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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LR699010 Lachnoanaerobaculum umeaense isolate MGYG-HGUT-02522 chromosome 1 10 crisprs cas3HD,csx1,WYL,cas6,cas3,DEDDh,cas2,cas1,csm3gr7,csx19,cas10,csx20,csa3,csm5gr7,csm4gr5,csm2gr11,csm6 0 1 5 0

Results visualization

1. NZ_LR699010
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_1 335505-335648 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_2 335745-336007 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_3 678498-678589 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_4 829118-829219 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_5 1537755-1538541 TypeIII NA
11 spacers
cas2,cas1,csm3gr7,csx19,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_6 1543201-1543930 TypeIII NA
9 spacers
cas1,cas2,csm3gr7,csx19,cas10,csx20,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_7 1545736-1547779 TypeIII NA
28 spacers
cas1,cas2,csm3gr7,csx19,cas10,csx20,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_8 1558094-1559135 TypeIII NA
14 spacers
csx20,cas10,csm3gr7,csx19,cas1,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_9 1568560-1568707 TypeIII NA
1 spacers
csx1,csx20,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR699010_10 2271630-2272032 TypeIII NA
5 spacers
cas2,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,csm6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LR699010_2 2.3|335888|37|NZ_LR699010|CRISPRCasFinder 335888-335924 37 NC_012226 Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence 10166-10202 10 0.73
NZ_LR699010_2 2.3|335888|37|NZ_LR699010|CRISPRCasFinder 335888-335924 37 NZ_CP019601 Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence 27722-27758 10 0.73

1. spacer 2.3|335888|37|NZ_LR699010|CRISPRCasFinder matches to NC_012226 (Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence) position: , mismatch: 10, identity: 0.73

aaggat-----ataggaagtaattatcttttccttctataag	CRISPR spacer
-----ttcttattaaaaagtaattatctttactttctataag	Protospacer
     *      **..************** *.*********

2. spacer 2.3|335888|37|NZ_LR699010|CRISPRCasFinder matches to NZ_CP019601 (Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence) position: , mismatch: 10, identity: 0.73

aaggat-----ataggaagtaattatcttttccttctataag	CRISPR spacer
-----ttcttattaaaaagtaattatctttactttctataag	Protospacer
     *      **..************** *.*********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 917469 : 927575 8 Bacillus_phage(33.33%) integrase attL 918640:918660|attR 920480:920500
DBSCAN-SWA_2 1051927 : 1060091 11 Clostridium_phage(33.33%) integrase attL 1051907:1051924|attR 1060694:1060711
DBSCAN-SWA_3 1912757 : 2038600 134 Clostridium_phage(33.33%) capsid,transposase,plate,tRNA,portal,integrase,holin,tail,terminase,coat attL 1988954:1988969|attR 2017050:2017065
DBSCAN-SWA_4 2102239 : 2153828 72 Faecalibacterium_phage(42.86%) plate,terminase,portal,integrase,head,holin,tail,protease,transposase attL 2109997:2110019|attR 2154329:2154351
DBSCAN-SWA_5 2508429 : 2574203 58 Planktothrix_phage(23.08%) protease,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage