CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR699001	Akkermansia muciniphila isolate MGYG-HGUT-02454 chromosome 1	3 crisprs	DinG,cas3,cas2,cas1,cas4,cas5,cas8c,cas7,DEDDh,RT	0	12	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR699001_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699001_1

977720-977802

Orphan

Consensus_repeat	Method
GTTTCTCCGGGAATGGGTTCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR699001_1

>merge|NZ_LR699001|1|977720-977802|CRISPRCasFinder
GTTTCTCCGGGAATGGGTTCCGCGTTAGGGATGGACTCCGCCAGGGGAGCGGAAGAGCCTGTCTCTCCGGGAATGGGTTCCGC

>NZ_LR699001|1|1|977720-977802|CRISPRCasFinder
GTTTCTCCGGGAATGGGTTCCGC	GTTAGGGATGGACTCCGCCAGGGGAGCGGAAGAGCCT
GTCTCTCCGGGAATGGGTTCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699001.1\|WP_102734531.1\|964818_966651_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_LR699001.1\|WP_012420649.1\|973512_974757_-\|NADH-dehydrogenase-(quinone)-subunit-D	unknown	unknown	gnl\|CDD\|223722
NZ_LR699001.1\|WP_022198759.1\|971447_972848_-\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|224806
NZ_LR699001.1\|WP_102734535.1\|981880_984484_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_LR699001.1\|WP_012420648.1\|972881_973463_-\|NAD(P)H-dependent-oxidoreductase-subunit-E	unknown	unknown	gnl\|CDD\|376507
NZ_LR699001.1\|WP_012420644.1\|967756_968320_-\|NADH-quinone-oxidoreductase-subunit-I	unknown	unknown	gnl\|CDD\|235637
NZ_LR699001.1\|WP_162000104.1\|991080_992901_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_LR699001.1\|WP_022198758.1\|969658_971395_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273904
NZ_LR699001.1\|WP_161994097.1\|985136_986996_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|376788
NZ_LR699001.1\|WP_012420642.1\|966674_966992_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
NZ_LR699001.1\|WP_128153899.1\|975347_976535_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_022198775.1\|987374_987986_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_102734532.1\|967017_967728_-\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|235844
NZ_LR699001.1\|WP_022198777.1\|989485_990922_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132932
NZ_LR699001.1\|WP_161994096.1\|984504_985044_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|214872
NZ_LR699001.1\|WP_102733509.1\|980639_981500_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NZ_LR699001.1\|WP_022198766.1\|979842_980448_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_LR699001.1\|WP_012420645.1\|968354_969623_-\|NADH-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl\|CDD\|235692
NZ_LR699001.1\|WP_102735003.1\|978285_979818_+\|putative-Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|369349
NZ_LR699001.1\|WP_022198776.1\|988100_989459_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|273453

Protein	Function_ID	Function_description	E-value
NZ_LR699001.1\|WP_102734531.1\|964818_966651_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_LR699001.1\|WP_012420649.1\|973512_974757_-\|NADH-dehydrogenase-(quinone)-subunit-D	gnl\|CDD\|223722	COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion].	0
NZ_LR699001.1\|WP_022198759.1\|971447_972848_-\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NZ_LR699001.1\|WP_102734535.1\|981880_984484_+\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	2.07536e-07
NZ_LR699001.1\|WP_022198766.1\|979842_980448_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	5.37356e-93
NZ_LR699001.1\|WP_012420644.1\|967756_968320_-\|NADH-quinone-oxidoreductase-subunit-I	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	9.56387e-38
NZ_LR699001.1\|WP_162000104.1\|991080_992901_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	4.83894e-177
NZ_LR699001.1\|WP_161994097.1\|985136_986996_-\|4-alpha-glucanotransferase	gnl\|CDD\|376788	pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase. These enzymes EC:2.4.1.25 transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan.	1.07116e-116
NZ_LR699001.1\|WP_012420642.1\|966674_966992_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	1.74907e-35
NZ_LR699001.1\|WP_022198758.1\|969658_971395_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|273904	TIGR01973, NADH-quinone_oxidoreductase_subunit_G, NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes. [Energy metabolism, Electron transport].	1.29394e-112
NZ_LR699001.1\|WP_012420648.1\|972881_973463_-\|NAD(P)H-dependent-oxidoreductase-subunit-E	gnl\|CDD\|376507	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin.	2.95701e-52
NZ_LR699001.1\|WP_022198777.1\|989485_990922_-\|hypothetical-protein	gnl\|CDD\|132932	cd07021, Clp_protease_NfeD_like, Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cleaving hydrophobic substrates. Difference in oligomeric form and catalytic residues between 1510-N (forming a dimer) and ClpP (forming a tetradecamer) shows a possible functional difference: 1510-N is likely to have a regulatory function while ClpP is involved in protein quality control.	6.23938e-58
NZ_LR699001.1\|WP_102734532.1\|967017_967728_-\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	9.74426e-27
NZ_LR699001.1\|WP_161994096.1\|984504_985044_+\|autotransporter-domain-containing-protein	gnl\|CDD\|214872	smart00869, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.	4.48221e-17
NZ_LR699001.1\|WP_102733509.1\|980639_981500_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	9.16925e-44
NZ_LR699001.1\|WP_012420645.1\|968354_969623_-\|NADH-quinone-oxidoreductase-subunit-H	gnl\|CDD\|235692	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH.	1.88695e-108
NZ_LR699001.1\|WP_102735003.1\|978285_979818_+\|putative-Na+/H+-antiporter	gnl\|CDD\|369349	pfam07399, Na_H_antiport_3, Putative Na+/H+ antiporter. This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown. Many members carry 11 or 12 transmembrane regions, suggesting that they might be transporters. One family member, UniProtKB:Q821X2 is classified by TCDB as being an NhaE type of Na+/H+ antiporter.	0
NZ_LR699001.1\|WP_022198776.1\|988100_989459_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|273453	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO. Members of this protein are the methylthiotransferase RimO, which modifies a conserved Asp residue in ribosomal protein S12. This clade of radical SAM family proteins is closely related to the tRNA modification bifunctional enzyme MiaB (see TIGR01574), and it catalyzes the same two types of reactions: a radical-mechanism sulfur insertion, and a methylation of the inserted sulfur. This clade spans alpha and gamma proteobacteria, cyano bacteria, Deinococcus, Porphyromonas, Aquifex, Helicobacter, Campylobacter, Thermotoga, Chlamydia, Streptococcus coelicolor and Clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.39611e-153

>NZ_LR699001.1|WP_128153899.1|975347_976535_+|hypothetical-protein
MDSYLYWNPRLGEMAAFFITSAPRLVWTVLNPVFVLALVLGLYVLALGRMPNLRRECGAWTWLFALSMFVSAGVTVYYVCLTRAGSMNYVWTGCLIVWFMNIYRTRWGKRITSPRWGLSSGCLIYGIFCGACNEGATIGMAAAFCIMAAVGMLRDRRVGAYVWCGFAGVALGGLFLFAAPGLYSRLGHDLGASEVLRKGGFCAYAESFGILLYYHARMLCKIYAVSAVLTGFLLFSGTERCREVIRKEKESFFYILFLLLLGGIMSVCYFPVCIPAHHVQFVSSLPVLAASTVLFSVLYRNEIMVRGLRAVTVCLAGATLFFGVVFTLEYYHVGSQAFQREELIHKAFQEGNLEPEVPSISPLFFEGKVSGTDGNWGGPDTNRRFGIRKLVVKKP
>NZ_LR699001.1|WP_012420649.1|973512_974757_-|NADH-dehydrogenase-(quinone)-subunit-D
MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQYNQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREKIHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGITGANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPDGPINMVDTKGTLPEKKKVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPAILGSFDFVMGECDR
>NZ_LR699001.1|WP_012420648.1|972881_973463_-|NAD(P)H-dependent-oxidoreductase-subunit-E
MSDYAENAIDATIAHQPSPGERFYPAFEVTPELDAAASEYVTHYPEGKQKSAVLPILHEIQKKFGFISGDAIAWVGEKLNISAAHVLGVVTFYPGLRQMCPGKNHIRVCRTLSCAMAGADSLFDAICTRLGIDKNGIDHHHPIGVSPDGLWSVEGVECLANCGFGPNMMVNDLLYEKVTPEVLEEVIAKYQTA
>NZ_LR699001.1|WP_022198759.1|971447_972848_-|NADH-quinone-oxidoreductase-subunit-NuoF
MSITYLPGKEPHPRETRRILKNVNREGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGFPTGVKWTFIPPNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQAYIYMREEFPIAAEIMLKALQEARERGFLGSNIQGSGYNLEIHLHRGAGAYICGEETALLNSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEAYSQEGAKRSPGTRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDGRQFKAVIPGGSSSKVMRTDAEYKVQNPDGTMGKITFFDIPLDLDSIAQHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAHESCGQCTPCREGCPWMMKLSTRILEGKAAPSDVDLLIEVANQIEGKTVCAFGEAASWPTQAMVSKFKEEFVALTDPFNACLPHTEEGREQNRFLTR
>NZ_LR699001.1|WP_022198758.1|969658_971395_-|molybdopterin-dependent-oxidoreductase
MSEEASKLPKDIAAAEGKVNVQINGTWHRFPRGTRIADACRSVGVPIPCFCYHPKLAVAGSCRMCMVEQGMPPRLAPGQTPSYDENGYQRIQWMPRPIISCANTVAENMGIRTDSPLASEARRGVMEFLLTSHPLDCPICDQAGECKLQEYSNDYGQVEGRFEEKKTKKGKNLSIGPRVNLDQERCVLCGRCVRFMRDIMHDEVLTMSQRGTFNAITVYPGRELDSNYSMNTVDLCPVGALTSKDFRFKMRVWFLKETKTIDVDCGTGTNITLWTREDKVYRITPRQNDAVNSCWMPDSHRLNYKYINAETRIPQPVIRTDAEAPHRPSTWEPALASAAEAVKRIAPNQLAIIASGRMTNEELYMVRHLAAQIGTDMVDIVPRMGESDGMLISADRNPNTNGARLVLDIEPGSRLDAIREGVRSGSIKGILSLGEDLISPEAGFTAEDLDKLDYLFMTAHSANETARHADLVLPGVTYAEKFGTMINVTGRIQRLNRAIQPIGYARDDWQIFRDITLLLGGNPALKDFNSALDILTAMSTEYGALNGVSWGSIGDGGQPILETGVTIPVVEREKNQGR
>NZ_LR699001.1|WP_012420645.1|968354_969623_-|NADH-quinone-oxidoreductase-subunit-H
MIDSILTFCDEVLSNPVWFYIITLLIKIVICFAITILFIPVCVYIERRVAAWIQDRVGPNRAGIPLSIFRRFGMKSDLPFKKTLDYFGLPHDGKIANLCRFFRLDRDIPIFGLVQPMVDGGKLFLKQDFTPPFVRRVYFWIAPILVLAPPLMTAAVVPFAGDLQTSYGNVNMAVANLSVGPLWMFAISSLSVYGLVLAGWSSNSKFPFLGGVRSSAQMISYEISMGLSIIPVLMIYSTLDLSNIVEYQAANGWLLLPVWGEGLSWQRWILLVPVAISFIIFLTSIFAEANRTPFDMSECETDLVGGYHTEYSSMKFAQFFMGEYAAMVVGSSLVITLFLGGWSIGFGLDGWLNENVANWVAVICQLIAYVLKLLFFAFFFVWVRWTLPRFRYDQVMKLGWMVFFELAVINIFLTAAILYFVK
>NZ_LR699001.1|WP_012420644.1|967756_968320_-|NADH-quinone-oxidoreductase-subunit-I
MAFKTIKRPKISLGERFYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPEARWDKHLPKYYRGAPVLVKGEDGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKAPREFQIDMLRCIYCGMCEEACPEQAIFMSHNYLFTPTDKTQAIHNKAKLYELGGTRKGLVNKWNQYK
>NZ_LR699001.1|WP_102734532.1|967017_967728_-|NADH-quinone-oxidoreductase-subunit-J
MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAGAIMVLFAFIIMLLNVKQETSPFSRPFSVAIGVIIACLFLGQLIGIIYSLPGAKETHRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACSLHNNGAPSVILPPLSPQCSAHLYPEGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK
>NZ_LR699001.1|WP_012420642.1|966674_966992_-|NADH-quinone-oxidoreductase-subunit-NuoK
MIPLTHYLILSGVLFAIGLMGVIVRRDIIVIFMCLEMMLSAANLSLVAFSRAQGTMGLPNYDGQALSIFILTIAAAEVAIGLALIVSLYRARRTASTQDLNTLKD
>NZ_LR699001.1|WP_102734531.1|964818_966651_-|NADH-quinone-oxidoreductase-subunit-L
MFNIDIQYTWLLLFLPLVVAAFDWFLLTKRPDVAALTSTFSCLATFVLSLGLLDRTGSDSFSWLPISDIFSVDLGFVLDPLSSRMMLVVTGIGLLVHVFSLAYMADDKAKTRYFACLSLFMFSMTGIVLANNIAMTFIFWELVGLSSYLLIGHWYTRDTAANAAKKAFICNRVGDFGFLIGILTLWALTNTLDFSLMEIPAGISENLLNITVLCLFCGAVGKSAQFPLHVWLPDAMEGPTPVSALIHAATMVAAGVYMMVRVQYSIGIEAFPALACNVIAGIGAITAVIAAFMATQQNDIKRVLAYSTLSQLGYMVMALGLLAGEAAMFHLFTHAWFKALLFLGAGAIIFACHHEQDIWKMGGIMKRMKLTSLTFIIATMALIAIPFTSGFFSKEAILEAALRKNPVFFWIGAGVALLTTFYMMRVIFVVFFGKSRSHSSEHASEVGGLMLVPLLILAVLALISGYGFIADRLVPFNGFVSESFHMGMPFYVSMGALVLGILLAAAFYAGSPASDKLSGNAVSRALANRLYIDLFYDKVLVRGVQGVLAAIIDFMDQFIISGLIVGGLARLTAAIGSLLRRLQSGNMAAYTALFGIGLLLVVYFTVFYSC
>NZ_LR699001.1|WP_102735003.1|978285_979818_+|putative-Na+/H+-antiporter
MGAPAGEASARTAAPAYPAAEVGGESQYSHFPIPLNQYNPVPPDASLYQVLSERNKQSGGFNLAVTLVFFGAIIHTFLAGRFERYSHKLALRYKEKLKETNFRVMHPEERLPVSFASAIFHFLGEVEAVFGIWLIPFMFVCWKYYSFEDFSAYLNYDCSFTEPMFVMIIMIIASSRPIFKLAEYVVNCGARLGKATPGAWWISVMCLAPLLGSLITEPAAMTIGALILSKKFYDLKPKKTLMYATLGLLFVNISIGGTLTHFAAPPVVMVAEKWDWGLAHMIQHFGWKAVSAIVISNLAYFFLFRREFARLASQQREFDEFDDAVPQSWEDRNDKIPLWVTLAHVCFLVWTVLFAHEPVMFIGSFLFFIGFTLATPQYQNQMSLRVPIMVGFFLAGLVILGGVQAWWLEPVLTRLGDYAMVGATLLTAFNDNAAVTFLASTVPNLPEAVKYSVVAGAVTGGGLTVIANAPNPAGQAILGKYFKGINPLWLFAWAAFPTAIVFIFFTCFGH
>NZ_LR699001.1|WP_022198766.1|979842_980448_+|riboflavin-synthase
MFTGLVETTGTVEGFTPINGGARLTLTIPFGRELSLGDSVAVNGCCLTVDALEGERISFDLLSQTLRVTSLGTLKPGMLVNLERAMSAMDRFGGHFVMGHVDHTGTIAALEPVGQDHRLEVRIPEELTRYCIDKGSITIDGISLTIANLSGSLLEFWITPHTFGRTNLQNAVPGQPVNLEVDMLAKYVERLFSAREQRAEG
>NZ_LR699001.1|WP_102733509.1|980639_981500_-|50S-ribosomal-protein-L11-methyltransferase
MTWSWNKLSAAKWEDAWSERIAGNPNAVITKIKGGKTVRITVYCDDEEDALALKKYFGGTVREIKTQDWVATQKREKRPPLKIRDALVITEQSSTENLAALRKQFPSRCILSVPAEMAFGTGDHATTSTCLRFICDAAKSRRKTSWSMTDIGCGTAVLAMAALKLGAEHATAFDFDPMAIEVARHNMVRNAVTAEQLDLFVEDVFEWKPSESQQGDLVVANLFSTILQKAFPQIIAAMKKDAALVISGILASQWEETKMAAERHGLFFERVVKRGKWITAKGGIAR
>NZ_LR699001.1|WP_102734535.1|981880_984484_+|autotransporter-domain-containing-protein
MKLFTLVMLSLVPSVTVCSVFSKEVDIYSGTYGNDDVEVFLPEEVTYHLTGGDGVFYEGAFTFDNYNPDKGGAGNRQGVFSGYSTHFSSTEGTSLGFHCTGLNPGKNSSASKSFIFVMGPWESGEEFVAPQVTFQDLGDLSFIADNMDMIGITDGATAGTGGGRYGKADFVSFNNVGNIEFRGLNHGGIGFSRLNSLAFTNTGDISFTDMKMGYSSHGGAIFINQGGDSSLYSKPGDGNISFDHTGNIIFRNLVKTSYYISSAGIFTNEGSISFNDTENILFENNTSTGGPAAIGIGSIFLPDNQPSLSFSNIRGDIIFRNNKASGGSMPGMAGAITIYGSFKLVQTGDVLFENNVTDKNTAGAIYCGNNERKRIGGQWLLSADGGNIVFRGNLVKGSSGVFARALGIFAYAPENDYTGMSQPNGNLTMDFRAQAGREIVFYDGIDIESITVAMPTLHINRIPSDWADYGGIPVEFGGTVRFSGALTESFLVRNDGESDGDYAERVEASRRVKLESNIIVEGGRLVLEYGMNLANESGEVWQGSSRVEQDKPVFNLAGGVLEITSGSSISAQQVTVSGHGSGAILRVGAAPIGSDSWEGKTYELPSLSAVTIDMSHGFDWDLMPFSERGDSGININASGEFLLGGTIGIADTLDDYASAAWGRDREFVIFNMDSSSKRPQGEMKGVISNTTQSSTVDSPYTYGGTWEYEWRDMDGDGEDDQLLAIWKHEAGCRPDQVRPEQAGELALNSLWSSASNAASLGNTALAQLTPVRLNQRYARNVWGMGLGDFARQRSRGGVDGYDYDGGGYSVGMDSDFGGKSGIWGIAFGQMHGFSKSRDFNGRITQDSLMGSIIGGGYSAPESVPCGR
>NZ_LR699001.1|WP_161994096.1|984504_985044_+|autotransporter-domain-containing-protein
MTDNCMESRFSNGMDAHGEWNNRTWLVQTEVSRSIQYAGGWTVSPFLRMEFTHGTEASFLEDGSYARKFEGAVLRRLSIPAGVSVERSGDWKGRPWTQVLRLSYVGDAIQDVPEASVYSIYSDIFWKARGVKPARHAVRVEYDAALQWNDRWTVYAGYGMEARGSSVYHRVNAGISRAF
>NZ_LR699001.1|WP_161994097.1|985136_986996_-|4-alpha-glucanotransferase
MDEKRLAGVVLPLFSLRRNNDHGIGDLTALRQWIDWAADAHVGFLQLLPVNALGRDECPSPYSAISSVALEPLYLSLEPWTIPGLEERVFNETGDTLPWEQPSGPDLVDYPKVRFWKMWILRGAWNNFKTKPEYECIMPKFREWVKEQGSWLEDFVCFQVLCDLFGTEIWWRWPEQDPARAKAIAADYEEEKDFARWLQWLCEKQWEFIRIYADERNVKLMGDIPIGVSLSSADVFFERHLFDTEWCGGAPAEGSYAEDPFTAKWGQNWGIPLYRWDVMAQDNFSWWRRRVKYCTKIFSMYRIDHILGFYRIYSFPWKPTENGVFLPLSPDQAAQRTGGRMPGFKPRGDDNAADRNMNLADGDLYLRLLLSAAPGVSVVGEDLGCVPDYVRPNMRQLDIPGFKIPHWEIKSDGTITSGKEYHECSFAAFGTHDFETIMQTWNDSYAKIERARKLGLWENGSPKTPSNPEQENIVRQAEDGARLLKWFADFSGMQPETCLSCWNQEIKTAMYNALFRSRSRYADILWPALFDINKRLNIPGTTGGTNWRERMPFKAVEACGMPQTAWLRTVIDESGRTPLQGEDAIRALKESSKRLFPKITVNNERFLKRMLTWPNGKTL
>NZ_LR699001.1|WP_022198775.1|987374_987986_+|hypothetical-protein
MKLLFLPSALLVLLASCGPNKHVNAWDRQSSALDPVGITSKKMAAKNKAEQAFYKPGEAVTFKKDRMMVFEQNPESNFSTSGTVRGGVKTGKVLVCGDLFAKVEFEDGSQGYVSLSEIVNPQEMMGFYPVSASDLIGPDGALLPLPSNMGAVSPEAAAASRELDISRMNTSLVPVPNSVSPSGAASQEAPPENVPLPESSVKQ
>NZ_LR699001.1|WP_022198776.1|988100_989459_-|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MPLTVGLISLGCPKNLVDSEIMIGHLQKAGMTMTPEPELADVMVVNTCAFIDQAKQEAIDAILDIVRARENGAYPENQKLIVAGCLSQRFRKELPALLPEVDAFIGPDQITKLPEIITQVMDRTIQNRNFIEGKCRYVPDWNTPRYRLTPPHTAYIKIAEGCNHGCAYCIIPMIRGRHRSRSQQDVVREAETLIRSGVKEICLIAQDITYYGMDKWTDARPNRRSAVDSSRGESLASLLRALNAIEGEFWIRLLYTHPAHWSDELTAAIAECPKVARYVDIPLQHISDNMLDAMQRVTDGDYIRTLLRNIRKAVPGIAIRTTFITGFPGETEDDHQELMEFIEEFRFERAGIFTFSREEGTKAYKMPNQVHHRTKARRYNEATLLLARLASETGQEQIGRQIRVLVDAPGVARTEWDAPDIDGTVSVPLTLPVGQFATVTVTDAVAYELTAE
>NZ_LR699001.1|WP_022198777.1|989485_990922_-|hypothetical-protein
MKRIHLLLLALLALFAGAPFRAAAEETFRDRVVVIPVGEDSLTSKQSFGFMNRILKRAQEEQARAVIFDLNTPGGLAWETSEMMMKSIQPLTIPTYAYVNPRAMSAGALISAACDKIYMAPVSSIGAAGIITSSGEEMDPVMRKKAESAFWAFTRSVVTEKGYRPEVVKAMMIPSDQEQQFGPVKLEKGALLTLTGKEAAARLEDGRPLLAQGTASSVTDLLAQEKVNAPVVTAEPTAFERIGLWIAWASPILILLGIGGIYMEFKTPGFGIGGIVAIAAFALFFFGNNIAGNLAGYETAALLVLGIVLLCVEFFVIPGTFIAAIAGGVCIFLALFGGMVSSWEWDHIIRDGQWDDVNTLAAVLGIPLLKLALGLTGGSLLIALLMKYLPDSILMRRVTNATVSGGSAGEAVNIARVQVGDRGNAVTELKPNGKAMIHGEICEVFSRQGILIKGTPVRVVDIRPFDLVVVKDDSPSGD
>NZ_LR699001.1|WP_162000104.1|991080_992901_+|DNA-primase
MIDWFRLMGRIDEDSIRRVLEATDIVDVVGAYLPLKRAGSRWKACCPFHNEKTPSFIVDQSRQNFKCFGCGEGGSAITFVMKMENLGFADTVRRLAEKAGISIVEEVYDAAEERRRKTRTALLVAHKKAAGFFHRLLLCSPKAAEARAYLNSRGYGADMAKRWQVGWAPDSSREFLAWARREGIPDQVLIDSGLANRGERGDLYARFRDRLMFPINNVYGECVAFSGRILRPQENVGKYVNSPETAIFKKGDVVFALDKARGPMGKSGKALLCEGQIDVIACHEAGISFAVAPLGTAFTPEHARILSRYASRIVLCFDADKAGMVAADRAFRELAPFGKDIYLVNLPAGDDPDSFMKREGKEAFSGMVERARSFFEVRIERARESGLLDDAASSAAFAREMTALLACMSDPVARDLATADVATRMRMAADNLRGAVRMAGRRKGQEQAQSAERKTAEEVPQHPPVKMDRAVAVLCELALQNSRAQGLIVDRIEELLEPMRLLQGGGILKKILARLPSPDSPAAVQAFLASLPQPERDALGMLNLEPIPIPDVDRSVQEACSGIAKAALERHIASLMAELADPSTDAARRLELSKLSVDLKRLLGTM

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Crispr_ID: NZ_LR699001_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699001_2

1027951-1029346

Orphan

Consensus_repeat	Method
GTCGCACCCACACGGGTGCGTGAATTGAAAC	PILER-CR
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CRISPRCasFinder
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CRT

21 spacers

The CRISPR arrays of NZ_LR699001_2

>merge|NZ_LR699001|2|1027951-1029346|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCCACACGGGTGCGTGAATTGAAACTTCAACATCAGGGACATTGAAGGCCTTGCGGGCGGTCGCACCCACACGGGTGCGTGAATTGAAACGCACCGGAATCGGTATATTTCGGACGGCCTGACCGTCGCACCCACACGGGTGCGTGAATTGAAACCCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAGGTCGCACCCACACGGGTGCGTGAATTGAAACAAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAGGTCGCACCCACACGGGTGCGTGAATTGAAACTCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTAGTCGCACCCACACGGGTGCGTGAATTGAAACCTACTAAACCTATCGGAATTGTGATTGAAGGCATGTCGCACCCACACGGGTGCGTGAATTGAAACCGTTTCCCTGGTGGGGTAGATAACGGTGGAATATGTCGCACCCACACGGGTGCGTGAATTGAAACCGCTCACTTGTATCTAAAAGGGTACAGTATAGCAGTCGCACCCACACGGGTGCGTGAATTGAAACAATTTGTATGACACAATCGTAAGTTATTCAGCATGTCGCACCCACACGGGTGCGTGAATTGAAACTGTTTCCCCGGTGGGGTAAATAACGGAGGCATATGTCGCACCCACACGGGTGCGTGAATTGAAACCCGCCGTAGGACAATCTCCCATGTGCTATGCGCCGTCGCACCCACACGGGTGCGTGAATTGAAACTATAGCCAATTGTGAGAGTTTCCGGTTTGTAACAGTCGCACCCACACGGGTGCGTGAATTGAAACTGCAGCCAGGACTAGGGATAAGATTCCCGCGCCGGTCGCACCCACACGGGTGCGTGAATTGAAACAGCATCTAAAATATGTGCGTAAGCTTCGACACGGGTCGCACCCACACGGGTGCGTGAATTGAAACACATTATATCATAAAAATAAGAGAGTTATGAACAGTCGCACCCACACGGGTGCGTGAATTGAAACGGTCCCTACAAATTACCAAGTCCCCCTTCTTAAAGTCGCACCCACACGGGTGCGTGAATTGAAACTTATCGTCCAACGAAATAATGACGTCCTTCCACGGTCGCACCCACACGGGTGCGTGAATTGAAACTACTTGGAGCGGAAACTTTCTACGGCATGGTCGAGTCGCACCCACACGGGTGCGTGAATTGAAACCGGAATGCTCGACGGCAATCTTCAACGCGTTATTGTCGCACCCACACGGGTGCGTGAATTGAAACTATTTGTTTGGTTTGTGATTGTGCGGGGGAACAAGTCGCACCCACACGGGTGCGTGAATTGAAACCAACAAACCGATACGTCCCCCAAGTTGTTTCTTAGTCGCACCCTCACGGGTGCGTGAATTGAAGT

>NZ_LR699001|2|1|1027951-1029346|PILER-CR
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TTCAACATCAGGGACATTGAAGGCCTTGCGGGCG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	GCACCGGAATCGGTATATTTCGGACGGCCTGACC
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CTACTAAACCTATCGGAATTGTGATTGAAGGCAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGCTCACTTGTATCTAAAAGGGTACAGTATAGCA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AATTTGTATGACACAATCGTAAGTTATTCAGCAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AGCATCTAAAATATGTGCGTAAGCTTCGACACGG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	ACATTATATCATAAAAATAAGAGAGTTATGAACA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TTATCGTCCAACGAAATAATGACGTCCTTCCACG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGGAATGCTCGACGGCAATCTTCAACGCGTTATT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA
GTCGCACCCTCACGGGTGCGTGAATTGAAGT

>NZ_LR699001|2|2|1027951-1029346|CRISPRCasFinder
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TTCAACATCAGGGACATTGAAGGCCTTGCGGGCG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	GCACCGGAATCGGTATATTTCGGACGGCCTGACC
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CTACTAAACCTATCGGAATTGTGATTGAAGGCAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGCTCACTTGTATCTAAAAGGGTACAGTATAGCA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AATTTGTATGACACAATCGTAAGTTATTCAGCAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AGCATCTAAAATATGTGCGTAAGCTTCGACACGG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	ACATTATATCATAAAAATAAGAGAGTTATGAACA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TTATCGTCCAACGAAATAATGACGTCCTTCCACG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGGAATGCTCGACGGCAATCTTCAACGCGTTATT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA
GTCGCACCCTCACGGGTGCGTGAATTGAAGT

>NZ_LR699001|2|1|1027951-1029346|CRT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TTCAACATCAGGGACATTGAAGGCCTTGCGGGCG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	GCACCGGAATCGGTATATTTCGGACGGCCTGACC
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CTACTAAACCTATCGGAATTGTGATTGAAGGCAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGCTCACTTGTATCTAAAAGGGTACAGTATAGCA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AATTTGTATGACACAATCGTAAGTTATTCAGCAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	AGCATCTAAAATATGTGCGTAAGCTTCGACACGG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	ACATTATATCATAAAAATAAGAGAGTTATGAACA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TTATCGTCCAACGAAATAATGACGTCCTTCCACG
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CGGAATGCTCGACGGCAATCTTCAACGCGTTATT
GTCGCACCCACACGGGTGCGTGAATTGAAAC	TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA
GTCGCACCCACACGGGTGCGTGAATTGAAAC	CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA
GTCGCACCCTCACGGGTGCGTGAATTGAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699001.1\|WP_164907728.1\|1041343_1042438_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271175
NZ_LR699001.1\|WP_161994099.1\|1021658_1022717_-\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|239200
NZ_LR699001.1\|WP_046435858.1\|1035161_1036826_+\|sulfatase	unknown	unknown	gnl\|CDD\|293763
NZ_LR699001.1\|WP_102735005.1\|1032397_1034971_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_LR699001.1\|WP_102734549.1\|1042763_1044902_+\|DUF4982-domain-containing-protein	unknown	unknown	gnl\|CDD\|236657
NZ_LR699001.1\|WP_094140204.1\|1025608_1027462_+\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|215261
NZ_LR699001.1\|WP_102735006.1\|1039335_1041273_+\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NZ_LR699001.1\|WP_022198810.1\|1038109_1039312_+\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|143502
NZ_LR699001.1\|WP_128153903.1\|1037141_1037888_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_LR699001.1\|WP_102734547.1\|1022787_1023987_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|237367
NZ_LR699001.1\|WP_012420683.1\|1024850_1025459_+\|beta-phosphoglucomutase-family-hydrolase	unknown	unknown	gnl\|CDD\|213673
NZ_LR699001.1\|WP_022198797.1\|1017782_1018658_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|223268
NZ_LR699001.1\|WP_102734544.1\|1019652_1020510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224513
NZ_LR699001.1\|WP_102734548.1\|1031719_1032373_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_LR699001.1\|WP_022198805.1\|1030694_1031591_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|179097
NZ_LR699001.1\|WP_102733500.1\|1029540_1030374_+\|secretion-protein	unknown	unknown	gnl\|CDD\|367948
NZ_LR699001.1\|WP_022198802.1\|1024124_1024346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_012420677.1\|1018725_1019508_+\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|223696
NZ_LR699001.1\|WP_102734545.1\|1020506_1021646_-\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_LR699001.1\|WP_094140175.1\|1024426_1024690_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|376586

Protein	Function_ID	Function_description	E-value
NZ_LR699001.1\|WP_164907728.1\|1041343_1042438_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.0306e-12
NZ_LR699001.1\|WP_161994099.1\|1021658_1022717_-\|tRNA-dihydrouridine-synthase	gnl\|CDD\|239200	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.	1.80845e-54
NZ_LR699001.1\|WP_046435858.1\|1035161_1036826_+\|sulfatase	gnl\|CDD\|293763	cd16144, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	1.78935e-173
NZ_LR699001.1\|WP_102735005.1\|1032397_1034971_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_LR699001.1\|WP_102734549.1\|1042763_1044902_+\|DUF4982-domain-containing-protein	gnl\|CDD\|236657	PRK10150, PRK10150, beta-D-glucuronidase; Provisional.	6.49354e-54
NZ_LR699001.1\|WP_094140204.1\|1025608_1027462_+\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|215261	PLN02470, PLN02470, acetolactate synthase.	0
NZ_LR699001.1\|WP_102735006.1\|1039335_1041273_+\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NZ_LR699001.1\|WP_022198810.1\|1038109_1039312_+\|carboxynorspermidine-decarboxylase	gnl\|CDD\|143502	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.	0
NZ_LR699001.1\|WP_128153903.1\|1037141_1037888_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00459823
NZ_LR699001.1\|WP_022198805.1\|1030694_1031591_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|179097	PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional.	2.32887e-125
NZ_LR699001.1\|WP_012420683.1\|1024850_1025459_+\|beta-phosphoglucomutase-family-hydrolase	gnl\|CDD\|213673	TIGR02009, Hypothetical_protein_Rv3400/MT3508/Mb3433., beta-phosphoglucomutase family hydrolase. This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).	3.64041e-52
NZ_LR699001.1\|WP_022198797.1\|1017782_1018658_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|223268	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism].	2.62007e-142
NZ_LR699001.1\|WP_102734544.1\|1019652_1020510_-\|hypothetical-protein	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	5.55155e-43
NZ_LR699001.1\|WP_102734548.1\|1031719_1032373_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	6.89215e-106
NZ_LR699001.1\|WP_102734547.1\|1022787_1023987_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|237367	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional.	0
NZ_LR699001.1\|WP_102733500.1\|1029540_1030374_+\|secretion-protein	gnl\|CDD\|367948	pfam04450, BSP, Peptidase of plants and bacteria. These basic secretory proteins (BSPs) are believed to be part of the plants defense mechanism against pathogens.	1.11966e-62
NZ_LR699001.1\|WP_012420677.1\|1018725_1019508_+\|enoyl-ACP-reductase	gnl\|CDD\|223696	COG0623, FabI, Enoyl-[acyl-carrier-protein].	2.77822e-127
NZ_LR699001.1\|WP_102734545.1\|1020506_1021646_-\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	3.70369e-12
NZ_LR699001.1\|WP_094140175.1\|1024426_1024690_-\|30S-ribosomal-protein-S20	gnl\|CDD\|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	4.45764e-17

>NZ_LR699001.1|WP_094140204.1|1025608_1027462_+|biosynthetic-type-acetolactate-synthase-large-subunit
MSTNDKTSSAPTKTRMTGAEVLVECLVREGVDVVFAYPGGASMPIHQALSHQPKIRTILPRHEQGGAFGAEGYGRVTGKVGVCISTSGPGATNMITSIADAYLDSTPLVAITAQVMRSLIGRGAFQETDVFGMTAPIVKHSYLVTEPEELPRIIKEAFYIASTGRPGPVLIDMPKDVQEAVFTPDFDMEMDIPGYNPVLPVPADKLEELIPLIENARRPVIYAGGGIISAEASGDLLEFAERSQIPVATTLMGIGAMPETHPLSLRWLGMHGAVFANNAVNEADLVIALGARFDDRVTGAVNMFCPESTIVHIDIDASEINKNKKVAYPIRANVKDALRVLNSALAAKGWERKSSVYTRTPEWFGVIDGWKKQYPFSYEDRKGYIAPQAVIEELYRQTADKDPIICTGVGQHQMFAAQFFKFDKPRRLATSGGLGTMGYGLPASMGACLAYPDRLVVNIDGDGSMLMNIQELATIHVERLPVKCIILNNQHLGMVVQWEDLKYDSNRAQTFLADPHDNYDPTHKTEDVIYPNYPLICAGFGVKCERVLRIEELPAAITRMIESPEAYVLDVMVPHDVHVLPMILGGMSYKDVILERIAGDGSAKKASELGKEIPTAL
>NZ_LR699001.1|WP_012420683.1|1024850_1025459_+|beta-phosphoglucomutase-family-hydrolase
MKKRVDLPEKKYEGYIFDLDGTLVDSMPLHYRAWREALARAGAPDHVFRADEFYSCGGKSANDVVRFLNERYGMHMDAASTAADKRRIYLEMLEKEGMQPIREVVEFVHSLGDAPKAIATGSAMPGASRTLAAAGLSGLFDVILTPDEVEHGKPAPDMFLKAAELLGASPDRCVVFEDAEPGMKAAAAAGMDCVQVRRPSLS
>NZ_LR699001.1|WP_094140175.1|1024426_1024690_-|30S-ribosomal-protein-S20
MANTKSALKRIRQTATRTARNRAVTSKLKTLRKKVAAAVETSDKEAAAAAYNTFSSAVDKAAKVGIIPANRAANYKSKAAKAIAKIA
>NZ_LR699001.1|WP_022198802.1|1024124_1024346_-|hypothetical-protein
MQQSRLDKAKLIIDRPGDFKVCEACGSIVSLTTAVCPNCNAYRFDSNTEYVVEQAVLLASREQRSVTPEDLEI
>NZ_LR699001.1|WP_102734547.1|1022787_1023987_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MNQDSTRKARVNVRRAEVMEQVEKEIQQHYQSELISHIRSAGNVYNLGHTEFFLAREFGFCNGVRRAIDIAYAARRVFPDRRIFLIGDIIHNPEVNRQLEEMGIRKLPWKQLDSSYDRIAPDDVVIIPAFGVPTPFMDALEEKGVQIVDTTCGDVMKVWKRVKNYAAMGITSIIHGKATHEETSATASRALGERGRGKYLVVYDLEDARILCDYIMGRGDREAFLKRFEGCCSPGFDPDRDLEEVGIANQTTMLKTETQTLQKMVKDAIVQRDGDDDNFYVFDTICGATQDRQDALYELLKNPLDVMFVVGGYNSSNTTHLVDIAREHVPTYFIESAECIKSIQYVDAFDTKTREVRRMTTEPVVQNLGKSLKVGITAGASCPANLIEATILRIADLRK
>NZ_LR699001.1|WP_161994099.1|1021658_1022717_-|tRNA-dihydrouridine-synthase
MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARDAQVLMKHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHSPDRVCIHARTVREGYRSPVHPEWVKWAARMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQGHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAPFAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV
>NZ_LR699001.1|WP_102734545.1|1020506_1021646_-|transglutaminase-domain-containing-protein
MNLLPFALLPGLTAAICAAHDTIQDGVEFLRAHMPAQDRGTVTQERLVREVRLALAARSQFPWAAQVPWELYENNVLPYAVVNEPRDEWREQFHHLFSPLVSPCKTGREAALTIASHIQKTLNVRYSTERRVPHQGVKESLQSGKVSCTGQSILLICALRSVGIPARMAGVLTWNHVRGNHNWVEAWCDGEWKMLEYNEKDFNTPWVMSAISMLDPRKPENAIYATSWKKEPSGAFFPMIWEARYDEKRHALAFPPESRTVPAVNITDRYMKLANKWVAAQPEYVPGSRLMLDIREERKNGARRLPLHVVLKSEEGKVLAEGITPGPSDDMRKFLEVLLPDNISRGMLEFKLPDGTVRHEPVAHTEAPVQILNFFVSAP
>NZ_LR699001.1|WP_102734544.1|1019652_1020510_-|hypothetical-protein
MKIPLFFNNTARSARAGRFRRWLDRHRDFFDVIEPESREDMLNHLVSQANSGAPAVAVAGGDGTLGIAARALCNTETVLAPFPAGTMNVFSREIGIRPDFDHALHILNTGRSKNVDLFAFNGQVFLQMAGIGADARAVELTTWEMKKKWKALAYVIAGARVCTEKQPHLTLTTDEGRILEGRSIIFGNGRKYGGPLNFFAEADNSDGLLDAVVFRHSITSIIGEFLMAAVQGGFHSRRSGSFEYIRMTGGTVTSAGQAACELDGDYAGNAPVRITRPGSLKVFVP
>NZ_LR699001.1|WP_012420677.1|1018725_1019508_+|enoyl-ACP-reductase
MSSKLLEGKVGVVVGVANKRSIAFAIAKAWHEAGAKLIFNYQGERLKDGVLKLIHENFGEDVPVYDLDVSSDESVNAFFERVRQHTDKVDCLLHSVAFAPKEALGGSFLETGREAFKISLDISAYSLVALSRAVEPMMSDNGSILAMSYLGSEKVVPNYNLMGVSKAALEACTRYLAYDLGRSRGIRVNCISAGPMQTLAARGVSGFNTMFKVYEEHAPLGRSCTGEELGATGVFLASDGAAAITGQVIYVDGGYQIMGM
>NZ_LR699001.1|WP_022198797.1|1017782_1018658_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MQIIDGKQVASQVLEEVERDIARLREQGITPGLAVVLVGEDPASQVYVNSKVKKCAELGMNSRKIVLPSDASQEELLRIVRELNVDPAVHGILVQSPPPPHIDEAAVVLEIDPAKDVDGFHPENVAKLVLEDETGFVPCTPLGCMRLLKAAGIETAGANAVVIGRSMIVGKPMAHLLMSKQANATVTVAHSRTKNLPELCRSADIIVAAIGRPAFVTADFVKDGAVVVDVGINRVEDASAKRGYRIVGDVAYDEVAPKCRAITPVPGGVGPMTIAMLMANTVKACRQQTGA
>NZ_LR699001.1|WP_102733500.1|1029540_1030374_+|secretion-protein
MKRYCLVSGLCLCLFMGIFSCIPEAPEHKTEKDASAIVLDEDSDIIWRNFSLGRVSFDDKAPHSKGSRIFHRLIPDTEVYIRQLSRIVLHTLYESPEECIVPVHHLRFMLEDTDGVACKWGGNGEVAISCSTRHIEGLFKDDDDAAKVYFEIRGVLLHELTHVYQQEPQGIGSYGTNREFRAFIEGIADAVRIANGGFHRGAYRPTGGSYMDGYLHAGYFFVWLRDYKDPEFLRKLNRSALEVVPWSFDGAVKYALGSEYHIDELWREYQRVMEEEK
>NZ_LR699001.1|WP_022198805.1|1030694_1031591_+|phosphatidylserine-decarboxylase
MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLKGVGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLSRLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVPGVFSARGAEKGYFAFGGSTVMCFFEPGRVSLASDLLEKTEEGLELFARQGDMMGTAAT
>NZ_LR699001.1|WP_102734548.1|1031719_1032373_-|ribulose-phosphate-3-epimerase
MTIISPSLLAADFSRIGEEARRAFDSGADWLHLDIMDGHFVDNISFGPEICAAVRKAVGPNRFLDAHLMIERPDHYFDRFVRAGVNLICFHVELGDSYYIRNTLGRIREAGVKNGLALNPATSFEAVEPYLAEIDLLLVMSVVPGFGGQSFMPSVLDKVEKAAEWRTENRASFLIQMDGGIGQNNAAQCALAGADVLVAGSSTFKAPDMARAIAEMK
>NZ_LR699001.1|WP_102735005.1|1032397_1034971_-|leucine--tRNA-ligase
MSERKKPYPFDVFEPKWQQIWDERKTFKVNNPGEEGFDASKPKYYVLDMFPYPSGAGLHVGHPEGYTATDIVARFKRMNGFNVLHPMGWDSFGLPAEQYAIKTGQHPSVTTFRNIDNFRRQLKMLGFSYDWDREIATTDHEYVRWTQWIFLQLYNSYYNKELKKARPVSELEEQGLSREEIDQRRLAYVAEAAVNWSPDLGTVLANEEVEEWKSKGHRVERRPLRQWMLRITDYAERLIDELEPLDWPESIKLLQRNWIGKSEGAEVDFTLDGETITVYTTRPDTLFGATYMVLSPEHPLVDTVTTPEQKHAVEQYRAQCASKSDLERTDLSKEKTGVFTGAYAVNPVNGKQIPVWIADYVLMGYGTGAIMAVPAHDERDFAFAQVFGLPILQVVQPPSEDMDWRGFCGYEGSSVNSGFLTGLPTPEAKEKMILWLEENGKGRRKVNYKLRDWLFSRQRYWGEPFPIVWENGHHRALPESELPVLQPDLDDFAPTGDPRGPLVKAAEWIAYTPTAHRETNTMPQWAGSCWYYLRYLDPANTERFVSREAEQYWMGSAGSPGGVDLYVGGTEHAVLHLLYARFWHKVLFDLGYLSTNEPFQKLVNQGLILGEDGQKMSKSRGNVVNPDDIVREYGADSLRLYEMFMGPLKDVKPWATKGVEGISRFLARVWRVAFRENQEGEWEINSKLVENAPEAGVLAVRKELHKTIKKVTEDINGMSFNTAIAKMMECTNAMTSADVVDVQDYDAFLTLLNPFAPHLTEEIHSRLQTAFPALAQTQLCQKSWPEWEEALLEENTVPMVIQMNGKLRDKLEVPKDISREELEKQALASAKVKTFLDGVTVRKVIVVPGRLVNIVAN
>NZ_LR699001.1|WP_046435858.1|1035161_1036826_+|sulfatase
MSAVCGALFLFAGASALGNGSNPVSGKKPNIIVFLVDDMGWQDTSHPFWSDSQGNPKKTFLNRRYRTPNMEKLASQGMTFTDAYAHPLCTPSRVSLMSGMNPARHRVTCWVREQNGTTDANSRSLLPPDWALNGLQPIGTPARGTTKRPISGEDMRYHMTRPFATAATLPEMLKKCGYVTVHCGKAHFGTQGTPGSNPLNMGFDYNIAGTEIGHPADYRGSRHYGKGFNHVRGLDENNYYQDDVFLTEALTREAIKRLEAIRTNPREAGKPFYLYMAHYALHSPLDERAYDKRFADAYKNPEDGHKWSRTEKHYSGLIEGMDKSLGDIMKYLREHHLEKNTVLVFMSDNGGLAISGRLGNEEANYPLSFGKGSCMEGGIREPMIVSWPGVTKGGSRCAVPVVIDDFFPTLLDIAGCRNVEVPQKLDGLSLVPLLKGGRFPEDRPLLFHQPNNWGEGSRQAPQYTSSTALRQGDWKLIYRHLTQSFELYHLRKDIGEKENLASREPRKTREMAVVMGRLLRERKAQMPTYKKDNELGAPAGSSVPWPDQVKGNGF
>NZ_LR699001.1|WP_128153903.1|1037141_1037888_-|hypothetical-protein
MTNIHPFTTAAACILTAGAALFTSSCQPASPESYARQFATAQHVSVHGYNGRETLTSRVYADWGSMPANARRAMEEYIKGAEWKTMDYIRPQYFIQVDRSFWAICIDNDGNMTGIIPFRNGKDARKMSVNNHFKMLVNTTDRAPALGYAILKNLAYADGLRVSTRKADGLETPVPAPPAMKVVVPPKGAAPSAAPAAKSAATSVSEPGATEETPADDTAGTEEEPSADSAAESEDTTTTDDAAVTDDF
>NZ_LR699001.1|WP_022198810.1|1038109_1039312_+|carboxynorspermidine-decarboxylase
MSAFIISLPALERNALILRDVADAAGCRIALALKGFSCWPCFEALSPWLDGCCASGLWEARLARRRFGKHVLTYSPGHAPEEIAELAEISSHLDFNSLTQWSRFREEVMRHPRFVSGELKCGLRVNPQCSTGHTPIYDPCAPGSRLGVTPDMMQGADLSGISGLHFHTLCEQGADDLAVTMDAVERHFGHLLSRPEISWLNMGGGHWITKPDYDRKLLAALIRRIRERYGVEVWLEPGEAAAIHTGVLRCRVLDLFSAEGVNHAILDVSASAHMPDTLEMPYRPDVFQIAGDASLRSAQQPAVRLEGESYALAGKAGEKAYTYRLGAPTCLAGDRLGDYSFAEPLAVGDELVFDDMAHYTMVKTTFFNGVRHPDIAVQRKDGSVETVRRFSYEDFEARLG
>NZ_LR699001.1|WP_102735006.1|1039335_1041273_+|biosynthetic-arginine-decarboxylase
MATAKEGIKQKVRGWSHHDSADLYGIDDWGNGYFRISKKGEVTVRLNDEDGGKKDVSLCDLLEGLKERGTTVPVLFRFRDLLRSRIAELNDSFRKAIKEAGYQGKYQGVYPIKVNQQRQVVEEIAEFGTKYDYGLEAGSKPELIAAMAHMHNPNAYLICNGYKDDEFIDLALTAQKMGLNIFIVLEMPSELDVIMERARRMDIRPNLGVRVKLAAKGSGLWQESAGDKSVFGLNAAQVVDVVDKLKQVDALDCLKLLHYHQGSQIPNISVVREGLTEAVRIYVDLVKEGAPLGTLDMGGGLAVDYDGSKTNFHSSCNYSIAEFARDVVEVVGDMCSKYGVPHPTLVTESGRAVVAYYSVLVFNVLDVTSAPGEEPPPELPDDAPELLKAFADTDRTLARKNMQECYNDACYYRDQLRAQFFYGNATLRQRGLGEAYYWHILSRISRMLAEMETIPEDLRELSCSMVDFYYGNFSLFQSLPDSWAIRQLFPVMPLHRLNERPTNKAVLADITCDCDGKIDQFIDREDVATALPLHAIKPGEDDYYIGVFLVGAYQETLGDLHNLLGDTNVVGVHLEGGRPVYTHEVEGDTVSDVLSYVEYDPKELINKFRTFAEQAVAEGKISPSERRRALEVFRSGLNGYTYYEL
>NZ_LR699001.1|WP_164907728.1|1041343_1042438_-|tyrosine-type-recombinase/integrase
MKKAPNTNKLKYVGAALLEGESVTLIQAARLVLEIKEALGDEICTITRCREVVSLGLNAIKNKHQTVSFGTAAVECLRSKSHRRPRTLTDIRSIIHKLKKSNPELEHTSLRNLSVEECQNILMNTFTTSRQRHKARLILSGIFSFSVKRGWCDENPILRVDTPFLQEQEIPALTLKEITQLLKAAMEEFDGSCAAGAALMIFAGIRPQEVERLLWENIALRDGCIILNSKHTKTGGARHVTILPVLAKWLKFCRDRTKPGPGTPICPKGWTIKWRKIRKKAGWGGRKKSWVPDCLRHTYASYHAKHFKDYNLLQMEMGHRSSSLLRTRYLNMKGISPQTATRFWALTPAKVIEETKPPEEPLVS
>NZ_LR699001.1|WP_102734549.1|1042763_1044902_+|DUF4982-domain-containing-protein
MNIRIHSFNVSCVGLCCVLGSFFAADAREVYPLNGSWDFSFNGKPAEKVTVPHTWNAEDAANGAQGKREDAKSVNSDAYRRGPAVYSRTLPVEPRPGKRYFIRGGGASIVSEVSVNGKPAGSHEGAFTAFCYEITPLLKKGSNTISVLVDNTQRNHIAPQRGDFSMFGGLYRPIELIETDGVCIDPLFYASPGVFITTKSLSKSKAEVEVKTLLNSDGKAGDVDVAVEILDMKGRKVAGKTVKAAAGEKNRLEVPVTLAIANPILWNGVKNPYLYQVKTSIRTADGQTDELVQPLGLRTVSVNPKEGFVLNGKTMQIKGVSRHQDMKGKGWALSPEDEARDIRLIADMGADGVRTGHYPASANIYDLCDKAGLIVWSEVPNVNLVWDTPEFRENNRLQAREMIFQHWNHPSICMWGIFNEIGHQPEAATRGVDMEAELTELNKFVKETDPSRMTVGASNQAGRRKLNNIPDHIAFNTYPGWYGGGPETMKGNLNGYIRDYGGKMGIAVSEYGHGASVDMHENPAQRPSPTGFWHPEEWQSHAHEVNYRCIRERPEVWGAFVWNMFDFGSSSRFEGESPGINDKGLVTYDRKTPKDAYFFYRANWSPRPTVYITSRRFAERTEKTVPVKVYSNGSVVKLSVNGKPVGSVKPDDLKRAVWPEVTLKPGVNTITATASIGGKTYTDSCKWTLNPAGGDGKKDSERYQDPSLKKYK

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Crispr_ID: NZ_LR699001_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699001_3

1553383-1554619

TypeI

Consensus_repeat	Method
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CRT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	PILER-CR
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CRISPRCasFinder
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	PILER-CR

18 spacers

cas2,cas1,cas4,cas3,cas5,cas8c,cas7

The CRISPR arrays of NZ_LR699001_3

>merge|NZ_LR699001|3|1553383-1554619|CRT,PILER-CR,CRISPRCasFinder,PILER-CR
CGTCCTCTTCATGCACTCTGCAAGGAGTGCGACGGGCGGAAACCCGCAAATAACAATCACCATTCAGGTTTCAATCCACGCACTCCTTGCAGAGTGCGACTACAGGCGGCGATGTGTGATGTGCTGAGGCTTCCGTTTCAATCCACGCGCACTCCTTGCGGAGTGCGACGCCGCATAGCACATGGGAGATTGTCCTACGCCGGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACAATAGGCAACCGGGCGGCCTGCCTCGCTCTCTAGTTTCAATCCACGCACTCCTTGCGGAGTGCGACTGTCACAGCGGTATGGTCCATATTACCCACCGGGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACGATTAGACGGAAGGTACGTGCGTTCTATGTCATGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACCCCCGTCCCCGTGATATCATTAACTTCTGGATTAGTTTCAATCCACGCACTCCTTGCGGAGTGCGACAAGAAATAAAACAATGAATAATCAAATCAAATTGTTTCAATCCACGCACTCCTTGCGGAGTGCGACAAGGCATAACGGCTTTCATGTTGTGACTACCAAGTTTCAATCCACGCACTCCTTGCGGAGTGCGACATGACCTGGAAAGGAATCCGGCTTTTCGCTAAGAGTTTCAATCCACGCACTCCTTGCGGAGTGCGACGATTCCGTTGCTGGTGGAGGGGTCAGGCCGTCCGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACTAAACTAAAACCACTAAAGAAAGGAAACAATTATGTTTCAATCCACGCACTCCTTGCGGAGTGCGACTTTAGTGGTTTTGTTATTCAGCATCAGGGATATTGTTTCAATCCACGCACTCCTTGCGGAGTGCGACCTTAACCCCGGCGGAATGCGAGACCTACGAGGCGGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACGGTCAGGCCGTCCGAAATATACCGATTCCGGTGCGTTTCAATCCACGCACTCCTTGCGGAGTGCGACAAGAAACGGCCCTTACACTTGCTATTACTGGCAGTTTCAATCCACGCACTCCTTGCGGAGTGCGACGCGAAAAGCCACTTACCCCCGTTGCCATGAATCGTTTCAATCCACGCACTCCTTGCGGAGTGCGACACACAATCGTAAGTTATTCAGCATCAGGGACATTGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC

>NZ_LR699001|3|2|1553383-1554619|CRT
CGTCCTCTTCATGCACTCTGCAAGGAGTGCGAC	GGGCGGAAACCCGCAAATAACAATCACCATTCAG
GTTTCAATCCACGCACTCCTTGCAGAGTGCGAC	TACAGGCGGCGATGTGTGATGTGCTGAGGCTTCCGT
TTCAATCCACGCGCACTCCTTGCGGAGTGCGAC	GCCGCATAGCACATGGGAGATTGTCCTACGCCGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AATAGGCAACCGGGCGGCCTGCCTCGCTCTCTA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TGTCACAGCGGTATGGTCCATATTACCCACCGGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GATTAGACGGAAGGTACGTGCGTTCTATGTCATG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CCCCGTCCCCGTGATATCATTAACTTCTGGATTA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGAAATAAAACAATGAATAATCAAATCAAATT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGGCATAACGGCTTTCATGTTGTGACTACCAA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	ATGACCTGGAAAGGAATCCGGCTTTTCGCTAAGA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GATTCCGTTGCTGGTGGAGGGGTCAGGCCGTCCG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TAAACTAAAACCACTAAAGAAAGGAAACAATTAT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TTTAGTGGTTTTGTTATTCAGCATCAGGGATATT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CTTAACCCCGGCGGAATGCGAGACCTACGAGGCGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCAGGCCGTCCGAAATATACCGATTCCGGTGC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGAAACGGCCCTTACACTTGCTATTACTGGCA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GCGAAAAGCCACTTACCCCCGTTGCCATGAATC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	ACACAATCGTAAGTTATTCAGCATCAGGGACATT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC

>NZ_LR699001|3|2|1553450-1554151|PILER-CR
GTTTCAATCCACGCACTCCTTGCAGAGTGCGACTA	CAGGCGGCGATGTGTGATGTGCTGAGGCTTCCGT
TTCAATCCACGCGCACTCCTTGCGGAGTGCGACGC	CGCATAGCACATGGGAGATTGTCCTACGCCGGGT
TTCAATCCACGCACTCCTTGCGGAGTGCGACAATA	GGCAACCGGGCGGCCTGCCTCGCTCTCTAGTTT
CAATCCACGCACTCCTTGCGGAGTGCGACTGTCAC	AGCGGTATGGTCCATATTACCCACCGGGGTTTCA
ATCCACGCACTCCTTGCGGAGTGCGACGATTAGAC	GGAAGGTACGTGCGTTCTATGTCATGGTTTCAAT
CCACGCACTCCTTGCGGAGTGCGACCCCCGTCCCC	GTGATATCATTAACTTCTGGATTAGTTTCAATCC
ACGCACTCCTTGCGGAGTGCGACAAGAAATAAAAC	AATGAATAATCAAATCAAATTGTTTCAATCCAC
GCACTCCTTGCGGAGTGCGACAAGGCATAACGGCT	TTCATGTTGTGACTACCAAGTTTCAATCCACGC
ACTCCTTGCGGAGTGCGACATGACCTGGAAAGGAA	TCCGGCTTTTCGCTAAGAGTTTCAATCCACGCAC
TCCTTGCGGAGTGCGACGATTCCGTTGCTGGTGGA	GGGGTCAGGCCGTCCGGTTTCAATCCACGCACTC
CTTGCGGAGTGCGACTAAACTAAAACCACTAAAGAAAGGAAACAATTATGTTTCAATCCACGCACTCCTTGCGGAGTGCGACTTTAGTGGTTTTGTTATTCAGCATCAGGGATATTGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CTTAACCCCGGCGGAATGCGAGACCTACGAGGCGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCAGGCCGTCCGAAATATACCGATTCCGGTGC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGAAACGGCCCTTACACTTGCTATTACTGGCA


>NZ_LR699001|3|3|1553450-1554619|CRISPRCasFinder
GTTTCAATCCACGCACTCCTTGCAGAGTGCGAC	TACAGGCGGCGATGTGTGATGTGCTGAGGCTTCCGT
TTCAATCCACGCGCACTCCTTGCGGAGTGCGAC	GCCGCATAGCACATGGGAGATTGTCCTACGCCGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AATAGGCAACCGGGCGGCCTGCCTCGCTCTCTA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TGTCACAGCGGTATGGTCCATATTACCCACCGGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GATTAGACGGAAGGTACGTGCGTTCTATGTCATG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CCCCGTCCCCGTGATATCATTAACTTCTGGATTA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGAAATAAAACAATGAATAATCAAATCAAATT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGGCATAACGGCTTTCATGTTGTGACTACCAA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	ATGACCTGGAAAGGAATCCGGCTTTTCGCTAAGA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GATTCCGTTGCTGGTGGAGGGGTCAGGCCGTCCG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TAAACTAAAACCACTAAAGAAAGGAAACAATTAT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TTTAGTGGTTTTGTTATTCAGCATCAGGGATATT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CTTAACCCCGGCGGAATGCGAGACCTACGAGGCGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCAGGCCGTCCGAAATATACCGATTCCGGTGC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGAAACGGCCCTTACACTTGCTATTACTGGCA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GCGAAAAGCCACTTACCCCCGTTGCCATGAATC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	ACACAATCGTAAGTTATTCAGCATCAGGGACATT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC

>NZ_LR699001|3|3|1554253-1554486|PILER-CR
	CAGGCGGCGATGTGTGATGTGCTGAGGCTTCCGT
TTCAATCCACGCGCACTCCTTGCGGAGTGCGACGC	CGCATAGCACATGGGAGATTGTCCTACGCCGGGT
TTCAATCCACGCACTCCTTGCGGAGTGCGACAATA	GGCAACCGGGCGGCCTGCCTCGCTCTCTAGTTT
CAATCCACGCACTCCTTGCGGAGTGCGACTGTCAC	AGCGGTATGGTCCATATTACCCACCGGGGTTTCA
ATCCACGCACTCCTTGCGGAGTGCGACGATTAGAC	GGAAGGTACGTGCGTTCTATGTCATGGTTTCAAT
CCACGCACTCCTTGCGGAGTGCGACCCCCGTCCCC	GTGATATCATTAACTTCTGGATTAGTTTCAATCC
ACGCACTCCTTGCGGAGTGCGACAAGAAATAAAAC	AATGAATAATCAAATCAAATTGTTTCAATCCAC
GCACTCCTTGCGGAGTGCGACAAGGCATAACGGCT	TTCATGTTGTGACTACCAAGTTTCAATCCACGC
ACTCCTTGCGGAGTGCGACATGACCTGGAAAGGAA	TCCGGCTTTTCGCTAAGAGTTTCAATCCACGCAC
TCCTTGCGGAGTGCGACGATTCCGTTGCTGGTGGA	GGGGTCAGGCCGTCCGGTTTCAATCCACGCACTC
CTTGCGGAGTGCGACTAAACTAAAACCACTAAAGAAAGGAAACAATTATGTTTCAATCCACGCACTCCTTGCGGAGTGCGACTTTAGTGGTTTTGTTATTCAGCATCAGGGATATTGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CTTAACCCCGGCGGAATGCGAGACCTACGAGGCGG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCAGGCCGTCCGAAATATACCGATTCCGGTGC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAGAAACGGCCCTTACACTTGCTATTACTGGCA
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699001.1\|WP_102734690.1\|1547791_1548118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_046435229.1\|1546083_1546293_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_102734694.1\|1565195_1568777_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143443
NZ_LR699001.1\|WP_102734057.1\|1555124_1556144_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_LR699001.1\|WP_161994025.1\|1556932_1559317_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_LR699001.1\|WP_128153556.1\|1568935_1569913_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_162852053.1\|1556140_1556830_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_LR699001.1\|WP_128153555.1\|1551411_1551618_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_031931491.1\|1551942_1552563_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222807
NZ_LR699001.1\|WP_102734060.1\|1559319_1560033_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_LR699001.1\|WP_102734018.1\|1549768_1551403_-\|head-tail-connector-protein	unknown	unknown	gnl\|CDD\|378829
NZ_LR699001.1\|WP_102734689.1\|1546396_1547743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284995
NZ_LR699001.1\|WP_102732565.1\|1552903_1553167_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_022197359.1\|1552613_1552907_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_LR699001.1\|WP_102734017.1\|1548616_1549498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_172621306.1\|1561882_1562743_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_LR699001.1\|WP_012421083.1\|1549490_1549772_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699001.1\|WP_102734693.1\|1560034_1561855_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_LR699001.1\|WP_102734101.1\|1563577_1564732_-\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_LR699001.1\|WP_094136088.1\|1554819_1555110_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_LR699001.1\|WP_102734693.1\|1560034_1561855_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_LR699001.1\|WP_161994025.1\|1556932_1559317_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.06335e-50
NZ_LR699001.1\|WP_162852053.1\|1556140_1556830_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	9.69542e-41
NZ_LR699001.1\|WP_031931491.1\|1551942_1552563_+\|hypothetical-protein	gnl\|CDD\|222807	PHA00662, PHA00662, hypothetical protein.	9.5243e-22
NZ_LR699001.1\|WP_102734060.1\|1559319_1560033_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.91961e-89
NZ_LR699001.1\|WP_102734057.1\|1555124_1556144_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	4.07273e-173
NZ_LR699001.1\|WP_102734689.1\|1546396_1547743_-\|hypothetical-protein	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	6.35313e-30
NZ_LR699001.1\|WP_094136088.1\|1554819_1555110_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.01496e-32
NZ_LR699001.1\|WP_102734694.1\|1565195_1568777_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
NZ_LR699001.1\|WP_102734018.1\|1549768_1551403_-\|head-tail-connector-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	7.76038e-156
NZ_LR699001.1\|WP_172621306.1\|1561882_1562743_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.04723e-135
NZ_LR699001.1\|WP_102734101.1\|1563577_1564732_-\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	4.0966e-18
NZ_LR699001.1\|WP_022197359.1\|1552613_1552907_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.97883e-05

>NZ_LR699001.1|WP_102732565.1|1552903_1553167_+|hypothetical-protein
MNNPLLSTEEKRRWLARVFRDEDGEYSQADKFKALVEDTKLAALQQEEEEFKRQREIGAAPQDPILALLQAIPPAELNLHQHPLSEK
>NZ_LR699001.1|WP_022197359.1|1552613_1552907_+|BlaI/MecI/CopY-family-transcriptional-regulator
MKALDFIQIFASNVRRLDFRLSSAQVILAVIAGYRRHSTITEATRLHPNTVTNILQDLIAQGYVNRIGDSRPYVYRPTADGEQLAGNLLDKNTFPGT
>NZ_LR699001.1|WP_031931491.1|1551942_1552563_+|hypothetical-protein
MINESLLQPDTPSALDICNAALSKIGEAPLDALIANESTASRLCVLHYHPARRETLCMARWTFAATQTTLDSVSAQAPNSLTPYQFTLPADCLRVLDVECSEWKMQGRRIHASCAPLPLSYIADIENADQFDPLFMDALATRLAEKLAMPLTGNQSLRQNLNQEFHKIILPQAATVNAVQCFSNDSHPLLDLLRKIKSPSCPEECE
>NZ_LR699001.1|WP_128153555.1|1551411_1551618_-|hypothetical-protein
MKPSTPSASAPEQTIPVKAESVEQEVGEDYQARERQRQGMISTILARRHSSAGQGEVNPRTLLRKTLG
>NZ_LR699001.1|WP_102734018.1|1549768_1551403_-|head-tail-connector-protein
MEERTAELNSVYKSLAAQRAPWETWWDRLRDYVLPRRLNREGEVSLPNRDAMDRMTDTTAVEACQKLASGHMSYITPSHDVWFKWSAPDDRGGDEAEAWYNQCSEIALKELSVSNFYTEIHECFLDRVALGTGSLFTGTSSDGRLLFTNIPCGQFACAENAEGRVDTYVREFTYTAHQARSMFGVKALGPKAREVLERGGNPYATTLRFLHVVRPRTRRSRRREQASHMPFESVYLSLDDQVIVEEGGYMEFPYLVTRFLKWGSGPYGLAPGRLVFPAIQQVQFLNRILDTLGEVAAFPRILELANQIGEVDLRAGGRTVITPEAASLHLPREWATQGRYDVGMDRLAQKQDAIRRAYYLPMLELWSGHRGNMTATEVMARENERVLMFSPSFTLFVSDLYSTMTRIFSLLFRMGKFPRPPRAVLRVGRDGSVAVGEPRVVYQSKIALVLRRLQSEGMDRSLQRLNMMMQAAPDLADHVDWDHCFRLSARVDGAPESMLRPWADVRAMRKERADLQQGASLAPAEEDPYASLNPLLDQLTAIQK
>NZ_LR699001.1|WP_012421083.1|1549490_1549772_-|hypothetical-protein
MNQDTTLQQEASVREARFKRRQLLRVFDTPDGRETLSFLEARFQTDLPVFQGSPGNYDPLDAMRRDAYREIFLYIRRQLQLAIKETTEEEKND
>NZ_LR699001.1|WP_102734017.1|1548616_1549498_-|hypothetical-protein
MIDSIDNSMAAPIRDAEGSGAVSPETDALSETAVQTEPFPPLLGEDGGFAPDWYARFDELKGMEKSLSKFKTPEALAKSYAELERLRRYPGVENEEQMARFRRLAGLPESEEEYRLERPESTPESEWNAGLAERMARTAYRYGVPPEAMNALQETMAQAYNEAREHMEDARMEMEMQAEQSLQQEWGSNYERNMGRAAAVLRRLASETGVDADALLDNPGLGSNPDAIRLLYQASRLLDEAPLHHTGNAAPSPAEEAMRMESDPSHPLYEAYMNVNHPNHRYANELYDRLTTR
>NZ_LR699001.1|WP_102734690.1|1547791_1548118_+|hypothetical-protein
MNDYDARTETLIYYTEYCQIAGLSIAPEKLLHDDIQKSVNTKGLCIWTPNLVFFAWEIGDRTLWVEHAIGYLSDLLPLASAYGPEWKVSYQHRNKIRHQNMHRLLGRL
>NZ_LR699001.1|WP_102734689.1|1546396_1547743_-|hypothetical-protein
MSNDELTFEYRDEFKRRVIAEKIINLLMDDEFSPMVLDGDWGVGKTEFCHKLINLIRADQSKEGGTNKNIPRCQCLYIDAFAEDHGDDPLLMLLGNIARFIKDKEGNGDSSERYQKWKNASIAVAKSCFKIGAKAAIGLLLKQNADSIGDEISDAIKKSAEEGVDAIVNDFLQQYEESNSNIETLKSILAELARDERMIIVVDELDRCRPDFSITLLEKIKHVFDVPNVSFLLVANMKQLSASVSHVYGEYVDSNRYLNKFLKLSVSLVPSLNIKNDLFFYFEYLVEKDDELKFFAKKYTGFSVSYLLRRNNHTLRDVEQFVRYLKVSVKMSRHGKITESPEAFRLLFVIVVYCYCFKRNIAYLILTDDVSADIIVNELKVNDGMSLKELSFLRNILECLDKKYENNHNKQKIDDLIKKFSSVLCDDLASIRNIARSFVEDMGFVKSI
>NZ_LR699001.1|WP_046435229.1|1546083_1546293_+|hypothetical-protein
MNKNYEFVYSRSHDEMRAKGTNIYVTQEGIHEWSAIRRPWNWTEQRHYSSTPSGAVNKLLRAEEKEGWR
>NZ_LR699001.1|WP_094136088.1|1554819_1555110_-|CRISPR-associated-endonuclease-Cas2
MYILITYDVATDDKAGQRRLRQVARACENVGQRVQNSVFECELTPAQLVDIRNKLLKIIDNESDSLRIYHMGSNWHHKIEQLGKEKSYDISGPLII
>NZ_LR699001.1|WP_102734057.1|1555124_1556144_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKHLNTLFVTLEGCWLSKDGDTVKVNAEGTCLLRVPLHNLEGIVTLGWDIGVSPYLMGACAERGITLSFCNPYGKFLAGVQGFMKGNILLRRDQYRWADDEARWVGVAREMIGAKIANCRSLLLRAQRTYGKDLSEEVDRLAAFCRMARGCNSGDMLRGIEGSAAETYFSCLSHCQRTEDPELVFESRNRRPPKDCFNALLSFLYSLLCHDARSALESSGIDAAAGFLHRDRPGRPGMALDLMEEFRAPLADRLALTLINRKQISSDDFDKEESGAVFLKEDSRKKVLNAWQERKKTVLVHPFLQEKTTLGLLIHIQALLLARHLRGDLDCYPPFIGK
>NZ_LR699001.1|WP_162852053.1|1556140_1556830_-|CRISPR-associated-protein-Cas4
MPVSVTMSVSCPYSVPLAALQHYLYCPRQCALIHLECCWEENQFTAEGKVFHERVDSGMTENRGRKRVLRSLHISSVQWGIHGIADVVEAVYVQKGSGVVSMTPVEYKVGKPKPHRADEVQVCAQALCLEEMFEIKVPFGFLFYGKNQRRLKVSFDEELRFLTARVIRDAREVLTGMVTPLPFYSKNCKSCSLVNDCLPDVCREHRQTMKARVDSVFEDSLETSEADDL
>NZ_LR699001.1|WP_161994025.1|1556932_1559317_+|CRISPR-associated-helicase-Cas3'
MNGENPPIAHRKWLDNGICVDEPLYTCPNDKGKIPGHLNMVRYYAGQLIKELPASLRGAWLYWVEAAALWHDLGKFSLEFQKYIKDKQISPHSTETVELNGGKKVDHSTAGAKHASTHWGTSKASYGDMLAYIIAGHHAGLPNGPDLFFERFHKKIPDWESYAPADLYSFTEPSPPRLWHEKSHTPDRNLGFAVAMQIRMLFSFLTDSDFLGTEHFMCQEKRDMRPSWPQNILAQMSLRLEAHLGNMESARNLTPIQRLRREIHHQCLSRAQVPQGIYQLNVPTGGGKTLSSLSFALAHAQHCHMSRVIYVIPFTSIIDQTAKTFREIMAPLDEKFGMECVLEHHSNLAADKDTERVRLMSENWDAPLIVTTSVQFFESLFSNKPSVCRKLHNITNSVIIFDEAQNLPSHLLAPCLEAMKTLEKDYGCTLVLCTATQPTLEHKKEFPIGWPAGELTSLLGNDFERRLENAMQRVTIQHLGRMDQNALIRHWNTLPDQSALFIVNTTREAQFLFDAFSSQSASHILHLSARLCPIHREKVIQTAKQKLEQGKNIILIATRVIEAGIDISFPTVYRACAGIDSIAQAAGRCNRHGEREGKGLVFVYESTDFPLPDILDDLRASASATREILAQEPEAALLSPEISNRFFRIYYNNRKNQTNLWDSKNIREMALLNPVSEKVFKSLRFKDINKSFKMIPDASHSVMITIDPEACHIRERLKILDSQGLYPNKSLRREIQRYSVQIYDREWVALQKHGMESYIDGTINILHPSPSVYDEHKGILSLQQSDPAYIGFIC
>NZ_LR699001.1|WP_102734060.1|1559319_1560033_+|type-I-C-CRISPR-associated-protein-Cas5
MTETGILLHVWGEWACFTRPELKAERYSYEVMTPSAAIGILSAIYWKPEIRWHIDKIHVLKPIKLVSIRRNEVSAKATPPKSDVIKNGGEARLGLLVEETRQQRSSTILQDVDYLIEAHFSVLKEQENINTQAKHYEMFKRRAMKGQSFHQPYFGTREFPVSFEWWDQSTPPPSSLPPDQQNRNLGMMLHEVEFVPDKKGKIISSLDGKKLSAVPHFFPAELKSGILHVPSLNRTNS
>NZ_LR699001.1|WP_102734693.1|1560034_1561855_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIIPALTQLYDRLSQDPEVMEKGDLPTMGKSRQKISFRIILKPDGTLVSMDDIRAIDKPLGKKVAKPHSIPILVLGANKSSGSGLNPCFLWDNCGYLLGYKGVTEEKEKKRIREAFSSFRDKHLAVESSVNHPHFSAVCRFLEQWDPDLTPSLLPSPDLWISNGIFRITGEMHDVHEIPEIQKWWFHRGAEEWQGSKKEKAQGICLVSGKEEPLALLHEPAIKGIPGAQVSGAKIVSFNCASFTSYGKEQSLNAPVGENTAFSYCNALNYLLSHSQYNTRLGDTTVVFWADAPRETMDMEAFLFGSVTADKPLPPAVDRTTLDKISKITNLLRKGELSKSKLDDADVPFFILGISPNASRLFIRFWNQSTFGKLMENIQAHYRDISLARQWTEENSKHPDPELPKPYDILKETVRDAKEIPSLYSGVLMKSILSRLPYPDIIAQAIIRRCRIDKKINYIRCSFLKGWLYRKTNNHDLTTMQTINPDNHNIGYLLGRLFAIYVKTQEDALGHNLNRTIRDSYFSSMSAHPRSVLPTINKLYQHHLRLIKQNHGEGAKINREKLVQEIKSHMPDIPPAHLGLEQQAYFDLGFYHQMNDFFTSKDKEAS
>NZ_LR699001.1|WP_172621306.1|1561882_1562743_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MNKIDFLILFDVTDANPNGDPDAGNLPRMDAESGHGLITDVCLKRKVRNFIQLTRDGEPSYEIYVKEKAILNNQQSRAYQALDINQKDAKQADYDKAKSWMCQTFFDIRTFGAVMTTGVNCGQVRGPIQISFARSIDPVSTSEFAVTRCAVTTEAEAIKQKGDNRTMGRKFTLPYALYKTQGCLNPFLAKQTGFSEKDWNIFQDALVHLFDFDASAARPSGSMAIRKIVLFKHDSELGNAPAHKLFDAVSVIKHENVEFPRSIKDYDIIVNRALIPSGITIEEIDC
>NZ_LR699001.1|WP_102734101.1|1563577_1564732_-|acyltransferase
MNTNQSLNSRGSHIAWVDFLRILACFLVVLAHCCDPFVGSFDGSFNFKSAVFWGSLVRPCVPLFAMISGVLLFPVTLEMGAFYSRRLKRVLVPLIVWSLALPLLYFGYFDAGVQTSSPNIVMDTYTWSATVGKLYTFFFNFNYDTTPLWYVYMLVGLYLFMPIMSAWLTQARRKDVKIFLGIWIFSMTLPYIQMLAPALGYEGNYGNMGILGVCDWNPYGMFYNFSGFLGYMVLAHYLTKYPLAWSWKKTLSITIPFFLIGFAVTFFGFLETQKHFPGQYSKLEVLWYFSGINVFLMTFAIFTIVSRLRIKAGPVLSKVAALTFGVYLCHFFFVQCSYDFVNFIGLGGLPSAVKIPLMACLASAVSAALVWLLSLNRWTRKSIM
>NZ_LR699001.1|WP_102734694.1|1565195_1568777_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MTDSSIPDMMAEARRGQWTDQQLAAKAVELAESILKQSNAGMRGKEKRQAQQMERMMNDPAGKAFTLALADRVFRPSSPARGAELFRYLLDGYGVPRYLSAADRFAMKMGGRFSAQFPGVVMPMITSQLRKESSNVILPAEDGKLRPHLRRRRKGGIRMNINQLGEAILGESEAHHRLQQVVDRLTDKDCDYISVKISAIFSQIHLVAFEETVKLIQERLRILYRAAITNAVTLPDGSRKPKFVNLDMEEYRDLHMTAEAFKRTLMEDEFMQLEAGIVLQAYLPDSWEEQMKLCAWAKERVEQGGARIKIRLVKGANLAMEKVEASMHGWAQAPYGTKAQVDANYKRMLHYGCMPDNARYVQFGVASHNLFDLCYAMLLREREGVRDQVEFEMLEGMANHQARVIRQAADGLLLYAPVVLKEDFHSAIAYLVRRLDENTSEENFLHDLFGMTPGSRSWEVQKKRFLKACQEKDEVKYGPNRTQNRAADPIQPSHYRDAFANERDTDWSLRQNAEWINGLIAAEKEKSGEEIPLVIDGEEITTNLWGVGRDPSRHNEVSYKFAYADFDQVEHALVTADRVRSSWASKSIGERAEILHRAAQELSRIRGEAIAAMVRDAGKAPTEADVEVSEAIDFCRYYAEGLDRDGMNDGVEMSPLGTICVMSPWNFPFAIPTGGVAAALMAGNAVVFKPSELAVYTAWQIVQAFWRAGVPKNVLQFVPMPRNEISRKFLMDPRLNGVIMTGSYRTGKMLRELRPDLHVLAETSGKDAMIITATADPDQAVKDLVKSAFGHSGQKCSAASVAIVEASVYDNPAFLRQLKDAAASLKVGGSWEVNSVVTPLIREPEGNLLRALTQLEPGEEWLLKPEPSEDNPCLWSPGIRLGVKPGSWFHQTECFGPVLGIIRAENLEEAIDIQNDSEFGLTGGLQSLDEREIALWKTKVQVGNAYINRVITGAIVRRQPFGGWNHSSMGPGAKAGGPNYLTMLGSWEEKALPQKLRTPGERISGLVEKLCSELPDCAKRIRSAAGSQAKWWMEEFGVDHDPSRVYGENNIFRYTPVKGILARVENMSDDDVAILLLGAKLCGVLLHLSIGASRPWIQKMHGYYASLSVETEAELIGRMPEALQGVRFLRGTDISEALVNAAHARDVEVLDRPVLANGRVELLGYFREQAVSETVHRYGNLIPPPGSFKTDSV
>NZ_LR699001.1|WP_128153556.1|1568935_1569913_-|hypothetical-protein
MRTLAVIAFLALAFPGRAEMDALSVSCSAAPSLPSPVLVVYGSEEPGSAEARWLKALQPGTEERRALDEYVRDVQFVTVPRHPSVKDWEENGSLSRAAMHGVRMLPSVVFLDSKGRVFDLVEGGASAASLREKVSLLAEKAQRVRPVTRVNDIPKGGDPAAEASAICRELEQVPPEAWFRDYPGTMKRLEKLNCTVPAFLNAREAAFRLEKNRKTAELLGESFRACKASSIRTCLEAWRACADDPSLSVEERQLILLSMVHPLWVRLEEVLYREAHTPESEDAFNQAVAVLEEVRDMNRSSVCGRRAHQLREELRRARLAAARYD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR699001_3	3.4\|1553619\|33\|NZ_LR699001\|CRT,CRISPRCasFinder	1553619-1553651	33	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	141785-141817	6	0.818
NZ_LR699001_3	3.21\|1553623\|33\|NZ_LR699001\|PILER-CR	1553623-1553655	33	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	141785-141817	6	0.818
NZ_LR699001_2	2.4\|1028177\|34\|NZ_LR699001\|PILER-CR,CRISPRCasFinder,CRT	1028177-1028210	34	KU886268	Freshwater phage uvFW-CGR-AMD-COM-C203, complete genome	22747-22780	8	0.765
NZ_LR699001_3	3.8\|1553886\|33\|NZ_LR699001\|CRT,CRISPRCasFinder	1553886-1553918	33	NZ_CP028286	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence	7390-7422	8	0.758
NZ_LR699001_3	3.11\|1554085\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554085-1554118	34	NC_015969	UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS02, complete sequence	9577-9610	8	0.765
NZ_LR699001_3	3.25\|1553898\|33\|NZ_LR699001\|PILER-CR	1553898-1553930	33	NZ_CP028286	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence	7390-7422	8	0.758
NZ_LR699001_3	3.28\|1554103\|34\|NZ_LR699001\|PILER-CR	1554103-1554136	34	NC_015969	UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS02, complete sequence	9577-9610	8	0.765
NZ_LR699001_2	2.6\|1028307\|34\|NZ_LR699001\|PILER-CR,CRISPRCasFinder,CRT	1028307-1028340	34	NC_014305	Erwinia billingiae Eb661 plasmid pEB170, complete sequence	14596-14629	9	0.735
NZ_LR699001_2	2.12\|1028697\|34\|NZ_LR699001\|PILER-CR,CRISPRCasFinder,CRT	1028697-1028730	34	LR135896	uncultured phage genomic DNA containing rbcL region region	80967-81000	9	0.735
NZ_LR699001_2	2.15\|1028892\|34\|NZ_LR699001\|PILER-CR,CRISPRCasFinder,CRT	1028892-1028925	34	AP018320	Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome	158967-159000	9	0.735
NZ_LR699001_3	3.8\|1553886\|33\|NZ_LR699001\|CRT,CRISPRCasFinder	1553886-1553918	33	AJ131519	Lactobacillus bacteriophage phi adh complete genome	21349-21381	9	0.727
NZ_LR699001_3	3.8\|1553886\|33\|NZ_LR699001\|CRT,CRISPRCasFinder	1553886-1553918	33	NC_000896	Lactobacillus prophage phiadh, complete genome	21349-21381	9	0.727
NZ_LR699001_3	3.8\|1553886\|33\|NZ_LR699001\|CRT,CRISPRCasFinder	1553886-1553918	33	MK448686	Streptococcus phage Javan157, complete genome	21611-21643	9	0.727
NZ_LR699001_3	3.25\|1553898\|33\|NZ_LR699001\|PILER-CR	1553898-1553930	33	AJ131519	Lactobacillus bacteriophage phi adh complete genome	21349-21381	9	0.727
NZ_LR699001_3	3.25\|1553898\|33\|NZ_LR699001\|PILER-CR	1553898-1553930	33	NC_000896	Lactobacillus prophage phiadh, complete genome	21349-21381	9	0.727
NZ_LR699001_3	3.25\|1553898\|33\|NZ_LR699001\|PILER-CR	1553898-1553930	33	MK448686	Streptococcus phage Javan157, complete genome	21611-21643	9	0.727
NZ_LR699001_3	3.12\|1554152\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554152-1554185	34	KY926699	Lactococcus phage PLgY-30, complete genome	17146-17179	10	0.706
NZ_LR699001_3	3.12\|1554152\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554152-1554185	34	KY888143	Lactococcus phage PLgW-1, complete genome	17968-18001	10	0.706
NZ_LR699001_3	3.12\|1554152\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554152-1554185	34	KY926698	Lactococcus phage PLgY-16, complete genome	17204-17237	10	0.706
NZ_LR699001_3	3.13\|1554219\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554219-1554252	34	MN175388	Cronobacter sp. strain CR-13-12 plasmid pCR-13-12-NDM-1, complete sequence	32912-32945	11	0.676
NZ_LR699001_3	3.13\|1554219\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554219-1554252	34	NZ_CP048111	Klebsiella michiganensis strain BD177 plasmid unnamed3	156461-156494	11	0.676
NZ_LR699001_3	3.13\|1554219\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554219-1554252	34	NZ_MF190369	Enterobacter cloacae strain A1137 plasmid pA1137, complete sequence	15933-15966	11	0.676
NZ_LR699001_3	3.13\|1554219\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554219-1554252	34	NZ_CP021538	Escherichia coli strain AR_0119 plasmid unitig_4, complete sequence	3606-3639	11	0.676
NZ_LR699001_3	3.13\|1554219\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554219-1554252	34	NZ_CP030345	Enterobacter hormaechei strain AR_038 plasmid unnamed1	6087-6120	11	0.676
NZ_LR699001_3	3.13\|1554219\|34\|NZ_LR699001\|CRT,CRISPRCasFinder	1554219-1554252	34	NZ_CP030345	Enterobacter hormaechei strain AR_038 plasmid unnamed1	128003-128036	11	0.676

1. spacer 3.4|1553619|33|NZ_LR699001|CRT,CRISPRCasFinder matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 6, identity: 0.818

aataggcaaccgggcggcctgcctcgctctcta	CRISPR spacer
cataggccaccgggcggccggcctcgcacacca	Protospacer
 ****** *********** ******* * *.*

2. spacer 3.21|1553623|33|NZ_LR699001|PILER-CR matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 6, identity: 0.818

aataggcaaccgggcggcctgcctcgctctcta	CRISPR spacer
cataggccaccgggcggccggcctcgcacacca	Protospacer
 ****** *********** ******* * *.*

3. spacer 2.4|1028177|34|NZ_LR699001|PILER-CR,CRISPRCasFinder,CRT matches to KU886268 (Freshwater phage uvFW-CGR-AMD-COM-C203, complete genome) position: , mismatch: 8, identity: 0.765

aaagccaaaagaagccaaaagaagccaaaagaag	CRISPR spacer
catcgaaaaagaagccaaaggaagccaaatgaaa	Protospacer
 *    *************.********* ***.

4. spacer 3.8|1553886|33|NZ_LR699001|CRT,CRISPRCasFinder matches to NZ_CP028286 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
aagaaatataacaatggataatcagttctacgg	Protospacer
******** *******.*******. ** *

5. spacer 3.11|1554085|34|NZ_LR699001|CRT,CRISPRCasFinder matches to NC_015969 (UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS02, complete sequence) position: , mismatch: 8, identity: 0.765

gattccgttgctggtggaggggtcaggccgtccg	CRISPR spacer
caagcccgcgctggcggaggggtcaggccgtgcg	Protospacer
 *  **  .*****.**************** **

6. spacer 3.25|1553898|33|NZ_LR699001|PILER-CR matches to NZ_CP028286 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
aagaaatataacaatggataatcagttctacgg	Protospacer
******** *******.*******. ** *

7. spacer 3.28|1554103|34|NZ_LR699001|PILER-CR matches to NC_015969 (UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS02, complete sequence) position: , mismatch: 8, identity: 0.765

gattccgttgctggtggaggggtcaggccgtccg	CRISPR spacer
caagcccgcgctggcggaggggtcaggccgtgcg	Protospacer
 *  **  .*****.**************** **

8. spacer 2.6|1028307|34|NZ_LR699001|PILER-CR,CRISPRCasFinder,CRT matches to NC_014305 (Erwinia billingiae Eb661 plasmid pEB170, complete sequence) position: , mismatch: 9, identity: 0.735

----ctactaaacctatcggaattgtgattgaaggcat	CRISPR spacer
tgcgctgc----attatcggtattgtgattgcaggcat	Protospacer
    **.*     .****** ********** ******

9. spacer 2.12|1028697|34|NZ_LR699001|PILER-CR,CRISPRCasFinder,CRT matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 9, identity: 0.735

tatagccaattgtgagagtttccggtttgtaaca	CRISPR spacer
taaagccaattgtgggagtttccgatgtagctga	Protospacer
** ***********.*********.* *.    *

10. spacer 2.15|1028892|34|NZ_LR699001|PILER-CR,CRISPRCasFinder,CRT matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.735

acattatatcataaaaataagagagttatgaaca	CRISPR spacer
caggtataacatagaaataagagagttatgatgt	Protospacer
  . **** ****.*****************

11. spacer 3.8|1553886|33|NZ_LR699001|CRT,CRISPRCasFinder matches to AJ131519 (Lactobacillus bacteriophage phi adh complete genome) position: , mismatch: 9, identity: 0.727

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
ttatcagaaaacattgaataatcaaatccaata	Protospacer
  .  * ****** ************** ***

12. spacer 3.8|1553886|33|NZ_LR699001|CRT,CRISPRCasFinder matches to NC_000896 (Lactobacillus prophage phiadh, complete genome) position: , mismatch: 9, identity: 0.727

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
ttatcagaaaacattgaataatcaaatccaata	Protospacer
  .  * ****** ************** ***

13. spacer 3.8|1553886|33|NZ_LR699001|CRT,CRISPRCasFinder matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 9, identity: 0.727

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
acaggagaaaacaatgaataaacgaatcaaaaa	Protospacer
* ...* ************** *.*******

14. spacer 3.25|1553898|33|NZ_LR699001|PILER-CR matches to AJ131519 (Lactobacillus bacteriophage phi adh complete genome) position: , mismatch: 9, identity: 0.727

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
ttatcagaaaacattgaataatcaaatccaata	Protospacer
  .  * ****** ************** ***

15. spacer 3.25|1553898|33|NZ_LR699001|PILER-CR matches to NC_000896 (Lactobacillus prophage phiadh, complete genome) position: , mismatch: 9, identity: 0.727

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
ttatcagaaaacattgaataatcaaatccaata	Protospacer
  .  * ****** ************** ***

16. spacer 3.25|1553898|33|NZ_LR699001|PILER-CR matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 9, identity: 0.727

aagaaataaaacaatgaataatcaaatcaaatt	CRISPR spacer
acaggagaaaacaatgaataaacgaatcaaaaa	Protospacer
* ...* ************** *.*******

17. spacer 3.12|1554152|34|NZ_LR699001|CRT,CRISPRCasFinder matches to KY926699 (Lactococcus phage PLgY-30, complete genome) position: , mismatch: 10, identity: 0.706

taaactaaaaccactaaagaaaggaaacaattat	CRISPR spacer
ccaaccaaaaccacaaaagaaaggaaaagacatg	Protospacer
. ***.******** ************ .*.

18. spacer 3.12|1554152|34|NZ_LR699001|CRT,CRISPRCasFinder matches to KY888143 (Lactococcus phage PLgW-1, complete genome) position: , mismatch: 10, identity: 0.706

taaactaaaaccactaaagaaaggaaacaattat	CRISPR spacer
ccaaccaaaaccacaaaagaaaggaaaagacatg	Protospacer
. ***.******** ************ .*.

19. spacer 3.12|1554152|34|NZ_LR699001|CRT,CRISPRCasFinder matches to KY926698 (Lactococcus phage PLgY-16, complete genome) position: , mismatch: 10, identity: 0.706

taaactaaaaccactaaagaaaggaaacaattat	CRISPR spacer
ccaaccaaaaccacaaaagaaaggaaaagacatg	Protospacer
. ***.******** ************ .*.

20. spacer 3.13|1554219|34|NZ_LR699001|CRT,CRISPRCasFinder matches to MN175388 (Cronobacter sp. strain CR-13-12 plasmid pCR-13-12-NDM-1, complete sequence) position: , mismatch: 11, identity: 0.676

tttagtggttttgttattcagcatcagggatatt	CRISPR spacer
ggccgtggtttttttattcagcaacaggagtgca	Protospacer
  . ******** ********** ****..*..

21. spacer 3.13|1554219|34|NZ_LR699001|CRT,CRISPRCasFinder matches to NZ_CP048111 (Klebsiella michiganensis strain BD177 plasmid unnamed3) position: , mismatch: 11, identity: 0.676

tttagtggttttgttattcagcatcagggatatt	CRISPR spacer
ggccgtggtttttttattcagcaacaggagtgca	Protospacer
  . ******** ********** ****..*..

22. spacer 3.13|1554219|34|NZ_LR699001|CRT,CRISPRCasFinder matches to NZ_MF190369 (Enterobacter cloacae strain A1137 plasmid pA1137, complete sequence) position: , mismatch: 11, identity: 0.676

tttagtggttttgttattcagcatcagggatatt	CRISPR spacer
ggccgtggtttttttattcagcaacaggagtgca	Protospacer
  . ******** ********** ****..*..

23. spacer 3.13|1554219|34|NZ_LR699001|CRT,CRISPRCasFinder matches to NZ_CP021538 (Escherichia coli strain AR_0119 plasmid unitig_4, complete sequence) position: , mismatch: 11, identity: 0.676

tttagtggttttgttattcagcatcagggatatt	CRISPR spacer
ggccgtggtttttttattcagcaacaggagtgca	Protospacer
  . ******** ********** ****..*..

24. spacer 3.13|1554219|34|NZ_LR699001|CRT,CRISPRCasFinder matches to NZ_CP030345 (Enterobacter hormaechei strain AR_038 plasmid unnamed1) position: , mismatch: 11, identity: 0.676

tttagtggttttgttattcagcatcagggatatt	CRISPR spacer
ggccgtggtttttttattcagcaacaggagtgca	Protospacer
  . ******** ********** ****..*..

25. spacer 3.13|1554219|34|NZ_LR699001|CRT,CRISPRCasFinder matches to NZ_CP030345 (Enterobacter hormaechei strain AR_038 plasmid unnamed1) position: , mismatch: 11, identity: 0.676

tttagtggttttgttattcagcatcagggatatt	CRISPR spacer
ggccgtggtttttttattcagcaacaggagtgca	Protospacer
  . ******** ********** ****..*..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR699001

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection