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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LR655210 Bifidobacterium longum subsp. infantis isolate B.longum_ssp_infantis_6 chromosome USA001_1 5 crisprs c2c9_V-U4,cas14j,DEDDh,WYL 0 1 6 0

Results visualization

1. NZ_LR655210
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR655210_1 533845-533927 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR655210_2 650765-650850 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR655210_3 1667958-1668300 Unclear NA
4 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR655210_4 1831831-1831917 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR655210_5 2156849-2157004 Orphan NA
2 spacers
WYL

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 MN508623 UNVERIFIED: Enterobacter phage EC-F1, complete genome 160308-160338 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 MN508624 UNVERIFIED: Enterobacter phage EC-F2, complete genome 160430-160460 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 MH823906 Citrobacter phage Maroon, complete genome 148776-148806 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 KX431560 Cronobacter phage vB_CsaM_leN, complete genome 149283-149313 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 NC_048646 Cronobacter phage vB_CsaM_leE, complete genome 151524-151554 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 MN508621 UNVERIFIED: Enterobacter phage EC-W1, complete genome 164241-164271 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 MT341500 Enterobacter phage EBPL, complete genome 151306-151336 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 JN882287 Cronobacter phage vB_CsaM_GAP161, complete genome 148522-148552 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 MN508622 UNVERIFIED: Enterobacter phage EC-W2, complete genome 140479-140509 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 KT381880 Citrobacter phage Margaery, complete genome 148362-148392 5 0.839
NZ_LR655210_3 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder 1667989-1668019 31 NC_048645 Cronobacter phage vB_CsaM_leB, complete genome 147555-147585 5 0.839

1. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to MN508623 (UNVERIFIED: Enterobacter phage EC-F1, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

2. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to MN508624 (UNVERIFIED: Enterobacter phage EC-F2, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

3. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

4. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to KX431560 (Cronobacter phage vB_CsaM_leN, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

5. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to NC_048646 (Cronobacter phage vB_CsaM_leE, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

6. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to MN508621 (UNVERIFIED: Enterobacter phage EC-W1, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

7. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to MT341500 (Enterobacter phage EBPL, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

8. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to JN882287 (Cronobacter phage vB_CsaM_GAP161, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

9. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to MN508622 (UNVERIFIED: Enterobacter phage EC-W2, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

10. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

11. spacer 3.1|1667989|31|NZ_LR655210|CRISPRCasFinder matches to NC_048645 (Cronobacter phage vB_CsaM_leB, complete genome) position: , mismatch: 5, identity: 0.839

cggatatttcagtacatacacgg-actgtttc	CRISPR spacer
cggatatttcaggacatactcggaaatgtct-	Protospacer
************ ****** *** * ***.* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 278896 : 288673 7 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_2 1103358 : 1115232 15 Lactococcus_phage(25.0%) portal,terminase,capsid NA
DBSCAN-SWA_3 1218862 : 1283440 58 Lactococcus_phage(17.65%) integrase,protease,holin,transposase attL 1223492:1223510|attR 1287831:1287849
DBSCAN-SWA_4 1562129 : 1597586 47 Mycobacterium_phage(25.0%) integrase,transposase attL 1565232:1565249|attR 1603634:1603651
DBSCAN-SWA_5 1780026 : 1792823 15 Bifidobacterium_phage(63.64%) tail,portal,capsid NA
DBSCAN-SWA_6 1866323 : 1921199 47 Staphylococcus_phage(44.44%) integrase,tRNA,transposase attL 1864488:1864504|attR 1925158:1925174
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage