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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LR632930 Chitinophaga pinensis isolate 3 chromosome 1 5 crisprs csa3,WYL,PD-DExK,DEDDh,cas3 3 1 3 0

Results visualization

1. NZ_LR632930
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR632930_1 256439-256540 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR632930_2 1570930-1571025 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR632930_3 3721003-3721097 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR632930_4 4113276-4113442 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR632930_5 5178795-5178928 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LR632930_1 1.1|256462|56|NZ_LR632930|CRISPRCasFinder 256462-256517 56 NZ_LR632930.1 256030-256085 0 1.0
NZ_LR632930_1 1.1|256462|56|NZ_LR632930|CRISPRCasFinder 256462-256517 56 NZ_LR632930.1 256174-256229 0 1.0
NZ_LR632930_1 1.1|256462|56|NZ_LR632930|CRISPRCasFinder 256462-256517 56 NZ_LR632930.1 256318-256373 0 1.0
NZ_LR632930_5 5.1|5178819|31|NZ_LR632930|CRISPRCasFinder 5178819-5178849 31 NZ_LR632930.1 5899871-5899901 0 1.0
NZ_LR632930_5 5.1|5178819|31|NZ_LR632930|CRISPRCasFinder 5178819-5178849 31 NZ_LR632930.1 2776276-2776306 1 0.968
NZ_LR632930_5 5.2|5178874|31|NZ_LR632930|CRISPRCasFinder 5178874-5178904 31 NZ_LR632930.1 728658-728688 1 0.968

1. spacer 1.1|256462|56|NZ_LR632930|CRISPRCasFinder matches to position: 256030-256085, mismatch: 0, identity: 1.0

cctatcatccgcacgattaaagggaatactgtaaaaggtgttccctttttgttttt	CRISPR spacer
cctatcatccgcacgattaaagggaatactgtaaaaggtgttccctttttgttttt	Protospacer
********************************************************

2. spacer 1.1|256462|56|NZ_LR632930|CRISPRCasFinder matches to position: 256174-256229, mismatch: 0, identity: 1.0

cctatcatccgcacgattaaagggaatactgtaaaaggtgttccctttttgttttt	CRISPR spacer
cctatcatccgcacgattaaagggaatactgtaaaaggtgttccctttttgttttt	Protospacer
********************************************************

3. spacer 1.1|256462|56|NZ_LR632930|CRISPRCasFinder matches to position: 256318-256373, mismatch: 0, identity: 1.0

cctatcatccgcacgattaaagggaatactgtaaaaggtgttccctttttgttttt	CRISPR spacer
cctatcatccgcacgattaaagggaatactgtaaaaggtgttccctttttgttttt	Protospacer
********************************************************

4. spacer 5.1|5178819|31|NZ_LR632930|CRISPRCasFinder matches to position: 5899871-5899901, mismatch: 0, identity: 1.0

attgcgctgtaattgcgctgtaatcgtacgc	CRISPR spacer
attgcgctgtaattgcgctgtaatcgtacgc	Protospacer
*******************************

5. spacer 5.1|5178819|31|NZ_LR632930|CRISPRCasFinder matches to position: 2776276-2776306, mismatch: 1, identity: 0.968

attgcgctgtaattgcgctgtaatcgtacgc	CRISPR spacer
attgcgctgtaatcgcgctgtaatcgtacgc	Protospacer
*************.*****************

6. spacer 5.2|5178874|31|NZ_LR632930|CRISPRCasFinder matches to position: 728658-728688, mismatch: 1, identity: 0.968

atagtacgctagccatactgtaaacttacgc	CRISPR spacer
atagtacgctagccatactgtaatcttacgc	Protospacer
*********************** *******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LR632930_4 4.1|4113311|31|NZ_LR632930|PILER-CR 4113311-4113341 31 CP011998 Ralstonia solanacearum strain YC45 plasmid, complete sequence 1226411-1226441 7 0.774

1. spacer 4.1|4113311|31|NZ_LR632930|PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 7, identity: 0.774

atttggggaatggatacccgttttcatgggc	CRISPR spacer
aagtcgggtatggatacccgtttgcatgtac	Protospacer
*  * *** ************** **** .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1071638 : 1081843 9 Feldmannia_species_virus(16.67%) NA NA
DBSCAN-SWA_2 6079820 : 6085253 6 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_3 6130160 : 6169794 31 Bacillus_phage(33.33%) tRNA,tail,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage