CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR698961	Helicobacter cinaedi isolate MGYG-HGUT-01432 chromosome 1	3 crisprs	cas3,cas2,cas1,cas9,cas4,csx20,csx23,cas10,csm3gr7,csx19	9	19	0	0

1. NZ_LR698961

CRISPR-Cas detection and classification

Crispr_ID: NZ_LR698961_1

• CRISPR_ID: NZ_LR698961_1
• CRISPR_location: 148945-149068
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_LR698961_1

Consensus_repeat	Method
ATTCTTATGGAGAGTTTG	PILER-CR

spacers of NZ_LR698961_1

>1.1|148963|32|NZ_LR698961|PILER-CR
GCCATTGATTGATTCTTTGGCTCAAATTCCCC
>1.2|149013|38|NZ_LR698961|PILER-CR
CTACTATTAATTATTTTTGATAGATACAAACTCCCATA

CRISPR arrays and Neighbor proteins around NZ_LR698961_1

CRISPR arrays

The CRISPR arrays of NZ_LR698961_1

>merge|NZ_LR698961|1|148945-149068|PILER-CR
ATTCTTATGGAGAGTTTAGCCATTGATTGATTCTTTGGCTCAAATTCCCCATTCTTATGGAGAGTTTGCTACTATTAATTATTTTTGATAGATACAAACTCCCATAATTTTTATGGAGAGTTTG

>NZ_LR698961|1|1|148945-149068|PILER-CR
ATTCTTATGGAGAGTTTA	GCCATTGATTGATTCTTTGGCTCAAATTCCCC
ATTCTTATGGAGAGTTTG	CTACTATTAATTATTTTTGATAGATACAAACTCCCATA
ATTTTTATGGAGAGTTTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR698961.1|WP_002957381.1|162500_162944_+|DUF2603-domain-containing-protein	unknown	unknown	gnl|CDD|337854
NZ_LR698961.1|WP_002956210.1|144615_144867_+|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl|CDD|224066
NZ_LR698961.1|WP_014666253.1|160038_160749_+|LPP20-family-lipoprotein	unknown	unknown	gnl|CDD|225563
NZ_LR698961.1|WP_002956203.1|140915_141455_-|ion-transporter	unknown	unknown	gnl|CDD|366146
NZ_LR698961.1|WP_002956204.1|141589_141904_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002956213.1|147404_148319_+|lauroyl-acyltransferase	unknown	unknown	gnl|CDD|181420
NZ_LR698961.1|WP_002957385.1|158858_159950_+|glycosyltransferase	unknown	unknown	gnl|CDD|182223
NZ_LR698961.1|WP_002956212.1|146340_147408_+|lipopolysaccharide-heptosyltransferase-I	unknown	unknown	gnl|CDD|274025
NZ_LR698961.1|WP_015453213.1|143761_144556_+|indole-3-glycerol-phosphate-synthase	unknown	unknown	gnl|CDD|238203
NZ_LR698961.1|WP_002956208.1|143276_143633_-|TM2-domain-containing-protein	unknown	unknown	gnl|CDD|377473
NZ_LR698961.1|WP_002956211.1|144866_146339_+|Ppx/GppA-family-phosphatase	unknown	unknown	gnl|CDD|223326
NZ_LR698961.1|WP_002957382.1|161513_162500_+|ornithine-carbamoyltransferase	unknown	unknown	gnl|CDD|234835
NZ_LR698961.1|WP_015453216.1|154719_154947_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957379.1|164358_165672_+|(Fe-S)-binding-protein	unknown	unknown	gnl|CDD|223325
NZ_LR698961.1|WP_002957380.1|162976_164350_+|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl|CDD|236430
NZ_LR698961.1|WP_002957383.1|160766_161384_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_014666247.1|142307_142556_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002956205.1|141947_142295_-|TM2-domain-containing-protein	unknown	unknown	gnl|CDD|377473
NZ_LR698961.1|WP_015453217.1|157421_158855_+|glycosyltransferase	unknown	unknown	gnl|CDD|340847
NZ_LR698961.1|WP_002957387.1|156028_157447_+|O-antigen-ligase-family-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR698961.1|WP_002957381.1|162500_162944_+|DUF2603-domain-containing-protein	gnl|CDD|337854	pfam10788, DUF2603, Protein of unknown function (DUF2603). This family is conserved in Epsilon-proteobacteria. The function is not known.	1.22436e-35
NZ_LR698961.1|WP_002956210.1|144615_144867_+|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl|CDD|224066	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion].	4.29894e-06
NZ_LR698961.1|WP_014666253.1|160038_160749_+|LPP20-family-lipoprotein	gnl|CDD|225563	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown].	2.65813e-38
NZ_LR698961.1|WP_002956203.1|140915_141455_-|ion-transporter	gnl|CDD|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	2.44594e-16
NZ_LR698961.1|WP_002956213.1|147404_148319_+|lauroyl-acyltransferase	gnl|CDD|181420	PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase; Reviewed.	5.86873e-135
NZ_LR698961.1|WP_002957385.1|158858_159950_+|glycosyltransferase	gnl|CDD|182223	PRK10073, PRK10073, putative glycosyl transferase; Provisional.	4.3159e-39
NZ_LR698961.1|WP_002956212.1|146340_147408_+|lipopolysaccharide-heptosyltransferase-I	gnl|CDD|274025	TIGR02193, LIPOPOLYSACCHARIDE_HEPTOSYLTRANSFERASE-1, lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.59021e-90
NZ_LR698961.1|WP_015453213.1|143761_144556_+|indole-3-glycerol-phosphate-synthase	gnl|CDD|238203	cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.	4.65479e-17
NZ_LR698961.1|WP_002956208.1|143276_143633_-|TM2-domain-containing-protein	gnl|CDD|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	5.03744e-07
NZ_LR698961.1|WP_002956211.1|144866_146339_+|Ppx/GppA-family-phosphatase	gnl|CDD|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	3.3773e-118
NZ_LR698961.1|WP_002957382.1|161513_162500_+|ornithine-carbamoyltransferase	gnl|CDD|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NZ_LR698961.1|WP_002957379.1|164358_165672_+|(Fe-S)-binding-protein	gnl|CDD|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.54206e-68
NZ_LR698961.1|WP_002957380.1|162976_164350_+|oxygen-independent-coproporphyrinogen-III-oxidase	gnl|CDD|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_LR698961.1|WP_002956205.1|141947_142295_-|TM2-domain-containing-protein	gnl|CDD|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	4.03581e-14
NZ_LR698961.1|WP_015453217.1|157421_158855_+|glycosyltransferase	gnl|CDD|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	6.40503e-49

Protein sequences

>NZ_LR698961.1|WP_002956213.1|147404_148319_+|lauroyl-acyltransferase
MKFFTKILKAIVSCLGFYLSKIPHWFFVWHIVALAFIMRAVDRRRYKDARANLDFVYGEQMSEVDKKALIQTCYKNFAFVLLETIRVPFIPLDKHTKRFRFVDEEHILQTLEKDKGAVLISAHYGYWEAMASVLPPRYHWCNMASLGRLTQFSAINELIIQRREMQNVKFIDKKGAFKHLLKLYGAENALAGILVDQNISASEGVWVEFFGKKATHTTIASVLSRRFNVGIVPVMIEIKENYKSFEARFYPPIYCKKSEDSTQNILEATQAQADAIEKAIRAKPQDWFWFHKRFKSAYQEIYTH
>NZ_LR698961.1|WP_002956212.1|146340_147408_+|lipopolysaccharide-heptosyltransferase-I
MGLRVAIIRLSSLGDVIVGACVLPFVREKLQEKLGQEVEITWIVDNVFAEVLQDSPCVDRLVRIDLKKGGIGAIPKIINRLKALPYYDKVVDMQGLIKSAVCGRFLKYDEFWGFDKDSIKERAASLFYKKKVRIPYENHILERNFVLVREALGLDDVNLERVYTRRKEAFSLNNKAKEQVATIMQECGIDSKKHLVLLVLESSLESKSYPVDLFVEMTAILLSQSQIQVLLLWYSTDKAREIKACFESKDVVLLPRLSMSEIKALIQKVSVVVGGDTGITHLAWAMQKPSVTLYGNTPASRFALVGEQNVFLSGSENPRYQKNDFSIAKIAPRAIVGEIDTILQRQHSVACERDI
>NZ_LR698961.1|WP_002956211.1|144866_146339_+|Ppx/GppA-family-phosphatase
MAKITSVIDIGSNSVRMAIFRKTSRFAFHLIYEIKSKVRISEGCYESRGVLGEVPMNRAVLALKEFAQISKAHKARKVFCVATSALRDAPNSKIFVDRVKKECGLSVKVIDGKKEALYGGIACANLLHYKDGITMDIGGGSTECAFIRNGKIIDLISLDIGTIRLKELFFDKKNNIEGARRFIQEQLKSVPSHFKHNRIFGVGGTIRALSKMIMKYKKYPIAELHGYEVDVAQNLKFFEKISQASEDKLESMGVPQDRIDNIRSGCLILQMFLAHFGAKQIVTSGVGVREGVYLSDLLRGHKNTFPKAFNPSISAIEDRFMLDKTYAEMTRRESLKIFDALFPLHKLDEQCKKLLNIASYLSSVGRILNFYNAELHGSYMLLNALEYGFSHTERLSICLLVEYSGKKIPQDGSIEHISDFMPKLLSLQWLSFMLALAETLCRSEGNLQIRYEYVKSKILRIYTSADLYLARENIAKLHKPEPLQIEFIKV
>NZ_LR698961.1|WP_002956210.1|144615_144867_+|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALMINNECIACDACAEECPNGAIEEGDPIYSIDPDVCTECVGSYDEPSCLSVCPVDAIVPDPDNMETMEELRYKFETLQKGE
>NZ_LR698961.1|WP_015453213.1|143761_144556_+|indole-3-glycerol-phosphate-synthase
MKSIESNFLQSSVIFTEKCKRNLQAHLAKRKSVIDFETLGRTLAYSPFLPRFEREFFARARANPPKNAMRFEIQGDFDEVGFLEMASGAEQNGVRNGKHKSGGDMFLLDLRMQYMPCVSGDCVDSKVDSSTLGMVLESISLLRRHSTLPIIHADLFVDSYQILESALFGADSLLIPCGLHSAKTLSELLQFARRLNLEPFVEVCDKDELKRAIFSGASMLFIHKDSFEALLSLVPNSQIIATNHHNDYGVDVQILDSGADFSSF
>NZ_LR698961.1|WP_002956208.1|143276_143633_-|TM2-domain-containing-protein
MNDSALIMLTSAWSNKIPSEAAFMLQGRLEKIPEDKIQALSFIPLKDPIIGLILGLFFGALGVDRFYKGDIGLGILKFLSIFIFIGFFWALADLYFVWQGIKKDNLNKINQQLMILGV
>NZ_LR698961.1|WP_014666247.1|142307_142556_-|hypothetical-protein
MLGFFGIAWLMLKNMPLFIAKLSVWALWILLWIIAAATDSAVVAGFSLVPQIIVYVWFVVDLFIVGKRAREFNYQKIMQSLI
>NZ_LR698961.1|WP_002956205.1|141947_142295_-|TM2-domain-containing-protein
MNNQTAMFLSQWNDSIPEGSGLTLQSRLEKLDESKVSSLAMVSLKSPIIGLTLGLCLGGFGADRFYKGDIGLGILKLITFGGLGIWAIIDWFMVWKGIKQDNLNKISQQLMMLGV
>NZ_LR698961.1|WP_002956204.1|141589_141904_-|hypothetical-protein
MKKLGVFVMSVVVAGMLNGCFDSTPSCDDKVITQHLNDVLTELYKNIATFSLSEYKTERVDDNAKKVTCQAKISITAFGQTNTDILRYTAQNTGKDIEVEILDN
>NZ_LR698961.1|WP_002956203.1|140915_141455_-|ion-transporter
MFSAFIRKLQGFLESTSWSVFITSVILINSACLGLETIKFIHKHFGEILSIIDYICLGIFVMELGLRILAFRLKFFIGKDWGWNWFDFIIIAVSLFAVGGLAVLRAFRVIRIFRLLSVIPTMRLVSAAMLHTIPSMISIMVLLIIFYCIYGCCVSISLERRSRSGLEIWAIAFIRSFKL
>NZ_LR698961.1|WP_015453216.1|154719_154947_+|hypothetical-protein
MRLYVLYRFLVVALAYVFMLMQFVRKCGSVSSAKSLVWLLTPLPYKENGNKDKRKFSLRVLSYVENAFKCLVVES
>NZ_LR698961.1|WP_002957387.1|156028_157447_+|O-antigen-ligase-family-protein
MGFIKKYNQEITLGLFCVGMLCYALGLSSFGKSLKTQTFFHIGGLLFIFYNYRLFSRALWKILSVPICCFVIVCLLGILTIFDDVWVRQISVVLKSVNQHIVGYFVLFVSMFLFGMYGKAKNVFFFLAAFVLLCVLEVCSTICLGLKNGLLNTDNIPFFFQVVFTYNIWLIAPASMSLAGVFTFKKWTYKILSFIGLILSLFAMLANGERSFLVAFVGMLFIPFFVWQYKHKLKVLLFVLCIGITFVIGFYHASKSFSDRYNFAHMIDNFVVVWNTNPIEMGQYDKLCFSKYIDCLPESLALGQNEMTWEHSSLSRINMTKSTLLAVADSPFKPHIVGVFQIGEYLWRYYSLKNHQNRSYINFENNSNNMNMNGYNHPHNFAVSLLFSYGVIGFVCIVIFQFFLLYSGYRCMQKQEYRWKSFWGLSLIIFVCGICIQSLFDALYPQILQCIFIWCGVVVGLGWRDENLTNNQ
>NZ_LR698961.1|WP_015453217.1|157421_158855_+|glycosyltransferase
MKILLTINDISITGGAERVCVNLANALSELGHQVSVLSFYRANAILPYRLNESVNLHIWHNIAEVEYAKKQCGNILSKMYYKNLYKFILSLQVSQRFSHFDVIISNCATYTPFFKYSKTHYCRIIHLNFSKYHSRNNYFDVLIILSSAELSTWQYYHNNIKVIPNFLPNISQKNTDSNQRRIISVGRMDRGDQKGFLRLIDIWEKVQERMGGLRGLGCKNDENLDSNLCYAKPTSCHTERSEVSKNLESKKDISPFSKANTIRKDFVHTCKYDKIDSHETILDSKQISAEVVCDDFKSCEALSARSLSINDEARKANSLKRAETATHKKSLESWQLIIVGSGVLQEQIESKIKEKNLQDSIILKPFTKDVEKEYLSASIYAMTSYVEGFPMVLLESCSYALCPIAFDVATGPSDIIESHISGYLIEDNDLQGYADKLFTLMSDKDKRESMGLKAKRRVKEKFSKEVIMPLWEEVFRG
>NZ_LR698961.1|WP_002957385.1|158858_159950_+|glycosyltransferase
MKKKGMENIKFFIIVPIYNVESYLKECLDSIIYQTYTEFEAILVDDGSTDSSWAIAEKYVKKDSRLMLIHQENQGVSMARNKGLDVARQKSLIPPPQQESHNTTNKSYIVFVDSDDYLELNALEHISKVLIKENVDVLIESHIIVRDEKGGKKSPCDFRVFAPHIKGRYTPKELVENMRGQTLITSDWAFTIRTDFIFKNSIRFIPHIIYEDVPFCTEVAMKAQSLYVDDTCVYNYRLSPNSIMRGRQTRDKKIKIAFSRFKILQYFKILQQEARDKGSIEITSFYESIICSNVNGLIRFLGVVGYVSELGFTKADLKPFLPCIKGKYRFCYHFPRIYAFPKRLRLTFQALWERLASKVMGKV
>NZ_LR698961.1|WP_014666253.1|160038_160749_+|LPP20-family-lipoprotein
MKNGLLKSSIVASFAVFALSGCGDLLNVGDAGGANNGLIPPSASNQPMYAPIQAPTYPPMPGYNTNPNLISKPTSGNQKINTLVVEKVEVPGLNKDNLEPKFDRDRDEYIGRNDTNNIPNSPMLTPENEITLSAVGIGVSPENSLSPSQAFAMAKRAAIVDAYRQIGEKMYGIRVNAQDTVRDMMLQSSTVKTKVQALIRNAEVLETVYKDGLCQVNMELKLDGRIWHKILSNARA
>NZ_LR698961.1|WP_002957383.1|160766_161384_+|hypothetical-protein
MNAIVGVFKRTFLGSIVFLLPFLHFFLLALFLAFFLASCAWLESFEDPDINPNQPPVLEPTKFKILLIDTPRVKFYDFASFKYNKTSKKLNVELYKLGKPVSEIVVTPKEVCMAKQCTSKWIAVKSFFGEVSYPNLFSDILAARDIFDGEGKRVSNDGTLFVQWFVRGGQEFYYERSKNKVLFKNLTANITIGIEDYIPPSSSTN
>NZ_LR698961.1|WP_002957382.1|161513_162500_+|ornithine-carbamoyltransferase
MRHFLTLNDFSKDEILAVTNLALKLKQELRNSNHTPYLKGKILAMIFEKSSTRTRVSFEGGIYQLGGHGMFLSHKDIQLGRGEPIKDTSRVISSMVDMVMMRTDRHEKLQEFAEYSSVPIINGLSDDFHPVQLMADYLTMLECGIALPDGIHKNGLKKPIVAYIGDGNNMAHSWINLAAILGFELRVASPLGYFPRTDIIESALKTCKQSGGAIHIMQEPQKAVSGVNVVVTDTWASMGQEEQKKEREKAFVGFCVDDSLMNLAQEDAIFLHCLPAYRGQEVSESVLEGKQSRVFQEANNRLHAQKAIMLALVRLNNLPLAYPLEMEL
>NZ_LR698961.1|WP_002957381.1|162500_162944_+|DUF2603-domain-containing-protein
MKDIKQDKWLESKEKIIQENLGILRQLEDDTMLLAMQRGEFSKDELWFLQDEQGEEYVVFPQKLFVRLLSRIKNMQEEKLVMKLEKDIISQMPIDLDDAMAVATNILESLRLKDGNLPEINTAILAKDIKKKHPNLFFDIDYLRKPR
>NZ_LR698961.1|WP_002957380.1|162976_164350_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSQNIDFNAFVKYSKSAPRYTSYPTAVEFRESWNDTSYKEALKEADFTSLPLSLYTHLPFCRSACYFCGCNVVYTSKEEKKERYIHYLKKELALLKDSMDTSREVVQFHFGGGTPTFFNAKELESVIGLIRGVFTNFAKNAEVSCEVDPRFFSREQMAVLKENGFNRLSFGVQDFDERVQEAIHRIQSVEIVSNAIALAREFGTESVNFDLIYGLPYQSEQSFADTLQKVVGLKPDRLAIFNYAHLPWMKKTMRKIDETTLPNPAQKLEILKNTIAFLQEQGYMMIGMDHFAKKSDELYLAKAKNELRRNFQGYTTRGFSQTIGIGLTSISEGLRYYSQNYKDMQEYEKALDEGRLPVERGVKLSEKDILRKEVIMGLMNNLRLDFKGIEKRFGIEFRAYFANELESLREYEELGLIQITPSNIETSPTGGMLIRNIAMVFDTYLQNDTTKRFSKTI
>NZ_LR698961.1|WP_002957379.1|164358_165672_+|(Fe-S)-binding-protein
MLDLQSVASACVKCGKCIPNCTIYMANRDEVTSPRGFLDLLGAYKRGDLELNSQSREIFESCFLCTTCVTHCPSSLPVDVAIESVRVDIAEKYGIAWYKRAYFYLLRHRKAADFVFRFVHFIMPCAFKEENGRLVSRLKLFKGVDSKRAKRSVFPVWRKSFLQKYQGEILPTAKTAPKNALQHNRVAIFIGCLSNYNYVSVGESLLEILNHLGIRAFVPHLQECCGAPAFFTGDVKSVVHLAKKNIDYFESFWDSIDAMIIPEATCAAMIKKDWLHALDSDSTLKDYAQRLEKLLPKIYMASEWLYHHTPLSEIIPQNLAGESITYHDPCHARKVLGVYKEPRVLLSKGFRLKEMSDSSRCCGFGGISMQSSRYDLTLKAGVPKAEMIERSGAEIVSAECGACRMQIDNVLTQIDSKVRFAHPLELIAQALKGESVK

Crispr_ID: NZ_LR698961_2

• CRISPR_ID: NZ_LR698961_2
• CRISPR_location: 1362505-1364592
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 31 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_LR698961_2

Consensus_repeat	Method
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CRISPRCasFinder
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CRT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	PILER-CR

spacers of NZ_LR698961_2

>2.1|1362541|30|NZ_LR698961|CRISPRCasFinder,CRT
TAGAAAAGCCGGTAATGGAAGTGTCGGTGG
>2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT
TAAAAGACGATAAGGGACGAACCAATGATG
>2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
AAAAGAAAAACGACGCCTTCGGCGGCGATA
>2.4|1362739|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TTTGTTGTCTTTTGTAGCATAAAGCTCTTG
>2.5|1362805|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
ACAAATTCCAATAAGATGAGCGATTTCGGC
>2.6|1362871|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TTTTGGACTTGGTGCTATCCCCGATGTTGTG
>2.7|1362938|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TAATCCCGCTATTATAATTATTTGTGTCAT
>2.8|1363004|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
ATACGCACATTTATAAATGATGAGACATAT
>2.9|1363070|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
AAAATCATTACGAGTAGAATTCTCAAATAG
>2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
AGAGGATTTATTTGAGTCTCTTGCTCCTAT
>2.11|1363202|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
GAGATATGGGAGGACATCAGCGGGGATTTTG
>2.12|1363269|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
CTAAGCTTTAATGTGCCATCAGAATGATTT
>2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TCCTTTTGATAAGCATTATAGTAACTTTGT
>2.14|1363401|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
CTATGTTACTACTAAAAAATACAGGTGGGAC
>2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
ATTGTCAATGTCCAAGTCGTAGTCGTACGT
>2.16|1363534|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
GGGAGTCCTGCGAGTCAAACAATCACTAGC
>2.17|1363600|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
AAATTAAGGGCAGATACAATGCCTGCGCTT
>2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
GCCGATTTGTTTTTTTGCAAAAAGAACCTC
>2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TCTGATCAAAGAGTTAATGTTGTTTTGCAT
>2.20|1363798|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
AGAAGCAAGGCGGAGGTCGCGGATGTCTAAA
>2.21|1363865|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
CTTGGACTCGGTGCAATCCCCGATGTCGCT
>2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
AATTGGAGAATCTTTTCATTTTCTTGGAAG
>2.23|1363997|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
GATTCTAGGTGTGGAATGTGTGAGTGTATC
>2.24|1364063|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TACATTTCGTGGGGATATATACCGCTTCCT
>2.25|1364129|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TTTTGATTTGCTTTTGTCGATAACTTCATC
>2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
ATAATTTAGATTCTCCTTTTTGAAATTTTTA
>2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
ATAATTTAGATTCTCCTTTTTGAAATTTTTA
>2.28|1364329|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
TCTAAAGTGTAATGGAATGCTGTTTCTTAT
>2.29|1364395|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR
GGAGCGGTGATTGGAGCAAGTATGCTAAGC
>2.30|1364461|30|NZ_LR698961|CRISPRCasFinder,CRT
AAAAGTCGTTCGTAGTTTTCTTTTTCTAAT
>2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT
AGTAATTCTATATTTCAAATAAAGTTTTAA

CRISPR arrays and Neighbor proteins around NZ_LR698961_2

CRISPR arrays

The CRISPR arrays of NZ_LR698961_2

>merge|NZ_LR698961|2|1362505-1364592|CRISPRCasFinder,CRT,PILER-CR
ATTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTAGAAAAGCCGGTAATGGAAGTGTCGGTGGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTAAAAGACGATAAGGGACGAACCAATGATGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAAAAGAAAAACGACGCCTTCGGCGGCGATAGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTTTGTTGTCTTTTGTAGCATAAAGCTCTTGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATACAAATTCCAATAAGATGAGCGATTTCGGCGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTTTTGGACTTGGTGCTATCCCCGATGTTGTGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTAATCCCGCTATTATAATTATTTGTGTCATGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATATACGCACATTTATAAATGATGAGACATATGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAAAATCATTACGAGTAGAATTCTCAAATAGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAGAGGATTTATTTGAGTCTCTTGCTCCTATGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATGAGATATGGGAGGACATCAGCGGGGATTTTGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATCTAAGCTTTAATGTGCCATCAGAATGATTTGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTCCTTTTGATAAGCATTATAGTAACTTTGTGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATCTATGTTACTACTAAAAAATACAGGTGGGACGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATATTGTCAATGTCCAAGTCGTAGTCGTACGTGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATGGGAGTCCTGCGAGTCAAACAATCACTAGCGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAAATTAAGGGCAGATACAATGCCTGCGCTTGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATGCCGATTTGTTTTTTTGCAAAAAGAACCTCGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTCTGATCAAAGAGTTAATGTTGTTTTGCATGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAGAAGCAAGGCGGAGGTCGCGGATGTCTAAAGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATCTTGGACTCGGTGCAATCCCCGATGTCGCTGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAATTGGAGAATCTTTTCATTTTCTTGGAAGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATGATTCTAGGTGTGGAATGTGTGAGTGTATCGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTACATTTCGTGGGGATATATACCGCTTCCTGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTTTTGATTTGCTTTTGTCGATAACTTCATCGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATATAATTTAGATTCTCCTTTTTGAAATTTTTAGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATATAATTTAGATTCTCCTTTTTGAAATTTTTAGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTCTAAAGTGTAATGGAATGCTGTTTCTTATGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATGGAGCGGTGATTGGAGCAAGTATGCTAAGCGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAAAAGTCGTTCGTAGTTTTCTTTTTCTAATGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATAGTAATTCTATATTTCAAATAAAGTTTTAAGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT

>NZ_LR698961|2|1|1362505-1364592|CRISPRCasFinder
ATTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TAGAAAAGCCGGTAATGGAAGTGTCGGTGG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TAAAAGACGATAAGGGACGAACCAATGATG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAAGAAAAACGACGCCTTCGGCGGCGATA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTGTTGTCTTTTGTAGCATAAAGCTCTTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ACAAATTCCAATAAGATGAGCGATTTCGGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTTGGACTTGGTGCTATCCCCGATGTTGTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TAATCCCGCTATTATAATTATTTGTGTCAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATACGCACATTTATAAATGATGAGACATAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAATCATTACGAGTAGAATTCTCAAATAG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGAGGATTTATTTGAGTCTCTTGCTCCTAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GAGATATGGGAGGACATCAGCGGGGATTTTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTAAGCTTTAATGTGCCATCAGAATGATTT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCCTTTTGATAAGCATTATAGTAACTTTGT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTATGTTACTACTAAAAAATACAGGTGGGAC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATTGTCAATGTCCAAGTCGTAGTCGTACGT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GGGAGTCCTGCGAGTCAAACAATCACTAGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAATTAAGGGCAGATACAATGCCTGCGCTT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GCCGATTTGTTTTTTTGCAAAAAGAACCTC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCTGATCAAAGAGTTAATGTTGTTTTGCAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGAAGCAAGGCGGAGGTCGCGGATGTCTAAA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTTGGACTCGGTGCAATCCCCGATGTCGCT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AATTGGAGAATCTTTTCATTTTCTTGGAAG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GATTCTAGGTGTGGAATGTGTGAGTGTATC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TACATTTCGTGGGGATATATACCGCTTCCT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTTGATTTGCTTTTGTCGATAACTTCATC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATAATTTAGATTCTCCTTTTTGAAATTTTTA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATAATTTAGATTCTCCTTTTTGAAATTTTTA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCTAAAGTGTAATGGAATGCTGTTTCTTAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GGAGCGGTGATTGGAGCAAGTATGCTAAGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAAGTCGTTCGTAGTTTTCTTTTTCTAAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGTAATTCTATATTTCAAATAAAGTTTTAA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT

>NZ_LR698961|2|1|1362505-1364592|CRT
ATTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TAGAAAAGCCGGTAATGGAAGTGTCGGTGG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TAAAAGACGATAAGGGACGAACCAATGATG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAAGAAAAACGACGCCTTCGGCGGCGATA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTGTTGTCTTTTGTAGCATAAAGCTCTTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ACAAATTCCAATAAGATGAGCGATTTCGGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTTGGACTTGGTGCTATCCCCGATGTTGTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TAATCCCGCTATTATAATTATTTGTGTCAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATACGCACATTTATAAATGATGAGACATAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAATCATTACGAGTAGAATTCTCAAATAG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGAGGATTTATTTGAGTCTCTTGCTCCTAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GAGATATGGGAGGACATCAGCGGGGATTTTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTAAGCTTTAATGTGCCATCAGAATGATTT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCCTTTTGATAAGCATTATAGTAACTTTGT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTATGTTACTACTAAAAAATACAGGTGGGAC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATTGTCAATGTCCAAGTCGTAGTCGTACGT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GGGAGTCCTGCGAGTCAAACAATCACTAGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAATTAAGGGCAGATACAATGCCTGCGCTT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GCCGATTTGTTTTTTTGCAAAAAGAACCTC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCTGATCAAAGAGTTAATGTTGTTTTGCAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGAAGCAAGGCGGAGGTCGCGGATGTCTAAA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTTGGACTCGGTGCAATCCCCGATGTCGCT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AATTGGAGAATCTTTTCATTTTCTTGGAAG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GATTCTAGGTGTGGAATGTGTGAGTGTATC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TACATTTCGTGGGGATATATACCGCTTCCT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTTGATTTGCTTTTGTCGATAACTTCATC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATAATTTAGATTCTCCTTTTTGAAATTTTTA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATAATTTAGATTCTCCTTTTTGAAATTTTTA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCTAAAGTGTAATGGAATGCTGTTTCTTAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GGAGCGGTGATTGGAGCAAGTATGCTAAGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAAGTCGTTCGTAGTTTTCTTTTTCTAAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGTAATTCTATATTTCAAATAAAGTTTTAA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT

>NZ_LR698961|2|2|1362637-1364460|PILER-CR
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAAGAAAAACGACGCCTTCGGCGGCGATA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTGTTGTCTTTTGTAGCATAAAGCTCTTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ACAAATTCCAATAAGATGAGCGATTTCGGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTTGGACTTGGTGCTATCCCCGATGTTGTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TAATCCCGCTATTATAATTATTTGTGTCAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATACGCACATTTATAAATGATGAGACATAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAAATCATTACGAGTAGAATTCTCAAATAG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGAGGATTTATTTGAGTCTCTTGCTCCTAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GAGATATGGGAGGACATCAGCGGGGATTTTG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTAAGCTTTAATGTGCCATCAGAATGATTT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCCTTTTGATAAGCATTATAGTAACTTTGT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTATGTTACTACTAAAAAATACAGGTGGGAC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATTGTCAATGTCCAAGTCGTAGTCGTACGT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GGGAGTCCTGCGAGTCAAACAATCACTAGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AAATTAAGGGCAGATACAATGCCTGCGCTT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GCCGATTTGTTTTTTTGCAAAAAGAACCTC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCTGATCAAAGAGTTAATGTTGTTTTGCAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AGAAGCAAGGCGGAGGTCGCGGATGTCTAAA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	CTTGGACTCGGTGCAATCCCCGATGTCGCT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	AATTGGAGAATCTTTTCATTTTCTTGGAAG
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GATTCTAGGTGTGGAATGTGTGAGTGTATC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TACATTTCGTGGGGATATATACCGCTTCCT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TTTTGATTTGCTTTTGTCGATAACTTCATC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATAATTTAGATTCTCCTTTTTGAAATTTTTA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	ATAATTTAGATTCTCCTTTTTGAAATTTTTA
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	TCTAAAGTGTAATGGAATGCTGTTTCTTAT
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	GGAGCGGTGATTGGAGCAAGTATGCTAAGC
GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR698961.1|WP_002957406.1|1360960_1361653_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957391.1|1376291_1378163_-|site-specific-DNA-methyltransferase	unknown	unknown	gnl|CDD|225100
NZ_LR698961.1|WP_015453610.1|1359584_1360961_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957400.1|1364749_1365184_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_LR698961.1|WP_002957409.1|1358118_1358655_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957403.1|1362254_1362425_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957393.1|1372276_1373089_-|metallophosphoesterase-family-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957399.1|1365194_1366091_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NZ_LR698961.1|WP_015453609.1|1357695_1358094_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957405.1|1361847_1362165_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_015453615.1|1373310_1376292_-|type-III-restriction-modification-system-endonuclease	unknown	unknown	gnl|CDD|237972
NZ_LR698961.1|WP_002957397.1|1369385_1369721_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957408.1|1358664_1359573_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002957411.1|1356600_1357077_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_015453608.1|1357126_1357339_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_015453612.1|1366092_1369164_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226044
NZ_LR698961.1|WP_154645880.1|1373101_1373239_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_015453614.1|1370090_1371932_-|TraM-recognition-domain-containing-protein	unknown	unknown	gnl|CDD|378923
NZ_LR698961.1|WP_002957394.1|1371933_1372272_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_014666995.1|1357548_1357686_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LR698961.1|WP_015453612.1|1366092_1369164_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.1e-197	654.0	20.8
NZ_LR698961.1|WP_002957400.1|1364749_1365184_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	7.1e-44	143.5	0.6
NZ_LR698961.1|WP_002957399.1|1365194_1366091_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	3.4e-96	316.3	6.7

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR698961.1|WP_015453615.1|1373310_1376292_-|type-III-restriction-modification-system-endonuclease	gnl|CDD|237972	PRK15483, PRK15483, type III restriction-modification system endonuclease.	0
NZ_LR698961.1|WP_002957400.1|1364749_1365184_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.92759e-41
NZ_LR698961.1|WP_002957399.1|1365194_1366091_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.66938e-112
NZ_LR698961.1|WP_015453612.1|1366092_1369164_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_LR698961.1|WP_002957391.1|1376291_1378163_-|site-specific-DNA-methyltransferase	gnl|CDD|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	3.98024e-33
NZ_LR698961.1|WP_015453614.1|1370090_1371932_-|TraM-recognition-domain-containing-protein	gnl|CDD|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	2.39222e-08

Protein sequences

>NZ_LR698961.1|WP_002957403.1|1362254_1362425_-|hypothetical-protein
MVESKQNFNALNDFKSYADENQKQTTNGFSFGSAFSKLKEKGIEAKEAIEKKQNAR
>NZ_LR698961.1|WP_002957405.1|1361847_1362165_-|hypothetical-protein
MSEIKNKTFEDKYNLLGNTLLKVNDILSSDFRRELESLSPSSMSMDKKLLLFSLYHLMNDDYLFYNFKMLLKEKVAQIAECYYFNFGLTDFGLCDLPPQDLPRDL
>NZ_LR698961.1|WP_002957406.1|1360960_1361653_-|hypothetical-protein
MYKVLENDKPSTIVRSNVGDVVVDREFMEKEIQKHLDNPALRGMVTTEEMLSYPKIAKNVEAEYNAEINDHTWKVKANDESVLAYGSREYVKDDKEINRLLTAHSKTERGERTQRQADRVSSATYFNDPDFRGSASAIIPQSSNNDEETYMIPNQNTSHTHFITQDSISNLSLEEQISLAKENQKTLNAMPKASDIDKDINKDNTQENTQTQDTTQRVETQSQKSTLRRK
>NZ_LR698961.1|WP_015453610.1|1359584_1360961_-|hypothetical-protein
MKQKTLLATFIVALIGLNNANAFSLFGMEIKSQAELAKEQQEKAQQKIMELKAKELQEQANREAREALEKQYQNQQAQTPQNNQAISQQASNTRGLGDIIGGGNIGNIVDGALNGNLNGALGGVLDSVLGKLDSQFSNIFSNSLNFINACYETDLKLDIDLGIDTTDVCAMASKLDEIKVNICSLVGGSGTMNKGVSGFQSLCEAKQKEFKDYVSRQANNFAEWATLQNGEKTTDYNAKFASGLSVADFDSKWDINNLLKKDSTISKMLKDGKMKEIEMFMDYTKSYGAKKDIESINMEDIKAPSSMNDYRRGIDDGIKNNRTIIKNANPSQSASLARAKLSKNNKEDMQKLSNQLKSDYNNAKIAEIGNALATSDYKKIAIPTQDYVKLLRKDLQPGAIAQIRRQQAQEVSLISQIEEKWERKYNLAKLLIDKEVILSQKFDETEARKEVNRIVNSN
>NZ_LR698961.1|WP_002957408.1|1358664_1359573_-|hypothetical-protein
MNEIENKEIATISPQEETIQKETITNKNNVEEKTKDKNKKQNEKSKKNAVAKDPHKESLNFHCEQFFGKNWKYIASFLGIAILIFAYELNHISTKMNDLEQVVLENNSKVVLTTSDGRAIKVTKEPLKAEYLKQFAISTYVNNLIVSRSQLTNNFQASQFKDYGEVMDNVPQIRNILTNFMDYKEDEEKGIQVNQVAVGDLRAYVQWLISATAQDKLPEYIAIKDYSVEKYEYTGNKFSTEIIIKVVAQSYILSENNYKQQNGNFKIISEGSFDLNKSSDINPYGLRIERIKIEPIVKSKTS
>NZ_LR698961.1|WP_002957409.1|1358118_1358655_-|hypothetical-protein
MNKEQQGIYDVTFGDKEMTPIFKDIEAIEDAVIEYITMYVKGFHDKRRDKGLGAEHIKLHLDKGSQGEITLEELVNLGYSIREYLKKFENPFLEENGAKIYEWENEEHTRFRVITDIQRGGRQLPLSPSEHQIITFYSDRNLNERMEFKNPLVKEYYDNLQDENENNQSHIAKIKKRR
>NZ_LR698961.1|WP_015453609.1|1357695_1358094_-|hypothetical-protein
MEQEYKDKIEKLNSDLTKLTLDVQKEVKELKEDTLVNGHIDNTANMSFALAEISEEQESSNYEKFLKTLLESDFKALQQEMIEETKRELLTKKVSKNQQGGFKIGMIFNLFGLLSFLLTLWICAKYKLLFFA
>NZ_LR698961.1|WP_014666995.1|1357548_1357686_-|hypothetical-protein
MKSFKKEYKNINYGAYNILIAIVDDEIYFKTEDIKKTLNLDTYKE
>NZ_LR698961.1|WP_015453608.1|1357126_1357339_-|hypothetical-protein
MSHISSINFKKSKDFQVFHNANIRPNYAIGTELSYNRKGYEALKIKQELIQNAIEAYNRTKPPKSSKFQS
>NZ_LR698961.1|WP_002957411.1|1356600_1357077_-|hypothetical-protein
MQDLERLAKHFETKYGFQCYQIAIHRDEGHIDDNGEKVINHHAHLEFITLDKESGKSLFRAELQKPKALRQIQTEVAEILQMEWGQDKRISKRERIEPRKYGAMKEKEREALRKLLDFYDEILGIDTKGLSITEAQQAHKNLVKKTQEKNILKGIDNI
>NZ_LR698961.1|WP_002957400.1|1364749_1365184_-|CRISPR-associated-endonuclease-Cas2
MRILLMFDVPTKTKKEQKQATRFRNELIKLGFFMMQFSVYMKICKGLSSAKSSLNVVKKVLPPYGNVRALIITERQFDNIEILLGNPSFNENVNEDKNLVLFDFDENAGDYRYGMEYQKQEELNTTTTQPKQKIKNRQPSLFEF
>NZ_LR698961.1|WP_002957399.1|1365194_1366091_-|type-II-CRISPR-associated-endonuclease-Cas1
MSFDEAFRSVLVSSEAKLSLQANHLVLKQTNKEAKLFLKDIHFVILESPQILITSALLSAFAKHNIVLLTCDESHHINGIMHSYLGHFQHAKIAKEQMMVSTHKKAIVWQKIVKNKITNQAHILKLHHKSKESDELLSFAKNVSLGDSRNLEAVAAAIYFKALFGKEFHRDEINFINSALNYGYAILRACIVRNVCISGLITWLGIKHDNMYNSFNLCDDLIEVFRPWVDLCVLKLNTLDKEATLRPNDKRELINILQQAALIDGQKHPLSRAIGRYIQSFRSALLGDQTLMVVSFES
>NZ_LR698961.1|WP_015453612.1|1366092_1369164_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKIYSFDIGVASIGWAFIENEVLQDCGIRIFTKAENPKNGASLALPRREARGVRKRLARRRGRLNTIKQLLCKEFGLQLEDYLSNDGELPKAYTASKANPLKSPYELRTLALSQKLDSKDLVRVILHIAKHRGYGNKHAKDSKDTESGKVKKAIEFNRKTLAEKGYRSVGEYLYREFFQQSRISQNNGATEFINVRNKAGNYEHCVAQDMLKEELESILNAQRQFGFSLKQDFESKLLTKIFEQRPLKSFADKVGNCCFIAGEKRAPKDSPSAIEFIALSRTINTLINLSKESGEIYNRAIILQIVESTLKKGEISYKELREIIRLDERLRFKDPRLDYSREIKEAEKVKFLEFKQLKGFKKALGESFTTLAISQLDEIAEHIALIKDRVKLNEKLESYALTKEQREALSNLSFSAHINLSLQALKQILPFMRGDNGEQCLDYDESVEKAGLKALSKDTLKGQMLPPLNEFEPYLSNPVVARALAEYRKVLNVLLKQYGSPHKIHIEYAREAKLSSTERQKYEKEQKDNYAANQAAHKKCQELGLEPSSTNLLKLKLWQEQGGLCLYSGAKITISYLQDPTALQVDHIYPYSRSFDDSYMNKCLVLTKANQEKGNRTPFEAFGTDSAKWGVITTLAQKLPHKKRRRILNTAFNDKEAGFKLRNLNDTSYIARLVADYTETYLEFLPLVESENTTLSKGQKGSKKHIAIVNGVLTSTMRYYLGFASKDRDNHLHHALDAVIIGFMNDSVIKAFSDFKKTQETSKAAYYAHTLSKQEYKKQRAFIQLPSGENFRVSVLEKVESVFVSKPPRKRVRGALHEATFYSPNDPKLLKNYGGTKGVERALALGKMRKVGAKIVSNGAMVRVDIFRHKSSGKFYGVPVYTMDFALGILPNKAVVVGKDQNGVIKDWLEMDSSYEFIFSLYKDDVILVQKKEMQRPELCYFVSFDTSGASIKVAKHDNNFSTLTENQKLLFSNATKEEVVGKSIGIQNLKVFEKWQVSVLGEVKRTQSYPRENISLASKAKK
>NZ_LR698961.1|WP_002957397.1|1369385_1369721_+|hypothetical-protein
MFGTRFELDEEKILREDIYDLDEMYAKIEELATKRAGLTKVSKNHYEFRGEKNAQAHLGILVFNCLKHCDWFAKNVKSWDWLGDSNNPNYVGDLIALFQKDKDNEIWQNRQ
>NZ_LR698961.1|WP_015453614.1|1370090_1371932_-|TraM-recognition-domain-containing-protein
MKIESAKVNLYKPYQNNLCIFLQEEEVLPILLLSAGVLGCIHALLPSFFTIGENIAIGLYMLGVIYAGIMIGLYFVSETKDTKEAVIPNEADKEYLLSLGYEVKKFYGDAVKSGRVKNNKTRPLLINAETMKRHFLVMATIGAGKSVLMKGLIEQYAVLGGGCFIIDGKGTDEFAKEIYGVVASVGREDDFVYLNFLDMDNTHTINPLLSGGALSIYEILIALLIGEENEWKEKQKEFMKCILKLMVYKRDNEKDFVFDFSSLTNMMSLVTLVKTAIEYKHLARYNVGIMDFVKYVSSTIEVDINDFLQGDKENKKWVDEMIKKTSGEGQGIYDVSVCVGAWRNVLTNLSSDYGRIFNAPNPDISLWEATQRNKIIFVTLPTMDSDTTPKELGRLLLGLIKGVAAQKAKFAKESKIPFACFCDELGSYVIEGFGRLESKSRSLGISVVPFFQSPAQIDVVAKNDYERKEIIDVTGVHILMKNMHPETTEFYAKMVEKIKTMSRDYLKRRDGAKGSGATEDTFRIEEKEAIEHNEVVNMNNGEMMIFANGKLHRAIAQTETSLMALGKKTTYQGMSSEKIPLVQYVSKRIFFKKTNEIVRKLGLSYTNAEAMSN
>NZ_LR698961.1|WP_002957394.1|1371933_1372272_-|hypothetical-protein
MIKIKLSTILFIIAIIVSNANAVFCVDFATLNVYEQMTNSKYTQGDNEIGNEIRNITNTIKSEIKQIENNNKTLLKNLKRAKEAESILALKKSFLLKQNNELQSINNNIKAN
>NZ_LR698961.1|WP_002957393.1|1372276_1373089_-|metallophosphoesterase-family-protein
MSNIYFFGDTHGSLDIDKIFMPSYQADDYIIVCGDFGVLWSDETGVFKQDDMLEKEAKLKKRIQTLPCTLLFIDGNHENFNRLNTLKQVERFESIVGEYIKDKCYHLKRGNIYNITGHTIFTMGGALSIDKAWRAERLSWWRQEAITQMELENALHNIQNYKGKIELVVTHTCPQSFLSPLSELINIDHKIHDENPYKLEKIKNALIDNHQKPQFWIFGHWHRDVNFTSDEIEANTLYLHCLKLDKHKNFERFDFRKEIFYAKTRNRHKE
>NZ_LR698961.1|WP_154645880.1|1373101_1373239_-|hypothetical-protein
MRVEAFSRFVQISIEEYNPALTQILNYAKKHFQQISHLNFKKICI
>NZ_LR698961.1|WP_015453615.1|1373310_1376292_-|type-III-restriction-modification-system-endonuclease
MGFSYERNLPHQIKAIECVLNALENARVNPNLNNAYNPLVEISNIDLGKNLNALQRSQSIESAPINPQNRIFDISMETGTGKTYTYTKMALALSQQFNMRKFIIIVPSLAIKANALNFLCDSATKEHFSAEYGFDIVASAIESKKSNSKSKKKLMPSALREFVENDSPKEVHFLIINAQMLTAASMNEDYEQNLCDEFSNPFDALNAVNPVCIIDEPHRFGEDNKAWKKIVDSTKDSKAINPQMIFRYGATFKENKKGQKYHNLIYKLSAIEAFNNNLVKGVEVSVCEANGSEKQAYIEFIGIENNQATFALKEQGKSKAIKEVALGVGESLGVINSNLSHLRVSIKYDSKTPKAQLNNQDENEWLKKGDRINLNAYLPQMQTQMLTEALQAHFALEKVLMQSETKIKPLTLFFIEDIASYRSENKQNEILRIEFEKIAQNLMQENLKEAHGFYKEYLEKSLHNLRGISGGYFSKDNSNKEEYVVSEINEILHDKEKLLSCENIRRFIFSKWTLREGWDNPNVFVICKLRSSGSEISKLQEVGRGLRLPVNEYMSRVGNDSHLGTHYLHYIVNDSERDFAQSLISDINAQSGVIFSENATKLDEKMRQKICEVYEIAEFDLLSELVSSGIVDKKFDFLENGMLKLKELYPNAFDKENLKDGKVRQSGKTQTKAHIRRDNYKILRELWETINQKVILEYKIKSEGEFSALLEVFLREFMQNQAVQSNITTTTKRLEMRDNSASLQEILRQENALDSKSMQYQAMGKSEFLQQSANALLVNVGTLREVLESVGFESQFFNARNIALLKSEFNRFLFENAISGFEVGFAKISSATQPNLHPTAFTDTNGKPYEAIESSNLGIESSDEITPKNYLFDELFYDSAIERENILQNVDRVLVFTKIPKNALKIPVAGGISYTPDFAYVLKCENGEQIYCIIESKGKDLRDLSKVENLKISRAEQFLEKSGIFGAKIQFRAQFESEAITKILQEFLNKNDI
>NZ_LR698961.1|WP_002957391.1|1376291_1378163_-|site-specific-DNA-methyltransferase
MLDRFHALKEYFPQCFDKNGDLMPHKLQEAILDLAQENNAQANTATQDLENEAAFSLSKESYSLNWLGKSYAKLLRHLPTHTLIAQDSAHNAQPQNANSKNVLIKGDNLEVLKHLKNAYYRKVKMIYIDPPYNTGNGDFIYNDERSFTPQSLAQMANIELEEAGSILNLTLKNSSTHSAWLSFMYPRLYIARQLLRDDGVIFISIDDNEQANLKLLCDEIFGEDNFVSCFVWQKKSGGGQAKYFYEGHEYVLIYCKNKDLLQGLFKIKEKGKIETDFLRKIHGKYTNNLKLKNVYEKYPNQLIEHRNLMFEEMDIFLQEKLITQEKYDEIKQNLTNGIYFLKPYNDKFNLVCRNNENNQALMYSIVSGVWTSDGNTENEQLFGKLVFNDPKPVNLLKQLIQSATMQGNSNDIILDFFAGSGTTAQAVMELNAQDNGNREFILVQLDEAIDKSKSKTAYEFCKNELGSENPTIFDITKERIKRASAKIAQNSNLDLGFKIYELRENDFDSQNGALFKEVDKNALLESFRLQDSTPLSVENQTIDLGGYKAIRAGEKLYLLNSGFEMKHLQKLISLIDAQKDFVIKEISYLNDAFESARIREIEEGIKSYSNKKGLKILVRGRFI

Crispr_ID: NZ_LR698961_3

• CRISPR_ID: NZ_LR698961_3
• CRISPR_location: 1889862-1890162
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 4 spacers
• Cas_protein_info: csm3gr7,csx19,cas10,csx23

Consensus repeat of NZ_LR698961_3

Consensus_repeat	Method
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	PILER-CR
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	CRISPRCasFinder

spacers of NZ_LR698961_3

>3.1|1889899|29|NZ_LR698961|PILER-CR,CRISPRCasFinder
TGTGTGTCCCATGTAATTGGAATTTTGCC
>3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder
TGATTTGATTATCGCGTTAATACTTTTTG
>3.3|1890031|29|NZ_LR698961|PILER-CR,CRISPRCasFinder
ACTGCTAAACGCATAGGTGTTCAGCTCTA
>3.4|1890097|29|NZ_LR698961|CRISPRCasFinder
ACTGCTAAACGCATAGGTGTTCAGCTCTA

CRISPR arrays and Neighbor proteins around NZ_LR698961_3

CRISPR arrays

The CRISPR arrays of NZ_LR698961_3

>merge|NZ_LR698961|3|1889862-1890162|PILER-CR,CRISPRCasFinder
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACTGTGTGTCCCATGTAATTGGAATTTTGCCGGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACTGATTTGATTATCGCGTTAATACTTTTTGGGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACACTGCTAAACGCATAGGTGTTCAGCTCTACGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACACTGCTAAACGCATAGGTGTTCAGCTCTACGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC

>NZ_LR698961|3|3|1889862-1890096|PILER-CR
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	TGTGTGTCCCATGTAATTGGAATTTTGCC
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	TGATTTGATTATCGCGTTAATACTTTTTG
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	ACTGCTAAACGCATAGGTGTTCAGCTCTA
CGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC

>NZ_LR698961|3|2|1889862-1890162|CRISPRCasFinder
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	TGTGTGTCCCATGTAATTGGAATTTTGCC
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	TGATTTGATTATCGCGTTAATACTTTTTG
GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	ACTGCTAAACGCATAGGTGTTCAGCTCTA
CGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	ACTGCTAAACGCATAGGTGTTCAGCTCTA
CGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR698961.1|WP_015453824.1|1898683_1900537_+|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl|CDD|226362
NZ_LR698961.1|WP_002955693.1|1891823_1892969_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl|CDD|237139
NZ_LR698961.1|WP_002955702.1|1900546_1900915_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_002955696.1|1895626_1897009_-|CZB-domain-containing-protein	unknown	unknown	gnl|CDD|206779
NZ_LR698961.1|WP_002955694.1|1892965_1893517_-|DUF507-family-protein	unknown	unknown	gnl|CDD|367914
NZ_LR698961.1|WP_015453819.1|1887087_1888116_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl|CDD|133463
NZ_LR698961.1|WP_002955704.1|1901746_1902439_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|349760
NZ_LR698961.1|WP_002955678.1|1879576_1880647_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR698961.1|WP_014667283.1|1882430_1882709_+|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_LR698961.1|WP_002955680.1|1881292_1881616_+|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	unknown
NZ_LR698961.1|WP_002955703.1|1900911_1901760_-|Fic-family-protein	unknown	unknown	gnl|CDD|225718
NZ_LR698961.1|WP_002955687.1|1885042_1886824_+|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NZ_LR698961.1|WP_002955679.1|1880712_1881159_-|CRISPR-associated-DxTHG-motif-protein	unknown	unknown	gnl|CDD|187863
NZ_LR698961.1|WP_015453817.1|1882721_1883825_+|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl|CDD|274208
NZ_LR698961.1|WP_002955698.1|1897285_1897741_+|transcriptional-repressor	unknown	unknown	gnl|CDD|366663
NZ_LR698961.1|WP_015453822.1|1890405_1891815_+|sodium-dependent-transporter	unknown	unknown	gnl|CDD|271367
NZ_LR698961.1|WP_002955684.1|1883840_1884635_+|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl|CDD|377130
NZ_LR698961.1|WP_015453818.1|1884615_1885050_+|TIGR04423-family-type-III-CRISPR-associated-protein	csx19	mkCas0122_csx19_CAS-III-D	gnl|CDD|275216
NZ_LR698961.1|WP_015453823.1|1893580_1895593_-|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl|CDD|273955
NZ_LR698961.1|WP_002955690.1|1888143_1888746_+|recombinase-family-protein	unknown	unknown	gnl|CDD|184041

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LR698961.1|WP_002955684.1|1883840_1884635_+|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	8.2e-18	60.2	0.0
NZ_LR698961.1|WP_015453817.1|1882721_1883825_+|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	7.7e-60	197.7	0.5
NZ_LR698961.1|WP_015453818.1|1884615_1885050_+|TIGR04423-family-type-III-CRISPR-associated-protein	csx19	mkCas0122_csx19_CAS-III-D	3.1e-73	239.7	2.6
NZ_LR698961.1|WP_014667283.1|1882430_1882709_+|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	2.3e-18	61.1	0.0
NZ_LR698961.1|WP_002955680.1|1881292_1881616_+|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	8.5e-38	123.7	0.6
NZ_LR698961.1|WP_002955687.1|1885042_1886824_+|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	3.2e-86	285.4	25.9

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR698961.1|WP_015453824.1|1898683_1900537_+|relaxase/mobilization-nuclease-domain-containing-protein	gnl|CDD|226362	COG3843, VirD2, Type IV secretory pathway, VirD2 components (relaxase) [Intracellular trafficking and secretion].	3.88141e-10
NZ_LR698961.1|WP_002955703.1|1900911_1901760_-|Fic-family-protein	gnl|CDD|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.89177e-20
NZ_LR698961.1|WP_002955696.1|1895626_1897009_-|CZB-domain-containing-protein	gnl|CDD|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	9.84292e-42
NZ_LR698961.1|WP_002955694.1|1892965_1893517_-|DUF507-family-protein	gnl|CDD|367914	pfam04368, DUF507, Protein of unknown function (DUF507). Bacterial protein of unknown function.	2.53779e-72
NZ_LR698961.1|WP_015453819.1|1887087_1888116_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl|CDD|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	3.3015e-50
NZ_LR698961.1|WP_002955704.1|1901746_1902439_-|AAA-family-ATPase	gnl|CDD|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.40211e-34
NZ_LR698961.1|WP_002955693.1|1891823_1892969_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl|CDD|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_LR698961.1|WP_002955679.1|1880712_1881159_-|CRISPR-associated-DxTHG-motif-protein	gnl|CDD|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	6.66365e-06
NZ_LR698961.1|WP_002955687.1|1885042_1886824_+|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.17293e-72
NZ_LR698961.1|WP_015453817.1|1882721_1883825_+|hypothetical-protein	gnl|CDD|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	1.59918e-08
NZ_LR698961.1|WP_002955698.1|1897285_1897741_+|transcriptional-repressor	gnl|CDD|366663	pfam01475, FUR, Ferric uptake regulator family. This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.	8.79712e-44
NZ_LR698961.1|WP_015453818.1|1884615_1885050_+|TIGR04423-family-type-III-CRISPR-associated-protein	gnl|CDD|275216	TIGR04423, predicted_protein, CRISPR type III-associated protein, TIGR04423 family. Members of this protein family occur only in species with CRISPR systems, in the context of type III systems that resemble type III-A (MTUBE) and III-B (the RAMP module). It occurs in several species of Prevotella, Helicobacter, Campylobacter, and Bacteroides.	7.28727e-49
NZ_LR698961.1|WP_002955684.1|1883840_1884635_+|hypothetical-protein	gnl|CDD|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.77316e-07
NZ_LR698961.1|WP_015453822.1|1890405_1891815_+|sodium-dependent-transporter	gnl|CDD|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.56939e-130
NZ_LR698961.1|WP_015453823.1|1893580_1895593_-|PBP1A-family-penicillin-binding-protein	gnl|CDD|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LR698961.1|WP_002955690.1|1888143_1888746_+|recombinase-family-protein	gnl|CDD|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	2.47127e-80

Protein sequences

>NZ_LR698961.1|WP_002955690.1|1888143_1888746_+|recombinase-family-protein
MHYIYLRVSSHKQSVKNQYFEIQKWCEQRNIHTYRVIAETMSGAISPDYRQLGILLKKAQKGDCLIIAEISRLGRSILQIMSVLHQCMERGITIYSIKENYELGDNLNSKVLTFAFSLSVEIERHLISQRTKEALSRIKSEGGKLGRPRGIAPLQSLKLYENKDSIIKMYQNRIPMVRIAKRFNVNRKTLACFLKRLGLL
>NZ_LR698961.1|WP_015453819.1|1887087_1888116_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MLLWALSSFFISFVLCVGIIVSSRRFGVFIDSGTSHKPQRFHTQATPRAGGIGIFSAFALLILYAYFTQISLGINTQTLIILLGSGIIFASGLIEDFSGNLSPKMRLIMQCVAAFGVCAWIDVYLKDLSLGFTLPYLIGLFFTTFALVGVSNAINIIDGFNGLASGVCLLILAGIMYVAYDVKDVEIFYCALVLFFGILGFFVRNFPLGKIFLGDGGAYFLGFILGMLLVLLTQRHTESVSAFFGLSIMIYPVWEVVFSIWRKRFKRKMSATKPDKVHLHMLVFKRITHSNKNTSLILLAYNVPFVMLSVCFYQHTWLLLAFCGIFALLYGYFYARLIRFGM
>NZ_LR698961.1|WP_002955687.1|1885042_1886824_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MIDITAPYRFVRTYNKIFYPSWGQKQGKDISFDMPYIDSQSGQINITITAKSPIFVGNGTGKQQDDTGKNKSDKTDKPQEFFNHNGTYYIPGSSIRGMIRTIATILSFSKMSLDDKTLSCRDINNPAYKKKAMKQNQTFIGWLYVKSKKWYIDEIGTLTKEHKISYEKLEQLFGKSLIANLKNKQAHAKYELLQHKNLHLKEGTIILTGFFGKKKNEFIFPHTITQTHNLTNEQVKTFQEAYYIGTPNESKDWTKRWKQEIKQGKKVPIFFQKTQNNQIRHFGLSMLYKLPYDNSTQALYTRSLAEYNKSYLDCVDRIFGFVRDDTQSHENKALKGRISFSHFKAQGSPKSFAKQSLILSTPRLTFYPYYIDQTPDTLFKTYDDQDSKLSGFKFYVPRHNIMDHKGNGNSNILSHIIPLDKGTTFTGTLRYFNLKKEELGLLLLALTFLQDKHYYKIGGAKPYGFGDCHIKLHTSLNTQEYINAYIDFVKREFGDDPINSQSAKDLLEVSQQMPSDEYLDYMELQEFTKLKSENQSKFGKRHSHNGGNNPHRNHHHNSPNPKAPKPYNESREHKNKDDAFKNTIRISQKGQKH
>NZ_LR698961.1|WP_015453818.1|1884615_1885050_+|TIGR04423-family-type-III-CRISPR-associated-protein
MTQADFKAFYANLTESFEGYIQLSDSKDFIILDNEPLPQWEALHNGKNFIHQMCLYSPTTQRSINATQINNGFNVLDKNLADFKKSAKSEVEFLVNAQAHKRNISQIKITQIWQEVADELCCDFNVLMPTFTLFSGFTKGENND
>NZ_LR698961.1|WP_002955684.1|1883840_1884635_+|hypothetical-protein
MSHNITFKITFLDYWHLGSGQSGGAKYDSSVIKDRQGFPYVPGKTLKGLLREYAEGEFAKVCFGEQGETRGMCYFSNAYIESSTRAELLKHNHQFLLVDSISATKINDKGVAESGSLREIEVVIPLSLYGSIENVPNEFVSLMSAALKKMKRMGLNRTRGKILLVDMYYNKAKGKTFPHIKIDNFTGGGIDGALFQEKVDTLESFKLKIWLEKGIDKTALEAFEHALCDIANGLLALGGASSKGHGYFQGSITKNGENYDTSRF
>NZ_LR698961.1|WP_015453817.1|1882721_1883825_+|hypothetical-protein
MNEYKSASAKLEKNLKIARNKIALPLDTHLSICAINPRKGLSAIPSKLATNKKEMFDTSVNQKLQAFNEAVNKNKALAQDINAIKNKKNKIAVIHIDGNGLGGIVRGLEKDEMKTFSQKLDSATKEAYKQTLESIIDSNPTYQNALRDIILGGDDVTLICNANIALDLSEKFLENFESNTQNIHKQSSLTACAGIAYCNEKFPFFYAVKLAEDLCAYAKKDAKEINPKLPPSCLMFHNIQGSYVEGFSQFLDEELSINSVRCDFGPYYLRDIENKPSIKAFKSLIQDFKKDNSPKGRLRDWLSSLQFNKEYAKAESIRIAEIFKDKWKGENLATLHRELSLANLILVIDNVEKTPIYDILQILSVQD
>NZ_LR698961.1|WP_014667283.1|1882430_1882709_+|hypothetical-protein
MGQYLYGASLQGLQEFIFKTNKLREIVGASEIIKTFDEIDLKAEFHLSTEPDVILKAAGNLRVIFDNESDVKKVVKYLPKKILQSAYGVNLS
>NZ_LR698961.1|WP_002955680.1|1881292_1881616_+|hypothetical-protein
MNIISTFISLGTFGIVAYRFGRDNHKISIIIHRDNLEQEIPIKILRKQVTRSEILGILGTLDRESNFSIAYTGEKAFFDNMVAVQSGWRARKIHIYIQEGDKFNYAL
>NZ_LR698961.1|WP_002955679.1|1880712_1881159_-|CRISPR-associated-DxTHG-motif-protein
MLIIMILGMVGINKDRQKSFAKYTSQDFNIIDKEYSNSTDVLLSNFPNAKFEFITTKEALERQKLVFDDRLEYLHKLESHAHELKSNDDIDLVLRKVLEIIQTSKDSHQKILLDITHGMRHQPLMAAFGATLARVDVKADIQFSMLKR
>NZ_LR698961.1|WP_002955678.1|1879576_1880647_-|hypothetical-protein
MLNGFISTLSMPKLPHSLEFIQDLQKFSNDLHTNAFSSLFQTSKKTLESLQDFQKDYQALSSLTQEIAKILHRFDRIQDLPEYQQYYEISHIMFEKHYYLISVTYAFEALPKYLIGKFQQCGIMKDDESLSQYDKAQAINQFVLEKIANYKVFAYDKACFYYDKHKAEFENLREILSKLKDIRNNLVHINDKELSDKGLDIAQDLQNNYARFYDLCIRQDSFTQIDIVVYDVEKLGLSIYDYFNSTFGIKLSKIFFKQIDAMKKKNFPIPKTSPSKFQNSKKAQALIALLASFDDNTEYLSLEQGRAFDEILNPPPKKPTQTHSPKYSPTQKPIQQDSQTSAQKLNQHFKGTRIDK
>NZ_LR698961.1|WP_015453822.1|1890405_1891815_+|sodium-dependent-transporter
MNNFSKIGFVLATLGSSIGLGHIWRFPYMAGENGGGAFVIFYLILAILIGASMLMAEMLLGNKARSNPLDNFTILNNLNKLPPNTPTQDHNTTDSKSGSSLMWLGFSTIAAPLILSFYAVVMGWIMYYLFYVSFHLPTNINEADVIFNEITSRSLLWQSVCFFGVIAITGIIVGFGVKRGIESLNLILMPLLFIIFVGLLVYAMNLPEFSKAWAFMFHFEPSNITTKTIIESLGQVFFSLSLGVGTIAVYAASAKQNENLFQSSVWVVVSGIVVSLVAGLMIFTFIYHFKGVPSDGVGLLFKSLPLAFNALGGSGAVISMFFFIAVLFAGITSTVSMLEPGVSILRDKCHFSQIKATFILSLAILVLGFLVILWANAEMELPLIFGQPLFGVLDSITSSFLMPVGMLIILTFVGWKIRANHLRTWTPYLPQWLFVGWLWILRIIAPAIILIVLASKYFDIVGFINSLLA
>NZ_LR698961.1|WP_002955693.1|1891823_1892969_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MSELKDVSLYFANGLSLKAKSFGAEGTFVGEVVFNTSMTGYQEIITDPSYAGQFVIFSMPEIGIVGVNEYDNESKSASCVGMIVSSYNDYVSNFRAQGSLADFLKSRNIMGICNVDTRGLIKLLTKQGAMNMIASTQMSQIDELREALESVPNISQINFIEQVSTKTPYTHTDSVFDFASFAYVKPKEPKAKVIAIDFGAKANILNELTSVGLEVEVMPHTFKADEIVARFQKDEIQGVFLSNGPGDPLVLCNEVEQIKLLIEANIPIFGICLGHQLLSIAHGYPTHKLKFGHHGGNHPIKNLQSGAVEITAQNHNYCVPESISEIATITHRNLFDNTIEGVRYKNKPIFSVQHHPEASPGPKEARILFQDFATLCLKPQS
>NZ_LR698961.1|WP_002955694.1|1892965_1893517_-|DUF507-family-protein
MRLKLQHAPYIANKISIDLGNSPHIKPLAPIANIAQVALECLQENIQKELAIDEKVREILEERSDEIEDFHMDERELFRMCKRQVAKERNFYLSWEDRCSDVSHKILSTLESKGLIAFSVSETIIKNIIFKAINDYSRIYDKAEDAVFERLKKYKRKLTYGTEEYEIVFSKLYEEELRKKGLL
>NZ_LR698961.1|WP_015453823.1|1893580_1895593_-|PBP1A-family-penicillin-binding-protein
MWRRVRVGVFVVSIVLGVGIGAYLIKLFYEVETEVSKIKEYRFALASQIVDRKDRLIANIFTDENFRFYATFDEIPPRVIESLLAVEDTLFFEHIGINPDAISRAMLKNIKSMRYVEGGSTLTQQLIKNIALSPEKTLKRKLTEAMLAIHIERHLSKEKILELYLNRISFGHGYHGIKTAALGYFHKTLHELSLKEICMLVGLPKAPSFYDPTKNKDYSMSRANDIIDRLYDIGWISKEEHDNAINEVPDVYNETLTQNVAPYVVDEVLRELGHIEDLKTGGYYIKLKVDLDYQLAAQEAVAYGYEEINKRLRERYPKIYNDETMDENDTLNGAMVVTDTHTGDILAMVGGVNYAKQKFNRATQAKRQIGSSVKPFIYQAAFDKGDSPATFIPDVPRKFATKGAAEAAAEGTKETESEEWRPSNYSSKFNGFMTLKDALRTSSNLATINLVDQNLGFGKLYQALKRDGFDDLPENMSIVLGSFELSLVEVAEQYSMFSNYGTILKPTLIESVINKSGESIYSSPTQSRHITTAQQAFLTIDILRDVVNRGTGFRARIKGIEVAGKTGTSNRNIDGWFCGFTPDVQAIVWYGRDDNTPIGPTESGGIVSPPAFAYFFSKVLTFDPGISRKFKVPEGVKLKTLDYGDFYYTENSPLPSKKPMAVDIEEELLF
>NZ_LR698961.1|WP_002955696.1|1895626_1897009_-|CZB-domain-containing-protein
MFGSSKALQRQIMEKDAHIAHLTKKLEVYETLVGFSQVEAIIGLKGGEIIYQNDVAKKLERMECLIPQLNESVSSVSCVRHDYSVVSTRVEDVVYYSIVPLDHLTNNTTGTNLFEVYTKSLKTGVTETQTSLQNVLTESNGVAEYSIKAVESAEDGLGMSTQALDQIEILYEKMQVASGLVDSLTQRSNEITSVISLIDDIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRKLAEKTQKATKEIAVVVKSMQQEANDIQTSTEETNEATSNVREGIMKLHGIVNNLKLDSLITKHSTFNLSNRIFCVLAKLDHIVFKNNLYSYIFGLADSFNCVDHHNCRLGKWYFEGEGKAVFANTQGYKALDAFHMGVHTEAITLAQTFADEKQSCPKKLIDTKILAMEQSSDGVMKAIVDMYNEKREEVLGDIKRLESEMIQAERHRAALSGTESSVEPQAQEA
>NZ_LR698961.1|WP_002955698.1|1897285_1897741_+|transcriptional-repressor
MNANHRVETLDSILERLRSSIKKNGLKNSKQREEIISVLYKSGTHLSPEEITNIIKTTDKNASISSVYRILSFLEKENFITALEADKSGRRYEIAAKEHHDHIICLTCGDIVEFVDDEIERLQLDIAKQFGAKLISHDMRLFVKCSKCQGL
>NZ_LR698961.1|WP_015453824.1|1898683_1900537_+|relaxase/mobilization-nuclease-domain-containing-protein
MADEFQRVMLELPPEYPYKESKLFEYVSFRRARKTREIYRSKVKSFFVANIRQGKPLFSSQSTSAFAKKNVVIKNISNMKKAHLKNALEYTISHSDSQVGIDYLGEFVNVNDIMRDWEQDFSSNPNTNEALHLVFSLNESHSQSVLETLTESARQTMQSYFPTYKWVMIPHSHQNKPHIHIILNKTDIFTKKKLHFGNKNDIAQFYEELREDFKYNLFTYSRGKLDYVNEVKFDKRFRQDMLDSKIDTLEKLQAIKDSNKELDFMANYKRAIFDFSNRHKGYSQKLNAVTKSLKNKSIYLGHIERKIESLMLQNINPTLLHQKQQLLQAQILEDTKEQERLKKALADLDSALRHFLDWEANFNTFSKNFQEKEKQKAFVKSFVGYEKYLSVELSQKLRDTQKAIAKSENSLKNKFSNVNEVVIKGLSNFNEKSNVFKLSSSYSKLIFYKGIVSSIDFSDNQSLRDKKQKSIDDLAMLEKQIIELMRIHLQKLPKQIEDSLSALESLKQDRTLDSMSFARAAVRLNKKINFYESSLKAIMRFQKRYGIELVSSATISEKQNVARAKEQIQTKTSQEHIKPTNNALTQDSNQAIKQDKQGASKGIDKDVSHTKKSPLSL
>NZ_LR698961.1|WP_002955702.1|1900546_1900915_-|hypothetical-protein
MKYNRKNKLEQISQLENNQEAQAMTTNTQDNDFKSSFTNSAPTKTQPQIEQKVEQKQSGKKRIFTFSINEELMGEIDEFLNEFGERGESKSSFTEEALRAYLAVKKANIKDRLLDKIKKLNS
>NZ_LR698961.1|WP_002955703.1|1900911_1901760_-|Fic-family-protein
MIAYNTKFLEIKSFISTEQNAFLQSLTQGICMQELLESMRDEKSIMHKLCFDFIYTSAVIEGNTYTRGEAQTLFETRKPISSKSIDEANMLLNIKSALEYVLEQKSPITKHSIREIHQILSQGLLPKKAQGGVRDVAVTIGNSDYIPLHNPQELEMQMDKMLQCYTQIHNPFDKAIYIHNNIAYLQYFQDCNKRLARTLQNLSLLNDGLPFISFNASRAETEIKAQYKDCMLCYYEKGETKPYVDFFVAEYTKTLENIHAIQNIHKQTLPKTNKPKHKGKTR
>NZ_LR698961.1|WP_002955704.1|1901746_1902439_-|AAA-family-ATPase
MIITIANQKGGSGKSTIAINAATKLLEQSQKVLLLDTDSQKNCEGFTNIRESQEKQDLNLPYFTLSNRSGDITQSLKQSVELYEYIVIDTKGSDCVECRKAMLYADKLVIPTTPSQLDFDVLCEFVERVKEVKDFNSNLEVYVVINKVSPNPFLTKELEDFKEALLDLCKESSLDDIHICENIIYDRIAYKRAISEGLGINEYNDEKAKSGFEAMFKEVLDTSGEKNDSL

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LR698961_1	1.2|149013|38|NZ_LR698961|PILER-CR	149013-149050	38	NZ_LR698961.1	544867-544904	0	1.0
NZ_LR698961_2	2.23|1363997|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363997-1364026	30	NZ_LR698961.1	1159897-1159926	0	1.0
NZ_LR698961_2	2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364195-1364225	31	NZ_LR698961.1	294991-295021	0	1.0
NZ_LR698961_2	2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364262-1364292	31	NZ_LR698961.1	294991-295021	0	1.0
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NZ_LR698961.1	243118-243147	0	1.0
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_LR698961.1	98863-98891	0	1.0
NZ_LR698961_3	3.3|1890031|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1890031-1890059	29	NZ_LR698961.1	968268-968296	0	1.0
NZ_LR698961_3	3.4|1890097|29|NZ_LR698961|CRISPRCasFinder	1890097-1890125	29	NZ_LR698961.1	968268-968296	0	1.0
NZ_LR698961_2	2.25|1364129|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364129-1364158	30	NZ_LR698961.1	1376799-1376828	1	0.967

1. spacer 1.2|149013|38|NZ_LR698961|PILER-CR matches to position: 544867-544904, mismatch: 0, identity: 1.0

ctactattaattatttttgatagatacaaactcccata	CRISPR spacer
ctactattaattatttttgatagatacaaactcccata	Protospacer
**************************************

2. spacer 2.23|1363997|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to position: 1159897-1159926, mismatch: 0, identity: 1.0

gattctaggtgtggaatgtgtgagtgtatc	CRISPR spacer
gattctaggtgtggaatgtgtgagtgtatc	Protospacer
******************************

3. spacer 2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to position: 294991-295021, mismatch: 0, identity: 1.0

ataatttagattctcctttttgaaattttta	CRISPR spacer
ataatttagattctcctttttgaaattttta	Protospacer
*******************************

4. spacer 2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to position: 294991-295021, mismatch: 0, identity: 1.0

ataatttagattctcctttttgaaattttta	CRISPR spacer
ataatttagattctcctttttgaaattttta	Protospacer
*******************************

5. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to position: 243118-243147, mismatch: 0, identity: 1.0

agtaattctatatttcaaataaagttttaa	CRISPR spacer
agtaattctatatttcaaataaagttttaa	Protospacer
******************************

6. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to position: 98863-98891, mismatch: 0, identity: 1.0

tgatttgattatcgcgttaatactttttg	CRISPR spacer
tgatttgattatcgcgttaatactttttg	Protospacer
*****************************

7. spacer 3.3|1890031|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to position: 968268-968296, mismatch: 0, identity: 1.0

actgctaaacgcataggtgttcagctcta	CRISPR spacer
actgctaaacgcataggtgttcagctcta	Protospacer
*****************************

8. spacer 3.4|1890097|29|NZ_LR698961|CRISPRCasFinder matches to position: 968268-968296, mismatch: 0, identity: 1.0

actgctaaacgcataggtgttcagctcta	CRISPR spacer
actgctaaacgcataggtgttcagctcta	Protospacer
*****************************

9. spacer 2.25|1364129|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to position: 1376799-1376828, mismatch: 1, identity: 0.967

ttttgatttgcttttgtcgataacttcatc	CRISPR spacer
ttttgatttgcttttgtcgatagcttcatc	Protospacer
**********************.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR698961_2	2.4|1362739|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362739-1362768	30	MH616900	Microviridae sp. isolate ctfb10, complete genome	1462-1491	3	0.9
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	MH622915	Microviridae sp. isolate ctbb557, complete genome	4540-4569	4	0.867
NZ_LR698961_2	2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT	1362607-1362636	30	MK249222	Blackfly microvirus SF02 isolate 181, complete genome	181-210	6	0.8
NZ_LR698961_2	2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT	1362607-1362636	30	MH572411	Microviridae sp. isolate SD_SF_33, complete genome	142-171	6	0.8
NZ_LR698961_2	2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT	1362607-1362636	30	MH992219	Apis mellifera associated microvirus 46 isolate INH_SP_298, complete genome	1086-1115	6	0.8
NZ_LR698961_2	2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT	1362607-1362636	30	MG945846	UNVERIFIED: Microviridae sp. isolate 5178-1502, complete genome	1345-1374	6	0.8
NZ_LR698961_2	2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363335-1363364	30	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	29342-29371	6	0.8
NZ_LR698961_2	2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363335-1363364	30	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	116884-116913	6	0.8
NZ_LR698961_2	2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363335-1363364	30	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	30827-30856	6	0.8
NZ_LR698961_2	2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363335-1363364	30	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	29972-30001	6	0.8
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	36902-36930	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	17713-17741	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_KU980950	Escherichia coli strain WE-0250 plasmid U2501, complete sequence	88497-88525	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	42652-42680	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	83121-83149	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP009051	Escherichia coli NCCP15648 plasmid p15648-1, complete sequence	17917-17945	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP039843	Escherichia coli O157:H7 strain USDA5905 plasmid pUSDA5905_1	86275-86303	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	13959-13987	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_AP018809	Escherichia coli strain E2865 plasmid pE2865-1, complete sequence	19082-19110	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	42895-42923	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	92732-92760	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	92830-92858	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP030784	Escherichia albertii strain 2012EL-1823B plasmid unnamed1, complete sequence	64488-64516	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	27696-27724	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	93635-93663	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP028125	Escherichia coli O26 str. RM10386 plasmid pRM10386-1, complete sequence	65813-65841	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP037905	Escherichia coli strain LHM10-1 plasmid unnamed2, complete sequence	39371-39399	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	17763-17791	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	MH422554	Escherichia phage P1, complete genome	16121-16149	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	116994-117022	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_LT905089	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, plasmid: 1	25019-25047	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP026725	Escherichia coli strain 266917_2 plasmid p266917_2_02, complete sequence	40711-40739	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP022733	Escherichia coli strain SA186 plasmid pSA186_4, complete sequence	32995-33023	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP009168	Escherichia coli 1303 plasmid p1303_95, complete sequence	38222-38250	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP013030	Escherichia coli strain 2012C-4227 plasmid unnamed2, complete sequence	25771-25799	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	86473-86501	6	0.793
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	15305-15333	6	0.793
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	32282-32311	7	0.767
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP043961	Streptomyces tendae strain 139 plasmid unnamed2, complete sequence	7594-7623	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MH319754	Marine virus AG-345-L05 Ga0172272_11 genomic sequence	95237-95266	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	38825-38854	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MK562502	Shigella phage KPS64, complete genome	38525-38554	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MF158043	Shigella phage Sf16, complete genome	42602-42631	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MF158044	Shigella phage Sf18, complete genome	2902-2931	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MF158041	Shigella phage Sf15, complete genome	45907-45936	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MN342151	Escherichia phage vB_EcoM_3HA14, complete genome	36612-36641	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MF327003	Shigella phage Sf14, complete genome	40248-40277	7	0.767
NZ_LR698961_2	2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363136-1363165	30	MF327005	Shigella phage Sf19, complete genome	40306-40335	7	0.767
NZ_LR698961_2	2.12|1363269|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363269-1363298	30	MH595538	Vibrio phage BONAISHI, complete genome	252115-252144	7	0.767
NZ_LR698961_2	2.12|1363269|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363269-1363298	30	NZ_CP015865	Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T plasmid unnamed, complete sequence	172-201	7	0.767
NZ_LR698961_2	2.12|1363269|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363269-1363298	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	535161-535190	7	0.767
NZ_LR698961_2	2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364195-1364225	31	MK577502	Aeromonas phage Asfd_1, partial genome	104954-104984	7	0.774
NZ_LR698961_2	2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364195-1364225	31	MN871507	UNVERIFIED: Aeromonas phage asfd_1h, complete genome	53757-53787	7	0.774
NZ_LR698961_2	2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364262-1364292	31	MK577502	Aeromonas phage Asfd_1, partial genome	104954-104984	7	0.774
NZ_LR698961_2	2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364262-1364292	31	MN871507	UNVERIFIED: Aeromonas phage asfd_1h, complete genome	53757-53787	7	0.774
NZ_LR698961_2	2.29|1364395|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364395-1364424	30	NZ_CP018869	Sporosarcina sp. P37 plasmid pSporoP37, complete sequence	59300-59329	7	0.767
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NZ_CP021154	Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-2, complete sequence	65653-65682	7	0.767
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NZ_CP044508	Chryseobacterium sp. strain SNU WT7 plasmid unnamed1, complete sequence	61277-61306	7	0.767
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NZ_CP035460	Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-2, complete sequence	69062-69091	7	0.767
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	299774-299803	7	0.767
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	MK554696	Fusobacterium phage Fnu1, complete genome	42372-42401	7	0.767
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	MH572431	Microviridae sp. isolate SD_MC_44, complete genome	2933-2962	7	0.767
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	629643-629672	8	0.733
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	133409-133438	8	0.733
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	283076-283105	8	0.733
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	313436-313465	8	0.733
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	445120-445149	8	0.733
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	597673-597702	8	0.733
NZ_LR698961_2	2.4|1362739|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362739-1362768	30	NZ_CP014285	Bacillus thuringiensis strain Bt185 plasmid pBT1850055, complete sequence	21936-21965	8	0.733
NZ_LR698961_2	2.4|1362739|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362739-1362768	30	NZ_CP032612	Bacillus thuringiensis strain QZL38 plasmid p.4, complete sequence	39874-39903	8	0.733
NZ_LR698961_2	2.9|1363070|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363070-1363099	30	MK448939	Streptococcus phage Javan440, complete genome	33331-33360	8	0.733
NZ_LR698961_2	2.9|1363070|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363070-1363099	30	MK448758	Streptococcus phage Javan433, complete genome	33331-33360	8	0.733
NZ_LR698961_2	2.9|1363070|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363070-1363099	30	MK448759	Streptococcus phage Javan439, complete genome	33331-33360	8	0.733
NZ_LR698961_2	2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363468-1363497	30	AF189021	Roseophage SIO1 complete genome	1048-1077	8	0.733
NZ_LR698961_2	2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363468-1363497	30	AF189021	Roseophage SIO1 complete genome	3587-3616	8	0.733
NZ_LR698961_2	2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363468-1363497	30	FJ867910	Roseobacter phage SIO1 genomic sequence	808-837	8	0.733
NZ_LR698961_2	2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363468-1363497	30	FJ867910	Roseobacter phage SIO1 genomic sequence	3345-3374	8	0.733
NZ_LR698961_2	2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363666-1363695	30	MT074137	Bacteroides phage DAC16, complete genome	9550-9579	8	0.733
NZ_LR698961_2	2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363666-1363695	30	MT074141	Bacteroides phage DAC22, complete genome	11094-11123	8	0.733
NZ_LR698961_2	2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363666-1363695	30	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	33601-33630	8	0.733
NZ_LR698961_2	2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363666-1363695	30	NC_014155	Thiomonas intermedia K12 plasmid pTINT02, complete sequence	18494-18523	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MN693371	Marine virus AFVG_25M511, complete genome	36486-36515	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MN693237	Marine virus AFVG_25M495, complete genome	36455-36484	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MN693150	Marine virus AFVG_25M172, complete genome	445-474	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MN693432	Marine virus AFVG_25M4, complete genome	36341-36370	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MN693485	Marine virus AFVG_25M173, complete genome	446-475	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	NZ_CP021671	Bacillus licheniformis strain SRCM100141 plasmid pBL141-1 sequence sequence	30811-30840	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	NC_012797	Desulfovibrio magneticus RS-1 plasmid pDMC1, complete sequence	16590-16619	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MK288022	Bacillus phage pW4, complete genome	2735-2764	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MN732896	Elizabethkingia phage TCUEAP1, complete genome	16554-16583	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	98298-98327	8	0.733
NZ_LR698961_2	2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363732-1363761	30	KT070866	Bacillus phage PBC4, complete genome	72941-72970	8	0.733
NZ_LR698961_2	2.20|1363798|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363798-1363828	31	MN694530	Marine virus AFVG_250M438, complete genome	11672-11702	8	0.742
NZ_LR698961_2	2.20|1363798|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363798-1363828	31	MN694240	Marine virus AFVG_250M436, complete genome	12186-12216	8	0.742
NZ_LR698961_2	2.20|1363798|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363798-1363828	31	MN694170	Marine virus AFVG_250M437, complete genome	26978-27008	8	0.742
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	NZ_CP019231	Bacillus thuringiensis strain YGd22-03 plasmid pYGD30, complete sequence	4404-4433	8	0.733
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	MT080590	UNVERIFIED: Staphylococcus phage vB_SauM_EW27, complete genome	122101-122130	8	0.733
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	KX532239	Staphylococcus phage StAP1, complete genome	29812-29841	8	0.733
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	JX194239	Staphylococcus phage SA11, complete genome	106440-106469	8	0.733
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	MT080584	UNVERIFIED: Staphylococcus phage vB_SauM_EW15, complete genome	13771-13800	8	0.733
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	MT080587	UNVERIFIED: Staphylococcus phage vB_SauM_EW20, complete genome	50045-50074	8	0.733
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	KP881332	Staphylococcus phage Stau2, complete genome	22060-22089	8	0.733
NZ_LR698961_2	2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363931-1363960	30	MT080588	UNVERIFIED: Staphylococcus phage vB_SauM_EW22, complete genome	26268-26297	8	0.733
NZ_LR698961_2	2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364195-1364225	31	NZ_CP012258	Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence	24320-24350	8	0.742
NZ_LR698961_2	2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364262-1364292	31	NZ_CP012258	Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence	24320-24350	8	0.742
NZ_LR698961_2	2.30|1364461|30|NZ_LR698961|CRISPRCasFinder,CRT	1364461-1364490	30	NZ_MF477836	Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence	10976-11005	8	0.733
NZ_LR698961_2	2.30|1364461|30|NZ_LR698961|CRISPRCasFinder,CRT	1364461-1364490	30	HQ670749	Cellulophaga phage phi47:1, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces	53061-53090	8	0.733
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	MN693569	Marine virus AFVG_25M84, complete genome	44178-44207	8	0.733
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	AP014316	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C31, *** SEQUENCING IN PROGRESS ***	24269-24298	8	0.733
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	MH598806	Pelagibacter phage HTVC119P, complete genome	7001-7030	8	0.733
NZ_LR698961_3	3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder	1889965-1889993	29	NZ_CP018030	Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence	96753-96781	8	0.724
NZ_LR698961_2	2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1362673-1362702	30	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	896956-896985	9	0.7
NZ_LR698961_2	2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363468-1363497	30	KY783914	Mycobacterium phage GardenSalsa, complete genome	26987-27016	9	0.7
NZ_LR698961_2	2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363468-1363497	30	KY223999	Mycobacterium phage MrMagoo, complete genome	26987-27016	9	0.7
NZ_LR698961_2	2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363666-1363695	30	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	764-793	9	0.7
NZ_LR698961_2	2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364195-1364225	31	NZ_CP015795	Borrelia mayonii strain MN14-1420 plasmid lp54, complete sequence	28444-28474	9	0.71
NZ_LR698961_2	2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364262-1364292	31	NZ_CP015795	Borrelia mayonii strain MN14-1420 plasmid lp54, complete sequence	28444-28474	9	0.71
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NC_019011	Staphylococcus aureus plasmid pWBG764, complete sequence	1802-1831	9	0.7
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NC_013346	Staphylococcus aureus plasmid SAP087A, complete sequence	934-963	9	0.7
NZ_LR698961_1	1.1|148963|32|NZ_LR698961|PILER-CR	148963-148994	32	NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	386096-386127	10	0.688
NZ_LR698961_1	1.1|148963|32|NZ_LR698961|PILER-CR	148963-148994	32	HG531805	Clostridium phage CDMH1 complete genome	38487-38518	10	0.688
NZ_LR698961_2	2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364195-1364225	31	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	229258-229288	10	0.677
NZ_LR698961_2	2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1364262-1364292	31	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	229258-229288	10	0.677
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	NZ_CP039267	Lactobacillus crispatus strain DC21.1 plasmid pLcDC21.1_1, complete sequence	103-132	10	0.667
NZ_LR698961_2	2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT	1364527-1364556	30	JQ680369	Unidentified phage clone 2204_scaffold211 genomic sequence	12504-12533	10	0.667
NZ_LR698961_2	2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR	1363666-1363695	30	NZ_CP031120	Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p3_000369, complete sequence	1940-1969	11	0.633

1. spacer 2.4|1362739|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MH616900 (Microviridae sp. isolate ctfb10, complete genome) position: , mismatch: 3, identity: 0.9

tttgttgtcttttgtagcataaagctcttg	CRISPR spacer
tttgttgtctttagtagcgtaaagctcttt	Protospacer
************ *****.********** 

2. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MH622915 (Microviridae sp. isolate ctbb557, complete genome) position: , mismatch: 4, identity: 0.867

aaaagaaaaacgacgccttcgg--cggcgata	CRISPR spacer
aaaagaaaaacaacgccttcggtctggcga--	Protospacer
***********.**********  .*****  

3. spacer 2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MK249222 (Blackfly microvirus SF02 isolate 181, complete genome) position: , mismatch: 6, identity: 0.8

taaaagacgataagggacgaaccaatgatg	CRISPR spacer
ggtcagacgattaggaacgaaccaatgatg	Protospacer
 .  ******* ***.**************

4. spacer 2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MH572411 (Microviridae sp. isolate SD_SF_33, complete genome) position: , mismatch: 6, identity: 0.8

taaaagacgataagggacgaaccaatgatg	CRISPR spacer
caatatgcggtaggggacgaaccaatgatg	Protospacer
.** * .**.**.*****************

5. spacer 2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MH992219 (Apis mellifera associated microvirus 46 isolate INH_SP_298, complete genome) position: , mismatch: 6, identity: 0.8

taaaagacgataagggacgaaccaatgatg	CRISPR spacer
gataatgcgatgaggaacgaaccaatgatg	Protospacer
 * ** .****.***.**************

6. spacer 2.2|1362607|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MG945846 (UNVERIFIED: Microviridae sp. isolate 5178-1502, complete genome) position: , mismatch: 6, identity: 0.8

taaaagacgataagggacgaaccaatgatg	CRISPR spacer
tattaagcgataaggaacaaaccaatgatg	Protospacer
**  *..********.**.***********

7. spacer 2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tccttttgataagcattatagtaactttgt	CRISPR spacer
tatttcttttaagcattatattaactttgt	Protospacer
* .**.*  *********** *********

8. spacer 2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

tccttttgataagcattatagtaactttgt	CRISPR spacer
tatttcttttaagcattatattaactttgt	Protospacer
* .**.*  *********** *********

9. spacer 2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

tccttttgataagcattatagtaactttgt	CRISPR spacer
tatttcttttaagcattatattaactttgt	Protospacer
* .**.*  *********** *********

10. spacer 2.13|1363335|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

tccttttgataagcattatagtaactttgt	CRISPR spacer
tatttcttttaagcattatattaactttgt	Protospacer
* .**.*  *********** *********

11. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

12. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

13. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_KU980950 (Escherichia coli strain WE-0250 plasmid U2501, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

14. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

15. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

16. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP009051 (Escherichia coli NCCP15648 plasmid p15648-1, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

17. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP039843 (Escherichia coli O157:H7 strain USDA5905 plasmid pUSDA5905_1) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

18. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

19. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_AP018809 (Escherichia coli strain E2865 plasmid pE2865-1, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

20. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

21. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

22. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

23. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP030784 (Escherichia albertii strain 2012EL-1823B plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

24. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

25. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

26. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP028125 (Escherichia coli O26 str. RM10386 plasmid pRM10386-1, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

27. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP037905 (Escherichia coli strain LHM10-1 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

28. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

29. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

30. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

31. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_LT905089 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, plasmid: 1) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

32. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP026725 (Escherichia coli strain 266917_2 plasmid p266917_2_02, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

33. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP022733 (Escherichia coli strain SA186 plasmid pSA186_4, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

34. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP009168 (Escherichia coli 1303 plasmid p1303_95, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

35. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP013030 (Escherichia coli strain 2012C-4227 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

36. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

37. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 6, identity: 0.793

tgatttgattatcgcgttaatactttttg	CRISPR spacer
ggtgttctttatcgcgttaataatttttg	Protospacer
 *  **  ************** ******

38. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.767

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
cgaaggaaagcgacgccttcggcggccttg	Protospacer
 .***.***.****************  *.

39. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043961 (Streptomyces tendae strain 139 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
caagcaaaaacgacgcctccggcggcgcct	Protospacer
 **. *************.******** . 

40. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MH319754 (Marine virus AG-345-L05 Ga0172272_11 genomic sequence) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
agaggatttatttgagactctttgttttcg	Protospacer
**************** *****  *..*  

41. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
tgaccatttttttgagactcttgctcctca	Protospacer
 **  **** ****** ***********  

42. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MK562502 (Shigella phage KPS64, complete genome) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
caaagcattatttgagtctcttgcttcaat	Protospacer
 .*.*  ******************.* **

43. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MF158043 (Shigella phage Sf16, complete genome) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
caaagcattatttgagtctcttgcttcaat	Protospacer
 .*.*  ******************.* **

44. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MF158044 (Shigella phage Sf18, complete genome) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
caaagcattatttgagtctcttgcttcaat	Protospacer
 .*.*  ******************.* **

45. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MF158041 (Shigella phage Sf15, complete genome) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
caaagcattatttgagtctcttgcttcaat	Protospacer
 .*.*  ******************.* **

46. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN342151 (Escherichia phage vB_EcoM_3HA14, complete genome) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
caaagcattatttgagtctcttgcttcaat	Protospacer
 .*.*  ******************.* **

47. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MF327003 (Shigella phage Sf14, complete genome) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
caaagcattatttgagtctcttgcttcaat	Protospacer
 .*.*  ******************.* **

48. spacer 2.10|1363136|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MF327005 (Shigella phage Sf19, complete genome) position: , mismatch: 7, identity: 0.767

agaggatttatttgagtctcttgctcctat	CRISPR spacer
caaagcattatttgagtctcttgcttcaat	Protospacer
 .*.*  ******************.* **

49. spacer 2.12|1363269|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MH595538 (Vibrio phage BONAISHI, complete genome) position: , mismatch: 7, identity: 0.767

ctaagctttaatgtgccatcagaatgattt	CRISPR spacer
ttatgctttaatgcgccatcagaataagaa	Protospacer
.** *********.***********.*   

50. spacer 2.12|1363269|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015865 (Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

---ctaagctttaatgtgccatcagaatgattt	CRISPR spacer
agatcaa---ttattgtgccatcagaattattt	Protospacer
   ..**   *** ************** ****

51. spacer 2.12|1363269|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

ctaagctttaatgtgccatcagaatgattt	CRISPR spacer
ttaagctttaatccgccatcagaagagtgt	Protospacer
.*********** .********** ..* *

52. spacer 2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MK577502 (Aeromonas phage Asfd_1, partial genome) position: , mismatch: 7, identity: 0.774

-ataatttagattctcctttttgaaattttta	CRISPR spacer
tacaa-atagaatatcctttttgaaattttct	Protospacer
 *.**  **** * ****************. 

53. spacer 2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN871507 (UNVERIFIED: Aeromonas phage asfd_1h, complete genome) position: , mismatch: 7, identity: 0.774

-ataatttagattctcctttttgaaattttta	CRISPR spacer
tacaa-atagaatatcctttttgaaattttct	Protospacer
 *.**  **** * ****************. 

54. spacer 2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MK577502 (Aeromonas phage Asfd_1, partial genome) position: , mismatch: 7, identity: 0.774

-ataatttagattctcctttttgaaattttta	CRISPR spacer
tacaa-atagaatatcctttttgaaattttct	Protospacer
 *.**  **** * ****************. 

55. spacer 2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN871507 (UNVERIFIED: Aeromonas phage asfd_1h, complete genome) position: , mismatch: 7, identity: 0.774

-ataatttagattctcctttttgaaattttta	CRISPR spacer
tacaa-atagaatatcctttttgaaattttct	Protospacer
 *.**  **** * ****************. 

56. spacer 2.29|1364395|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018869 (Sporosarcina sp. P37 plasmid pSporoP37, complete sequence) position: , mismatch: 7, identity: 0.767

ggagcggtgattggagcaagtatgctaagc	CRISPR spacer
ataacattgattggagcaagtatgatcagc	Protospacer
. *.*. ***************** * ***

57. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NZ_CP021154 (Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-2, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattctatatttcaaataaagttttaa	CRISPR spacer
gttaattctttatttcaaataaaaagttta	Protospacer
. ******* *************.  ** *

58. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NZ_CP044508 (Chryseobacterium sp. strain SNU WT7 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattctatatttcaaataaagttttaa	CRISPR spacer
caaaattctctatttcatataaagttagaa	Protospacer
 . ****** ******* ********  **

59. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NZ_CP035460 (Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-2, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattctatatttcaaataaagttttaa	CRISPR spacer
gttaattctttatttcaaataaaaagttta	Protospacer
. ******* *************.  ** *

60. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattctatatttcaaataaagttttaa	CRISPR spacer
tttcattcaatatttcaaataatgtttgat	Protospacer
  * **** ************* **** * 

61. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 7, identity: 0.767

agtaattctatatttcaaataaagttttaa	CRISPR spacer
aatttatctatatttcaattaaatttttat	Protospacer
*.*   ************ **** ***** 

62. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MH572431 (Microviridae sp. isolate SD_MC_44, complete genome) position: , mismatch: 7, identity: 0.767

agtaattctatatttcaaataaagttttaa	CRISPR spacer
agtaattctatatttcaactactcttcaac	Protospacer
****************** **   **. * 

63. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
cgaaggaaagcgacgccttcggcggcctgg	Protospacer
 .***.***.****************   .

64. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
cgaaggaaagcgacgccttcggcggcttgg	Protospacer
 .***.***.****************   .

65. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
cgaaggaaagcgacgccttcggcggcctgg	Protospacer
 .***.***.****************   .

66. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
cgaaggaaagcgacgccttcggcggcctcg	Protospacer
 .***.***.****************  ..

67. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
cgaaggaaagcgacgccttcggcggcctgg	Protospacer
 .***.***.****************   .

68. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
cgaaggaaagcgacgccttcggcggcctgg	Protospacer
 .***.***.****************   .

69. spacer 2.4|1362739|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014285 (Bacillus thuringiensis strain Bt185 plasmid pBT1850055, complete sequence) position: , mismatch: 8, identity: 0.733

tttgttgtcttttgtagcataaagctcttg	CRISPR spacer
gttgctgtcttttttagcataaaggcacta	Protospacer
 ***.******** ********** . .*.

70. spacer 2.4|1362739|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032612 (Bacillus thuringiensis strain QZL38 plasmid p.4, complete sequence) position: , mismatch: 8, identity: 0.733

tttgttgtcttttgtagcataaagctcttg	CRISPR spacer
gttgctgtcttttttagcataaaggcacta	Protospacer
 ***.******** ********** . .*.

71. spacer 2.9|1363070|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MK448939 (Streptococcus phage Javan440, complete genome) position: , mismatch: 8, identity: 0.733

aaaatcattacgagtagaattctcaaatag	CRISPR spacer
tggaaaattacgagaagaattttcaaatat	Protospacer
 ..*  ******** ******.******* 

72. spacer 2.9|1363070|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MK448758 (Streptococcus phage Javan433, complete genome) position: , mismatch: 8, identity: 0.733

aaaatcattacgagtagaattctcaaatag	CRISPR spacer
tggaaaattacgagaagaattttcaaatat	Protospacer
 ..*  ******** ******.******* 

73. spacer 2.9|1363070|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MK448759 (Streptococcus phage Javan439, complete genome) position: , mismatch: 8, identity: 0.733

aaaatcattacgagtagaattctcaaatag	CRISPR spacer
tggaaaattacgagaagaattttcaaatat	Protospacer
 ..*  ******** ******.******* 

74. spacer 2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to AF189021 (Roseophage SIO1 complete genome) position: , mismatch: 8, identity: 0.733

attgtcaatgtccaagtcgtagtcgtacgt	CRISPR spacer
gcggtcaatgtccaagacgtagacgttgtt	Protospacer
.. ************* ***** ***   *

75. spacer 2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to AF189021 (Roseophage SIO1 complete genome) position: , mismatch: 8, identity: 0.733

attgtcaatgtccaagtcgtagtcgtacgt	CRISPR spacer
gcggtcaatgtccaagacgtagacgttgtt	Protospacer
.. ************* ***** ***   *

76. spacer 2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to FJ867910 (Roseobacter phage SIO1 genomic sequence) position: , mismatch: 8, identity: 0.733

attgtcaatgtccaagtcgtagtcgtacgt	CRISPR spacer
gcggtcaatgtccaagacgtagacgttgtt	Protospacer
.. ************* ***** ***   *

77. spacer 2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to FJ867910 (Roseobacter phage SIO1 genomic sequence) position: , mismatch: 8, identity: 0.733

attgtcaatgtccaagtcgtagtcgtacgt	CRISPR spacer
gcggtcaatgtccaagacgtagacgttgtt	Protospacer
.. ************* ***** ***   *

78. spacer 2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MT074137 (Bacteroides phage DAC16, complete genome) position: , mismatch: 8, identity: 0.733

gccgatttgtttttttgcaaaaagaacctc	CRISPR spacer
ttttcattctttttttgcaaaaagaacatc	Protospacer
 ..   ** ****************** **

79. spacer 2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 8, identity: 0.733

gccgatttgtttttttgcaaaaagaacctc	CRISPR spacer
ttttcattctttttttgcaaaaagaacatc	Protospacer
 ..   ** ****************** **

80. spacer 2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 8, identity: 0.733

gccgatttgtttttttgcaaaaagaacctc	CRISPR spacer
ggatgctttttattttgcaaaaagaacctg	Protospacer
*   ..** ** ***************** 

81. spacer 2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NC_014155 (Thiomonas intermedia K12 plasmid pTINT02, complete sequence) position: , mismatch: 8, identity: 0.733

gccgatttgtttttttgcaaaaagaacctc	CRISPR spacer
ccttttttgtttctttgcaaacagaaccaa	Protospacer
 *.  *******.******** ******  

82. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN693371 (Marine virus AFVG_25M511, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
gactttcaaagagttaatattgttttgagt	Protospacer
  .  *************.******** .*

83. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN693237 (Marine virus AFVG_25M495, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
gactttcaaagagttaatattgttttgagt	Protospacer
  .  *************.******** .*

84. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN693150 (Marine virus AFVG_25M172, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
gactttcaaagagttaatattgttttgagt	Protospacer
  .  *************.******** .*

85. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN693432 (Marine virus AFVG_25M4, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
gactttcaaagagttaatattgttttgagt	Protospacer
  .  *************.******** .*

86. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN693485 (Marine virus AFVG_25M173, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
gactttcaaagagttaatattgttttgagt	Protospacer
  .  *************.******** .*

87. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021671 (Bacillus licheniformis strain SRCM100141 plasmid pBL141-1 sequence sequence) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
tctgatgaaagagttaatgttataggggtg	Protospacer
****** **************.*   *   

88. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NC_012797 (Desulfovibrio magneticus RS-1 plasmid pDMC1, complete sequence) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
cttgatccaggagttaatgttgtttctttt	Protospacer
..***** *.***************. . *

89. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MK288022 (Bacillus phage pW4, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
gcagattaaagagttaatgttgttcttaga	Protospacer
 * ***.*****************.*  . 

90. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN732896 (Elizabethkingia phage TCUEAP1, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
aaaaatctaagagttaatgatgttttgaaa	Protospacer
   .*** *********** ******* * 

91. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
ggggtataaatagttaatgttgttttgaat	Protospacer
   *  .*** **************** **

92. spacer 2.19|1363732|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to KT070866 (Bacillus phage PBC4, complete genome) position: , mismatch: 8, identity: 0.733

tctgatcaaagagttaatgttgttttgcat	CRISPR spacer
gcagattaaagagttaatgttgttcttaga	Protospacer
 * ***.*****************.*  . 

93. spacer 2.20|1363798|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN694530 (Marine virus AFVG_250M438, complete genome) position: , mismatch: 8, identity: 0.742

agaagcaaggcggaggtcgcggatgtctaaa	CRISPR spacer
atcatggaggtggaggtcccggatgtctaac	Protospacer
*  *  .***.******* *********** 

94. spacer 2.20|1363798|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN694240 (Marine virus AFVG_250M436, complete genome) position: , mismatch: 8, identity: 0.742

agaagcaaggcggaggtcgcggatgtctaaa	CRISPR spacer
atcatggaggtggaggtcccggatgtctaac	Protospacer
*  *  .***.******* *********** 

95. spacer 2.20|1363798|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MN694170 (Marine virus AFVG_250M437, complete genome) position: , mismatch: 8, identity: 0.742

agaagcaaggcggaggtcgcggatgtctaaa	CRISPR spacer
atcatggaggtggaggtcccggatgtctaac	Protospacer
*  *  .***.******* *********** 

96. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019231 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD30, complete sequence) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
gaatggagaaacttctcattttcttgattc	Protospacer
.* ******* ***.***********.   

97. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MT080590 (UNVERIFIED: Staphylococcus phage vB_SauM_EW27, complete genome) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
ttttttctaaccttttcattttcttggaat	Protospacer
  **    **.****************** 

98. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to KX532239 (Staphylococcus phage StAP1, complete genome) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
ttttttctaaccttttcattttcttggaat	Protospacer
  **    **.****************** 

99. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to JX194239 (Staphylococcus phage SA11, complete genome) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
ttttttctaaccttttcattttcttggaat	Protospacer
  **    **.****************** 

100. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MT080584 (UNVERIFIED: Staphylococcus phage vB_SauM_EW15, complete genome) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
ttttttctaaccttttcattttcttggaat	Protospacer
  **    **.****************** 

101. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MT080587 (UNVERIFIED: Staphylococcus phage vB_SauM_EW20, complete genome) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
ttttttctaaccttttcattttcttggaat	Protospacer
  **    **.****************** 

102. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to KP881332 (Staphylococcus phage Stau2, complete genome) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
ttttttctaaccttttcattttcttggaat	Protospacer
  **    **.****************** 

103. spacer 2.22|1363931|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to MT080588 (UNVERIFIED: Staphylococcus phage vB_SauM_EW22, complete genome) position: , mismatch: 8, identity: 0.733

aattggagaatcttttcattttcttggaag	CRISPR spacer
ttttttctaaccttttcattttcttggaat	Protospacer
  **    **.****************** 

104. spacer 2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012258 (Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence) position: , mismatch: 8, identity: 0.742

ataatttagattctcctttttgaaattttta	CRISPR spacer
actatttaaaatctcctttttgaaatcaaaa	Protospacer
*. *****.* ***************.   *

105. spacer 2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012258 (Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence) position: , mismatch: 8, identity: 0.742

ataatttagattctcctttttgaaattttta	CRISPR spacer
actatttaaaatctcctttttgaaatcaaaa	Protospacer
*. *****.* ***************.   *

106. spacer 2.30|1364461|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NZ_MF477836 (Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagtcgt--tcgtagttttctttttctaat	CRISPR spacer
--ggtttattatcgtagctttctttttctaat	Protospacer
  .. *..*  ******.**************

107. spacer 2.30|1364461|30|NZ_LR698961|CRISPRCasFinder,CRT matches to HQ670749 (Cellulophaga phage phi47:1, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces) position: , mismatch: 8, identity: 0.733

aaaagtcgttcgtagttttctttttctaat	CRISPR spacer
tttttttgttcgttgttttgtttttctaat	Protospacer
     *.****** ***** **********

108. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MN693569 (Marine virus AFVG_25M84, complete genome) position: , mismatch: 8, identity: 0.733

agtaattctatatttcaaataaagttttaa	CRISPR spacer
atgctgtctctatttcaaataaagtttcta	Protospacer
*     *** *****************. *

109. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to AP014316 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C31, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

agtaattctatatttcaaataaagttttaa	CRISPR spacer
ctttcatctttattttaaataaagttttac	Protospacer
  *   *** *****.************* 

110. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to MH598806 (Pelagibacter phage HTVC119P, complete genome) position: , mismatch: 8, identity: 0.733

agtaattctatatttcaaataaagttttaa	CRISPR spacer
ctttcatctttattttaaataaagttttac	Protospacer
  *   *** *****.************* 

111. spacer 3.2|1889965|29|NZ_LR698961|PILER-CR,CRISPRCasFinder matches to NZ_CP018030 (Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence) position: , mismatch: 8, identity: 0.724

tgatttgattatcgcgttaatactttttg	CRISPR spacer
gaacagtattatcgcggtaatactttttt	Protospacer
 .*.   ********* *********** 

112. spacer 2.3|1362673|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

aaaagaaaaacgacgccttcggcggcgata	CRISPR spacer
tgatcgtcaacgacgtcttcggcggcgatc	Protospacer
 .*  .  *******.************* 

113. spacer 2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to KY783914 (Mycobacterium phage GardenSalsa, complete genome) position: , mismatch: 9, identity: 0.7

attgtcaatgtccaagtcgtagtcgtacgt	CRISPR spacer
gatgtaaatgtccaggtcgtagtcggtgag	Protospacer
. *** ********.**********   . 

114. spacer 2.15|1363468|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to KY223999 (Mycobacterium phage MrMagoo, complete genome) position: , mismatch: 9, identity: 0.7

attgtcaatgtccaagtcgtagtcgtacgt	CRISPR spacer
gatgtaaatgtccaggtcgtagtcggtgag	Protospacer
. *** ********.**********   . 

115. spacer 2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 9, identity: 0.7

gccgatttgtttttttgcaaaaagaacctc	CRISPR spacer
acttttttgattttttgcaaaaagaagacg	Protospacer
.*.  **** ****************  . 

116. spacer 2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015795 (Borrelia mayonii strain MN14-1420 plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.71

ataatttagattctcctttttgaaattttta	CRISPR spacer
ccattttaaattctccttttttaaattgcat	Protospacer
 .* ****.************ ***** .  

117. spacer 2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015795 (Borrelia mayonii strain MN14-1420 plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.71

ataatttagattctcctttttgaaattttta	CRISPR spacer
ccattttaaattctccttttttaaattgcat	Protospacer
 .* ****.************ ***** .  

118. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NC_019011 (Staphylococcus aureus plasmid pWBG764, complete sequence) position: , mismatch: 9, identity: 0.7

agtaattctatatttcaaataaagttttaa	CRISPR spacer
tataattctatatttcatataaatcctcct	Protospacer
 .*************** ***** ..*.  

119. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NC_013346 (Staphylococcus aureus plasmid SAP087A, complete sequence) position: , mismatch: 9, identity: 0.7

agtaattctatatttcaaataaagttttaa	CRISPR spacer
tataattctatatttcatataaatcctcct	Protospacer
 .*************** ***** ..*.  

120. spacer 1.1|148963|32|NZ_LR698961|PILER-CR matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 10, identity: 0.688

gccattgattgattctttggctcaaattcccc	CRISPR spacer
aacattgattgatgctttgcctcaagtggatg	Protospacer
. *********** ***** *****.*   . 

121. spacer 1.1|148963|32|NZ_LR698961|PILER-CR matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 10, identity: 0.688

gccattgattgattctttggctcaaattcccc	CRISPR spacer
ttttgcgattgattcttaggttcaaattcttc	Protospacer
 ..  .*********** **.********..*

122. spacer 2.26|1364195|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 10, identity: 0.677

ataatttagattctcctttttgaaattttta	CRISPR spacer
tctatttttattctcctttttgaaataaagt	Protospacer
 . ****  *****************     

123. spacer 2.27|1364262|31|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 10, identity: 0.677

ataatttagattctcctttttgaaattttta	CRISPR spacer
tctatttttattctcctttttgaaataaagt	Protospacer
 . ****  *****************     

124. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to NZ_CP039267 (Lactobacillus crispatus strain DC21.1 plasmid pLcDC21.1_1, complete sequence) position: , mismatch: 10, identity: 0.667

agtaattctatatttcaaataaagttttaa	CRISPR spacer
ttgcgccacatatttcaaatatagttttaa	Protospacer
    ... .************ ********

125. spacer 2.31|1364527|30|NZ_LR698961|CRISPRCasFinder,CRT matches to JQ680369 (Unidentified phage clone 2204_scaffold211 genomic sequence) position: , mismatch: 10, identity: 0.667

agtaattctatatttcaaataaagttttaa-----	CRISPR spacer
-acaaaactatatttcaaatatag----aaaacgg	Protospacer
 ..**  ************** **    **     

126. spacer 2.18|1363666|30|NZ_LR698961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031120 (Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p3_000369, complete sequence) position: , mismatch: 11, identity: 0.633

gccgatttgtttttttgcaaaaagaacctc----	CRISPR spacer
-ccagt---tttttttgcaaaaaaaaaaataaaa	Protospacer
 **..*   **************.**   .