCASAQRLCHFYLPIFMRPAYNPPQFIKESHVDTSPGSSRPMPVGIGAAFAN
>NZ_LR595898.1|WP_004523028.1|310743_311004_-|hypothetical-protein
MLFQFLAVRFVHGPLFARRRRAAAARAPSALAMRPTVRARLPFIPRPAGCAIVAATAGAVALGALLSASGQQVGLNQAIRVSWWFS
>NZ_LR595898.1|WP_004531011.1|321071_323600_-|heavy-metal-translocating-P-type-ATPase
MTAAMPRRGDPTGGAFRPGSPPKTSTSTDATGALAMHDAHVHHDHSGDTNERRDPHRPHETKTPGETAVDPVCGMKVPIDTPRRYDYQGRTYRFCSDKCATAFRASPQRFVGTPKQRAGASAAKPGTVYTCPMHPQIRANAPGACPICGMALEPLTPDAAEDGNPELRSMTRRFELGLVLAVPLVLMTMGAMVLPFDIGAGIDALLARWPRPFGMPASWSQWVQAALATPVVLWGGWPFLVRGWKSFVTRRLNMFSLIGLGVCVAYLFSVFALLFPDTLPQAFRSGHEIPLYFEASAVIVTLVLLGQVLELRARSRTSSAIRDLLQLAPHTAVRVNPDGSEQTVPLDAVVVGDTLRVKPGSKVPVDGIVVAGHSSVDESMITGEPVPAEKTEGSPVTGATVNQTGTFVMRAQKIGTDTLLARIVQMVAEAGRSRAPIQKLADQVSGGFVLAVIVLAALAFAAWAAFGPAPALANALVVAISVLIIACPCALGLATPVSIIVGVGRGAREGVLIKDAEALELMEKVDTVVVDKTGTLTEGRPRVQTIVALGGQSERALLGDAASLEGASEHPLAQAIVEHAARMGAERKPVASFDSVPGKGVKGTLDARTVALGNAHLMADLAIDCTAADADSNRLREAGQTVMYVAIDGQLAGYIGVADPIKETTPDAVQLLKASGTRIVMLTGDNPVTANAVARTLSLDGVKAGVLPEDKYRHVQALQQQGHVVAMAGDGVNDAPALAQANVGIAMGTGTDVAMNSARIVLVKGDLRGIARARALSVATMKNIRQNLFFAFVYNAVGIPVAAGVLYPWFGITLSPIFASAAMAASSVSVIGNALRLRGAKT
>NZ_LR595898.1|WP_004545680.1|324148_324823_+|LemA-family-protein
MRFHSSAPRAAATRIRLIRAALLAAFALTLSGCGYNAIQVQDEQVKASWSEVLNQYQRRADLVPNLVNTVKGYANQERDVLTRVTEARAQVGSIRATPELLSDPQAFAKFDAAQGQLTSSLSRLLVVSENYPQLKSDANFRDLQAQLEGTENRITVARNRYIRSVQAYNTTIRSFPSNLTAMAFGYKEKPNFSVENEAQIAKPPRVDFGTSSAPAPAPAAGASN
>NZ_LR595898.1|WP_009951739.1|324819_325668_+|YgcG-family-protein
MKGFLRAACFAILTFLSIGGVCRAEQPVPPLAARVTDETGTLTAAERATLEQSLKDFETRKGSQIAVLIVPTTQPETIEQYSIRVVEQWKLGRANVDDGALLIIAKNDRALRIEVGYGLEGVLTDATSRRIIDELIVPSFRRGDFYGGVSAGVGGMMRVIEGEPLPPPRARGGEEGGLGRVLPLLFVMTIVAGGVSRAIFGRLAGSVVTGGVVGFVAWLWSGALLVAIAAAAIALFFTLLGSGMGARVGGPFIGGRGGRGGGNDGFRGGGGGFGGGGASGRW
>NZ_LR595898.1|WP_004550954.1|325667_326165_+|TPM-domain-containing-protein
MDIARIARHLSMTRWRVAAAFPKRTLGKIERAIEASHEKHVGQLRFAVEGALHASMLLRGITARERAIDVFSELRVWDTEHNNGVLIYLLLADHDVEIVADRGIHARVDGDEWERVCRAMEAQFRRGRFEAGSIHGIEAVTALLARHYPSRRAPGGAWPSTPVVL
>NZ_LR595898.1|WP_004545640.1|326198_326675_+|hypothetical-protein
MRAATCNPIASNIARRTANHGYFAALYSCAMKIVRLLLVLLWCATLPLTGLAASGLAGDCPMQQAMSMSEDGAMPSMQDCESMRSSVAGKSGKSGKSGEAANVFCKVMVQCQFGSLYHPMPAADVARPASPGRPLVFHYAKSLTVREPGGLWRPPRTA
>NZ_LR595898.1|WP_009972735.1|326773_328075_+|TolC-family-protein
MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQASVQASAELAVKAGQLPDPMLKAGIDNLPVDGPQRFTIGQESMTMRRIGIAQEWVSGDKRRLRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKKALALQRELADEMNRELAATQAAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWVAAPALDVAGEPPAPVSFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMVSIGVTIPLPLDRRDRQDRDVAQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLAELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLDARLQVLDLERDVARAWAQLDYQIVPSAMLAAAQ
>NZ_LR595898.1|WP_009951748.1|328085_329666_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNHIRLTRAALAVLAAVALSAAGYFAGARFGAHVDVAHRAHATNTTNTTNAADGADAKPGRKVLYWRDPMVPNQHFDKPGPSPFMNMPLEPVYADDGGGAPGVRIDPGLQQNLGIRYAKVRRRDVDEGFDAVGTTQFDESRTAVVQSRVTGYVDRLYASAPLQRIAKGAPIASLFVPDWLAPQEEYLALKRGAMDEALLAASRARMRALSIPDSVIANLDRTGRAQTHIVLASPETGVVSELNVRDGAMVTPGQTLAKIAGLSTLWAVIDVPEALASGVRPGMRVDATFEGDPQRRVSGAIREILPGVNATTRTLQARLELDNRALALTPGMLMRARVGASHAASRLVVPSDAVIATGKRSVVIVRTADDRLRPADVTVGRDAGDETEVLAGLEEGETVVASGQFLIDSEASLKSVLPRLEADASGALAARAARPPARSSPPPAQAGGAAPVYETTGKVEKITAADITFSHQPVPALGWGAMTMSFDKPAPAAFANVKAGDTVRFAFEANGDGYRLTKVEPVGGAR
>NZ_LR595898.1|WP_004525931.1|329662_332875_+|efflux-RND-transporter-permease-subunit
MIAHVIRWSIRNRLLVLLATALVAAWGVVSLNRTPLDALPDLSDTQVIVKASYPGKAPRVVEDQVTYPLTTTLLGVPGAKTIRAYSSFGDAFVYVLFDDRTDQYWARSRVLEYLNQVQGRLPQGASVALGPDATGVGWVYEYALVDRSGRRDLGELRALNDWFLKFELKAVPDVAEVASVGGMVRQYQVVLDPDRLRAFGITQAAVADALGKANSESGGSVVEMAESEYMVRASGYLRSLDDFRNVVLRTSESGTPVLLGDVARVQIGPEMRRGIAELNGEGEVAGGVIVMRSGKNALSTIEAVKAKLAELRRSLPAGVELVTTYDRSQLIGRAVDNLKDKLIEEFVVVGLVCALFLFHLRSAFVAILSLPLGVLAAFIVMRHQGVNANLMSLGGIAIAIGAMIDAAVVMIENAHKHLESHEHAHPGAPLSSAARWELIAASAAEVGPALFFSLLIVTLSFVPVFALEGQEGKLFAPLAFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPREASNPLNRLLVRLYRPLLEATLARPWRAIAIAAAALVLTAIPMSRLGGEFMPPLDEGDLLYMPTALPGISAQKAAELLQQTDRLIKTVPEVATVFGKSGRADTATDPAPLEMFETTIRFRPRGEWRPGMTPGRLVDELDRVVKVPGLSNVWVPPIRNRLDMLSTGIKTPVGVKIAGPELAQIDRIAAQVEAAVKRVPGVTSALAERLNGGRYVDVDIDRRAAARYGLSVGDVQAVVASAIGGENVGEVIAGRERFPINIRYPREVRDSLEKLRALPIVTERGAQILLRDVAAVTIADGPPMIRSENARLSGYVYVDIRGVDLKTAVGAMQRAVAQQVALPPGYSIAWSGQFEYLERAAATLRTVIPVTLAVIFVLLFLTFDSAADALLLMTTVPFALVGGLWFVWALGHAVSVATAVGFIALAGVAAEFGVVMLLYLKRAYERRIAAGEPPNEATLADAIREGAVLRVRPKAMTVAVVLAGLVPIMIGHGSGSEVMQRIAAPMVGGMVTAPLLSMFVIPAAWLLLQRRRMRGAARAASQAPVAGAAGADFSSIHTGESR
>NZ_LR595898.1|WP_004188983.1|332871_333213_+|copper-binding-protein
MKQWIAALMTLAAAAAPAFAAEAAAGPNTPAPPRDARPPAGDALTEAVVRQVDLATGMITLKHGALDNVGMPPMTMTFKAKDIAMAKRVRAGDSVRVRVENVDGVMTVVKLEK
>NZ_LR595898.1|WP_004201432.1|333476_333860_+|avidin
MQRLEHVLRRVKAGTGAPIDFSGTWKNELGSTMRIEQSGDSVSGTYESAVSENGGATSGQLSGYVDGDLIAFVVHWDQFQAITAWVGQGGPGASSDRINTLWQMTQQVEAGEEWASINAGADIFVKT

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Crispr_ID: NZ_LR595898_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR595898_2

1651171-1651283

Orphan

Consensus_repeat	Method
CAAGCACGACAAGCACGACAAGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LR595898_2

>merge|NZ_LR595898|2|1651171-1651283|CRISPRCasFinder
CAAACGCGGCGAGCGCGGCAAACGAGACCAACGCGGTGAGCATTGCAAGCACGACAAGCACGACAAGCACGACAAGCACGACAAGCACGACAAGCATGACAAGCATGACAAGC

>NZ_LR595898|2|2|1651171-1651283|CRISPRCasFinder
CAAACGCGGCGAGCGCGGCAAAC	GAGACCAACGCGGTGAGCATTG
CAAGCACGACAAGCACGACAAGC	ACGACAAGCACGACAAGCACGA
CAAGCATGACAAGCATGACAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR595898.1\|WP_004204967.1\|1636855_1639480_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_LR595898.1\|WP_004526810.1\|1653758_1654679_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_LR595898.1\|WP_004193713.1\|1662911_1663931_+\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_LR595898.1\|WP_004536288.1\|1652955_1653759_-\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|377429
NZ_LR595898.1\|WP_012730173.1\|1660744_1661794_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380535
NZ_LR595898.1\|WP_004526811.1\|1654675_1656661_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NZ_LR595898.1\|WP_004534679.1\|1648915_1649851_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
NZ_LR595898.1\|WP_004193399.1\|1646519_1646855_-\|YbjQ-family-protein	unknown	unknown	gnl\|CDD\|376657
NZ_LR595898.1\|WP_004521714.1\|1652134_1652839_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_LR595898.1\|WP_004192193.1\|1640005_1640971_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176133
NZ_LR595898.1\|WP_004526804.1\|1644899_1645577_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595898.1\|WP_004192697.1\|1659498_1660644_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_LR595898.1\|WP_004204969.1\|1635066_1636287_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
NZ_LR595898.1\|WP_011854063.1\|1648461_1648911_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_LR595898.1\|WP_050784990.1\|1662079_1662919_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_LR595898.1\|WP_004192588.1\|1647071_1648220_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341483
NZ_LR595898.1\|WP_004536490.1\|1643124_1644681_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_LR595898.1\|WP_004193543.1\|1645868_1646420_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|225373
NZ_LR595898.1\|WP_004193469.1\|1658685_1659486_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_LR595898.1\|WP_004534885.1\|1656671_1658672_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281

Protein	Function_ID	Function_description	E-value
NZ_LR595898.1\|WP_004204967.1\|1636855_1639480_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_LR595898.1\|WP_004526810.1\|1653758_1654679_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	1.81528e-159
NZ_LR595898.1\|WP_004193713.1\|1662911_1663931_+\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	2.42259e-150
NZ_LR595898.1\|WP_004536288.1\|1652955_1653759_-\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|377429	pfam04962, KduI, KduI/IolB family. This family includes the 5-keto 4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is involved in pectin degradation. This family aldo includes bacterial Myo-inositol catabolism (IolB) proteins. The Bacillus subtilis inositol operon (iolABCDEFGHIJ) is involved in myo-inositol catabolism. Glucose repression of the iol operon induced by inositol is exerted through catabolite repression mediated by CcpA and the iol induction system mediated by IolR. The exact function of IolB is unknown. Members of this family possess a Cupin like structure.	2.23898e-134
NZ_LR595898.1\|WP_012730173.1\|1660744_1661794_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380535	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	4.84243e-107
NZ_LR595898.1\|WP_004526811.1\|1654675_1656661_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NZ_LR595898.1\|WP_004534679.1\|1648915_1649851_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	3.16137e-52
NZ_LR595898.1\|WP_004193399.1\|1646519_1646855_-\|YbjQ-family-protein	gnl\|CDD\|376657	pfam01906, YbjQ_1, Putative heavy-metal-binding. From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerizes as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.	1.84837e-38
NZ_LR595898.1\|WP_004521714.1\|1652134_1652839_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	3.1646e-87
NZ_LR595898.1\|WP_004192193.1\|1640005_1640971_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176133	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.14697e-71
NZ_LR595898.1\|WP_004193543.1\|1645868_1646420_+\|NUDIX-domain-containing-protein	gnl\|CDD\|225373	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair].	5.41622e-23
NZ_LR595898.1\|WP_004204969.1\|1635066_1636287_-\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	6.81254e-176
NZ_LR595898.1\|WP_011854063.1\|1648461_1648911_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.38481e-31
NZ_LR595898.1\|WP_050784990.1\|1662079_1662919_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	9.83892e-64
NZ_LR595898.1\|WP_004192588.1\|1647071_1648220_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341483	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains proteins similar to iron-containing alcohol dehydrogenase (Fe-ADH), most of which have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.	2.93556e-179
NZ_LR595898.1\|WP_004536490.1\|1643124_1644681_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.22115e-108
NZ_LR595898.1\|WP_004192697.1\|1659498_1660644_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	5.27801e-72
NZ_LR595898.1\|WP_004193469.1\|1658685_1659486_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.42315e-105
NZ_LR595898.1\|WP_004534885.1\|1656671_1658672_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0

>NZ_LR595898.1|WP_004534679.1|1648915_1649851_+|branched-chain-amino-acid-ABC-transporter-permease
MQSVVLDLLNGLSYGLLLFMLCAGLTLIFGMLGVLNFAHASFYMLGAYAGYAIAARTSFWVALVAAPLAVGALGALCERTLLRRVRASGHLDELLLTFGLAYLIAEGVKLVWGLAPLAAPVPAALDGAAFTIYGAVFSRYRAFMMLVSIAMLGALWAVLRASRTGLVVRAALTRRAAVEALGHDVPRVMTLVFAAGTALAALAGVIGAPLAVIEPAMAQTLGSVVFAVIVIGGLGSLAGALVASLVLGCAQTFAAASRASLSDAAQWAGIALPDAWRALTLAQFAPLIPYLLLIVVLACRARGLFGERADV
>NZ_LR595898.1|WP_011854063.1|1648461_1648911_+|acyl-CoA-thioesterase
MSPTKPVPLPRSAYRHFLPITTRWMDNDVYGHVNNVVYYSYFDTVVNEYLIRRGALDVERGATIGLVVETQCNYFAPLVFPQRVEAGLRVARLGSSSVRYEIGLFAHGEASAAAQGHFVHVYVDRATRRPVPLPEPLRAALAPLVAPAA
>NZ_LR595898.1|WP_004192588.1|1647071_1648220_+|iron-containing-alcohol-dehydrogenase
MAYIYYLTHIHLGDDALAMLGAECARSGIARPLVVTDKGVAAAGLVDRALEALGLGALPVFDDTPSNPTEAAVLAAAQRYRDEGCDGLVAVGGGSAIDLAKGVAIAATHPAPLTRYATIEGGSERITAAAAPLIAVPTTSGTGSEVARGAILILADGRKLGFHSWHLLPKAAICDPSLTLGLPPGLTAATGMDAIAHCIETFLAPAFNPPADGIALDGLERAWAHIERATHDGGDRAARLAMMSASMQGAMAFQKGLGCVHSLSHPLGGVKVDGKTSLHHGTLNAVVLPAVLRFNESAPSVVAERRYARMRRVMNLPERADLSQALHDMTARLGLPTGLRQMGVDEQAFDHVIEGALADHCHKTNPRIASADDYRRMLVESL
>NZ_LR595898.1|WP_004193399.1|1646519_1646855_-|YbjQ-family-protein
MADPQLITTAFDIPGYRIERSLGVARGIVVRSRSIVGTFGASIQTLFGGNISLYTSLCERARQDAYERMIDEARRMGGNAIVGMRYDATEIASGVTEVLCYGTAVQAVRAG
>NZ_LR595898.1|WP_004193543.1|1645868_1646420_+|NUDIX-domain-containing-protein
MTTADYRFCPRCARALAERADPVDEGGRLRRACPDATCGYVHWNNPVPVVAAIVEYEGRILLARNAAWPEGMFALITGFLEHGETPEAGIAREVREETSLEAESVTLVGVYEFIRKNELIIAYHVRASGTIRLSPELLEYRLIEAPKLRPWRAGTGQAVADWMRARGLEFEFVDFPGAVANPG
>NZ_LR595898.1|WP_004526804.1|1644899_1645577_-|hypothetical-protein
MTDRRSHHDDDLLSLIDELEAESRAIDARMSHLDALVSWHDFLIFEAENLAKLQRSLADIREQSGQIPHAPHDVRRFRLGLLWMGAVAAYEGAMHELFVNTLRVESLRAKALDRLRQLIRDGASPHRDIKTADAQSVTRWFTLTTIADPLVAAKRFDTLYGIATITPDPAWCRRVLGIRNAFAHRNGIGVDIREEALHELIDRLDDLASEFHSAFLHEAGKLTET
>NZ_LR595898.1|WP_004536490.1|1643124_1644681_+|trypsin-like-peptidase-domain-containing-protein
MSHQTLGRALIHVAALGAVLVGFACLQPTPLAAGTLQSPAKAKRIAQIGAAGPVDFPTLVERYGPAVVSVSVPAQDPQMSASGLEALDPDDPFFAYFKSAATQPALSPENGPRAMAGAGSGFIVGADGIILTTAYVVGQASEATVRLIDRREFKARVLAVDDSSDVAVLQIDATKLPTVRLGDSSRVRTGEPVLTIGTPDGSANTVTTGIVSATARMLPDGGRFPFFQTDVTGNLDNSGGPVFNRAGEVIGIDVQIYGSGERNPGVTFAIPIDMAMKVRAQVLQAQRQARQQAQPPMQQAQQAQQAPPAAAQNALGVDAQDVGPGLAAAFGLPRPAGALVNAVEPGSPAAAVGLKPGDVIVQIGDRPLGRSAELAGDLAALPPGASAPITLIRNRMPMTVMLGSGAAASAPTGATASPGNAAAGRSETGGADRLGLTMHPLTDDERRSTGLPVGMVVDAVRGPAANAGIRPGDVVLELDDTLIETPDMVPALEAKAGKVVAVLIQRGSERRFVSVKAR
>NZ_LR595898.1|WP_004192193.1|1640005_1640971_-|LysR-family-transcriptional-regulator
MDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLEEQLGAPLFVRDGRRLVLTPAGETLLPYAERLLALADEARHAVTENRPHGRLRLGAMESTAASRLPALLARYHQAWPDVTLELVTGTTGKLIGLVRDFELDAALVATPAGSEALGEPFETASAFTEELVLLTPRGHPRVRTPRDVRLPTLVAFERGCAYRGCVERWYAAEGLKPERVLELGSYHAIVACVAAGAGVAVAPRSVLAVQREPDSLGVHPIDGMPPIDTMLVWRQGHFSAALAALRDALRDAAAAANATDVAAHEAAKVAPRRTRRGAARETLPA
>NZ_LR595898.1|WP_004204967.1|1636855_1639480_+|alanine--tRNA-ligase
MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQQLIKASARETGVADLANNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQEEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKATQGLEYTGAKTTFHGYEEIAFDDAKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQGVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHLMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRVMPYDDAVKGGAMALFGEKYGDEVRVLDLGFSRELCGGTHVHRTGDIGLFKIVAEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEKELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLAAVDGGKVSLIAGVTADASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPAKLPAALAGVKGWVEARL
>NZ_LR595898.1|WP_004204969.1|1635066_1636287_-|CoA-transferase
MGALSHIRVLDLSRVLAGPWCAQTLADLGADVIKVERPECGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIATPEGQRIIRELAAQCDVVLENYKVGQLAKYGLDYASLAAVKPGLVYCSVTGFGQTGPYAHRAGYDFIIQGMGGFMSITGERDGLPGGGPQKAGVAIADLATGLYSTIAILAALAHRDRTGEGQHIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHPNIVPYQTFETSDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPIVAAMTKTRTKREWLDALEALGVPCGPINDLAEVFDDEQVRARGMQVDLPHPSGASAKLVRNPIRMSATPPDARSAPPLLGEHTDAVLRDLLGYGDAAIAALRDKRVV
>NZ_LR595898.1|WP_004521714.1|1652134_1652839_+|ABC-transporter-ATP-binding-protein
MSALLELRGVRAGYGALPVLDGVDLRIAAGEAVALVGRNGSGRSTLAKAIMGMVRVEGTVRIGGVDVAGAPTFAIARHRVGYVDEHRDVFALLSVEDNLRLGLRGASGAAARAALADARERYPMLAERWRTKAGVLSGGEQQMLALARALIGAPRVLIVDEPAEGLAPLAVEQVRACLAGAKAQGVALLLIEQRMQLAPALTSRVAVMGRGRIVYDGAAKALDAGIVERWLSVG
>NZ_LR595898.1|WP_004536288.1|1652955_1653759_-|5-deoxy-glucuronate-isomerase
MSLLVKGAGDGMSIARVTPESAHWKHVGFAAYRLKAGEAIALAEAAREMCIVVLTGTVDIEAGDGTRWTALGSRDSVFDGVAPYALYLPPKLSVIVRASRDAELGVASAPAAGRYPARLIKPSQMRRSVRGSGANTRYVCDILPQTEPAEALLVVEVRTPSGHSSSYPPHKHDTDNVPVESSLEETYYHRVHPPQGFVFQRVYTDSRDLDESMAAGDHDVVLVPRGYHPVVVPYGYESYYLNVMAGPTRVWHFKNDPAHEWMLNGGR
>NZ_LR595898.1|WP_004526810.1|1653758_1654679_-|myo-inosose-2-dehydratase
MSAPDIRIGINPLSWMNDDLPSLGGETPLAVALTEGREIGYEGFELGNKFPREPQALKALLAQYDLSLVSGWYSGRLAERGVQEEIDAVGPHLELLAKNGATVMVYGEVAGTIQGSPAPLYQRPRFVDDAQWDAYAERVDAFARYTRAQGVRLGYHHHMGAYVESPADVARLMASTSDAVGLLFDAGHMTFGGGDPVAELAKHIGRVCHVHCKDVRPAVIRLARNRNWSFLDAVIAGAFTVPGDGSIDFPTIVDMLKRHGYRGWLVVEAEQDPAVAPSYAYAQKGYRTLRALVDAPLPPVGHKEAA
>NZ_LR595898.1|WP_004526811.1|1654675_1656661_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MNRRAMDDDTRRSPSVNDFIDDPAASVQRTVRLTAAQALVRYLAAQRVATGDGDAPLFGGVFAIFGHGNVAGLGEALHQYRDALPTYRAHNEQAMAHSAIAYAKAHLRRRMMAVTTSIGPGATNLVTAAALAHVNRLPVLLLPGDVFVSRAPDPVLQQIEDFHDGAISANDAFKAVSRYFDRIVHPAQLLTALPRALRVLTDAALCGPVTLALPQDVQTMAYDYPAEFFAPRAVTFHAPAPVEAELDAALAPLRASARPFIVAGGGALYSEGGAAALAAFAERHGIPVGETQAGKSALPWDHPLNAGAIGVTGSPAANALAHDADCVIAVGTRLQDFTTGSNTLFARARVIGINANAFDALKHRATIVQADARLALDALGARLEGWRADAAWTARAHARANAWRDAVAAVTHAPPRARALPYDADVIGAVQRSAPDSAARDIAVCAAGTLPAELHKLWRAAAPGGYHVEYGYSCMGYEIAGGLGAKLAKPEREVIVMVGDGSYLMMNSEIATSVMLGAKLIVVVLDNRGYGCINRLQQACGGAPFNNLFDDCVQGPLGAPRIDFAAHARALGARAEHVADIAALEAAMARARASDRTYVICIDTDPARTTPDGGWWWEVAVPEVSPRDAVRDARADYERHLAARAGAPASRSTPSTPESST
>NZ_LR595898.1|WP_004534885.1|1656671_1658672_-|5-dehydro-2-deoxygluconokinase
MTSPTLSFAQNRPLDVICVGRVAVDLYAQQIGARLEDASSFAKYLGGSSGNIAFGCARLGLKSAMLSRVGHDHMGRFVRETLAREGCDTSRLRTDTERLTALVLLGLKDRDTFPLIFHRENCADMALDEDDFDEAFIASSKALLITGTHFSTEQVMRASRRALDYARRNQVRTVLDIDYRPVLWGLTGKADGETRFIANEGVTAHLQRILPLFDVVIGTEEEFRIAGGKDALLDALAMVRAVTSAALVVKRGPLGCSIVDGDVPATLDALPVIRGVEVDVMNVLGAGDAFASGFLSQWLRGRPFADAARAANACGALVVSRHGCSPAMPTPAELAYFLAEAKRDPARMRRPDLDATLARLHRVTPARTPRDEVLGFAFDHRNQFFELARQTGASVARIDALKRLFVEAVAQTEAQLGLAGRIGVLIDDRYGQDALNDATGRGWWVGRPVELPGSLPLEFDHGRSIGTTLASWPLEHVAKCLVQYHPDEAAEPRIEQETQLRALYDAVQASGHELLLEVIPPRRADLPQAADTVYRALKRLYNLGIHPEWWKLAPLDAAQWQAIDALIAERDPYCRGVVLLGLSAGVDELVGGFGAAAASATCRGFTVGRTIFHEPSRAWLAGEIDDAELIARVRRTFETLIGAWRAARTDARARGRHAGAVPRVAA
>NZ_LR595898.1|WP_004193469.1|1658685_1659486_-|sugar-ABC-transporter-ATP-binding-protein
MSTPASHDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLFNVMDLDSSARIARAKLAEMGINVRDAHQPIGTMSGGERQCLAIARAIHFGARVLILDEPTAALGVKQSLNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTISKNEVLDMMAGGAEMQKMIAELDGATI
>NZ_LR595898.1|WP_004192697.1|1659498_1660644_-|ABC-transporter-permease
MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLGILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFILRGLTLALSIMFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRSLAHAGVGRLLDNGEPLVPGVPKVLLWWLAVTAVGAFVLAKTRYGNWILAAGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGTLLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS
>NZ_LR595898.1|WP_012730173.1|1660744_1661794_-|sugar-ABC-transporter-substrate-binding-protein
MRLCTGKAVLRACVAAIAVAAGVGGAAPAAQAAGARFALVSHAPDSDSWWNTIKNAIKQADEDFDVTTDYRNPPNGDIADMARLIEQSAARDYDGVITTIADYDVLKNSLRKVTAKKIPLVTINSGTEEQSAQLGAIMHVGQPEYVAGHAAGEKAKAAGVKRFLCVNHIATNSVSFDRCRGFADAIGADYKSSTIDSGQDPTEIQSKVSAYLRNHPNTQAILTLGPVPAAASLKAVQQMGLANKLFFATFDFSDDIAKAIQSGAIKFAIDQQPYLQGYIPVAVLAIAKQNKTTDPAKIRQILEANPKFQARLSTYGLQPSYGPKNIRSGPGFITKENLEKVIKYAGQYR
>NZ_LR595898.1|WP_050784990.1|1662079_1662919_+|MurR/RpiR-family-transcriptional-regulator
MLQRIAGAYDTLPRQLKRIASYIDEHRSSVMMDRTSDIAQRCGVHPSAVVRFAQRFGFSGFSDLQAVFKDAYTGQNPTVQSYQQRIRSLIDGEAGPMTGGAVARQFIDASRAGLDELAAGLDDDQFDAAVTMLERAENIYVVGVRRSFPVASYIVYALQHTAKRVHLVSGLGGMYREQIRSVKKGDVVIAISFAPYGKETQYCLRAARHNHAQTLVVTDSRLSPLARDASAHLLVKEGSAFAFRSLTSTICLCQALFIALAYRLELNVEEVKDIGGYDD
>NZ_LR595898.1|WP_004193713.1|1662911_1663931_+|inositol-2-dehydrogenase
MTNAAPTIDVAVFGAGRIGRIHAGNLARRPGVRLKYVVDVNRDAAAALAAQYGAQAADVDGALGDASIGASVICSSTDTHAELIVGAARAGKHVFCEKPVDLTLERARACEAAVARAGVVCMIGFQRRFDPTFEALKRRIDAGEIGTPEMLVVTSRDPGAPPVDYIKHSGGIFKDMLIHDFDIFRWILDDDADTLHATGSCLTDPAIAGAGDIDSAAVTIRTKRGRLCQINTSRRAAYGYDQRFEVLGSAGMLQAGNVRPTEVTGYSARAVSTDLPEAFFLERYRAAYAREIAHFFAAVTSGEPVRTTVADGVKALELAEAATLSWREARAVTLGERAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LR595898_1	1.2\|320955\|27\|NZ_LR595898\|CRISPRCasFinder	320955-320981	27	NZ_LR595898.1	320981-321007	0	1.0
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	974951-974972	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345702-1345723	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345711-1345732	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345720-1345741	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345729-1345750	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345738-1345759	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345747-1345768	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345756-1345777	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345765-1345786	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345774-1345795	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345783-1345804	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345792-1345813	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1345801-1345822	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	1782170-1782191	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_LR595899.1	2496189-2496210	2	0.909

1. spacer 1.2|320955|27|NZ_LR595898|CRISPRCasFinder matches to position: 320981-321007, mismatch: 0, identity: 1.0

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggctgatcgaagt	Protospacer
***************************

2. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 974951-974972, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acggcaagcacggcaagcacga	Protospacer
***.********.*********

3. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345702-1345723, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

4. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345711-1345732, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

5. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345720-1345741, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

6. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345729-1345750, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

7. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345738-1345759, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

8. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345747-1345768, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

9. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345756-1345777, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

10. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345765-1345786, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacacgcacga	Protospacer
****** ******** ******

11. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345774-1345795, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

12. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345783-1345804, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

13. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345792-1345813, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

14. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1345801-1345822, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

15. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 1782170-1782191, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacaagcaccgcaagcacga	Protospacer
*********** .*********

16. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to position: 2496189-2496210, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacgagcacgacgagcacga	Protospacer
*****.********.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	71759-71780	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013561	Rhizobium phaseoli strain N841 plasmid pRphaN841d, complete sequence	72312-72333	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	71683-71704	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	71759-71780	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	71760-71781	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	71757-71778	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013514	Rhizobium sp. N1314 plasmid pRspN1314c, complete sequence	72311-72332	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	71757-71778	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	71683-71704	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	69522-69543	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013604	Rhizobium sp. N731 plasmid pRspN731c, complete sequence	72311-72332	2	0.909
NZ_LR595898_2	2.2\|1651239\|22\|NZ_LR595898\|CRISPRCasFinder	1651239-1651260	22	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1567061-1567082	2	0.909
NZ_LR595898_1	1.2\|320955\|27\|NZ_LR595898\|CRISPRCasFinder	320955-320981	27	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	1015989-1016015	4	0.852
NZ_LR595898_1	1.2\|320955\|27\|NZ_LR595898\|CRISPRCasFinder	320955-320981	27	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	490950-490976	5	0.815
NZ_LR595898_1	1.2\|320955\|27\|NZ_LR595898\|CRISPRCasFinder	320955-320981	27	NC_009508	Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence	79837-79863	5	0.815
NZ_LR595898_1	1.1\|320903\|27\|NZ_LR595898\|CRISPRCasFinder	320903-320929	27	NC_010865	Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence	127776-127802	6	0.778
NZ_LR595898_1	1.1\|320903\|27\|NZ_LR595898\|CRISPRCasFinder	320903-320929	27	NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	157384-157410	6	0.778
NZ_LR595898_1	1.1\|320903\|27\|NZ_LR595898\|CRISPRCasFinder	320903-320929	27	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	31326-31352	7	0.741

1. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

2. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013561 (Rhizobium phaseoli strain N841 plasmid pRphaN841d, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

3. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

4. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

5. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

6. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

7. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013514 (Rhizobium sp. N1314 plasmid pRspN1314c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

8. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

9. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

10. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

11. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to NZ_CP013604 (Rhizobium sp. N731 plasmid pRspN731c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

12. spacer 2.2|1651239|22|NZ_LR595898|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
ccgccaagcacgacaagcacga	Protospacer
 ** ******************

13. spacer 1.2|320955|27|NZ_LR595898|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.852

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
gggctgatcgaaggggttgatcgaagg	Protospacer
 ************ **.*********

14. spacer 1.2|320955|27|NZ_LR595898|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 5, identity: 0.815

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggatgttcgcggg	Protospacer
**************** ** *** .*

15. spacer 1.2|320955|27|NZ_LR595898|CRISPRCasFinder matches to NC_009508 (Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence) position: , mismatch: 5, identity: 0.815

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggatgttcgcggg	Protospacer
**************** ** *** .*

16. spacer 1.1|320903|27|NZ_LR595898|CRISPRCasFinder matches to NC_010865 (Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence) position: , mismatch: 6, identity: 0.778

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gtagatgtcgaagcgatcaatcgaagc	Protospacer
  *   .********************

17. spacer 1.1|320903|27|NZ_LR595898|CRISPRCasFinder matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 6, identity: 0.778

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gtagatgtcgaagcgatcaatcgaagc	Protospacer
  *   .********************

18. spacer 1.1|320903|27|NZ_LR595898|CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 7, identity: 0.741

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gcgctgatcgaagcgatcaatcgaatc	Protospacer
  ....******************* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

102806 : 215156

113

Burkholderia_virus(41.94%)

holin,transposase,capsid,terminase,head,plate,lysis,tRNA,protease,portal,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100085585.1\|102806_103927_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.0e-48	39.1
WP_004525827.1\|104225_104915_-	hypothetical protein	NA	NA	NA	NA
WP_004525828.1\|105480_106638_+	DUF4382 domain-containing protein	NA	NA	NA	NA
WP_004533510.1\|106700_106856_+	lipoprotein	NA	NA	NA	NA
WP_004524602.1\|107200_107371_-	hypothetical protein	NA	NA	NA	NA
WP_038708926.1\|107532_108093_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_004536432.1\|108578_108926_+	hypothetical protein	NA	NA	NA	NA
WP_004197759.1\|109141_109696_+	YaeQ family protein	NA	NA	NA	NA
WP_004197761.1\|109932_110349_-	VOC family protein	NA	NA	NA	NA
WP_004523120.1\|110750_111845_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	5.0e-19	37.4
WP_151284998.1\|111841_112783_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_004535409.1\|112941_114555_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_151284999.1\|114573_116022_-	sigma-70 family RNA polymerase sigma factor	A0A2I7SAT0	Vibrio_phage	2.9e-30	33.5
WP_009917993.1\|116284_116833_-	hypothetical protein	NA	NA	NA	NA
WP_009935882.1\|117448_118018_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_009969926.1\|118120_119089_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011325037.1\|119231_120326_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004189258.1\|121476_122352_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	9.6e-74	47.3
WP_004536330.1\|122488_122953_-	hypothetical protein	NA	NA	NA	NA
WP_004535786.1\|123351_124443_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	2.0e-193	92.3
WP_004202809.1\|124486_124843_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_004535781.1\|125467_126292_-	hypothetical protein	NA	NA	NA	NA
WP_009961942.1\|126295_126469_-	hypothetical protein	NA	NA	NA	NA
WP_004200732.1\|126893_127298_+	PaaI family thioesterase	NA	NA	NA	NA
WP_004189208.1\|127335_128205_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_004525849.1\|128325_129342_-	D-2-hydroxyacid dehydrogenase family protein	NA	NA	NA	NA
WP_004189230.1\|129780_130836_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004525850.1\|131060_133670_-	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	7.7e-18	25.7
WP_004190199.1\|133880_134252_-	thioredoxin family protein	NA	NA	NA	NA
WP_009951655.1\|134311_135502_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.2e-21	39.2
WP_004525852.1\|135730_136234_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	2.1e-12	34.3
WP_004535363.1\|136265_137249_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.3e-07	38.0
WP_004525854.1\|137369_138005_+	LysE family translocator	NA	NA	NA	NA
WP_004189409.1\|138114_138972_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_004189046.1\|139605_141015_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_004188929.1\|141011_141602_+	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_004523096.1\|141603_144012_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_004534397.1\|146764_149557_-	toprim domain-containing protein	K4NXL6	Burkholderia_phage	0.0e+00	99.1
WP_004524471.1\|149568_149823_-	hypothetical protein	K4NZY7	Burkholderia_phage	4.5e-40	100.0
WP_004534413.1\|150180_150387_-	hypothetical protein	K4NZT3	Burkholderia_phage	9.3e-20	69.1
WP_004534400.1\|150555_150795_-	hypothetical protein	K4PAZ5	Burkholderia_phage	1.6e-34	97.5
WP_004534403.1\|150798_150993_-	hypothetical protein	K4NXL1	Burkholderia_phage	1.2e-24	95.3
WP_004534408.1\|151036_151234_-	hypothetical protein	K4NZY3	Burkholderia_phage	3.0e-28	96.9
WP_004551086.1\|151239_151458_-	hypothetical protein	A4JWR5	Burkholderia_virus	8.3e-35	100.0
WP_004551085.1\|151542_151791_-	ogr/Delta-like zinc finger family protein	A4JWR6	Burkholderia_virus	6.8e-41	100.0
WP_004534427.1\|151778_152075_-	hypothetical protein	E5E3P2	Burkholderia_phage	8.4e-38	86.5
WP_004534406.1\|152078_152315_-	hypothetical protein	A4JWR7	Burkholderia_virus	3.1e-35	100.0
WP_004534376.1\|152397_152829_+	helix-turn-helix domain-containing protein	A4JWR8	Burkholderia_virus	9.9e-72	100.0
WP_004534407.1\|152878_153622_+	hypothetical protein	A4JWR9	Burkholderia_virus	2.3e-100	99.6
WP_015985029.1\|153661_154561_+	hypothetical protein	A4JWS0	Burkholderia_virus	1.4e-165	100.0
WP_004534435.1\|154568_155666_-	phage late control D family protein	A4JWS1	Burkholderia_virus	2.9e-200	98.6
WP_004524457.1\|155665_156091_-\|tail	phage tail protein	K4NXK5	Burkholderia_phage	1.2e-72	100.0
WP_004534375.1\|156108_159069_-	hypothetical protein	A4JWS3	Burkholderia_virus	0.0e+00	100.0
WP_004552648.1\|159071_159185_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_015985038.1\|159193_159538_-\|tail	phage tail assembly protein	A4JWS5	Burkholderia_virus	7.9e-56	100.0
WP_004524455.1\|159595_160105_-\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	4.9e-94	100.0
WP_015985034.1\|160120_161293_-\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	1.5e-223	100.0
WP_004533037.1\|161348_162020_-\|tail	phage tail fiber assembly protein	A4JWS8	Burkholderia_virus	9.2e-117	99.6
WP_050376134.1\|162036_164400_-\|tail	phage tail protein	Q45YG3	Burkholderia_virus	0.0e+00	98.9
WP_009897027.1\|164410_164965_-\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	3.8e-100	100.0
WP_004524450.1\|164957_165863_-\|plate	baseplate assembly protein	A4JWT1	Burkholderia_virus	3.6e-164	100.0
WP_004531058.1\|165859_166222_-\|plate	bacteriophage baseplate assembly protein W	K4PAX6	Burkholderia_phage	1.7e-61	100.0
WP_009897036.1\|166218_166899_-\|plate	phage baseplate assembly protein V	A4JWT3	Burkholderia_virus	1.8e-123	100.0
WP_174905318.1\|167072_167849_+	site-specific DNA-methyltransferase	A4JWT4	Burkholderia_virus	5.2e-148	99.2
WP_004534424.1\|168014_168518_-	hypothetical protein	K4NX96	Burkholderia_phage	2.8e-94	100.0
WP_004531055.1\|168671_169139_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.2e-78	100.0
WP_004531054.1\|169135_169552_-\|tail	phage tail protein	A4JWT7	Burkholderia_virus	3.3e-72	100.0
WP_004532906.1\|169656_170097_-\|lysis	LysB family phage lysis regulatory protein	A4JWT9	Burkholderia_virus	1.8e-68	100.0
WP_009897048.1\|170093_170906_-	DUF3380 domain-containing protein	A4JWU0	Burkholderia_virus	4.5e-150	99.6
WP_004524440.1\|170902_171175_-\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_004524439.1\|171176_171521_-	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524438.1\|171535_171742_-\|tail	tail protein X	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004534234.1\|171738_171990_-	hypothetical protein	A4JWZ4	Burkholderia_virus	8.4e-39	98.8
WP_009979065.1\|171989_172469_-\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	1.3e-80	99.4
WP_043296752.1\|172568_173258_-\|terminase	terminase endonuclease subunit	A4JWP8	Burkholderia_virus	1.9e-117	99.1
WP_004531048.1\|173254_174268_-\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	7.2e-190	100.0
WP_076889769.1\|174301_175111_-\|capsid	GPO family capsid scaffolding protein	A4JWU8	Burkholderia_virus	4.2e-148	99.6
WP_100565330.1\|175254_177024_+\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	0.0e+00	98.8
WP_038738790.1\|177020_178076_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	2.6e-206	99.7
WP_004524431.1\|178182_178455_+	BrnT family toxin	K4NX81	Burkholderia_phage	1.0e-45	100.0
WP_004524430.1\|178414_178687_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.3e-48	100.0
WP_141365689.1\|180741_181107_-	STAS-like domain-containing protein	NA	NA	NA	NA
WP_141365692.1\|181103_181967_-	hypothetical protein	A4PE73	Ralstonia_virus	1.4e-80	56.9
WP_004190026.1\|182908_183643_+	7-cyano-7-deazaguanine synthase QueC	A0A1B0Z0B4	Vibrio_phage	1.6e-50	42.5
WP_004534354.1\|183736_184369_+	7-carboxy-7-deazaguanine synthase	R4TAH8	Halovirus	7.3e-07	31.5
WP_004189793.1\|184388_184841_+	6-carboxytetrahydropterin synthase QueD	A0A088FAL2	Vibrio_phage	7.6e-14	30.8
WP_004189570.1\|185265_186051_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_004523094.1\|186047_186824_+	sel1 repeat family protein	NA	NA	NA	NA
WP_004189171.1\|187192_188341_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_076927786.1\|188352_190773_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_004523092.1\|190955_191468_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004189331.1\|191464_192538_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_004189550.1\|192657_193701_-	rod shape-determining protein	NA	NA	NA	NA
WP_004189769.1\|194066_194366_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_004525859.1\|194478_195969_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_004523090.1\|195971_197444_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_004189747.1\|197570_198410_+	hypothetical protein	NA	NA	NA	NA
WP_004190029.1\|198441_199212_+	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	3.4e-30	33.8
WP_004523088.1\|199520_200585_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.3e-80	45.8
WP_004525862.1\|200794_201739_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004535313.1\|202112_203165_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_004523086.1\|203154_204468_-	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_004198304.1\|204479_205094_-	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_004198305.1\|205090_206236_-	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_004523085.1\|206588_207278_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_004534323.1\|207244_208048_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_004200214.1\|208044_208944_-	acetylglutamate kinase	NA	NA	NA	NA
WP_004534207.1\|209268_209520_+	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_004198314.1\|209537_210818_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_151285002.1\|210837_211380_+	response regulator	NA	NA	NA	NA
WP_085955194.1\|211799_213169_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.6e-75	54.0
WP_004198316.1\|213266_214610_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.7e-40	28.8
WP_004203414.1\|214619_215156_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_2

960615 : 971570

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197486.1\|960615_962730_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004530837.1\|963027_963537_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_071810810.1\|963728_963947_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|964209_964788_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|965055_966315_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189626.1\|966287_966470_-	hypothetical protein	NA	NA	NA	NA
WP_004536101.1\|966482_968093_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|968222_968426_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|968958_969273_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|969269_971570_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

DBSCAN-SWA_3

2386098 : 2394285

Ralstonia_virus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011851783.1\|2386098_2387208_+	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	7.8e-36	31.0
WP_038736185.1\|2387402_2388026_+	phospholipase D family protein	NA	NA	NA	NA
WP_043291774.1\|2388152_2388335_-	hypothetical protein	NA	NA	NA	NA
WP_162483593.1\|2388331_2388718_-	hypothetical protein	NA	NA	NA	NA
WP_004550288.1\|2389269_2389731_+	avidin	NA	NA	NA	NA
WP_004527234.1\|2389806_2390040_+	immunity 52 family protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004531416.1\|2390075_2390303_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_009937072.1\|2390556_2390952_+	hypothetical protein	NA	NA	NA	NA
WP_004527236.1\|2391232_2391658_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004527237.1\|2391654_2392161_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_038763587.1\|2392502_2393105_+	hypothetical protein	NA	NA	NA	NA
WP_004534826.1\|2393111_2393837_+	immunity 52 family protein	A4PE26	Ralstonia_virus	1.7e-31	43.5
WP_004196630.1\|2394021_2394285_-	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5

DBSCAN-SWA_4

2597275 : 2664097

uncultured_Caudovirales_phage(27.78%)

transposase,capsid,tail,terminase,head,lysis,tRNA,integrase,protease,portal,plate

attL 2636975:2636992|attR 2653144:2653161

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527342.1\|2597275_2598754_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_004193249.1\|2598797_2599769_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_004527343.1\|2599872_2600811_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_004192752.1\|2600858_2602256_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.8e-42	33.8
WP_004195907.1\|2602487_2603210_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004191635.1\|2603266_2603842_+	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	5.3e-12	39.3
WP_004193779.1\|2603922_2604414_+	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	4.2e-10	33.3
WP_004550230.1\|2604438_2605239_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_004193377.1\|2605574_2606360_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_004552788.1\|2606550_2607462_-	RNA methyltransferase	NA	NA	NA	NA
WP_004532151.1\|2607467_2607719_-	hypothetical protein	NA	NA	NA	NA
WP_004191664.1\|2607762_2608566_+	inositol monophosphatase	NA	NA	NA	NA
WP_004527347.1\|2608833_2609106_-	hypothetical protein	NA	NA	NA	NA
WP_004191077.1\|2609289_2609469_-	hypothetical protein	NA	NA	NA	NA
WP_004534731.1\|2609718_2610939_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.2e-239	99.8
WP_172644490.1\|2611418_2611649_+	hypothetical protein	NA	NA	NA	NA
WP_151285053.1\|2612067_2612904_-	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	9.6e-47	40.8
WP_076886479.1\|2612998_2613316_-	hypothetical protein	NA	NA	NA	NA
WP_004527236.1\|2614525_2614951_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004527237.1\|2614947_2615454_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_076871524.1\|2615795_2616395_+	hypothetical protein	NA	NA	NA	NA
WP_004552776.1\|2616391_2617135_+	immunity 52 family protein	A4PE26	Ralstonia_virus	8.0e-37	42.9
WP_009970814.1\|2617170_2617959_-	DNA adenine methylase	Q8W6S4	Burkholderia_virus	5.7e-150	95.8
WP_038718353.1\|2618101_2618647_-\|lysis	lysis protein	Q8W6S5	Burkholderia_virus	1.3e-84	97.2
WP_004552773.1\|2618646_2619144_-	lysozyme	A4JX20	Burkholderia_virus	2.9e-67	78.8
WP_004533694.1\|2619136_2619331_-	hypothetical protein	NA	NA	NA	NA
WP_004552772.1\|2619406_2620459_-	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.7e-78	44.2
WP_004540041.1\|2620468_2620675_-\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	4.0e-15	61.2
WP_009909076.1\|2620649_2621531_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.0e-30	37.4
WP_050881236.1\|2621539_2623954_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	6.8e-69	33.3
WP_004533642.1\|2624041_2624344_-\|tail	phage tail assembly protein	V5YST8	Pseudomonas_phage	1.5e-05	37.2
WP_009964536.1\|2624413_2624917_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.2e-41	50.0
WP_041224512.1\|2624927_2626097_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	4.8e-161	73.2
WP_038728728.1\|2626162_2626615_-\|tail	tail assembly chaperone	A4JWL9	Burkholderia_virus	1.6e-43	75.9
WP_024430525.1\|2626630_2628094_-	hypothetical protein	A4JWL8	Burkholderia_virus	3.6e-214	78.0
WP_004539949.1\|2628081_2628657_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.0e-32	47.7
WP_004533630.1\|2628649_2629543_-\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	1.9e-48	40.7
WP_004547840.1\|2629539_2629884_-	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004539700.1\|2629880_2630087_-	hypothetical protein	NA	NA	NA	NA
WP_004552763.1\|2630151_2630832_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	2.4e-19	35.1
WP_009935706.1\|2630834_2631368_-	hypothetical protein	Q9JML9	Wolbachia_phage	3.6e-23	39.5
WP_004539763.1\|2631357_2631888_-\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	9.2e-11	28.0
WP_004550216.1\|2632182_2633208_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.7e-109	59.1
WP_025991593.1\|2633242_2633587_-\|head	head decoration protein	NA	NA	NA	NA
WP_009936773.1\|2633613_2634714_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	5.1e-48	36.1
WP_009970818.1\|2634710_2636204_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	5.8e-135	51.2
WP_004533700.1\|2636200_2636407_-	hypothetical protein	NA	NA	NA	NA
WP_004552756.1\|2636417_2638403_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.1e-180	53.4
2636975:2636992	attL	NA	NA	NA	NA
WP_009970819.1\|2638365_2638935_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_009935698.1\|2639301_2639676_-	hypothetical protein	NA	NA	NA	NA
WP_151285035.1\|2640023_2640611_-	hypothetical protein	NA	NA	NA	NA
WP_050866061.1\|2640828_2643321_-	virulence protein E	A0A2D1GN57	Marinobacter_phage	4.7e-97	41.8
WP_004547868.1\|2643440_2643911_-	hypothetical protein	NA	NA	NA	NA
WP_024464805.1\|2644217_2644571_-	hypothetical protein	NA	NA	NA	NA
WP_174905323.1\|2644620_2645115_+	hypothetical protein	NA	NA	NA	NA
WP_009909040.1\|2645578_2646064_+	helix-turn-helix transcriptional regulator	A0A193GYL7	Enterobacter_phage	4.4e-12	41.2
WP_128972304.1\|2646011_2646467_+	hypothetical protein	NA	NA	NA	NA
WP_009970821.1\|2646595_2646814_+	hypothetical protein	NA	NA	NA	NA
WP_009970822.1\|2646865_2647201_+	hypothetical protein	NA	NA	NA	NA
WP_038718357.1\|2647197_2647803_+	hypothetical protein	NA	NA	NA	NA
WP_009927755.1\|2647799_2648249_+	hypothetical protein	NA	NA	NA	NA
WP_004540046.1\|2648248_2649565_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_004555250.1\|2649678_2650008_+	hypothetical protein	NA	NA	NA	NA
WP_004539932.1\|2650016_2650490_+	hypothetical protein	B5TA88	Burkholderia_phage	2.3e-05	71.4
WP_009890227.1\|2650498_2650741_+	AlpA family phage regulatory protein	C7BGF0	Burkholderia_phage	9.3e-19	59.2
WP_004539636.1\|2650691_2651993_-\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	1.8e-148	58.9
WP_004193649.1\|2654819_2656118_+	hypothetical protein	NA	NA	NA	NA
2653144:2653161	attR	NA	NA	NA	NA
WP_004524740.1\|2656097_2656643_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_004532149.1\|2656711_2657899_+	cupin domain-containing protein	NA	NA	NA	NA
WP_004193059.1\|2658625_2659402_-	MBL fold metallo-hydrolase	U5PVD0	Bacillus_phage	3.3e-09	26.6
WP_004524737.1\|2659406_2660549_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_004191516.1\|2660659_2661562_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_004533965.1\|2661606_2662224_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004191887.1\|2662220_2663423_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_004192745.1\|2663431_2664097_-\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_5

2953946 : 2962756

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009955224.1\|2953946_2954789_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	1.6e-17	27.0
WP_004188957.1\|2955131_2956055_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_009955227.1\|2956232_2957492_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004532363.1\|2957718_2958621_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_004189725.1\|2958960_2959278_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_004190173.1\|2959349_2960342_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|2960400_2961324_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004522358.1\|2961355_2962756_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5

DBSCAN-SWA_6

3315010 : 3324254

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522151.1\|3315010_3316558_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004527677.1\|3316594_3317122_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|3317118_3317802_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|3317866_3318682_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004538732.1\|3318864_3320871_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	8.2e-52	34.5
WP_004522147.1\|3320904_3322035_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_004194034.1\|3322301_3324254_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_7

3670316 : 3716409

Burkholderia_phage(28.57%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004200010.1\|3670316_3671417_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004527836.1\|3671380_3673219_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004204912.1\|3673298_3673781_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|3673838_3674342_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|3674414_3675905_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|3675921_3676440_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|3676476_3677148_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|3677521_3678136_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004521949.1\|3678244_3679591_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009979360.1\|3679709_3680372_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004527840.1\|3680473_3680839_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-52	88.4
WP_111952238.1\|3680942_3681533_-	hypothetical protein	NA	NA	NA	NA
WP_004535913.1\|3681927_3682344_-	DNA methylase	K4NZW3	Burkholderia_phage	7.1e-59	85.5
WP_004521944.1\|3682832_3683159_-\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	3.6e-50	96.2
WP_004535952.1\|3684202_3684733_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.4e-51	60.0
WP_038743760.1\|3684735_3685509_+	nuclease	A4JWV4	Burkholderia_virus	4.6e-43	43.3
WP_038709523.1\|3685514_3686633_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	6.4e-123	57.3
WP_038709525.1\|3686724_3688401_-	hypothetical protein	NA	NA	NA	NA
WP_038709528.1\|3688397_3689159_-	phospholipase	NA	NA	NA	NA
WP_004535816.1\|3689160_3691032_-	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_004536073.1\|3691034_3695033_-	helicase	NA	NA	NA	NA
WP_004536371.1\|3695029_3696655_-	hypothetical protein	NA	NA	NA	NA
WP_004536266.1\|3696651_3699783_-	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	1.6e-41	24.2
WP_004535468.1\|3699798_3704184_-	hypothetical protein	A0A1B1IUC6	uncultured_Mediterranean_phage	1.1e-48	25.1
WP_038709532.1\|3704177_3704816_-	restriction endonuclease	NA	NA	NA	NA
WP_011854122.1\|3704812_3707950_-	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	1.3e-101	29.8
WP_085962466.1\|3707976_3708387_-	very short patch repair endonuclease	V5UTF4	Oenococcus_phage	1.1e-11	42.6
WP_004535870.1\|3708458_3709508_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	8.5e-109	55.8
WP_154233053.1\|3709559_3709757_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	3.2e-17	60.7
WP_011854124.1\|3710766_3711735_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.8e-55	41.1
WP_038709538.1\|3711811_3712807_+	YqaJ viral recombinase family protein	A6XMH8	Bacillus_virus	1.5e-51	39.1
WP_004535666.1\|3712862_3713096_+	hypothetical protein	NA	NA	NA	NA
WP_011854126.1\|3713124_3714057_+	hypothetical protein	NA	NA	NA	NA
WP_038709540.1\|3714053_3715142_+	hypothetical protein	NA	NA	NA	NA
WP_009961431.1\|3715314_3716409_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LR595899

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LR595899_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR595899_1

2602383-2602475

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR595899_1

>merge|NZ_LR595899|1|2602383-2602475|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_LR595899|1|1|2602383-2602475|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR595899.1\|WP_051017854.1\|2584133_2585000_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_LR595899.1\|WP_004524980.1\|2608620_2610024_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_LR595899.1\|WP_004533337.1\|2599101_2599950_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_LR595899.1\|WP_004533317.1\|2597261_2597777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595899.1\|WP_004529183.1\|2604869_2606456_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_LR595899.1\|WP_004524995.1\|2586816_2587890_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_LR595899.1\|WP_157983184.1\|2612998_2613439_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|222790
NZ_LR595899.1\|WP_004533122.1\|2585293_2586820_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_LR595899.1\|WP_004188221.1\|2604424_2604880_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_LR595899.1\|WP_004529187.1\|2613464_2614112_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_LR595899.1\|WP_004524989.1\|2596694_2597204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595899.1\|WP_004187193.1\|2602693_2602942_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_LR595899.1\|WP_004529182.1\|2603936_2604428_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_LR595899.1\|WP_004529178.1\|2597841_2598867_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_LR595899.1\|WP_004529184.1\|2610020_2611199_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_LR595899.1\|WP_004187346.1\|2602938_2603640_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_LR595899.1\|WP_038755607.1\|2599946_2601947_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_LR595899.1\|WP_004188840.1\|2606816_2608610_+\|polyhydroxyalkanoic-acid-synthase	unknown	unknown	gnl\|CDD\|213656
NZ_LR595899.1\|WP_004555131.1\|2592410_2594246_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_LR595899.1\|WP_004530245.1\|2591136_2592261_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912

Protein	Function_ID	Function_description	E-value
NZ_LR595899.1\|WP_051017854.1\|2584133_2585000_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.71105e-12
NZ_LR595899.1\|WP_004524980.1\|2608620_2610024_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_LR595899.1\|WP_004533337.1\|2599101_2599950_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	4.46992e-34
NZ_LR595899.1\|WP_004529183.1\|2604869_2606456_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_LR595899.1\|WP_004187346.1\|2602938_2603640_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NZ_LR595899.1\|WP_157983184.1\|2612998_2613439_-\|6-phosphofructokinase	gnl\|CDD\|222790	PHA00430, PHA00430, tail fiber protein.	0.000333385
NZ_LR595899.1\|WP_004188840.1\|2606816_2608610_+\|polyhydroxyalkanoic-acid-synthase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.3979e-179
NZ_LR595899.1\|WP_004188221.1\|2604424_2604880_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_LR595899.1\|WP_004533122.1\|2585293_2586820_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	1.02875e-97
NZ_LR595899.1\|WP_004187193.1\|2602693_2602942_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_LR595899.1\|WP_004529182.1\|2603936_2604428_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	6.86601e-17
NZ_LR595899.1\|WP_004529178.1\|2597841_2598867_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_LR595899.1\|WP_004529184.1\|2610020_2611199_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_LR595899.1\|WP_004529187.1\|2613464_2614112_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	4.08279e-23
NZ_LR595899.1\|WP_038755607.1\|2599946_2601947_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_LR595899.1\|WP_004524995.1\|2586816_2587890_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.83012e-39
NZ_LR595899.1\|WP_004555131.1\|2592410_2594246_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	3.7779e-132
NZ_LR595899.1\|WP_004530245.1\|2591136_2592261_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	4.38049e-26

>NZ_LR595899.1|WP_038755607.1|2599946_2601947_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAAHRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSPEASREVSREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVNADANVDAEAEARHKR
>NZ_LR595899.1|WP_004533337.1|2599101_2599950_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEVTERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_LR595899.1|WP_004529178.1|2597841_2598867_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_LR595899.1|WP_004533317.1|2597261_2597777_-|hypothetical-protein
MRRAMRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_LR595899.1|WP_004524989.1|2596694_2597204_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_LR595899.1|WP_004555131.1|2592410_2594246_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLDAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NZ_LR595899.1|WP_004530245.1|2591136_2592261_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFVLDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_LR595899.1|WP_004524995.1|2586816_2587890_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ
>NZ_LR595899.1|WP_004533122.1|2585293_2586820_+|efflux-transporter-outer-membrane-subunit
MTMRNDARHDERHQRRRGIARRAARHAAALALCAAVSGCLSLAPDYARKPPPVPAAYPAYPGEPGAGSRTLEQFDWRAYFVDPRLQALIETALANNRDLRIAAQRVEQARAAYGIRRADQYPTIAANAAYLRFREPGGLLLPSPIIGELYSASLSEVQWEIDFWGRVRSLKAAALDTFLASDASRRAVTVSLIGQVADAYLALCAYDERLALTNETIASRRDSLRIFRRRYEEGAISKLDLTQSEILLQQAQTLGSQLQQARDVQQHALDLLVGTNAAARTPASLDDASIAPDLAPGLPSELLANRPDVVAAEYQLRAAHANIGAARAAFFPRIALTSSIGTGSTELHNLFASGTAAWNFIPNLSVPIFDAGRNIGNLKLANARRDEALAQYEKTIQTAFRDVADALAARHWLADQVRIAQETLATQAERARLAKLRYDSGAARFLEVLDAQRDLLNAQQQLVQTRRALLASRVALYAALGGRLDEPARDGAAPRPSPEPSAKQGPLS
>NZ_LR595899.1|WP_051017854.1|2584133_2585000_-|TetR/AcrR-family-transcriptional-regulator
MRNRNGDEQAATARHEAPARPPRCRLPADIRINQILDAALAEFSASGFAGARIDDIAARAGMSKGGVYTHFGSKDEIFEALLARTLMPPLPAASSAVRAARRARRAGAGPAARTSSARRAAQASTNGAGDADERPGPGEPREPGASREPGAAGSNAAAEFPDAPPPVPDSLAAIVDLLTGDLYTWATSEPVIAMLRLLIAESRRAPRAVERWRKHVEQAFATAVGRLVRQGVDAGELRDGIAARAPLLLVAPLTQACLRRALRAAPPSRREVAASRRDYARFIEALLT
>NZ_LR595899.1|WP_004187193.1|2602693_2602942_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_LR595899.1|WP_004187346.1|2602938_2603640_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_LR595899.1|WP_004529182.1|2603936_2604428_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_LR595899.1|WP_004188221.1|2604424_2604880_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_LR595899.1|WP_004529183.1|2604869_2606456_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NZ_LR595899.1|WP_004188840.1|2606816_2608610_+|polyhydroxyalkanoic-acid-synthase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_LR595899.1|WP_004524980.1|2608620_2610024_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_LR595899.1|WP_004529184.1|2610020_2611199_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_LR595899.1|WP_157983184.1|2612998_2613439_-|6-phosphofructokinase
MRVARDVRYWRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASSKQQAASSKQQAASSKQQAASSKQQAASSKQQAAVDRRRG
>NZ_LR595899.1|WP_004529187.1|2613464_2614112_-|BON-domain-containing-protein
MKSDAALKQDVEQELYWDPSLDARQIDVSVRDRIVTLRGFVPSWAQKYAAQKAAQRVAGARALVLELKVLPSEAPRDDEVLAAAIVSALAWQEALAGQEIHVDVDEGCVTLTGEVAFGYQRQAAETVVSRMRGVIGVVNRIDVRSRDAGATVRERVADALARRAQREAAHIEVDERDGIVTLTGTVDSLIERRAACGAAWSVKGVREVIDHLSVA

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Crispr_ID: NZ_LR595899_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR595899_2

3005276-3005421

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LR595899_2

>merge|NZ_LR595899|2|3005276-3005421|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>NZ_LR595899|2|1|3005276-3005421|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>NZ_LR595899|2|2|3005326-3005411|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR595899.1\|WP_004537583.1\|3005996_3007268_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_LR595899.1\|WP_004200705.1\|3015944_3016598_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_LR595899.1\|WP_004536718.1\|3012755_3014588_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_LR595899.1\|WP_004529498.1\|3016665_3017100_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_LR595899.1\|WP_085547081.1\|2990884_2992336_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_LR595899.1\|WP_004529485.1\|2999009_2999600_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595899.1\|WP_004530666.1\|3011727_3012759_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|236122
NZ_LR595899.1\|WP_004536571.1\|3007483_3009325_+\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|180772
NZ_LR595899.1\|WP_004536976.1\|3009399_3011211_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_LR595899.1\|WP_004529477.1\|2989479_2990880_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235660
NZ_LR595899.1\|WP_004200700.1\|2996645_2997761_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_LR595899.1\|WP_004188244.1\|3017485_3018616_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_LR595899.1\|WP_004196898.1\|2995870_2996311_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_LR595899.1\|WP_004532550.1\|3001841_3004115_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_LR595899.1\|WP_004532583.1\|2987669_2988827_-\|autoinducer-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377050
NZ_LR595899.1\|WP_004205322.1\|2998058_2998994_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_LR595899.1\|WP_011857741.1\|3014714_3015056_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR595899.1\|WP_004187137.1\|3015052_3015502_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_LR595899.1\|WP_004536946.1\|2999659_3001558_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_LR595899.1\|WP_004187469.1\|3004247_3004643_-\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|224648

Protein	Function_ID	Function_description	E-value
NZ_LR595899.1\|WP_004537583.1\|3005996_3007268_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	1.96228e-113
NZ_LR595899.1\|WP_004536718.1\|3012755_3014588_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.43822e-107
NZ_LR595899.1\|WP_004529498.1\|3016665_3017100_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_LR595899.1\|WP_085547081.1\|2990884_2992336_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.75157e-132
NZ_LR595899.1\|WP_004200705.1\|3015944_3016598_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	6.31252e-20
NZ_LR595899.1\|WP_004530666.1\|3011727_3012759_+\|nitroreductase-family-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	7.9992e-31
NZ_LR595899.1\|WP_004536571.1\|3007483_3009325_+\|ribonucleotide-reductase	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_LR595899.1\|WP_004536976.1\|3009399_3011211_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	2.74988e-74
NZ_LR595899.1\|WP_004529477.1\|2989479_2990880_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235660	PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.	0
NZ_LR595899.1\|WP_004200700.1\|2996645_2997761_-\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NZ_LR595899.1\|WP_004188244.1\|3017485_3018616_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	2.53339e-55
NZ_LR595899.1\|WP_004196898.1\|2995870_2996311_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	3.1145e-25
NZ_LR595899.1\|WP_004532550.1\|3001841_3004115_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	7.68683e-57
NZ_LR595899.1\|WP_004532583.1\|2987669_2988827_-\|autoinducer-binding-domain-containing-protein	gnl\|CDD\|377050	pfam03472, Autoind_bind, Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.	3.82627e-05
NZ_LR595899.1\|WP_004205322.1\|2998058_2998994_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NZ_LR595899.1\|WP_004187137.1\|3015052_3015502_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50
NZ_LR595899.1\|WP_004536946.1\|2999659_3001558_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	4.48837e-35
NZ_LR595899.1\|WP_004187469.1\|3004247_3004643_-\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14

>NZ_LR595899.1|WP_004187469.1|3004247_3004643_-|TraR/DksA-C4-type-zinc-finger-protein
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_LR595899.1|WP_004532550.1|3001841_3004115_-|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_LR595899.1|WP_004536946.1|2999659_3001558_+|GMC-family-oxidoreductase
MLGATRSTLWGSRERPRIAAARAPGAVASRMREEARECAGPRGAGRAPHRATAAGGKTGRRTVRAPSRARAGSNNQKVNRMKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_LR595899.1|WP_004529485.1|2999009_2999600_+|hypothetical-protein
MCRARGIGRQARGNATAPSPIAAAAIGARPRSAPRGPRISDAGRLAAARSAFAIHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQAPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_LR595899.1|WP_004205322.1|2998058_2998994_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NZ_LR595899.1|WP_004200700.1|2996645_2997761_-|SRPBCC-family-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_LR595899.1|WP_004196898.1|2995870_2996311_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_LR595899.1|WP_085547081.1|2990884_2992336_-|2-oxo-acid-dehydrogenase-subunit-E2
MGVHVIKMPDIGEGIAEVELGLWHVKVGDRVKEDQAIADVMTDKASVEIPSPVTGVVVALGGKEGDVLAVGSELVRLEVEGDGNHKAEPDGGARAAAAQPERVADTAHAHASAAAKSARGEHGAGHGRDDARAASSGTSSGASHTQHAEREARGHRESSEYREDRSVSRGASQTDVERGPASPPPARRPGERPLASPAVRKRAWDLGVELRYVHGTGEAGRILHEDLDAYLQGRGAAAQRARGGQAAYVERHDEEAVPVIGLRRKIAQRMQDAKRRIPHFSYVEEIDVTELEALRAELNRKYGDTRGRLTVLPLLARAMVIALREFPQINARYDDEAGVVTRHGAVHLGIATQSKAGLMVPVVRHAEARDPWSIAAEVARLADAARAGRAERDELSGSTITITSLGALGGIASTPVINSPEVGIVGVNRIVERPMFRGGAVVARKLMNLSSSFDHRVIDGMDAAEFIQAVRALLEQPALLFVE
>NZ_LR595899.1|WP_004529477.1|2989479_2990880_-|dihydrolipoyl-dehydrogenase
MSDTKTTTLLVIGGGPGGYVAAIRAGQLGVRTILVERDRLGGTCLNIGCIPSKALIHAAGEFDKVRGFAGDSPLGIRTQAPAIDIARTVAWKDGIVKKLTGGVGALLKKNGVEVVHGDARVVDGKTVDVDTGGGARVRIQCEHLLLAAGSEPVELPAMPFGGNVISSTGALSPGRLPKRLVVVGAGYIGLELGIAYRKLGVEVSVVEARERILPIYDAELTKPVAASLKRLGVRVLLGHKVLGLNARGDAVCVQDDAHAQTELAADQVLVTVGRRPRTQGWGLETLQLDRAGAALKIDDMCRTSMRNVWAIGDLTGEPMLAHRAMAQGEMVAEIVAGKKRHFMPAAIAAICFTDPEVVSAGLAPDEAERTFGACVSASFPFAANGRALTLESADGFVRVVARRDDHLIVGWQAVGAGVSELAAAFSQSLEMGARLEDVGGTIHAHPTLGEAVMEAALRALGHALHI
>NZ_LR595899.1|WP_004532583.1|2987669_2988827_-|autoinducer-binding-domain-containing-protein
MARQSTTVPFELSSAELARTRVGIVDGKRISLGVQGDALRGFVLERRCKSPGEPVSTQRVGLRDPAAVAAFVEHDPYVVQLGIDYRALLDVHRAADDAGSHGAFAVHDARYARPASEAGGAFRPAEHAGAAPAASGVPTASAASVAQPEFAVECEHDGALLALMRRICASCGATQCFYHWFVVDEDTGEFTAHDLLIGGAPAWAQRYVHQHWYLNDPAVAHARDNTQPLRGSALAELRSDHWLNRYAQTQGLGSNVFFPAHRRDVSTFGLLHVAAPLPAPHGEDALWRNRRVLRGLANEMLEWRVVRRRRELAQELSLAAQDVLALRLVARGGGARHVAEELRLDERAVYQLFTAINRKMDSKHIKSSATKAKRLGLLAEGYISK
>NZ_LR595899.1|WP_004537583.1|3005996_3007268_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGARWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NZ_LR595899.1|WP_004536571.1|3007483_3009325_+|ribonucleotide-reductase
MRTINKRTRTIAHADSFVRMIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHMAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_LR595899.1|WP_004536976.1|3009399_3011211_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLARALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_LR595899.1|WP_004530666.1|3011727_3012759_+|nitroreductase-family-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGLAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_LR595899.1|WP_004536718.1|3012755_3014588_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_LR595899.1|WP_011857741.1|3014714_3015056_-|hypothetical-protein
MTDAVVSSRLVSSRLAPCCVYIDIQGEGDVDVDAEGNGNGNIDVIDSKRCEPSGVEPVERAVRRPRYRAQSGCLSGIHRNGIVMPALMPPTNRFDRLRASAVIVDRTKPRRSP
>NZ_LR595899.1|WP_004187137.1|3015052_3015502_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_LR595899.1|WP_004200705.1|3015944_3016598_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_LR595899.1|WP_004529498.1|3016665_3017100_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_LR595899.1|WP_004188244.1|3017485_3018616_-|porin
MMNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

527303 : 535644

Burkholderia_virus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064743084.1\|527303_529061_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.6e-19	36.0
WP_139341958.1\|529170_529665_+	hypothetical protein	NA	NA	NA	NA
WP_076805049.1\|529729_530854_-	beta family protein	NA	NA	NA	NA
WP_025988353.1\|530850_532104_-	ImmA/IrrE family metallo-endopeptidase	A0A222YXG1	Escherichia_phage	1.7e-18	43.2
WP_009961460.1\|532106_532391_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.0e-16	44.0
WP_009961458.1\|533294_533537_-	hypothetical protein	Q6JIH9	Burkholderia_virus	2.1e-34	98.6
WP_004549802.1\|533584_533743_-	hypothetical protein	NA	NA	NA	NA
WP_004545584.1\|533739_533982_-	hypothetical protein	NA	NA	NA	NA
WP_009923452.1\|534119_534251_-	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_025988352.1\|534260_534536_-	hypothetical protein	Q6JIH4	Burkholderia_virus	6.1e-43	98.9
WP_004549731.1\|535106_535376_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|535359_535644_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0

DBSCAN-SWA_2

688362 : 760121

Vibrio_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024431716.1\|688362_689130_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004206084.1\|689168_690170_-	HpnL family protein	NA	NA	NA	NA
WP_004525542.1\|690166_690940_-	hypothetical protein	NA	NA	NA	NA
WP_009933059.1\|690936_691626_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_004188420.1\|691990_693505_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_038714279.1\|695215_696154_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_004202234.1\|696187_696736_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190846.1\|696738_698244_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|698387_698915_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004190879.1\|698994_699426_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|699439_701302_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|701298_702288_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004530040.1\|702290_705161_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_050868720.1\|705151_707443_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004190563.1\|707608_709897_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004537649.1\|709900_712117_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004525550.1\|712116_713187_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004530790.1\|713189_713906_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|713948_714338_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004530042.1\|714343_714937_+	type VI secretion lipoprotein TssJ	NA	NA	NA	NA
WP_004525552.1\|714933_716295_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004525553.1\|716377_718036_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004525554.1\|718032_721536_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|721594_721954_+	hypothetical protein	NA	NA	NA	NA
WP_004190471.1\|721976_722402_+	hypothetical protein	NA	NA	NA	NA
WP_004536812.1\|722722_722998_+	hypothetical protein	NA	NA	NA	NA
WP_004528661.1\|723548_724448_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_011857649.1\|724489_724792_-	hypothetical protein	NA	NA	NA	NA
WP_004524287.1\|724681_726001_+	glycosyltransferase	NA	NA	NA	NA
WP_004528658.1\|725997_727584_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_004535065.1\|727860_728856_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_004536569.1\|728981_729164_+	hypothetical protein	NA	NA	NA	NA
WP_004532078.1\|729160_730744_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004536832.1\|733257_734922_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	7.0e-57	31.6
WP_004537403.1\|735054_736539_-	glycoside hydrolase family 68 protein	NA	NA	NA	NA
WP_004523134.1\|736808_737825_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004523135.1\|738270_739470_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|739647_740673_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009933096.1\|740842_741094_+	hypothetical protein	NA	NA	NA	NA
WP_004530801.1\|741105_742380_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_004535113.1\|742452_743424_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|743574_744108_+	4-vinyl reductase	NA	NA	NA	NA
WP_004186960.1\|744168_746232_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004536637.1\|746234_748160_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_151285070.1\|748164_749337_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|749333_750119_+	drug:proton antiporter	NA	NA	NA	NA
WP_004523139.1\|750143_751412_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530056.1\|751432_752578_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004523141.1\|752687_753551_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004530057.1\|753731_755387_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|755473_756349_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_011857652.1\|756492_757371_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004537371.1\|757533_759087_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004530058.1\|759083_760121_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_3

2714810 : 2787986

Ralstonia_phage(20.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009961431.1\|2714810_2715905_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_004524887.1\|2716065_2717238_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_004529276.1\|2717566_2718427_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.1e-13	28.0
WP_004533338.1\|2718428_2720045_+	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_004524883.1\|2720057_2721209_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_004536914.1\|2721215_2722058_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_004537121.1\|2722054_2724061_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004533395.1\|2724095_2724980_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_004556345.1\|2725342_2727004_+	AMP-binding protein	A0A1V0SBX8	Catovirus	3.5e-32	25.2
WP_004548868.1\|2727983_2729018_+	acyl-CoA desaturase	NA	NA	NA	NA
WP_009927010.1\|2729043_2729328_+	acyl carrier protein	NA	NA	NA	NA
WP_004529286.1\|2730271_2731312_+	acyl-CoA desaturase	NA	NA	NA	NA
WP_004529287.1\|2731352_2732378_+	amidohydrolase	NA	NA	NA	NA
WP_004540539.1\|2734240_2734660_+	PaaI family thioesterase	NA	NA	NA	NA
WP_004536963.1\|2734666_2735638_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_038719029.1\|2735735_2736095_+	hypothetical protein	NA	NA	NA	NA
WP_004540486.1\|2736108_2736705_+	GDP-mannose pyrophosphatase NudK	NA	NA	NA	NA
WP_004539275.1\|2736941_2737670_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.2e-21	31.2
WP_151285101.1\|2738492_2740253_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_004536495.1\|2740695_2750121_-	hemagglutinin repeat-containing protein	NA	NA	NA	NA
WP_071811406.1\|2750272_2750470_-	hypothetical protein	NA	NA	NA	NA
WP_004533385.1\|2750470_2750734_-	putative Immunity protein 75	NA	NA	NA	NA
WP_004536961.1\|2751325_2755984_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_009960530.1\|2755970_2757239_-	hypothetical protein	NA	NA	NA	NA
WP_004533410.1\|2757254_2759459_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.9e-42	27.7
WP_009935223.1\|2759875_2760322_-	hypothetical protein	NA	NA	NA	NA
WP_004524834.1\|2761433_2761781_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_004533334.1\|2761777_2762185_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	4.6e-10	34.9
WP_014920210.1\|2762617_2764651_-	hypothetical protein	NA	NA	NA	NA
WP_004555376.1\|2764891_2767063_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|2767067_2767919_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004524828.1\|2767919_2768843_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004536997.1\|2768905_2770147_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004524825.1\|2770182_2771427_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_004557920.1\|2771469_2772108_-	hypothetical protein	NA	NA	NA	NA
WP_004536893.1\|2773880_2775035_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004536862.1\|2775342_2775600_+\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	2.4e-09	60.4
WP_004524822.1\|2776376_2777117_+	hypothetical protein	NA	NA	NA	NA
WP_011857730.1\|2777848_2779108_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_011857733.1\|2779067_2779778_-	hypothetical protein	NA	NA	NA	NA
WP_004203275.1\|2779793_2781998_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004537556.1\|2784672_2786118_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004524812.1\|2786114_2787986_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR595898

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LR595899

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection