CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR698995	Atopobiaceae bacterium isolate MGYG-HGUT-02405 chromosome 1	4 crisprs	Cas9_archaeal,DinG,WYL	0	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR698995_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR698995_1

457273-457364

Orphan

Consensus_repeat	Method
GGTCAAAAGGGGACAGTCCCCTTTTGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR698995_1

>merge|NZ_LR698995|1|457273-457364|CRISPRCasFinder
GGTCAAAAGGGGACAGTCCCCTTTTGACCGCCCTTTTGACCGATTCCGAGCGCGATCACATGGGTCAAAAGGGGACTGTCCCCTTTTGACCG

>NZ_LR698995|1|1|457273-457364|CRISPRCasFinder
GGTCAAAAGGGGACAGTCCCCTTTTGACCG	CCCTTTTGACCGATTCCGAGCGCGATCACATG
GGTCAAAAGGGGACTGTCCCCTTTTGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR698995.1\|WP_075576140.1\|460468_460750_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075576132.1\|447095_447719_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_LR698995.1\|WP_075577487.1\|464691_466107_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_LR698995.1\|WP_075576135.1\|451356_452691_+\|purine/pyrimidine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_LR698995.1\|WP_083551724.1\|449277_450177_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_LR698995.1\|WP_075576141.1\|461022_462825_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179385
NZ_LR698995.1\|WP_075576145.1\|467998_468316_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	unknown	unknown	gnl\|CDD\|379750
NZ_LR698995.1\|WP_075576142.1\|462793_463819_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_LR698995.1\|WP_075576131.1\|445313_446822_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_LR698995.1\|WP_075576144.1\|467710_467995_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_LR698995.1\|WP_075576137.1\|454271_457265_+\|putative-selenate-reductase-subunit-YgfK	unknown	unknown	gnl\|CDD\|236630
NZ_LR698995.1\|WP_075576130.1\|443811_445317_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_LR698995.1\|WP_075576136.1\|452779_454123_+\|putative-aminohydrolase-SsnA	unknown	unknown	gnl\|CDD\|235963
NZ_LR698995.1\|WP_075576129.1\|443494_443812_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_LR698995.1\|WP_147556133.1\|463944_464427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075576139.1\|457602_460359_+\|selenium-dependent-xanthine-dehydrogenase	unknown	unknown	gnl\|CDD\|132354
NZ_LR698995.1\|WP_075576133.1\|447711_449160_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LR698995.1\|WP_147556131.1\|457378_457591_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|235941
NZ_LR698995.1\|WP_075576134.1\|450399_451050_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|377981
NZ_LR698995.1\|WP_147556274.1\|466230_467571_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LR698995.1\|WP_075576132.1\|447095_447719_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.31588e-10
NZ_LR698995.1\|WP_075577487.1\|464691_466107_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	2.05163e-173
NZ_LR698995.1\|WP_075576135.1\|451356_452691_+\|purine/pyrimidine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.49504e-103
NZ_LR698995.1\|WP_083551724.1\|449277_450177_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	9.60242e-54
NZ_LR698995.1\|WP_075576141.1\|461022_462825_+\|hypothetical-protein	gnl\|CDD\|179385	PRK02224, PRK02224, DNA double-strand break repair Rad50 ATPase.	1.49924e-05
NZ_LR698995.1\|WP_075576142.1\|462793_463819_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.26067e-47
NZ_LR698995.1\|WP_075576131.1\|445313_446822_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_LR698995.1\|WP_075576144.1\|467710_467995_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.16728e-15
NZ_LR698995.1\|WP_075576137.1\|454271_457265_+\|putative-selenate-reductase-subunit-YgfK	gnl\|CDD\|236630	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional.	0
NZ_LR698995.1\|WP_075576130.1\|443811_445317_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_LR698995.1\|WP_075576136.1\|452779_454123_+\|putative-aminohydrolase-SsnA	gnl\|CDD\|235963	PRK07203, PRK07203, putative aminohydrolase SsnA.	0
NZ_LR698995.1\|WP_075576129.1\|443494_443812_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.02709e-20
NZ_LR698995.1\|WP_075576139.1\|457602_460359_+\|selenium-dependent-xanthine-dehydrogenase	gnl\|CDD\|132354	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase. Members of this protein resemble conventional xanthine dehydrogenase enzymes, which depend on molybdenum cofactor - molybdopterin bound to molybdate with two sulfur atoms as ligands. But all members of this family occur in species that contain markers for the biosynthesis of enzymes with a selenium-containing form of molybdenum cofactor. The member of this family from Enterococcus faecalis has been shown to act as a xanthine dehydrogenenase, and its activity if dependent on SelD (selenophosphate synthase), selenium, and molybdenum. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_LR698995.1\|WP_075576133.1\|447711_449160_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.71876e-54
NZ_LR698995.1\|WP_147556131.1\|457378_457591_+\|4Fe-4S-binding-protein	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	1.62889e-13
NZ_LR698995.1\|WP_075576134.1\|450399_451050_-\|transcriptional-regulator	gnl\|CDD\|377981	pfam08348, PAS_6, YheO-like PAS domain. This family contains various hypothetical bacterial proteins that are similar to the E. coli protein YheO. Their function is unknown, but are likely to be involved in signalling based on the presence of this PAS domain.	1.97592e-54
NZ_LR698995.1\|WP_075576145.1\|467998_468316_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	1.37966e-37

>NZ_LR698995.1|WP_075576137.1|454271_457265_+|putative-selenate-reductase-subunit-YgfK
MSDVMRPMPFGQVMDWILTEHETQGAIFGVRKAYVHEGGAEPIFAERIETPFGPAAGPNTQLAQNIVASYVAGSRFFELKTVQIMDGEELSACVNKPCIVAEDECYNCEWSTELTVPQAFAEYVKAWWACKLVAREYGLGDPDGFVFNMSVGYSLEGIQSPKVDAYIEGMKDASGTDVWAECRDWALANLDRFQNVDAAFVESVSPVVSRSVTESTLHGCPPDEIERIATYLITEKGVNTYIKCNPTLLGYDFARERLNELGFDYIAFDDTHFREDLQWVDAVPMFERLIELCDERGLAFGVKLTNTFPVDVTRGELPSEEMYMSGRSLFPLTIELARRIARQFDGRLRISYSGGADARNVRELYAAGIWPITMATNVLKPGGYERFSQIADLLAGAERREDVDVDAVTELASRTASGKDYQKPIKPAKPHKIDAELPLMSCFTAPCRSGCPIQQDIPAYLSRVDEGKFAEALQIIVERNALPHITGNLCPHPCGAKCERGFYEPDGARIRGHKLDAARGGFDEVVAKLRAAGPGRGAAAADKNVAVIGGGPAGLATAFFLTRAGAKVTIIERTDKLGGVARHVIPEFRISHDDIDKDVALCLAFGAQVQMEREVTSVQQLLDEGFTDVVVATGAWAPGKVGLKMGEEIDVLEFLAAAKAGEPMELGTDVVIVGAGNTAMDAARVAKRAEGVKNVRIVYRRTKKEMPADEEELQLALEEGVELCELLAPIGVANDMLACEVMRLGEPDESGRRRPEPTGDTVDVPATAVICAVGEQIERGLYEGAGVEVDRRGRPAGTATGVDHVWAAGDCRRGPATFVEAIADAQAVARDLAGVDFNAYAEKNVRADKHDAIMARKGELCLDVAGCTTSRCLGCATVCEVCCDVCPNRANVAVKVPGLAQEQVVHVDGMCNECGNCAVFCPWSGRPYKDKLTLFWSAEDMDASENRGFLPVEGGFRVRLASGEGVFDVDDAACGLPEDVRLTIRAVRDDYGYLLAK
>NZ_LR698995.1|WP_075576136.1|452779_454123_+|putative-aminohydrolase-SsnA
MLLVTNGRVITRDAANAYLESGAVAIDGERIAEVGDARALAEKYPGAEVVDAHGGVIMPGLVNCHTHIYSGLARGLSIKGCNPTNFLENLEQQWWKIDDNLTLDGTRASAYATVLDSLRDGVTTIFDHHASFCEIPGSLFAIKDVCEETGIRACLCYETSDRRGDEKRDQSIAENAEFARWAAEQDSGMIAAMFGGHATFTLSDETMDKMAEANDGLTGFHIHVCEGMNDVWDSRQNRGGISPIERLLQHDLLGPRTMLGHCIHVTPAEMDIIKETGTHIVNNPESNMGNAVGCAPVLEFFRRGIPVHMGTDAYTHDMLESLKVFLIIQRHNAAMPNVGWVEAMTMLFQNNPAMASAYFGREVGVLRPGAAADVIVMDYPVFTPFSDENVDGHMLFGMMGKNCRTTIVNGRVLYKDREFVAFDEERINAWTLEQSKRLWGTLNERAY
>NZ_LR698995.1|WP_075576135.1|451356_452691_+|purine/pyrimidine-permease
MANTKAAGEKGSSAILFQREGMPPVGEMLPCALQHVLASFAGIITPAILIAATFDFTTQQRTDIIQVALILSAIDTALQAFAPFRRIGGNLPIVMGVSFAFLPALQAMGATFSFGALLGGEIVGGIAAILFGIFYGKLKGFFPPVVTGTVIFTIGVSLYPTAIKYMAGGEGTPLWGTPQAWCVALVTFAVVFGLNNFAKGTLKLGSVFFGMIAGIIVSAPFGMLNFSAVGEAGVFALPKVMPYAIEFHPEVCITLAVVYPMVAIQVIGDVSAACLGSMDRMPDERELSGAIVSQGATSLVSAFIGGLPTSALGQNVGIICSNKVVNKWVFVTVAVVFAAAGLLPQLSAVLTAIPQPVIGGATVGVFGTITMNGVRMFTKDGLTPRVTTIVGTSVVFGLGIWMASGCLAGEGMPSWVTTVIGSNAITPAAIMAIALNLILPKPEE
>NZ_LR698995.1|WP_075576134.1|450399_451050_-|transcriptional-regulator
MTEAQLDFYKRLAHALALQFGSGCEVVVHDLEAADPSHSIVAIENGHVTGRRLGDGPSHVVLEALHAGGERLEDRLAYLTKTADGKILKSSTVFIRDDDGRAVGIFAVNYDITILRAMGDTIAEVVGTEPSAPREPEPIVRSVADLLDDLIEQSVQLVGTPVALMSKEEKVRAIRYLNDTGAFLITKSGPKVCKFFGISKYTLYNYLDEARSGEKG
>NZ_LR698995.1|WP_083551724.1|449277_450177_+|YitT-family-protein
MTPDEARRAERLSRRRMAYSFPQFFCLLNLGLILTAVALVLFKTPNHLAFGGTTGFAILLNTAIPVLPVSAYMWILNAALVLLGLVFLERKAVLWSAFASFALSGYTSLFEWLFPVTVSITGDLWLDVCFAVLLPAVGSALVFDIGASTGGTDILAMILRRRTDIEIGKALFAVDVGVVVAAIGLYGARVGLYCVLALIGKTFVVDGFIESIRQRKVCQVICDHPRDVEEFIVKKLGRTATVTFGWGAYSGRRQTILTSVLSRREAMKLRLFVRAQDPSAFITIVSSSEIVGRGFRGVN
>NZ_LR698995.1|WP_075576133.1|447711_449160_+|MFS-transporter
MSDGHDECGGSAGRRGEGRVHRGWALFTILCMTFMETLDGTIVNVALPTMQAELGVEATQIQLVASAFLVVTCAFLLVFGRLGDIVGKVRVFQLGVVLFTAGSALCALSSTLPALVGARVVQALGVAASLANNQGIITEMFAESRGRALGLVATFTALGAMAGPTIGGALVSSLPWESIFVINLPIGLVSLLVGLRVLPNRRPAERRSFDVVGALLVVPSILLLFVAITLMESGVNPTALIALAAGAALLVTFVLAERRQEEPLVRLEVFRSASCDIDLVAMVLVFLGLSGVTIVMPFYLQDALGLDPAVAGLVMACYPLVNATVGTLAGALSDRVGCIKPTLLGQAVFALGLLGLSLLTLSTPVSAIVPMLMFTSLGSAVFQSPNNSLIMGHAAPETLGFVGSLGNLMRYLGQSLGVTVSMGVLYGAMSARAGRVVTSYVPGEPELFMAGLSTVFRALAALVLVGLALSLVRTLVIERRHR
>NZ_LR698995.1|WP_075576132.1|447095_447719_+|TetR/AcrR-family-transcriptional-regulator
MPAIFTTGDREALRQRMIEAGWECLLERGYRATRVEDVARVAGIAQGTFYGFFGSKREFVAEMVINNRRELQAELGELRARTGGSIGRGDLGAWMRSVWHSERVVFRCIGARDYQRICELLPDEVCLGPELEGSLLDEIGRAVRDAGGTSDPQLASALQRTCALTLLARNQFEPEVLERTVDALIEATLDALYGRGDEGERGGEGDE
>NZ_LR698995.1|WP_075576131.1|445313_446822_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MKKLAEVLRDWEAVIGLEVHTELTALETKMFCNCRLSHDDEPNTNVCPVCLGMPGALPVPNERAIESIVMAGLATNCQIMRHSMFYRKHYFYPDMAKNFQTTQGPVAFCMHGHLDLEVSGAGAKERPDGTVEKDGDGSYVAPIRILRIHMEEDAAKMVHVGGEEGRITAATESLIDYNRCGTPLIELVTEPDLRTPEEARLFMEKLRQTFLTLGISDCSLENGSMRCDGNISLRRRGETKFGTKTEMKNINSFKSLHDALEYEICRQAEVLEEGGVVYQETRHWEPSRRRTVVMRVKETADDYRLFPDPDLAPFDLTDEFVERCRARIPELPDAKRDRYVADYGLRRADAAQLAGDPAVAAFFEDALAAAGEKSVETVAKVMVNLVPSYDALTPAQVASLSALLAEDAITFAQAREVLDAVNGTGEDPAAYVDAHGMRQSTDEGALGAIVDEVLGRCTDQVQQYRDGNKKVLGFLVGQCMKAAKGSGNPKAFNKMLAERLEA
>NZ_LR698995.1|WP_075576130.1|443811_445317_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MAACFDQLSARGIAAGVAAGDFTATEVARAALDAVEARDGEVQAFLQVTADLALSAAAATDRARAAGEKLGPLAGVPVAFKDNMNLAGTRTTCASRMLANYESPYTATCVQRLLDAGATPVGKTNMDEFAFGSSTESSAFHPTANPWDTARVPGGSSGGSAAAVAAGEVTLSLGSDTGGSIRQPASFCGVVGLKPTYGAVSRYGVVAFGSSLDQVGPFGRSVEDVALTMNALTAGGRDPWDSTSQPCETDFLAHLDDPIEGRRVGVVPALMEAAGLADEVRDAVSAAARALADQGAELVEVELPNIASAIAAYYVIAPCEAFSNLARFDGVRYGYQEPGCSTLAEQTSLSRAHGFGEEAKRRQMLGAYLLSSGTYDTYYYPAQQVRTLITADYARAYEKCDVILMPAAPRTAFRFGELSDPTQMYASDLFTISNNIVGNCGISVPLGLGAQSGLPVSAQLQGPAFADATLLTFARAIERSFSPEGGAPVAPAFAGKGGELA
>NZ_LR698995.1|WP_075576129.1|443494_443812_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPLTREDVAGIADYARIALTDAELDEMTSYMNSAIELLEPIRTYDLEGVEPTFHPVGDLSNVMGADVPDDTDRHLPLDVALANAGASRDRSFRVPSILGDQGGDR
>NZ_LR698995.1|WP_147556131.1|457378_457591_+|4Fe-4S-binding-protein
MDDETRRIWVADEGCISCRLCERACPAGAMRVEDKQARIDYALCIACGMCATKCRKGVIHDTLGIYAPAQ
>NZ_LR698995.1|WP_075576139.1|457602_460359_+|selenium-dependent-xanthine-dehydrogenase
MAANAEYRFTVNGEEQVVTCDKPLLRYLRDDLRLTSVKDGCSEGACGTCTVLVDDRATKACVLTTRLANGRDIVTVEGLPHEEQEAFVYAFGAVGAVQCGFCIPGMVMAGAALVHKVPNPTEDQVKVAIRGNVCRCTGYKKIIEGILLAAAILRGEKSIDPDLERGDDYGVGKRAFRVDVRRKVLGYGKYPDDIDERDFPDLTYASAVRSKHPRARVVRIDAEKARAMPGVLAVLTAADVPVNAVGHLLYDWDVMTAEGDVTHCVGDAIALVVAEDAATLEKAKKAVKVEYEVLEPVRSIEEARAEGAPVLHKPYLAFGNWVTPENNICQQRHVVRGDAAAALASAAHKVTRTFKTPFTEHAFLEPECAVAFPYKDGVKVCSSDQGAYDSRKEIAHMLGWDATPECVVVETMLVGGGFGGKEDVSVQHLAALAALAVNRPVKVRLTRQESINFHPKRHYMEGTFTLGCDEDGTFVGLDCEINFDTGAYASLCGPVLERACTHSVGPYCYQNTDIRGFGWYTNNPPAGAFRGFGVCQSEFALESLIDLLADEVGISPWEIRYRNAIEPGKVLPNGQIADRSTALKETLLAVRDVYEAHPGHAGIACAMKNSGVGVGLPDAGRCKIRVEDGRAVVYSATSDIGQGCNTVFLQDVAEATGLPLSHIANGECSTENAPDSGTTSGSRQTLITGEAVRGAAFLLRDAMLAVEEGTETGTEPVVAHGDGFVVEYADGTPYVGPGAGYHAQDPVAALAALEGREFSYEYLEKTDKLGADVPNPKSHVAYGYATHVVILDDDGRVTEVHAAHDSGRVVNPIAIQGQIEGGVLMGMGYALTEHFDLEDCVPQVKFGTLGLFRATDIPDIHAIYVEKDELLDVAYGGKGIGEIATIPTAPAVQNAYRALTGELQCELPLRHSYYAREK
>NZ_LR698995.1|WP_075576140.1|460468_460750_-|hypothetical-protein
MDVSSARAAAKKAVEILVELIPEAKYASLEGIELSEDGASWRVVVGYILGSDLPTTALAGLTTSPKSLRTYKTLILNGATLELKRMGPYHEPA
>NZ_LR698995.1|WP_075576141.1|461022_462825_+|hypothetical-protein
MRLENEQLHYRARFEVFPYDTQNPAMPKIQQILWDWLRNKERRRKEGDLFSTLSAAGARDAFFDGKLETNYSGGLNVDGQTRLAVDAFASEQDGRVLWAMEYDEPDSRVWFRHWHTRVGLSGSDSGSCLVNVRITYYTLPDYVGNPGLVPFANVPNFVREIVELGAYQSCVGETVLNREETYLTSDNIDEEFTSNLLSEQRELPLVLMCTDESGATPVWDATELAKKLVGMANVYVADWRDAGLRGRLRELFPRDMPAFQYRCGASMLRIYRPGIDLSDPDGWRTHTFFPKDRIDHYCKRGPNEFVDTLSRGLGRSITKGESDILELGDVEWARSSRASEELSRRLEEMRASSLIGKPVGEGAAASEKRVEELEAELRESQWFLGEYERENASLRGTTAELKSENNELSSENSTLKYRLSSAEDRADSLEAEIGEMRGALEAINALDRMPSSLEELLDLAESIWPSRIVILDDAKSSAQSFNGDLNEEWQIIRSVATVLWPLYFDDDVMSCDVANEYKVKAGYELALTEKKLTKADSKKMSERRRRYKGAEIDITPHIKGRNKNPKFAFRLHYYVDRDGRKLVIGHCGAHLTTAGTQKLS
>NZ_LR698995.1|WP_075576142.1|462793_463819_-|Fic-family-protein
MGYEPPFERTSTIDTLCMEIAELVGMLHPSSGLGTSPVLHRELRIRTIRSSLMIEGNTLSEEAVTAIMDGKRVLGPARDILEVENAKRAYELIDSLDPLSLDDLLRVHRVMMDGLIEHAGCFRSGDVGVFDGDTLIHAGTPANYVPQVMANLFGWLASTDLHPLLASCIFHYEFEFIHPFADGNGRTGRLWHTLLLSRWRPALAWLPVESVIRERQQGYYRALAESNAASSSESFVTFMLQVIRDALLPFSLPETEGESRARQALAYFSANPKGTVAGLADLLGCSKRSAERLVASLRKEGKLRRKGAARGGTWVVRTQIEGAGRSIRAPGLSSASASPPW
>NZ_LR698995.1|WP_147556133.1|463944_464427_-|hypothetical-protein
MDKLTWIHFHAFCWGDERWTLACDLLSGRVCLTSHAERKLRCINNYIRATRTELDTIQSLLVVRQRVIDNAQFHVAQLGAATLELIESKYPYDRLNGYVQHIFSPSYFAIDDTGRSFSCGAQGKSLSCYTWGVETDSPVKKLFSLIKKESGLSRHSDWWR
>NZ_LR698995.1|WP_075577487.1|464691_466107_+|sodium:alanine-symporter-family-protein
MSAVAALNTNVLWGVPMVVLMLGTGVFLLVVTRGVVFSRFNVVMRYTTKTLFQRPDPSEAGEGTISPFQAVCTALAATLGTGNIVGVALAVATGGPGSIFWLWLSALAGMVIKFCEVTLSVAYRTRNERGEIVGGPMYYISRGLGKTWLAMLFAAFGFLASFGIGASVQANSLAGSVNATFGVPLPVIGAVVALLAGLVLIGGITRIAQITEKLVPFAAIFYLLGAAAVLVVNAGEIPAAIAQIFRDAFTGTAATGGFLGATVMYACRVGMSRGVFTHEAGMGSAPIAHASADTDHPARQGLWGTFEVFFDSIVMCTVTGLVIITSGLWHADPMMSEGAMSSAAFGQSIPGGQYIVTVGLMLFAFATLIAWYYYGEKCVEYLFRKSRAQRVAVRVYQVAYVAMVFAGCVTNLDVVWEFADCFNGLMAIPNLIALIALSPVIRRLAADFFRDPDRRRPRDTDYSGMLSFRDK
>NZ_LR698995.1|WP_147556274.1|466230_467571_+|hypothetical-protein
MVTVLALGSCGNLGEFDEEDVARQAEQYYAEKYGDNARVVDVWEDRSYALFGYQSSGRAFCTMSDGQTVLVDFEDGVVGDNRQQDEVTAAYEQRFREELEGCCERLGDAGCDVASVTVNGVPLEEDGFFAGCISTYYWPEDPAGEKNGEAETTVEQSASFFYARYTGDESFFEQEASRVSLGVPYVEIELSGADADYAYGFPTDVPETPAWVAPIDETCRALLPLTDGDAETRVVVYQAGCCNEAFEDADSAVPSDAENGKLGELSPFDDNDTGAGDIGSWLIVEWVPVGKGVYVTSDECGARLRAGDVTLETVESPVSLEELQESGSLERFDEREFAPAAFEAYSLAVAPDLFARLPESMRDKGWFNIRLAYDNQDPQTGLAELGVTPGGLAPTLYRVEKNPAAEDVDSAPPYEVIAMRTETLANGFQYSEPELFADEPLLFVRM
>NZ_LR698995.1|WP_075576144.1|467710_467995_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MATAAATESISAKLRKDEKDRFSMICDEIGTSPSNAIRMFVSAFNRRGGFPFDPSNPYGFSQETLAAMDDAVTGRNLSGPYHTVKEAMAALDEE
>NZ_LR698995.1|WP_075576145.1|467998_468316_+|type-II-toxin-antitoxin-system-YafQ-family-toxin
MLELRFTAKFKKDYKRVKRQGKDLAKLERTLEALMRGEALPDAMRDHSLGGTYRGHRECYIKPGWLLIYRVDEEGFVLVATRVGSHSELLGAALLSNMNLRGYAC

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Crispr_ID: NZ_LR698995_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR698995_2

912155-912230

Orphan

Consensus_repeat	Method
TGGCAATCCGACGCTCGGCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR698995_2

>merge|NZ_LR698995|2|912155-912230|CRISPRCasFinder
TGGCAATCCGACGCTCGGCGGCGGGTCGCTTCGCGTTGTCGAATCGGGGGTTGTGGCAATCCGACGCTCGGCGGAG

>NZ_LR698995|2|2|912155-912230|CRISPRCasFinder
TGGCAATCCGACGCTCGGCGGCG	GGTCGCTTCGCGTTGTCGAATCGGGGGTTG
TGGCAATCCGACGCTCGGCGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR698995.1\|WP_075576507.1\|916250_916727_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_LR698995.1\|WP_075576499.1\|904876_906388_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|180842
NZ_LR698995.1\|WP_075576510.1\|921183_922188_+\|DHH-family-phosphoesterase	unknown	unknown	gnl\|CDD\|223691
NZ_LR698995.1\|WP_075576501.1\|907772_909509_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_LR698995.1\|WP_075576497.1\|902417_903461_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_LR698995.1\|WP_075576496.1\|898623_901470_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_LR698995.1\|WP_075576509.1\|918067_920674_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_LR698995.1\|WP_075576511.1\|922184_923105_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
NZ_LR698995.1\|WP_157886227.1\|923278_924199_+\|adenylyltransferase/cytidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|235536
NZ_LR698995.1\|WP_075576503.1\|910339_911134_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|213987
NZ_LR698995.1\|WP_083551483.1\|901473_901986_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|376504
NZ_LR698995.1\|WP_075576512.1\|926183_927542_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235640
NZ_LR698995.1\|WP_075576506.1\|913405_915967_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_LR698995.1\|WP_075576500.1\|906925_907762_+\|cell-division-protein-FtsQ	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577518.1\|924195_926139_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_LR698995.1\|WP_075576508.1\|916753_917998_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_LR698995.1\|WP_083551485.1\|911143_911968_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_LR698995.1\|WP_075576502.1\|909505_910339_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_LR698995.1\|WP_075577516.1\|920745_921153_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_LR698995.1\|WP_075576498.1\|903462_904752_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133060

Protein	Function_ID	Function_description	E-value
NZ_LR698995.1\|WP_075576499.1\|904876_906388_+\|IMP-dehydrogenase	gnl\|CDD\|180842	PRK07107, PRK07107, IMP dehydrogenase.	0
NZ_LR698995.1\|WP_075576503.1\|910339_911134_+\|PHP-domain-containing-protein	gnl\|CDD\|213987	cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. HisPPase can be classified into two types: the bifunctional HisPPase found in proteobacteria that belongs to the DDDD superfamily and the monofunctional Bacillus subtilis type that is a member of the PHP family. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	5.47325e-08
NZ_LR698995.1\|WP_075576501.1\|907772_909509_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.4935e-77
NZ_LR698995.1\|WP_075576497.1\|902417_903461_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.76802e-107
NZ_LR698995.1\|WP_075576496.1\|898623_901470_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_LR698995.1\|WP_075576509.1\|918067_920674_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_LR698995.1\|WP_075576511.1\|922184_923105_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	4.51189e-99
NZ_LR698995.1\|WP_157886227.1\|923278_924199_+\|adenylyltransferase/cytidyltransferase-family-protein	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	4.91359e-89
NZ_LR698995.1\|WP_075576507.1\|916250_916727_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	3.68894e-42
NZ_LR698995.1\|WP_083551483.1\|901473_901986_+\|signal-peptidase-II	gnl\|CDD\|376504	pfam01252, Peptidase_A8, Signal peptidase (SPase) II.	1.90507e-33
NZ_LR698995.1\|WP_075576510.1\|921183_922188_+\|DHH-family-phosphoesterase	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	4.56433e-50
NZ_LR698995.1\|WP_075576512.1\|926183_927542_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	0
NZ_LR698995.1\|WP_075576506.1\|913405_915967_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_LR698995.1\|WP_075577518.1\|924195_926139_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	4.63521e-162
NZ_LR698995.1\|WP_075576508.1\|916753_917998_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.17239e-126
NZ_LR698995.1\|WP_083551485.1\|911143_911968_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.14149e-42
NZ_LR698995.1\|WP_075576502.1\|909505_910339_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	6.69238e-17
NZ_LR698995.1\|WP_075577516.1\|920745_921153_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.60327e-31
NZ_LR698995.1\|WP_075576498.1\|903462_904752_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133060	cd06438, EpsO_like, EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.	2.15713e-81

>NZ_LR698995.1|WP_083551485.1|911143_911968_+|MurR/RpiR-family-transcriptional-regulator
MAPESLFRDNVNYTDAEHLIIDFVTMCPAEFLVMSIQQVSARLGVSDATVSRFARHAGFRDFKELKAAVASATVGPAEKIRTSLEGSGSARAFLEGQLENIGRTIDGLDDDAFSRAVDALSGARRVLLLGKGAAGSLAELLRFRLSRFGKEVIVLAAGSDAMEGLVHADAQSAIVAFGFQRVPAEVEIALAYARSVGAVSVLVTGRRHIGSRVSVDVELIAYRGEPRGYHSMASAVALLDALVVAVAGRMDGEAMERLERLKALKREHESRLPR
>NZ_LR698995.1|WP_075576503.1|910339_911134_+|PHP-domain-containing-protein
MDIDFHTHGKLAKYLAFSPDYTDWLFNEAISAGLDALCLTEHFNTQGFHDVYADIARRFPRIGDAYDVNGLLVFPGMEIDVAEGGHTLALGPMEDVLDLNAWLEPHKARGHFLPFGELAHEVHRRGLRLGAGHPFRAPGHLPELPDEQLAEFDFIDLNGKDLARDRERSERLTFALGERLGIPVVSGSDTHQAFQYGCVVTRVARRCTTFDDLFAQVEAGAYEIVLADDAAFRVKTAGYLKRALKEIDRLGGDYVATILAGQAL
>NZ_LR698995.1|WP_075576502.1|909505_910339_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MIEKISESVLDKVSIDFLRDQVLKNAYGNDDTPIARLDPRVLLLWYLFFGVVPWFLNDVVVLLGIFVLTVVTTRVARVAPLVLFVFALGVFSQTGYTFVVSLLFGGSLETLVPLLVLTLKVATCSLASITVFSGLDPDKLSNGLLWFGVPERLSFSIAFAYRVLPILMEELQNILLSYRLRGRAPAHDTLGGKVRWLIYQVKIIVQSFYPLMLNTAKRSRTTVEALELKGYRYASTNLKVLKIKLSSLHAGRREAAFVALSAAWVVLCLVISRIVGL
>NZ_LR698995.1|WP_075576501.1|907772_909509_+|ABC-transporter-ATP-binding-protein
MSAVTLRDVTFTYPGAAAPTLRHVNLDVAEGDFLAIMGANGCGKSTLCKTMNGLIPQFIVGDLEGEVTVAGVDAATSQIGELAQRIGYVYQDFENQLVRPTVIDEASFSCLNFACEDYVERGMRALELCGLADRADSYIWQLSGGQKHLLALAGAIALEPDVIVLDEPVAQLDPYHAERTYEVLRELNEKYGKTIIVIEHHTDFIAEYCKTACLMADGAIAWKLPAREALRRIDDLSASDVHPPQIALAACELVRVGALPEGAPLPTTVDEGATAFWGVPFVARERGHAPASAAQPVVSFRGVDVSYRSVKGAPRQVFRDLDLDIRQGEKVALVGANGAGKSTLMKLMCGLIKPQAGEVLVGGTSTRGISPDELSEKVSIVYQNPEQMFIKDSVRADVEFAMRARGIEDAAERASSLLERFRLTELAERDGRLLSGGQMRRASLAVGIALDPPILLLDEPTANLDIGTRQEIIQLVSDLRGVTDTVVIATHDMQLVCQFAERVIVLTDGEVIGDAAPDEVFMDEGVVARSGIRPPEIFQMGRALDCRAACYTLEEFLACFPAWEAARGEKNVVEEMCA
>NZ_LR698995.1|WP_075576500.1|906925_907762_+|cell-division-protein-FtsQ
MSAAKVSYTQSQKLMTFVLSMSLYGLATLISELIPSVQVGVVEFSVEFFLFIPLTIAMLFDPLSAALGAATGELVFSEIMLGQFGGIGELEKFLTVTIAVYIAGTLVKDPRDMKSIALVSLGCTALQLVMSAGVDICKVVFAVEEFEAVPGLPESVFFTEGFSAVNDLLFSGILFCMLPTMFLVPRLYGKIEPLLGMRPRTAENAPGAPSAKLVAIAVACFAIAAAVACFAEAGFSLIEWEAEWAKSEGAIFAGIAVAAVVAVVAGFWAYRSAQLKAA
>NZ_LR698995.1|WP_075576499.1|904876_906388_+|IMP-dehydrogenase
MATFFEGESHTFSEYLLVPGYSSAENVPANVSLRTPLVKFRRGEEPALSLNIPMVSAIMQSVSGVDMGVALAIEGGLAFIYGNQTPEAEAAMVKAVKDHKAGFVESDSTLTPDMTMEQVIELKERTGHSTMPVTDDGSSRGKLLGIVTSRDYRPTRDDHQTRVAEFMTPREKLIVGDKDITLKRANDVIWENKLNALPVVDDNDHLMGIVFRKDYDQHKSNPDELLDANKRYMVGAGINTRDYAERVPLLVDAGADVLCIDSSEGFSEWQKRTIEWIRANYGDSVKVGAGNVVDADGFRFLADCGADFVKVGIGGGSICITRETKGIGRGQASAVIDVCRARDEYFEETGVYVPVCSDGGIVYDYHMTLALAMGADFMMLGRYFARFDESPTERVNVNGQYMKEYWGEGSARARNWQRYDQGGASKLGFVEGVDSYVPYAGSLREGVRNTLYKIKSTMCNCGAKTIKELQQKARLTLVSSTSIVEGGAHDVVVKDSQHSVSYR
>NZ_LR698995.1|WP_075576498.1|903462_904752_+|glycosyltransferase-family-2-protein
MEFNQFGITPIVFFNFLIWVFFTFAYLYQAVFMIRALVQGTVRLPEAKRLHSYAFVIAAHNEEAVIGNLVESIFAQDYPRELMDVFVVCDACTDDTHAVAEAAGATVWDRNDLARRGKSWALDYAFDRILNDYDGAYEAFVVMDADNLVAPDYLSVMNRAFDAGYLVCTGYRNSKNFDSSWISSAYAIWFIREAKFLNNARMMSGTSCAISGSGWMVSERIVRGMHGWDFHTLTEDIQFSTFCCANNVQIGYAPAEFFDEQPITLKASWTQRMRWTKGFYQVFFSYGRDLAKGITRGQFASYDMLMTIAPGMILTLLSFSVNATYLVIGSLSHGFFATQAELDMCTGSLIMTFVSLYVTFFLLALITTVSERSHIHAKKRWRVVTNLFTFPIFMMTYIPITVAALFKKVEWIPTKHDIAVDLSDVVQDA
>NZ_LR698995.1|WP_075576497.1|902417_903461_+|RluA-family-pseudouridine-synthase
MPSRIVNLLVEPEFDGMRLDTFLAAAPGMPSRSACARLVEDGAVTINETPATSKSERVLLGDRVRATVEEPEAVGGPLAPNPYITLDIRFEDDHLIVLSKQAGLVCHPSPGHVDDTLANALVAHCGYSRLGMLQGEERPGIVHRLDMDTSGLMVAAKDDDTQRALQDLIRLRVLDRRYVTLVHGPIAHDEGTIETGIARSTRDRLRMAVSDAPGAREAITTFRVLERFEAGPRDDGYTLIECHLYTGRTHQIRVHLRHVGHPLVGDPLYGRGDLRQNLGLARQFLHSWHIRFEHPATGETVELADTLPDDLLDVLESLGERSMGRTPAGEGICPLLVPSGRVARREG
>NZ_LR698995.1|WP_083551483.1|901473_901986_+|signal-peptidase-II
MSAADPTRFARVRRLALFALVAGAVVALDQLSKLAARSLLVPGEPVTLIPGVMDLSLIYNTGAAFSMGEGAGPVFVLVAVLMCVAGAHVAWRRTDVPLSLLLVVAAVVGGGIGNAIDRVALGAVTDFFMTTFMDFAIFNVADIFVTCGVIVALVLWWRWDAARERSAAGR
>NZ_LR698995.1|WP_075576496.1|898623_901470_+|isoleucine--tRNA-ligase
MKEESVAKNEYKKTTNLPSTGFPMRASLAQNEPKRLAMWEENHVYEQMIAKNEGHEKFVLHDGPPYANGPIHLGHAQNKISKDIINRYWSMRGYQTPYVPGWDCHGQPIEHKVETMLGTEKFNQLPTEKIRELCRKMAVEQVDTQRQGFKRLGVLGEWDNPYLTYVNDYDATDVEIFKAIFDAGAIVQGSKPVHWCSHCHTALAEAEIEYGDEVSPAIFVRFEMTTVPAGLEEWAGRLFVDIWTTTPWTLPADDAVILHPEATYVALVHDGHAEIVAEALAERLVEKFGYGELELVRGEGGEPWRATGEQLAHNRYKQPIFGEQGETGEFIYADYVTLDDGTGIVHSAPGHGVDDYLAGQRFGIPTIMPVDDDGRFFVGDKIGTGGPWSGMDVNDANPKIIEWLRERGVLILHEDISHSYPHCWRCKEPVIFRATSQWFVSMDKPLANGRSLREQALEELSKVRFYPSHAIKRIGSMVEGRPDWCISRQRNWGVPIPAFTCQDCGETVMNDDTLDAVIELFRAKGSDAWFTDDPASYLGDACVCPKCGGHHLKANSDILDVWWDSGVSHTAVCRHRDNLEFPADMYLEGSDQHRGWFMSSLMTSVGAYGVAPYKSVVSQGFTLDGQGRKMSKSLGNVIDPNAECDTRGADILRLWVTSVDTSNDIPCDGQILDHVGEAYRRFRNTLRFLLGEIEGQFDPATDAVPYDELLPYDKLTLARLCQVHDQVSAAYESYRFNVVYRTLYDYVITELSNGYLNATKDRVYCGEKDGFERRSALTVWAQILSMLVHDLQPILVYTTDEAMSYLPASLRDGQEFAALLDWYQAPWTAEVYEPYLAAYDAVVEARAAFTKAYETAIADGTLAEKTTQAACATLTAPAELHALLAGELGCDLAEPFVCSEVTLVSGDDLACAVEPARGEKCPRCWNFRELGEDGLCPRCSHAVAELGE
>NZ_LR698995.1|WP_075576506.1|913405_915967_+|leucine--tRNA-ligase
MSDAEKNFEVPAYDAEEIETRWQAEWDAEELYKTEESPEKPKKYVLEMFPYPSGDLHMGHARNYTIGDAMARQARMRGFDVLHPMGYDAFGLPAENAAIKHNTQASVWTHQNIAQATKTMRRMGFSYDYDRMFNTCDPEYYKWGQWIFLKMWEKGLVYRDNSPVNWCPGCQTVLANEQVVDGKCWRCGSVPEKRALSQWYFKITDYAQELLDDLKKLEGKWPERVRAMQSNWIGRSEGAEIDFTLADKDGVTPTDTKITVFTTRPDTLFGVSFFLLPPESPLAAELVAGTEHEAAFLELKAAAEKVSSVDRQGSEREKHGVFTGRYVINPVNGRPAPIWVADYVLMDYGTGAVMGVPCGDQRDFDFAKKYGLEIAPIICEKDDPLYERLKDERELVVTSVDWDHAMEAEGYLVQSGRFTGMKGGKHSEAVDAIIDWLGEQGLGRKTVQFRLRDWLISRQRYWGNPIPMIHCDCCGDVPVPYEDLPVTLPDTLDLGAGETLAAYAPFYETTCPRCGKPAKRITDTMDTFTCSSWYYLRYCDPHNEELPFSREAVDRWMPVDNYIGGIEHAILHLLYSRFFTKVLRDLGMIGIDEPFENLLCQGMVKDANGDTMSKSKGNVVPPSSVIEPYGADTMRLAILFIAPPEKDFNWDEEAVAGANRFIKRAWRVVWLLSQGAAAGTVDAGALDAAGRELWRTLNGMGLKCTADFDRGQFNTAISAVMEITNAASKYVNDVSVEQRDPALCFAVAHAIVTMLAPICPHWAEELWHKALAREGSVYNAAWPEFDADAAKADEVEIAVQIKGKVRGRVTVPADASDDEVAEAAKAAVAAQLDGKDIKKVIVIKGRLVNIVAV
>NZ_LR698995.1|WP_075576507.1|916250_916727_+|ribosome-maturation-factor-RimP
MPKTGIEQQIIDALEARAAERGVDVVDVEVVGATKAPCVRVRIDHADETLPTITLDEVTEETGWISDALDELDPIPSSFTLEVSSPGMDRPLRRERDFERFAGQTVAVSLVPGEGRRRYTGTLLGIESGTVALEVDGERVGLSFDDIRKCTIKPDFSA
>NZ_LR698995.1|WP_075576508.1|916753_917998_+|transcription-termination/antitermination-protein-NusA
MASEMMAALEQLCEERHIDQLDLITRLEQSLAKSYADVLHLPFGARVTIDRATGKVYVYELVPKGEEDPETGEYSEFDEVDVTPADTSRIAAQHAKAEIRAIVRNAARVQIYEEFSQRVGDIITGTVLQSTPDFTIIKIREGVEAELPHFDLRRYPEERNERPAGERYSHNQRIRAIIVDVRDPNSTQPVVRGERQRPPIVVSRTHPDLLRRLFELEVPEVYDGVVEIRSIAREAGVRSKVAVSSNDDRLDPVGACVGPKGSRVRTVVSELRGERVDVVLWSDDPARCVASALSPARVSRVIIDPETGYATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKNESLAAGILRDLPRATVEEDPVDDGEAHRCEYVGPNGIQCRNMARPGSRFCGVHEEMAAAEVSSDPDSLI
>NZ_LR698995.1|WP_075576509.1|918067_920674_+|translation-initiation-factor-IF-2
MAKTRVHDLAKEYGISSKEMLEHLRDLKIPAKSASSTLEDAYVSMVRKKLKPILEAHAAEIEAQRRAEEEAKAEEARIAAEKAEAERIAAERRRERERAEEERRRAAAEAERKAREEAKAEAERKAREEAEKNRVRDTAPKSVPSFSSLLDQIAQQEQILKQQAEEAAQKKAAGQGRNQRTRGESRPSAAPAPASAPSSEPGGRRRGKKGRRGEGDGEDRYSRMAREAEAYNRSRVLEEARVAVEEASRESTGRRKRRKERRQRQAEEHAKEQRIEEALANDQDLSQLDTVKVPQGSTVQELAELLGVPANDIIKRLFLLGTPLTLTESMSDELIELVADDLGRDVKVMTKEEENSFTFYDDPADLRPRPPVVTVMGHVDHGKTSLLDAIRHTGVAEGEAGGITQAIGASQVTINDRLITFIDTPGHETFTAMRARGAKVTDIVILIVAADDGVMPQTIESINHAKAAGVPIIVAVNKIDKPGANPDKVRQELTEYGIIPEEWGGQNMFVNISAKKKIGIDELLETVILQADVLELKANPDTFASGNVLEAKLDRGRGSVATVLVTRGTLHIGDALVAGMAYGRVRAMLDPKGNSVTEAGPSDAVEILGLQSVPMAGDEFRVFHDERDARDLADQRALKARIEEQNRVKHVTLENLFDTMADAEVKELNLIIKADVQGSIEALQDSLDKMDQSEVRINTIHSAVGAITETDVILADASNAIIIGFGVRPEAKAKSAAERDGVEIRTYSVIYKAIEDIDAARIGMLKPTEVEVQTGVAEVRDTFKVPKVGIAAGCMVQEGEISRDDQVRLVRDGIVVYEGRIASLRRYKDDVKSVKAGFECGIGLENFQDVKPGDQIEGFRIDQVARTE
>NZ_LR698995.1|WP_075577516.1|920745_921153_+|30S-ribosome-binding-factor-RbfA
MKQNQHSRRTNEQARVKLANILLFEVSDPALSLVTITGVEVSVDKSYLRAYVSCDAGRYDEVTAALARARGRIRSLLGRSLGWRVTPELDFRIDTTTDEAERISRALKDAPATLAVEKDEFGYPVEPAADDQVEG
>NZ_LR698995.1|WP_075576510.1|921183_922188_+|DHH-family-phosphoesterase
MAAQAPDFDAIAHLVEGARTVAVCAHTSPDGDALGSELALVELIERTWPEKRVVPLLADDDVVPRIYEFLPGVERLVRAAAFDGGPDLFVCVDLSHPDRLNDARAVLERSSRVAVIDHHPSGEPFWDAGVVRPDAAAAGVLVAELALHLGADLTPTMAQNLLCALVTDTGRFQYQNANGEAFRVASALVDAGASPSEVALRVYQSDRLSYLHLSATVMGRITTFEQGRIAYSYATAADLEANAVPVAECDGLVDIVRRVDGCEVALFLKEVPGGRVRGNLRAKSDLDISAVAREMGGGGHPAAAGFTVDGDIDQALAVVLPKLRALYAVDGADR
>NZ_LR698995.1|WP_075576511.1|922184_923105_+|tRNA-pseudouridine(55)-synthase-TruB
MSRRPSAFSALIAVDKPAGLTSHDVVARVRRAVGERRVGHAGTLDPAATGVLVVGIGQATKLLGLLTLDRKGYRATLSLGAETTTDDAEGDVTRRAPVPDEALDEERAAAEVARLVGTRDQVPPRYSAVSVNGRRAYDAARSGEELELAPRRVTIHAARLVEVRPAERAWVVDLDVSKGTYVRSIARDLGRELGCLAHVGELRRTFSGPVTLADCVGLDELSERGADLVHERALDPAAVLGLPVRELLVDEIPDVACGRRIAAGADLAQGARVALVFAGGLVGIWRRDGRHLVCESNFPQGIEGVR
>NZ_LR698995.1|WP_157886227.1|923278_924199_+|adenylyltransferase/cytidyltransferase-family-protein
MCAIGAFDGVHLGHRALIERARSEALQRGDELVVVTFSPDPSVVLCPGHPQRMLLSDEGRLRALRSIEGVDRVVVLDFTQELAALPYDRFVLETLGGLVGLDAIVVGSDFRLGAGGEGTVEALSGLGRAHGFDVIGMDLLDEGGAPVTASRIRRLVGDGRVEAAAGLLGRCHVVSGEVVHGRGEGTGFGFPTANVRVRDGLCLPAEGVYAGYVACRETAWPAAINVGKPRSFSPGEEGEPFLEATLLGFDGDLYGARVEVAFVRWLREPRSFSTVEELERVVLGNVSWVRGTLGERGIDLRGACGA
>NZ_LR698995.1|WP_075577518.1|924195_926139_+|DNA-primase
MITDEDKERVRQATDLVQLVAETVELRQRGHEFWGCCPFHGEKTPSFKVNPQTGLWHCFGCGEGGDVFSYVQRRENLEFPDAIRYLADRAGIELSEERGARRGPRKTRLMEALGAAEEFYHTMLMRGKGAGPDEARRYFAGRGFGSEVCRRWGLGYAPGHGSLVAHLRGLGFTSAELVAADLAQERSGRVADRFFERVMFPIHDEQGRTIAFGGRVIGPKRDNVAKYVNTRDTAAFNKGRHLFAYDRAKEGMAATGDAVVCEGYTDVIAMHEAGFTNAVAALGTAFRLDHVRLMERQRVSRIICMFDGDAAGQRAAERAVRYVDKTSAALMCVVLPDNQDPMEFLAAHGADALRPILASARPLMDFVFEKRLEGYDLSAPGRRVRALEDMAGVLAPLKRSVLLDEYATRLADALGMDVDETKRAIREAPVRELDEERPARRPAASTPSAAPSAPAADAVEEGGVPDDYVPLEAYDAGAAAVAEAPAPPAADMGRLSADERMQLSAERELLCVIAQRPDAMRALGERIARISWADERHEAMAWAMLSTPEGTPPAEVVAAAGAVVREAPQILSGGRVMDEEELSDEQKLELIVDNAELCSCRRRIRQIRARLRSAPADAESERLFAEATELQRRSTELAARLSSVFSE
>NZ_LR698995.1|WP_075576512.1|926183_927542_+|RNA-polymerase-sigma-factor-RpoD
MAAKKTNDGIKLSDDLQKVVDGLVAGASPSGVTEDDIQLAIKDVDVDSDELSDLYDELRSRGVEVSGSPASEAAEDFSADPSVDDDFDDEGEGGVDSFDDEEESESVAEAKIVKEALRSVPKARVAKPKRSSRARARRADTSTAMLTGDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEASEKLEAAEAGELTLTRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSSAVAPPEAASDSMLREQLDQVLDGLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSGRLKDYMED

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Crispr_ID: NZ_LR698995_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR698995_3

1927030-1927106

Orphan

Consensus_repeat	Method
CCCTCGCTCGTGAATTCATATGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR698995_3

>merge|NZ_LR698995|3|1927030-1927106|CRISPRCasFinder
CCCTCGCTCGTGAATTCATATGCGACAGTTTTTGGCCTCAAAGCCGACAAGAACCCACGCTCGTGAATTCATATGCG

>NZ_LR698995|3|3|1927030-1927106|CRISPRCasFinder
CCCTCGCTCGTGAATTCATATGCG	ACAGTTTTTGGCCTCAAAGCCGACAAGAA
CCCACGCTCGTGAATTCATATGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR698995.1\|WP_075577309.1\|1930630_1931152_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_162273017.1\|1923075_1925613_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_LR698995.1\|WP_147556237.1\|1929605_1930562_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577312.1\|1937552_1938638_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_LR698995.1\|WP_075577304.1\|1918247_1918598_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NZ_LR698995.1\|WP_147556235.1\|1929349_1929619_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577314.1\|1938951_1939485_+\|DUF4860-domain-containing-protein	unknown	unknown	gnl\|CDD\|379778
NZ_LR698995.1\|WP_075577593.1\|1927463_1928831_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NZ_LR698995.1\|WP_147556233.1\|1925833_1926910_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577306.1\|1919691_1920855_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_LR698995.1\|WP_075577305.1\|1918612_1919695_-\|response-regulator	unknown	unknown	gnl\|CDD\|225971
NZ_LR698995.1\|WP_075577301.1\|1913606_1914617_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577300.1\|1911868_1913215_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_LR698995.1\|WP_075577315.1\|1939481_1939865_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577313.1\|1938638_1938968_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577303.1\|1916050_1918126_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NZ_LR698995.1\|WP_075577311.1\|1936606_1937542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376628
NZ_LR698995.1\|WP_075577310.1\|1931168_1935539_-\|Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|376100
NZ_LR698995.1\|WP_083551657.1\|1920844_1923079_-\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NZ_LR698995.1\|WP_075577302.1\|1914725_1915910_-\|FprA-family-A-type-flavoprotein	unknown	unknown	gnl\|CDD\|223503

Protein	Function_ID	Function_description	E-value
NZ_LR698995.1\|WP_075577306.1\|1919691_1920855_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.83563e-44
NZ_LR698995.1\|WP_162273017.1\|1923075_1925613_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.8769e-68
NZ_LR698995.1\|WP_075577312.1\|1937552_1938638_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	3.73403e-55
NZ_LR698995.1\|WP_075577304.1\|1918247_1918598_-\|Hpt-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	0.00275828
NZ_LR698995.1\|WP_075577314.1\|1938951_1939485_+\|DUF4860-domain-containing-protein	gnl\|CDD\|379778	pfam16152, DUF4860, Domain of unknown function (DUF4860). This family consists of uncharacterized proteins around 160 residues in length and is mainly found in various Eubacterium and Clostridium species. The function of this family is unknown.	2.18523e-24
NZ_LR698995.1\|WP_075577593.1\|1927463_1928831_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	7.49483e-58
NZ_LR698995.1\|WP_075577311.1\|1936606_1937542_+\|hypothetical-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.66488e-19
NZ_LR698995.1\|WP_075577305.1\|1918612_1919695_-\|response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	4.10197e-84
NZ_LR698995.1\|WP_075577300.1\|1911868_1913215_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	6.47111e-126
NZ_LR698995.1\|WP_075577303.1\|1916050_1918126_-\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NZ_LR698995.1\|WP_075577310.1\|1931168_1935539_-\|Ig-like-domain-containing-protein	gnl\|CDD\|376100	pfam18676, MBG_2, MBG domain (YGX type). This domain is found in a variety of bacterial extracellular proteins. This domain is related to the MBG domain (pfam17883). But it replaces the characteristic YDG motif close the N-terminus with a YGX motif.	4.20072e-11
NZ_LR698995.1\|WP_083551657.1\|1920844_1923079_-\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	9.17147e-83
NZ_LR698995.1\|WP_075577302.1\|1914725_1915910_-\|FprA-family-A-type-flavoprotein	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	4.54002e-134

>NZ_LR698995.1|WP_147556233.1|1925833_1926910_-|hypothetical-protein
MTHTSALEVFRRPDVQWRDAEAVVPCRASTRSEMEALLARSRLLASLAGPVELLVSAASARINNDLVRTHVMSAELPAGSVVELMPGVRAASPELLPVLMAPALTELELICLLSELLGTYAIAPQHEKGMWRRREPLTTPDRIRAFLARLGPVRGAGMVRRALGKACVSSASPRETKLSLRLGLPPRMGGWGLKVLSMNDPVEVRRIRDAMSVGVRKPDILLRARGRRGRGVAVEYDGRDHEEEPQHARDIERHNELVAMGFVEFIVARRQYKDLTYMDGLVARIRGELGLPPEMLEPGEAERGRALRQQLYEELELIDGVRWDGRARERARNAADEAGVTDGVDDGWNVVPVEAYGL
>NZ_LR698995.1|WP_162273017.1|1923075_1925613_-|response-regulator
MLAALSRMRLSIAAFVLFVALAVTGGLILRDTLLQNAYESNTALSRYYASETDSNLVTYEALLEFGTASIEARVYEDQPWDSIEEWASLYCERLRTVLGNESINLYGVVDGRVLAVGSEALGDAGDPTSRTWYQAAVEHRGEPVFTDVYEDAITGEPVVTVAEACPGVDAVLAFDVYPESFQFRFATSDLPEGVSYFLCDSAGVPLHAETDLPEKDVAPYLADLVSRIDAGEFEGHDANLTDSTGELRAVDYTRLSNGWYSIVTTPYSLILGGLGTVYAVFVAMGAAFLVALVAMAVRDRRRARALERTNETVRVLGNSYYAIYLVNYDEGTYEMIKGSDYVRERIPPRGPYPDLLRTAGEVIEENTFREFEESFSAENIRELVANRVRDYGGDFLRKFGERYRWVNVRVLYDESLAPEEVVLCFREVDATKQRQLRERHYLEQALDTAQGSLESKQAFFNNMSHDMRTPLNAIIGLTELARRDTSDAEKTADYLRRIDQSSHQLLNLINDILEISRMESGKVSFASERMDLAQTLRDTIAPFEMQAREQGKSLSARLDVPDPWVLGDPMRLSQVMNNLLSNALKYTRPGDSVSVTVTQEDRGDMDSYKIVVADTGIGMSEEYLPHVFELYAREQRFGTAQTVGTGLGMPITKSLVTQMGGSIEVSSTLDEGTTFTVTLPFSPAAPAEEPACAATPAVAAGMPEDGQVAALAGTRVLLAEDNEINMEISTELLSSAGVEVIQAWNGREAVDAFAASEPGSVDAVLLDMKMPVMDGCEAARAIRALARPDARTVPIVAVTANAFAEDVAATTAAGMDAHVSKPIDFTVLCRTLSGLVARRRGGDRA
>NZ_LR698995.1|WP_083551657.1|1920844_1923079_-|response-regulator
MSDEKDRAAADVPPEATPAPEAARPVYAIRRGVVALLALCAAVFAVVTFTAVGMSDATIDGVSGGFMEQMSAQIQLNFASETRLYRSELESTRLAVRASGETDRAAAHELFAQEASGHGFAYAAVTDLDGRTSVLLGPDLRIDDRDAFVRGVIDGTRTVTVGTSDEGESMLVFGEVIENRRVPGLNGAVLVAGVPFDEVVSALSLDVSATQVYTHIIRSDGSFVLNSNESLDADSYLGLLRDNEGRAGVDYDITADELSRVMDEGGTAFYVAVVGGERYASYLAPLEGTGWFIVSVLPYSVLHDPIDSLAWSLVAAAFVGCLAILVALLVVFVRYLRLLRFQMDELDRARAASDAASLAKSRFLSNMSHDIRTPMNAIVGMTQIARERADDAAAVSECLDKIAVSSAHLLGLINDVLDMSRIESGRMELASERVSLPEALDGVEAIVRTQAEARGVAFSVERELVRPVVMTDGTRLSQVLLNLLSNAVKFTPTGGEVTLRVSQEAAPVGEGRVRTHVWVRDTGIGMSEEFLGRIFDSFEREDTERVRRTEGTGLGMSIVKRIVDGMGGSISVASEKGHGSTFHVTLDLVPCEAADERGAEVDPASLAGARVLLAEDNEINWEVASELLGACGLELDWAENGRECVERFSASEPGRYDAILMDLRMPEMSGYEAARAIRSLDRPDARSVPIVAMTADAFAEDRQRARDAGMDAHVAKPIDVGEVLRVLARLVAARDGAGGGAHEA
>NZ_LR698995.1|WP_075577306.1|1919691_1920855_-|GGDEF-domain-containing-protein
MRRDDLPMSALRRAAARRRAYFTADSAQIVTSNLGSVGVAAAMALALVTLLSAVARVTYPPWEATAAHAAAFVASAAVLAASLLLRRRLSARPVASTAVCLAAEAALLALVVAIDATATHGMPGVFLQPAAIAITSVVVAPYALPLVVALGAEVALALLSAALKSPPVAQFDAFSCAIGMVVAVVVSQVTMHLRLRDFEARERLRQSSRLDELCGVYNKGALVAALREHLALAGPHVSGALFLFDVDRFKQINDTYGHYAGDEVLRAFGRALQLGFRTTDTVGRFGGDEFLVLAPSLVDERVIGEKVGRVRAAMREAGERIVGVPVTLSCGVVWASDCPVTYEAALRQADEALYEAKRAGRDRMVTRRYETEDERPARRAGDAEARG
>NZ_LR698995.1|WP_075577305.1|1918612_1919695_-|response-regulator
MTAAAGARHGTGRMLVVDDEEINRMILATLFEGHFEVEEASNGREALDALLANPSGYVAVLLDVMMPEMDGMEVLGRLAPTGLLERVPVFLITAERGSAVMEEAYRLGVMDFIGKPIVPYVVTRRVLAVVELFEARKRLSLTVEDQRAQLLERAQQIIELNRGMIESLSTAIEFRDGESGLHVRRIHDITRTILLETPFGEGLEEEDVDDIALASIMHDVGKIAIPDAILCKPGRLTAEEFEVMKTHTTQGADLLGRIPQMRSLGAYAYAVDIARHHHERWDGRGYPDGLVGDENSVWAQVVGLADVYDALTNKRVYKAAFSREESLRMIREGECGAFNPRLLACFFEIEPTIARLYEGA
>NZ_LR698995.1|WP_075577304.1|1918247_1918598_-|Hpt-domain-containing-protein
MRLEVLDAAGLDTADALARLMGSEALLARLLGKFAADENCARLVAAAEADDADAALEAAHALKGVSGNLSMTRLYELTSRQCELIRAGDWPAARALVGEVASAHGALVEAIGAALV
>NZ_LR698995.1|WP_075577303.1|1916050_1918126_-|elongation-factor-G
MAAKGSEKVKNVVLVGQGGVGKTMLAEAMLHLTGRTTRLGGHAGTKPTLDYDGEEGERGFSISTAIAPVIWEGTRLNVLDAPCYPDFVGDAYAAISACETAVFVVDAASGPGTITTRLWYAAEELSLARALFINRLDRPDADFDVAMAALQDRFGSNLGAVTIPMGSGEAFSGIIDVVHMKARHLEGGKPVVEDVPAEYAEAAEAARAQLTELVVEADDEIMMKYLEGEEVTQEELEGLLAKAIRERVFVPVFSGSCVREEGVISFMDAAVAWFPTMADFGRIPLVNGEQLDISEDDERPVVFAFKSLNDPQNGRLSFLKVLAGTITPGIELTNARTRKTERLGHLYQMCGKETTDVASAAAGDIVVVPKLEAMTGDTLSVTGKVEAAEFRFPNSLYRIAIEPDSRGTEGKLYAFLEKSADADPTLKVERDEDTGQTVISAIGEAQVSVLLDRLEDRAGITAHTVALKIPYRETIRRVASAQGRHKKQTGGAGQYGDCWLRIEPNPGAGYEFVDEVVGGHIPRGFIPAIDKGVQETMREGVLAGYPMIDVKCAVYEGSYHPVDSNEMAFKTAARIGFQKAVAQAEPVLLEPMAHLRITVPESYAGSVMGDVSASRGRVEGMEAGTGAAAGETTVVATIPYAEVTDYATRLRSLSRGTGEFEMEISGYEQVPHDIQQRLADDYAARRAAGEK
>NZ_LR698995.1|WP_075577302.1|1914725_1915910_-|FprA-family-A-type-flavoprotein
MLSAVQIKPDVYWVGALDWNEREFHGYTTEAGITYNAYLIMDEKVTLIDTAKSTFADELIERISSVVDPSRIDVLIANHVEMDHSGSTAAIKRLAPDCQIYCSAPQGVKNMTAHFGDLGYNGVKTGDTLCIGKRTLTFVQTPMVHWPDNMVTYDAYDKILFSNDAFGQHFASSARFDDENDLCEVMHQAHKYYANIVQPYRTQAAAAVKAVRGLGPDALDMICPAHGVIWRGHVEDILSAYEGFVSGEVAERAVVVYDSMWHSTEKIARALVDGFLAAGVPARLMDLKENHISNVMDAFMDSRYVCVGSPTLNSQMLPTVASFLTYMKGLSPKNDNRVGLAFGSYGWAPAGPKNVAAELEAAGFAMPVETLAVNWIPSEDQLSAAKDAVRGLMA
>NZ_LR698995.1|WP_075577301.1|1913606_1914617_-|hypothetical-protein
MKSLRIGFESALSFWRTVRLADHPIWTGVPEGRVYGTRELALGEQVERARDLCAADGPLDVVVPDVSSRLGRRGDVRSRVWAGPLLERHLLLVGDGISICRPVVVFVQLATLMDEISLAEVGYELVGNYALAKDSRRGFESDAEPLATMEELRAYASAARALGVRGAARAVRALGLMADNSNSPKESCVGILLALPRVRGGAGVPGFRMNVTIRLPEELADTLGQRTIVPDFSWPNGTVGEYDSDQEHLSPAARARDERKRRAFRSVGMDCITMTKGTFRSNAELNLLVGDLEGSLRLQRRPPTARILEARARLRERLFGPESEEAALEALHGKKG
>NZ_LR698995.1|WP_075577300.1|1911868_1913215_-|HlyC/CorC-family-transporter
MDVAISIVVTFLLTLANGYFSMSELAVVSAKRAVLEPEAEEGDRKARAALDLGSNSEQFLATIQVAITLVGFASSAFASTSLSDPLGSWFMSLGMPEGVAVPLAPVLITLAVSYLSIVVGELVPKRIALSDAERMAKSVAGPIRGFMHLARPLVWLTAKSANGISALLGIKSADERDSVSEEEIKYMVADADELSDQEKSMIHEVIELGDTIAREVMIPRVDMTAVEDTATLSEVLAIMRRTGYSRIPVYHESVDRVVGIAHIKDIISPILDEGRADDPVARHARSADFVPDTKDIIPLLSEMQSSHDQMVIVVDEYGGTAGVITIEDIVEEVVGEIEDEFDPDNKYLTQLSEREWLVDGRFSIDDAIELGWPVEDSEEFETIAGFVLDQADKLPHPGDVFVKDGYQFRVQSMRGRRLSMLRVIAPEPPADDAEGDAGGEKQPTPAKE
>NZ_LR698995.1|WP_075577593.1|1927463_1928831_-|putative-DNA-binding-domain-containing-protein
MDARDLAARISLGEGLMTEFKRCGGAPGQDVYETICAFANRQGGNVFLGITDKGDILGVPQNALRAVQRAVVNAVSNPELFNVSPVVETEAIEVNGLNVVRVWVPMGPAVYTFKGVAYDRIADADVKVVGVEQISQLYLRKQNEYSERRIFRYVSLEDFKEETLERARALATRRVPGHPWGSMSNEELLRSAKLFAKDRRTGDEGYTLAAVLLFGTDEVISDVCPAYRTDAIVRKENVDRYDDRITLSCNLIEAYPKLVDFAESALPDRFVVEAGQRVSARDIIVRELVSNLLIHREYISPFPAKLVIERGELRTENASRSIYEGRLTLSDFNPVSKNPNIAGVFSQIGYAEELGSGMRNLQKYSQAYGGKPAVLEDGDIFRASVPTTPISAARGVEGAYEAITILADRDGGITAAELAEYLNVTRRTAQRYIRQMLDRRLVVACDGWPHRYKPL
>NZ_LR698995.1|WP_147556235.1|1929349_1929619_-|hypothetical-protein
MKQSSEDASALDVDAVVSLKKIRSLKTDGSFPRHFYPTITRIRVTSSEMPLFSRPAATQHIAGVKVLKPAAPARHLRREEAAEDEQAFA
>NZ_LR698995.1|WP_147556237.1|1929605_1930562_-|hypothetical-protein
MIRELLSKGARAKHYAHSVAPNRLPWLLRFRAMAGDAIAAAILSSSAPWWVQKIPLLEVPPEFVPWVSVWIASLGGAVFVILWTLRRFYLKDSSLRVAPLFELMLFYRYLLQDEEKMDIIRRDDFLVDSVCNEACSRIADVFDALTGSSDVCCSIRLNMGDSDSPYFITRGRSSRTTVSREVYSVPVTASSRILVSLTEPDVLVNDVWVIPDIAQAVKDGVISKDYNLRNVDGLTGSMLVARLNYYLPSADGAADLMYGIIYVMSPIVGTFDERHVDYMKVVSCATSTILTEVLKSSASDIPVDPDDSADMGIEYEAE
>NZ_LR698995.1|WP_075577309.1|1930630_1931152_-|hypothetical-protein
MKKSNVLITAVIVVVSAFLLWLWYNLGFNHVDSPLDLVLSVVWWAIVVVGVVLVAKAEKTRQESVRTVYLGGGRLYNSETGVRMLSAGASVADSLAAVLAGLTYGFDREAAPDPDDKENPANWTHVVRTSKYEPARNDDGERKDETWEGEVVVVETGRTIPFTSRAALAQIIG
>NZ_LR698995.1|WP_075577310.1|1931168_1935539_-|Ig-like-domain-containing-protein
MNERHEGKHLRRQEAKKRWKTILAVFLSVVLVMQSSNIQAFADVLASGGSEGRDEVVMDPAAEDTGTQGEVTTPEETDTTDEQASSQDDAEQTVAETEENPVETTAQDTEATTPDGQSDQAQSEQAPAEETDTTVTLNVEVSAATLKYRAQDGTEKSVTSETDPKSVDVSNTLDFTFTVAPDDGQKVSSVAYAGAELAANESGEYTIAAADLTDGEKIVVTTEAAPTEEPAEDATPVEPEEATEPTEDEAATTEDASESETPAANNGTSTMAARAVDFTVEVGGTISINGSTDGWIPQHKWSVDSGDGQVRLANIDGQTVRVTGVSEGTVTLKHEYKATAAWNWEEEYFTVQVTPAPTVDITEESLQITLGDEGQLTATATPAGSSVTWSSSDERVATVDQNGLVTTHQTGVATITARNGSASDTATIYVVSPATYRLVYNSNYPSDAKKIVYENGNAGNIKLEDAVETNAVYTYEPGSRATIAGDMTLANYEFLGWSTDPNATEPDSAYDPGAEVTMESNLTLYAVWGNKIEIGNQTTVTVRYYKNQSGNSCVDKQTTAFRSWRNGQATYTFVLGNNQDTIESDSPNLRGWQHDGEYYAFNETITTSEYRAYGHNQIIIEVRPWFDNNATYAQFFVLKADNAAFGNAGSYYSVGTGSINSELFDSGSQNNVYPNGTEDKSNNISELIVSAPSPTQIASILNISLDEAQAVRWYVAKNQDDGYHVDGVIYRAGVYHNVRFIDTATGDVMASYVVEDMGTVYENQIPDTSSLEDFECWVDESGKRLESGDINLIGDDLTFYTKYVNKYNITASIVDNEGAPVEGAIVSPSTQSVKQGEQSEAISFDIPDGYKIEKITVNGQDQTGDNAGKTEYAYPAQTVNGDITIVVQVARTYKVSYSWSGLKGSNPWTDGEGVEHKATLPNDGAAYEVTAGETFEVDKTYAAGATFQNEYGTWTFSGWSTGDFEVTGDKEITGTWTIEEGDEATYAVKYSWSGLKGSNPWTDGEGVEHKATLPNDGAAYEVTAGETFEVDKTYAAGATFQNEYGTWTFSGWSTGDFEVTGDKEITGTWTIEEGDEATYAVKYSWSGLKGSNPWTDGEGVEHKATLPNDGAAYEVTAGETFEVDKTYAAGATFQNEYGTWTFSGWSTGDFEVTGDKEITGTWTLTHIDISGPEVTVNSPQDVPYNGTNQTWAPTVTDGEKVLVAGTDYEVTYSTSDRTNVTGTIKVTITGKGNYTGSVERYYQITPLTITVTPRDIRKTQGQADPTLTSDYSGYLRGETAGWTGALTREPGEAVGTYTISKGSLQLADNPAGNFLAQNYILVVNEGTFTIVATPVTPGGGDTPTPTPGGGGDGTPTPGTPATVTPADDTTTDEAAPEETIADDENALAAPTDTIGDDDTPLAAGAKDEDCWVHWLILLGMILSAVYFVGVGVRRRKFTSSLLGYEDKVLGNDRDNA
>NZ_LR698995.1|WP_075577311.1|1936606_1937542_+|hypothetical-protein
MGFSRKRGVAAAALACALALAACADGSPAASADGFDPGTTSGPAWSMPASALLAPFSADAASAGSPVIDASHASEGYVAASATSDARLKLQVASGDMSYNYDLPSDGTPIVVPLNMGDGAYRIRVMQNTSGNNYVELHAVDLDVTLESEFAPFLRPNVFCDYDDASASTAKARELAADAANEGDVMRDVCTWVASSITYDYDKAAELSGTSGYVPDPDETLASGTGICFDYASLSAAMLRSLGIPCKIITGYVSPDGVYHAWNLVYADGSWTSVEFSVRAGEWSRVDLTFAAAGAGELVGDGTSYTDRYVY
>NZ_LR698995.1|WP_075577312.1|1937552_1938638_+|type-II-secretion-system-F-family-protein
MSETLKGGREGRGTGTLPSSEVAAFCQGLATMLAAGIQLDEGLGLLGESAQGTPLAAVCRELYGRVSAGEPLSAAMAADGRFPGRALAALAAGERAGRTERTLRSLAGYYAEEARVMSKLRTAIGYPAALLCVMSVVLAFTVAVILPVFIGVYEDMAGTLTAGSGLAVSASLVVGWVALAVVALVTTAALVGVIASRGVRGQAAIVRLMGRLPFTRAAMRQLALSRFLATLSTCLSAGSDVDAAMSEAIRATDSAELRERLEPALASMTDVERGLGLAQAVAESGVLEPAQARMLSIGSRVGSAEAVLERLSEACFDEAVERVDHVIDAVEPVLAAFLTVAVGATLVSVMLPLIGMMGAVG
>NZ_LR698995.1|WP_075577313.1|1938638_1938968_+|hypothetical-protein
MTGRGETRARRAWPRVLAALAVAGTLALVAAPAVAGALREQSAASVRDAVLRAAAQCCAVEGSYPHTLSHLEEHYGLTVNHDDYAITYEAYASNVAPSVVVVPRYEHAP
>NZ_LR698995.1|WP_075577314.1|1938951_1939485_+|DUF4860-domain-containing-protein
MSTRLDQLLDAVGDARDADGRAVRGAGARHVFAVALLALFLLALLGAVGFGTSVYQRLNERSEAAEQARSPLGVIVNAVRATDAVGSVARAAGPEGDALVLVERLASGTYETRFFLSDGWLVEQYAVAGSPYDADAATRLAESSSFSFEEDDGLLTVSCDAGSARVALRSRAEGVAS
>NZ_LR698995.1|WP_075577315.1|1939481_1939865_+|hypothetical-protein
MSAGPRSRGAAAPWRGTAFLVEACLLLAVVAGAVVVFAALFARAGTEGARAERVARAVVAARDAAELFAADGSDAAGERRVGDLLVSVETSDDDEVAGLLRAVVVVRDAGGAELYRLETARAGGEQP

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Crispr_ID: NZ_LR698995_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR698995_4

1961551-1961627

Orphan

Consensus_repeat	Method
GGGCCGCTCGTGAATTCACGAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR698995_4

>merge|NZ_LR698995|4|1961551-1961627|CRISPRCasFinder
GGGCCGCTCGTGAATTCACGAGCGCACGCGCGCCCCGACTTTTGACGCGTAGGGGGCCGCACGTGAATTCACGAGCG

>NZ_LR698995|4|4|1961551-1961627|CRISPRCasFinder
GGGCCGCTCGTGAATTCACGAGCG	CACGCGCGCCCCGACTTTTGACGCGTAGG
GGGCCGCACGTGAATTCACGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR698995.1\|WP_075577340.1\|1968850_1969123_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_LR698995.1\|WP_157886239.1\|1962996_1963803_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|376877
NZ_LR698995.1\|WP_075577336.1\|1963816_1965097_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_LR698995.1\|WP_147556241.1\|1961655_1962945_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_LR698995.1\|WP_075577328.1\|1951070_1952150_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_LR698995.1\|WP_075577332.1\|1956278_1957820_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379084
NZ_LR698995.1\|WP_075577342.1\|1969685_1969976_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_LR698995.1\|WP_075577341.1\|1969165_1969645_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|273179
NZ_LR698995.1\|WP_075577331.1\|1955351_1956233_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180840
NZ_LR698995.1\|WP_075577335.1\|1960764_1961484_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_LR698995.1\|WP_075577339.1\|1967767_1968826_-\|DUF2232-domain-containing-protein	unknown	unknown	gnl\|CDD\|370773
NZ_LR698995.1\|WP_075577334.1\|1958921_1960664_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR698995.1\|WP_075577330.1\|1954778_1955240_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_LR698995.1\|WP_147556239.1\|1957925_1958723_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR698995.1\|WP_075577338.1\|1967208_1967733_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_LR698995.1\|WP_075577337.1\|1965344_1966727_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_LR698995.1\|WP_075577343.1\|1970248_1971295_-\|DUF4013-domain-containing-protein	unknown	unknown	gnl\|CDD\|379068
NZ_LR698995.1\|WP_083551672.1\|1953711_1954746_-\|class-B-sortase	unknown	unknown	gnl\|CDD\|320675
NZ_LR698995.1\|WP_075577329.1\|1952240_1953665_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223112
NZ_LR698995.1\|WP_075577327.1\|1950356_1950842_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|377139

Protein	Function_ID	Function_description	E-value
NZ_LR698995.1\|WP_075577340.1\|1968850_1969123_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	5.28106e-36
NZ_LR698995.1\|WP_157886239.1\|1962996_1963803_-\|DegV-family-protein	gnl\|CDD\|376877	pfam02645, DegV, Uncharacterized protein, DegV family COG1307. The structure of this protein revealed a bound fatty-acid molecule in a pocket between the two protein domains. The structure indicates that this family has the molecular function of fatty-acid binding and may play a role in the cellular functions of fatty acid transport or metabolism.	1.24732e-16
NZ_LR698995.1\|WP_075577336.1\|1963816_1965097_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_LR698995.1\|WP_147556241.1\|1961655_1962945_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_LR698995.1\|WP_075577328.1\|1951070_1952150_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	2.20603e-165
NZ_LR698995.1\|WP_075577332.1\|1956278_1957820_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	4.9905e-07
NZ_LR698995.1\|WP_075577342.1\|1969685_1969976_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	2.71591e-31
NZ_LR698995.1\|WP_075577341.1\|1969165_1969645_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|273179	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb). All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair].	5.36777e-42
NZ_LR698995.1\|WP_075577331.1\|1955351_1956233_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180840	PRK07105, PRK07105, pyridoxamine kinase; Validated.	7.21629e-69
NZ_LR698995.1\|WP_075577335.1\|1960764_1961484_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.36235e-47
NZ_LR698995.1\|WP_075577339.1\|1967767_1968826_-\|DUF2232-domain-containing-protein	gnl\|CDD\|370773	pfam09991, DUF2232, Predicted membrane protein (DUF2232). This family of bacterial proteins are multi-pass membrane proteins with up to 10 (2 x 4/5) transmembrane regions. The exact function of this potential pore molecule is not known, but in many instances it is associated with ABC-transporter-like domains, implying that it is part of a secretion system that uses energy.	0.000106742
NZ_LR698995.1\|WP_075577334.1\|1958921_1960664_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_LR698995.1\|WP_075577330.1\|1954778_1955240_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	3.08896e-84
NZ_LR698995.1\|WP_075577338.1\|1967208_1967733_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	5.89902e-54
NZ_LR698995.1\|WP_075577337.1\|1965344_1966727_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	9.1157e-176
NZ_LR698995.1\|WP_075577343.1\|1970248_1971295_-\|DUF4013-domain-containing-protein	gnl\|CDD\|379068	pfam13197, DUF4013, Protein of unknown function (DUF4013). This is a family of uncharacterized proteins that is found in archaea and bacteria.	1.00187e-13
NZ_LR698995.1\|WP_083551672.1\|1953711_1954746_-\|class-B-sortase	gnl\|CDD\|320675	cd05826, Sortase_B, Sortase domain found in class B sortases. Class B sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They can have radically distinct functions. Some members of this group attach haemoproteins to the peptidoglycan of the cell wall, while others assemble pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. In transpeptidation reaction, the surface protein substrate is cleaved at a conserved cell wall-sorting signal (Class B sortases normally recognize the consensus NP[Q/K][T/S][N/G/S][D/A] motif), and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical sortase B protein from Staphylococcus aureus (named Sa-SrtB) cleaves surface protein precursors between threonine and asparagine at a conserved NPQTN motif with subsequent covalent linkage to pentaglycine cross-bridges. It is required for anchoring the heme-iron binding surface protein IsdC to the cell wall envelope. SrtB contains an N-terminal hydrophobic region that functions as a signal peptide/transmembrane domain. At the C terminus, it contains an essential cysteine residue within the catalytic TLXTC signature sequence, where X is usually a serine. Genes encoding SrtB and its targets are generally clustered in the same locus. The prototypical class B sortase involved in pilus biogenesis is pilus-specific sortase C2 from Streptococcus pyogenes (named Sp-SrtC2) that anchors a surface protein containing a QVPTGV motif to the cell wall, as well as polymerizes the major pilin subunit Tee3/FctA and attaches the minor tip pilin Cpa. The linkage of Cpa to Tee3 by SrtC2 requires the VPPTG motif in the cell wall-sorting signal of Cpa. The family also includes SrtB enzymes from Bacillus anthracis (named Ba-SrtB) and Clostridium difficile (named Cd-SrtB). Ba-SrtB is thought to recognize the NPKTG motif, and attaches surface proteins to meso-diaminopimelic acid (mDAP) cross-bridges. Cd-SrtB does not play an essential role in pathogenesis. It cleaves short [SP]PXTG motif-containing peptides between the threonine and glycine residues and then covalently anchors the threonine residue to a nucleophile such as glycine or mDAP, but not to the peptidoglycan of C. difficile, suggesting a novel association of sortase activity with cyclic diGMP (c-diGMP)-mediated regulation to control levels of cell wall anchoring and secretion of putative adhesion molecules.	2.76724e-52
NZ_LR698995.1\|WP_075577329.1\|1952240_1953665_-\|amidophosphoribosyltransferase	gnl\|CDD\|223112	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism].	0
NZ_LR698995.1\|WP_075577327.1\|1950356_1950842_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|377139	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component.	2.9411e-60

>NZ_LR698995.1|WP_075577335.1|1960764_1961484_-|NUDIX-hydrolase
MPDTDKSPRLDDALDDMRESVAAFTYDGDRTNLDHLSGEPVRRSLVLGDDDPRDAALAERPLTEDVAWTGRIFNVDRLRVQLPDGRAAIRDVVRHPGAVAVVALTEDGRICLVRQYRTALGRVTVEIPAGKLAPGEDPLECAGRELLEETGMSAEKIAFLTTIATSDGFTDELIHVYMATGLEFSRSDPDADEFINVDLVPLEELVDAVLDGRIEDAKTVVGALICDAVMHRLTPEPEE
>NZ_LR698995.1|WP_075577334.1|1958921_1960664_-|ABC-transporter-ATP-binding-protein
MLKRFLTYYRGQLHLFVTDIAAAVTVAAVDLAFPQILRGLAGGLFTEGPDAILGVLAYVAVGLVAMYALRFVCRYFVIYWGHVMGARMESRMREDLFDAYVRQSFSFFDRNRSGDLMSRLVSDLFDISEAAHHGPEFLLIGVVEIAGSFVILSTINAPLTAALALIACLLVAYNVWANVRMRAVYTENRVRISGVNSRLEDALGGMRVVKGFAAEDAESEKFRASNDAYLDSKTRMYRAMGRYQAAIAVMMGALNTVVVVLGGWLIARGQMEPADLATYALYISLFTAPITQILDFTETFQKAIAGFRRFCEVLDEQPQIQDRPGARALRVSDGAISYRDVHFAYPDAKDAPGEKGEVIRGLTLDIRPGETIALVGPSGGGKSTTCALLPRFYDVDAGSVTIDGQDVRDVTQRSLRESIGLVQQDVYLFDGTIAENIAYGCPDATAAEIRLAARRANIAEFIDGLPEGYETQVGERGSHLSGGQKQRIAIARVFLKNPPILIFDEATSALDNESEQAVQESLEELSRGRTTLVIAHRLSTIRGADEIATIEGGRVVERGTHEELLARGGTYARYYEMQFA
>NZ_LR698995.1|WP_147556239.1|1957925_1958723_-|hypothetical-protein
MFGRHVEPRPQRGALSADEAEQLFSTVDHSGHSDEERARRQRAHRREKGVSVDVDPLSGDDPSGSDVSRVITRTAVTFVLTFLVLVVAAQVVFGVIRRLNTANLADVASVRTVAGALAGGVEWGDGFTQFPADFTVQEADENTGRIEVSVVDTSSSSALECFSSSQVQATALSVNALLNPNIDTVVYHVSVHVDADGNMQQSTLFGFLKPTGDVTSFMTFVWKKTQSADGVNFSCTITGIDESVQGELRDQVTTSFTPVQTTIEQ
>NZ_LR698995.1|WP_075577332.1|1956278_1957820_-|zinc-ribbon-domain-containing-protein
MRCKKCGEELPESARFCYVCGAPVEEVPAPRRLEEPLDPLSAGAVPLVPLAPPPRAYTLEPRARRAAARGDLRSKLPSIRPQEPAVIQEPAPAQETADQAEGADLSEQTERFEQVEQVEQTGRPDAAEGAVEPRVEAADEGEKDAPAPAAELSEPTEPRPAPAADVAKTASDLLGKAGKGLASAGRQLRKGGRTVAEGFEGSRVPTFALVAGIAAVALVAVSALVLLGTSWLGPFAPDDAPAPVVQPPSDGSIPPLEADDEEKQEEEEDETLPEGAPETRDALGDYSWEELAQIAALVADASSDDEGVRIAADYNLCDADGRVDETQTKDLELSNGTTVPVAVAGVRSDERSDGSGVAGLTFVTRASLGKQAYNPEGGSVSWEDSPLRSWLNQSVAAELPEGLADLIVPVTKLSNDPAGSQCETSDSLWLLSYSELCGTPPSGRAAEGAQYRLFFDQGVNGLATSALVLADDYWWMRGASSDGSYQMTVTPEGDPNYARNPVYEFDVIAGFCL
>NZ_LR698995.1|WP_075577331.1|1955351_1956233_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MNNASSLCLYQREGGYLPRVAAVHDLCGYGKCSLGIAIPVLSAAGIDVCPVPTSLFSAHTRFPRFYMHDTTPMLGDYLDAWRDEGIELDGVYSGFLGSAEQVDAILRLYREYPNALRLVDPVMGDGGSKYPTYTDEMCEATRGLVDGADVLTPNLTEASILTGIPYESQDVDEAYVRRITDALLGQGAKSVVVKGVVHAGEKVIRNYVAVADGDGTPEEVSGELLPYMLHGTGDLFASGLVAAIYAGRDLLSAVGFASELVRHAMQITPEQPDYQVRGVSFESVLGDVTALLG
>NZ_LR698995.1|WP_075577330.1|1954778_1955240_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MADQPLVGIIMGSKSDLPTMEACTKQLEELGVPYELVIASAHRNPDKVHEWAGTAAERGLRVIIAAAGKAAHLGGVVAAFTPLPIIGVPMKTSDLGGMDSLLSMVQMPSGVPVACVAINGAKNAAIYATQILGATMPEYRDKIVEFKRQMAEA
>NZ_LR698995.1|WP_083551672.1|1953711_1954746_-|class-B-sortase
MASHFRQPEDGPERRRVGGNPRTRLTTRRGGDESYHAPEGNPHAADTPHSSAAHYIPVVSGEPVDRRRRRSHFAETDPYDLSGRRSRDPRKRAGRIVSVVLFVVGFALIATAAGIWIFNQWRYHQQDVINEELATYADVSDNGTTPPQVDWDGLKAVNDEVVGWVQIPGTVVNFPVYQASDNEKYLSLGGDGQSSLGGAIFMDYENTAPGMVDGQSLIYGHHLRNGSMFKAVSDMVDQGMFDGVSTVWYVTEEATYELTPLLIYQTDASDENARRFVFESDDELRAYLSDLLGRAVAESPEAEATIAQTSHVLTLCTCNYDYGDDGRTLLVCAPKIEAASEGAE
>NZ_LR698995.1|WP_075577329.1|1952240_1953665_-|amidophosphoribosyltransferase
MSENLHEECGVFGVWAPGRDVARITYFALRALQHRGQESAGIAVGNGHTVLVRKDLGLVAQVFSDADLSAMPGKVACGHCRYGTAGAKGWESAQPHLSTINDVIIALAHNGTLVNFDVLRRELIEMGIPFRSNTDSEVAAKLIGYFTQRGGRLRSGIAHTMRMLEGGYAIVLVRENALYAFRDPHGIRPLVLGRLGDDGWVVASETCALDISGATFVREIEPGEIVRISDDGIRSERGCPAEERANCIFEHVYFSRPDSVARGSSFYLMRHNMGRRLARETPVEADLVISVPDSGTPAAEGFAQELGIPFGTGLIKNRYVARTFIQPTQELRQMGVRLKLNALPDVVRGKRLVMVDDSIVRGTTSRQIVRMLKAAGATEVHVRSASPKVVWPCFYGIDTGSQDQLIAARMSLEEIRAHIEADSVGFLSIEGLLDCVPPDGYCTACFTGSYPVEIPRAYWEERFLPGFEPDQIPV
>NZ_LR698995.1|WP_075577328.1|1951070_1952150_-|phosphoribosylformylglycinamidine-cyclo-ligase
MAENTKHVSYADAGVDTAEGARAVDAIKAAVATTSRPEVIGGLGGFGSCFSAAALKGMEDPILVSGTDGVGTKLAIAQLLDRHETVGEDLVAMCVDDIVPMGAEPLFFLDYVAIGKLRAEHVAKIVGGIAEGCRKSGCALVGGEMAEHPGVMAADDYDLAGFVVGVVDRPKLLGPELVREGDVILGLPSSGIHSNGYSLVRKVAIEGRGVEELETPLDELGGESLADAVMRPTRIYAGQLLAALRAGAPVHAMAHITGGGITENLDRAMPEGLDALVYRGGEDGPAWDVPPVISYMIRAAGLTLEEAYRTFNMGVGMSVICAPEDVERVRGLLAEQGLESFVMGECVAGTGRVVYDDVR
>NZ_LR698995.1|WP_075577327.1|1950356_1950842_-|PTS-sugar-transporter-subunit-IIB
MEKIAHVRIDDRLIHGQIVHAWITSVGAGTIVVADDAAAKDELRKSLLRMATPKGVRLKVLPVAKAAKYLLDPETDVTKVLLILRDVEGAIALVDAGVVPDEINVGNVSAAPGKTQYFKSVFLDEEDIRRFEQLRERGIALEVQVVPTERKEELFHLIGRK
>NZ_LR698995.1|WP_147556241.1|1961655_1962945_-|phosphoribosylamine--glycine-ligase
MKKKVDILLLGSGGREHALLAKLAESPRAGRLYVAPGNGGMDVMAEKVAGLDAESPVEVAEWARAHGIGLVVIGPEAPLVAGVADAVRSAGIACFGPNADAAQMEGSKKFAKQVMSRAGVPTAAYRTFTDEESCADYVRRVGAPIVVKADGLAAGKGVIVAKTTEEALAGVRECFSGAFGEAGATVVVEETLDGPECSLLALTDGTTVVPLATAQDHKRALDGDLGPNTGGMGVYSPVPEHLVSADQLAAMVEIERKVVAELSEEGVTYSGCLYGGFMLTSEGPKVLEFNARFGDPETQVVLPRMRGDLVDLFLACDDGTLSEDMVTWDDDWAVSVVLTSAGYPGAYEKGKVITGIERAEALEGVTVYHAGTALAEDGSLVTAGGRVLDVTAVAPTFEEARERAYAACDLIDFEGKTYRSDIGMRAVKR
>NZ_LR698995.1|WP_157886239.1|1962996_1963803_-|DegV-family-protein
MAEKDYAIVCDETSDLPLSFLERAGVVPLRLDDARDAAGTLGRVYRDLAGRGFPQVISIHSAALFSPVVDGAKIAAEACADVCEVSVVDSGSASAATGMLVDRAARYRHLDVPAPEAAAALAELAAHVRLLVVPAASAPLSARRRRTPRAGLIGRAAASLRMRVTGERGLYLLARGELTQLARGNAPAALTGRLARAVATVAGNEGPLVHALAEAGDVRSLRALERALEEEGVGSSCLGTVRATPLSREVVGAGAVAAAIAPHAAYWR
>NZ_LR698995.1|WP_075577336.1|1963816_1965097_-|adenylosuccinate-synthase
MSASVLVGTQWGDEGKGKVTDLISGDFDVVCRYAGGANAGHTVIANGKKLALHQVPSGVMYEGTYPVIGNGCIVDPEILLQEIDMLAEQGISADRLKISGNAHIVMPYHKDLDGAHEKKLGKNLIGTTKRGVGPCYMDKMNRTGLRIQDMLDEKIFRQKLESALAYTNPILEKVYELPTYTVEQICETYLPYAERIRPYIVESSLFLNEQLEAGKNILFEGAQATMLDIDHGTYPFVTSSNCTAGGAVTGSGVGPTNIDRVLGVAKAYLTRVGSGPFPTELFDEVGDKLGEVGHEFGVTTGRKRRCGWYDAVVVNYAARVNGLTDLAITKLDVLGCLDEIKVCVAYECDGVEYRTVPEHQSVFYHARPVYETLPGWKCDISGIRNFYQLPREAKDYIDFLEQLAGVRVSIITVGPDREQTIDRYWH
>NZ_LR698995.1|WP_075577337.1|1965344_1966727_-|replicative-DNA-helicase
MSDYDVNPTRMTVEGGMAMPQDAEAETSVLSAMMVSVDVLQECLIALEPDDFYQPSNRTVFVAMREMFDKNLPIDTISLADYLKSTGELDRVGGRSFLLGLGTNSLAFVGWRRHVEMLHRDTTLRKMINAAAQISALAFDAPEDTKEVVDKAERLLLDVTNRDVRSTELSLEQIMGELYEELGANAANKDRVLGVSTGFPRIDETLAGLRPGQMIVIGARPGVGKTSFALNLATNAAFAGASVAFFSLEMSHVEIAQRLLAANARVGLHDIRSANIRNEQWPQILQATNELAQLDIVIDDTPGTTVTEIRAKARRILHGKPLGLVVVDYLQLISPPAGQRRADSRATEVSEMSRGIKIMAKDLGVPVVALSQLNRTVENRTGKRPQLSDLRESGSIEQDADIVALLDRSMNEDEAARDDRPPMNETTFIIAKNRSGALADIPLTFLPGSTKFVEVDSFHD
>NZ_LR698995.1|WP_075577338.1|1967208_1967733_-|50S-ribosomal-protein-L9
MKVILLSELRGKGGEGDVVDVAQGFAENYLFPNKIAQPATPGNIKQLEERRHNIEKREAERIAAAEATKAALDGKSVTVDAKIGEEGQLFGSVTPAQIADAIQAQLGLEVDRKRVGRGNNIKTSGKHAVEVNLYREITATVNVLVGVTEEEPAAEAAEAEADEAVEEVAEESAE
>NZ_LR698995.1|WP_075577339.1|1967767_1968826_-|DUF2232-domain-containing-protein
MAGWTNNDRPPVPQGVAGAARQERGIVPRAQAGGQGEQNARPSLLAGVFFCALGGAVASSTLSFVGPAFVGYGYFAVAPAGGTRARVSCLAAALVPAVALALAGGVSAVVSSVVACLAALAVSELATAGRLTPGALCAAVALVALALIGADELAALSSGSTLSAGIGAMLDTYQRQIDALTGVGEQVDAVFAALALVWPVAYVVAAGALCVSALLGALVASRAYGAEAARLPRLADFDLPLWVVAVFVASIAGIALALSVDGTLSRVALAVSANVALSVRFALAAQGLAVLAWVARDKGIGPLGRVLVGVVALYLEVQFVVLTIAGLVDVWANFRHLERGGRPGASGQAMQD
>NZ_LR698995.1|WP_075577340.1|1968850_1969123_-|30S-ribosomal-protein-S18
MAQQKQDFQRQPRRKYCQFCKEGTEYIDYKDVQLLRKYMTDRGKIKPRRVTGACTQHQHDIALAIKRAREMALLPYTVPVVSSRGGRNRG
>NZ_LR698995.1|WP_075577341.1|1969165_1969645_-|single-stranded-DNA-binding-protein
MSINRVNISGNLTRDPELRATGSGTSILSFGVAVNDRRRNPQSGEWEDYPNFVDCVVFGARAEPLSRFLSKGSKVAVEGKLRYSSWETKDGQRRSKLEVVVDEVEFLSSRNQQGGGAPAFQQEQAPRYAAPAPAASQPTYAPPVQTPPSAEVYDEDIPF
>NZ_LR698995.1|WP_075577342.1|1969685_1969976_-|30S-ribosomal-protein-S6
MKAYELLYFVDPTCNEETRAAVMKRIEVALGETGKVDSVEDWGKRKLAFEVDDLTEGDYTLINFHADPTVIAELDRVLRINDAVKRHMIVRRTDKE
>NZ_LR698995.1|WP_075577343.1|1970248_1971295_-|DUF4013-domain-containing-protein
MNDAELEGFRPNRYFARSWALLTRDRGWIKPVLVMFAALLVPVVGMLGVMGYVVEWARLTAWGVNAAPKQKSVRVGACIASGWRVFVVTLVWNLGSSLVTAVLGIVPLIGPLLAFVWMVCSLFLGIVIMVAALRATIYQKIVAGLRVPTVWQMVRSDIGGLMRILGMQIAAAAVLWLVSAVLVLLALVNVVPQLIYFADYVAEFDAIMSASTRMAVFFQIIVTVLSTMGPWMVVLSVVSGICGIVMMMLGYTATGLWMRQFNVAAWGRDEDPLPGAAQQAQPKAPAAAEPWQTAPTESAPSEPRPTEPAAPDPSPVDAAEPEPFSAGPILLGPVTTDPDDSPEKDDPQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR698995_3	3.1\|1927054\|29\|NZ_LR698995\|CRISPRCasFinder	1927054-1927082	29	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	742928-742956	7	0.759
NZ_LR698995_1	1.1\|457303\|32\|NZ_LR698995\|CRISPRCasFinder	457303-457334	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	147348-147379	8	0.75
NZ_LR698995_2	2.1\|912178\|30\|NZ_LR698995\|CRISPRCasFinder	912178-912207	30	MT522002	Mycobacterium phage Topanga, complete genome	44182-44211	8	0.733
NZ_LR698995_1	1.1\|457303\|32\|NZ_LR698995\|CRISPRCasFinder	457303-457334	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	335834-335865	9	0.719

1. spacer 3.1|1927054|29|NZ_LR698995|CRISPRCasFinder matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 7, identity: 0.759

acagtttttggcctcaaagccgacaagaa	CRISPR spacer
cccctcgctggcctcaaggccgacaagaa	Protospacer
 *  *. .*********.***********

2. spacer 1.1|457303|32|NZ_LR698995|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 8, identity: 0.75

cccttttgaccgattccgagcgcgatcacatg	CRISPR spacer
cccttttgaccgcttcccagcgcttaagcagg	Protospacer
************ **** *****    .** *

3. spacer 2.1|912178|30|NZ_LR698995|CRISPRCasFinder matches to MT522002 (Mycobacterium phage Topanga, complete genome) position: , mismatch: 8, identity: 0.733

ggtcgcttcgcgttgtcgaatcgggggttg	CRISPR spacer
cgacgcttcgcgttgtcgaagcggaccgtc	Protospacer
 * ***************** ***.   *

4. spacer 1.1|457303|32|NZ_LR698995|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 9, identity: 0.719

cccttttgaccgattccgagcgcgatcacatg	CRISPR spacer
gcatgctgaccgaatccgagcgcgattaccgc	Protospacer
 * * .******* ************.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

979540 : 987221

Streptomyces_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075576563.1\|979540_979987_+	dUTP diphosphatase	A0A2L1IVN2	Streptomyces_phage	1.5e-27	47.1
WP_075576564.1\|980062_981376_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.5e-49	32.6
WP_075576565.1\|981448_982711_+	uracil permease	Q9KX94	Enterobacteria_phage	2.5e-75	39.8
WP_075576566.1\|982830_983778_+	FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	3.6e-50	37.6
WP_075576567.1\|983886_985476_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_083551496.1\|985479_986595_-	C40 family peptidase	B5LJD6	Mycobacterium_phage	1.8e-08	40.8
WP_075576569.1\|986687_987221_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.8e-22	43.1

DBSCAN-SWA_2

1898356 : 1905637

Micromonas_pusilla_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075577289.1\|1898356_1900147_-	thiamine pyrophosphate-binding protein	G8DDL3	Micromonas_pusilla_virus	1.7e-85	33.5
WP_075577290.1\|1900148_1901000_-	NAD-dependent epimerase/dehydratase family protein	M1I5F1	Acanthocystis_turfacea_Chlorella_virus	1.4e-05	23.3
WP_075577291.1\|1901002_1902160_-	LegC family aminotransferase	A0A2K9L0G1	Tupanvirus	2.9e-25	30.5
WP_075577292.1\|1902175_1903156_-	SDR family NAD(P)-dependent oxidoreductase	A0A1V0SKV4	Klosneuvirus	3.9e-23	28.6
WP_075577293.1\|1903195_1904536_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	1.2e-46	33.2
WP_075577294.1\|1904536_1905637_-	CDP-glucose 4,6-dehydratase	J7Q7J8	Aeropyrum_coil-shaped_virus	2.0e-12	26.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR698995

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection