CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR699017	Faecalibacterium prausnitzii isolate MGYG-HGUT-02545 chromosome 1	6 crisprs	DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,WYL,csa3,PD-DExK,DEDDh	0	14	3	0

1. NZ_LR699017

CRISPR-Cas detection and classification

Crispr_ID: NZ_LR699017_1

• CRISPR_ID: NZ_LR699017_1
• CRISPR_location: 333743-333820
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LR699017_1

Consensus_repeat	Method
CTGACTGACCCTTACCCATTTTCT	CRISPRCasFinder

spacers of NZ_LR699017_1

>1.1|333767|30|NZ_LR699017|CRISPRCasFinder
TGTCTTCCAATCTCCTTCCCAATCCGGCGG

CRISPR arrays and Neighbor proteins around NZ_LR699017_1

CRISPR arrays

The CRISPR arrays of NZ_LR699017_1

>merge|NZ_LR699017|1|333743-333820|CRISPRCasFinder
CTGACTGACCCTTACCCATTTTCTTGTCTTCCAATCTCCTTCCCAATCCGGCGGCTGACTGACCCTTATCCATTTTCT

>NZ_LR699017|1|1|333743-333820|CRISPRCasFinder
CTGACTGACCCTTACCCATTTTCT	TGTCTTCCAATCTCCTTCCCAATCCGGCGG
CTGACTGACCCTTATCCATTTTCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699017.1|WP_158394656.1|326604_327813_-|sodium-ion-translocating-decarboxylase-subunit-beta	unknown	unknown	gnl|CDD|377182
NZ_LR699017.1|WP_149795300.1|323004_323784_-|FAD-dependent-thymidylate-synthase	unknown	unknown	gnl|CDD|234847
NZ_LR699017.1|WP_158394663.1|340528_341569_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158394666.1|344459_345008_+|DUF1836-domain-containing-protein	unknown	unknown	gnl|CDD|378076
NZ_LR699017.1|WP_158394660.1|336029_337799_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158394658.1|332069_333422_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240543
NZ_LR699017.1|WP_158397221.1|338761_339409_-|amino-acid-ABC-transporter-permease	unknown	unknown	gnl|CDD|223836
NZ_LR699017.1|WP_149795303.1|327828_328194_-|OadG-family-protein	unknown	unknown	gnl|CDD|377277
NZ_LR699017.1|WP_158394662.1|339449_340289_-|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270217
NZ_LR699017.1|WP_149795304.1|328346_329372_-|rod-shape-determining-protein	unknown	unknown	gnl|CDD|212668
NZ_LR699017.1|WP_158394664.1|341850_343389_-|cardiolipin-synthase	unknown	unknown	gnl|CDD|197251
NZ_LR699017.1|WP_158394665.1|343463_344300_-|DegV-family-protein	unknown	unknown	gnl|CDD|273257
NZ_LR699017.1|WP_158394655.1|323790_326454_-|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|273429
NZ_LR699017.1|WP_158394667.1|345065_346187_-|peptide-chain-release-factor-2	unknown	unknown	gnl|CDD|234799
NZ_LR699017.1|WP_158394653.1|321494_322310_-|hypothetical-protein	unknown	unknown	gnl|CDD|379240
NZ_LR699017.1|WP_158394661.1|337963_338746_-|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224051
NZ_LR699017.1|WP_158394657.1|329743_331966_-|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl|CDD|273632
NZ_LR699017.1|WP_158394668.1|346620_347583_+|DUF2628-domain-containing-protein	unknown	unknown	gnl|CDD|373073
NZ_LR699017.1|WP_158394652.1|320336_321470_-|endolytic-transglycosylase-MltG	unknown	unknown	gnl|CDD|376862
NZ_LR699017.1|WP_158394654.1|322336_323008_-|deoxynucleoside-kinase	unknown	unknown	gnl|CDD|223203

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR699017.1|WP_158394656.1|326604_327813_-|sodium-ion-translocating-decarboxylase-subunit-beta	gnl|CDD|377182	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit. Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.	0
NZ_LR699017.1|WP_149795300.1|323004_323784_-|FAD-dependent-thymidylate-synthase	gnl|CDD|234847	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed.	4.20655e-89
NZ_LR699017.1|WP_158394666.1|344459_345008_+|DUF1836-domain-containing-protein	gnl|CDD|378076	pfam08876, DUF1836, Domain of unknown function (DUF1836). This family of proteins are functionally uncharacterized.	3.56968e-37
NZ_LR699017.1|WP_158394664.1|341850_343389_-|cardiolipin-synthase	gnl|CDD|197251	cd09154, PLDc_SMU_988_like_1, Putative catalytic domain, repeat 1, of Streptococcus mutans uncharacterized protein SMU_988 and similar proteins. Putative catalytic domain, repeat 1, of Streptococcus mutans uncharacterized protein SMU_988 and similar proteins. Although SMU_988 and similar proteins have not been functionally characterized, members in this subfamily show high sequence homology to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	3.66416e-100
NZ_LR699017.1|WP_158394658.1|332069_333422_-|MATE-family-efflux-transporter	gnl|CDD|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	3.8703e-118
NZ_LR699017.1|WP_158397221.1|338761_339409_-|amino-acid-ABC-transporter-permease	gnl|CDD|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	9.51663e-55
NZ_LR699017.1|WP_149795303.1|327828_328194_-|OadG-family-protein	gnl|CDD|377277	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain.	7.29938e-08
NZ_LR699017.1|WP_158394662.1|339449_340289_-|amino-acid-ABC-transporter-substrate-binding-protein	gnl|CDD|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.54125e-84
NZ_LR699017.1|WP_149795304.1|328346_329372_-|rod-shape-determining-protein	gnl|CDD|212668	cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes.	1.38783e-154
NZ_LR699017.1|WP_158394668.1|346620_347583_+|DUF2628-domain-containing-protein	gnl|CDD|373073	pfam14446, Prok-RING_1, Prokaryotic RING finger family 1. RING finger family found sporadically in bacteria and archaea, and associated in gene neighborhoods with other components of the ubiquitin-based signaling and degradation system, including ubiquitin, the E1 and E2 proteins and the JAB-like metallopeptidase. The bacterial versions contain transmembrane helices.	1.63847e-23
NZ_LR699017.1|WP_158394665.1|343463_344300_-|DegV-family-protein	gnl|CDD|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.86051e-57
NZ_LR699017.1|WP_158394655.1|323790_326454_-|UvrD-helicase-domain-containing-protein	gnl|CDD|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LR699017.1|WP_158394667.1|345065_346187_-|peptide-chain-release-factor-2	gnl|CDD|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_LR699017.1|WP_158394653.1|321494_322310_-|hypothetical-protein	gnl|CDD|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	0.00760718
NZ_LR699017.1|WP_158394661.1|337963_338746_-|amino-acid-ABC-transporter-ATP-binding-protein	gnl|CDD|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.4186e-126
NZ_LR699017.1|WP_158394657.1|329743_331966_-|ATP-dependent-RecD-like-DNA-helicase	gnl|CDD|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	7.49453e-169
NZ_LR699017.1|WP_158394652.1|320336_321470_-|endolytic-transglycosylase-MltG	gnl|CDD|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	4.41916e-78
NZ_LR699017.1|WP_158394654.1|322336_323008_-|deoxynucleoside-kinase	gnl|CDD|223203	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism].	5.80904e-29

Protein sequences

>NZ_LR699017.1|WP_158394658.1|332069_333422_-|MATE-family-efflux-transporter
MTKDMTQGSPLKLILAFAVPLMLGSLFQQFYNLADTIIVGRFVGVDALAAVGSVGGLNYLVLGFVNGIACGFSIPISWTFGAKDYREMRRYTANTVWLSLFFAVVLTVVTVALTRAVLVWTNTPDNIIDIADIYIRTIFWGIPFTLLYNVTSALMRALGDSKRPLYFLLVASVLNIGLDLLCILIFRMGAFGAAFATVFSQAVAGIGSLIYIGRHYPELKWSREEGRLSASHCLKLCNMGIPMGLQCSITAIGSVVLQGAVNGLGSSIVAAQTAGSKAAQFLSVPLESIGTAMTTYASQNMGAHDLKRVDRGVNTALGIGCVYSVASFLILRVLDVPLISLFLESSEVEIMANARSFIFWNSVFYIPLAVLIIYRYTIQGLGYSGLAMFAGVAEMVARAMVGFWFVPLWGYFAACIANPVAWFFACFFLIPAYFAVRNRLMKENAYGVGD
>NZ_LR699017.1|WP_158394657.1|329743_331966_-|ATP-dependent-RecD-like-DNA-helicase
MEQELERLEGTVEDIIYLNEDNGYTVFEVSGGGVVTVVCGVVGELHAGESVVCRGRYENHATYGRQFHAQECETDMPKDLEAVYAFLASRSLPYIGARTADKIIDKFGAAALEVIANDPAQLTLIPGISADKADRIQQEFKRMFGMRELIAYLAQFEISPRRAMEVFRTFGPGAMQAIQQNPYLLCGEPLQLDFRHADSIAQYYQMAGDCAQRLEAALLRTLRHNAGNGHTCLPRAQLLETASNFIHQPPEKLAAALDSCIQTGKLAVRMFDDTPYIYLPDLLAAEQDIADRLAMLTKRGKQTAHGLDKNIQILELAQGFAYAPLQKEAIRKAMTENCLVLTGGPGTGKTTTVNAILQLLENEAERVALCAPTGRAAKRLSELTGRKASTIHRLLEVDYTGGVVSFIHNDKNLLKCDVVILDEMSMVDVKLFQALIAALRYSCRIIMVGDADQLPSVGPGNILGEIIRSGLVPTVCLNEIFRQAAQSLIVENAHHIISGEPLKKGGKTDDFFFLEADGDAAQKLVCDLVTTRLPRSYQFDPVKDIQVLCPTKLGPTGTQALNAELQAMLNPPRKGKPELQSAARVFRVGDKVMQVRNNYEITWQRIGGEQGVGAYNGDIGIVESIDVRSRSMVVRMDDRRLVYPAENLNELEIAYAITVHKSQGSEFPAVILPAAQVPPRLCYRNLFYTGVTRGRKLCIVVGRRDVVNRMMSNIRQNLRYSGLAALLAQALPPGRENLSD
>NZ_LR699017.1|WP_149795304.1|328346_329372_-|rod-shape-determining-protein
MAQNDIGIDLGTTTIIIAQEGQGVVLNQPSVVAVDTRKNCVLEAGDKALAMVGRTPNYISAIFPLKDGVISDHTMTRELICRFVNQVYSSHMVKPRVAVCVPAAITGIESDAVVEAVMAAGARQVYLIDEPIAAALGSGIDITVPDGRMIIDIGGGTTDIAVLSLGGKVKATSVRVAGNHYDEEILKFVRNKFSIAIGQRTAENLKKNVACCPQKADFNETMEIKGRSLLTGLPVRVNVSTADLYEPVMRLSEQIGTAAHQVLEKTPPELAGDIYRNGVVLTGGGAQLHGLPEYLSQELKVEVTVSPDPVNCVALGTAMSLRLGDKLETGFMDATPRMGRR
>NZ_LR699017.1|WP_149795303.1|327828_328194_-|OadG-family-protein
MDLGYDVIVTITGIVLVFLILVLLMAIITLEGKIFDAMNGKKAAAKAASAAKPAAPVKQAAAPAPAKAAAPQVEAGIPGDVVAAIMAAIYSMGNGKYVLKAVRRGKNGWGKAGVNDTTAPF
>NZ_LR699017.1|WP_158394656.1|326604_327813_-|sodium-ion-translocating-decarboxylase-subunit-beta
MTQFIETLVGIFQSSGFAKFGEPGGWLYAVMICVGCFLLYLAIVKEFEPLILLPMAFGMILANLPGSGVIHMQYFVGDGLEHPMWVEILNNGGLADMLYMGVKLGIYPPLIFLGIGTMTDFAPLISNPKSLLLGAAAQFGIFGTYMGARLLAATGLVDFTQKQSAAISIIGGADGPTAIFVTSRLAPELLGSIAVAAYSYMALVPVIQPPIMKALTSKKERTVVMKQLRTVTKTERVIFPIMVTIIVSLIVPDAAVLVGMLMLGNLMKECGVVDRIQKTAGNELMNIITIFLALSVGCTTSANTFLNSRTLFIIVLGLIAFSFGTAAGVLCGKVMYILTGGQVNPLIGSAGVSAVPMAARVSQKVGQSENPSNFLLMHAMGPNVAGVIGSAVAAGILINIFG
>NZ_LR699017.1|WP_158394655.1|323790_326454_-|UvrD-helicase-domain-containing-protein
MATDLAQQFCALRDTYIEKQFGRLNDMQREAVFTTNGPLLILAGAGSGKTTVLVNRIANLIRFGSAHGSRWTPREVTEDDVKALRTAIMTGTDAPSWLDGMLRKDAVRSWNVMAITFTNKAAGELKERLRRMLGGEEGDEVFASTFHSACVRILRRWAEEIGYPRSFTIYDSDDSQRVMKTVYKELSVDDKFFPVKSAINQMSRWKDQLISPAEALKTPARDTKGALAAKVYAAYEKKLKEAGAFDFDDLIYQTVILLSEHEDVREFYQNKYKYLLVDEYQDTSVAQFRLVSLLTGPEKNICVVGDDDQSIYRFRGATIENILNFERIYKGTKTIRLEQNYRSTSNILNAANCVIQHNTERKGKTLWTKNGEGDKVQVYTAENEQDEASHIADVIGQHLKEGGHLADHAILYRMNAQSAPIESYFTRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARKIGTTTIEVIADLAAQQGISMLDVISHADQYAKLSRAIAPLFKFWDIYQKLQESLETKTLDEFASDVIEITGYRAMLEADAAKGHEDAADRLQNLGQLVNNVKSYCDQHGEEASLEGYLEDIALISDIDSYNESADQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSKYSEADLEEERRLAYVGITRAKKELYISNSVTRMLYGRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRLGGWGSGYGSDTVPGGASGYSGPSGWGRAASGYGSGYGSRSGYLNKEYNAPMSNNRGFGSDYAGRGSASSGHGGCSSGSGSSGFGSGYGRPAAPKAPVKPAGGGVTSSPRPAAASTGPKHYEPGDIVEHKVFGRGKVLKVKPAAGDQIVEISFEKVGVKKTMANFAPLVKITTEE
>NZ_LR699017.1|WP_149795300.1|323004_323784_-|FAD-dependent-thymidylate-synthase
MMTVRLIAHTPEPEKVVAAAAKLCYSDAHITDLLDGLDEEKTARFLTMLSDLGHASPIEHASFTFGIEGVSRTLLAQITRHRIASFSVQSQRYVRLDDFRYVIPPEIEAIPEAKAAFIESMNEDARRYLDLVQKLEDGHTARLMAEGLPEKQARAKASKQANEDARFVLPNACETKMVVTMNARSLQNFFHLRCCSRAQWEIRQLAEEMLRLVYPVAPHIFRTAGPACVSGPCPEGKMCCGRTAEVRAQYAALKGEKAE
>NZ_LR699017.1|WP_158394654.1|322336_323008_-|deoxynucleoside-kinase
MSKGRLLVIEGLDGSGKATQAKLLASHLAESGSKVMEITFPDYESDSSALVKMYLSGQFGDKPDDVNPYAASSFYAVDRYASYKTKWGSFYEAGGIVIADRYTTSNAVHQCSKLPPEQWDDFLRWAFDYEYRLLGLPAPDAVVYLQVDPAVSQKLMTGRYHGDESRKDVHEKDIEYLARSRRAAEYCAEHLGWATVHCTENGAMRTIEDIQAEVRALAEKELG
>NZ_LR699017.1|WP_158394653.1|321494_322310_-|hypothetical-protein
MYRLMQPSDEAAVVALWQKERGDSAEFIKTALEKFAGAENIYVAEENDEIVAAALAVPVTLKGRSGSYLYGLCGQGSLLLAGLVDCLCAQQKLRGAGFTVAVPDGQEQAALLESKGFQRAFALRCLPREVSRNLWSQAEFDSVTARKLCELRERFYPDTVQFPPEQMAVVLTDLYARGATIVSSEKGYGIYFRREDTLYFVELMAEDDRSAEVLMEAAREKEVIVERAVITVGAAQNLFLGEGTRQDYGMIRFDAEPFDVEESYMRLMMES
>NZ_LR699017.1|WP_158394652.1|320336_321470_-|endolytic-transglycosylase-MltG
MAHDAKHRKSRKGGAAKMILIVLLILVLAAGGCLLAIRKEINGSASAGEPVSVSIQQGSGVAAIAQKLKTAGVIKYPHVFRWYAGKQGAAGKLQYGEFDLAPGSSYDDIIEALSAYAKADSVRLTFPEGTTAIAIAKKMEDAGLCSAEDFLKEANTGDFSQYRFWQYVPDDKDAPDRFLKCEGYLFPDTYDFLKDDTVHHYVETFYSHFDKQITDEMYAEMEKQGMTLSEVVTLASFVQEEAGNDQDDNVAQVFRNRLAEGSPYPKLQSNTSSYVQSDADNNYLWNWVAPYYGGWDSIPENILEAYDTYACTGLSAGPISNPGIAAIRAALDPQPDDEAKDAYFFVTDLAGHYYYARTYADHQKNCDEAAKVNKSMK
>NZ_LR699017.1|WP_158394660.1|336029_337799_-|hypothetical-protein
MRLKSALRRGVAAAVIAGIVVSSGIPAYAARWDIANGDITVKAGDAEGKNKVSQGETIDKDDTNTVITGESDKNTVTIDTSKGDVDVTFDGLKIDVSGKKEGDGSGDGPARESNAAVTVKGDHDAAIELDGDNELKSGDYNAGLEKNGHESEGTLTIKDDKGKDGSLTAEGGFGGAGIGGGIESTGSNITIRGGTIEAVGGSNAAGIGDGAGRASDDTDDPNPGDLYICGDAEVTAKAGSQMTDAKAPAIGGSYGEVPTENLSDDEHKVTGGRLTRLNADGTVMEGMGYDYTSTPKPQPDDDEDDDDDDVPPPAQENAPEPLPGGMVVGGFFSSRVTIQRWDSALAIIESTDPMPGSLKAGDAGEVLTPGGVVLIESAAPRSTVTTDISSLREDGVEDIFFRYEDTMTHYSVDKMADAAGEDADVELKQNREDISLRLDGETRDDLSERYLEWVPVQTPEPQEWLILTHELAKKRDDRPSLDWWLEPARTETPRIGLDESLKQLASRFEAIAPEEDKPRLFLLETTVPDGTKYTNLLESDLRSYTDLGDDWDDLPDTQGEIKLWIPEDLGQPKEISISKESLSRSDGIA
>NZ_LR699017.1|WP_158394661.1|337963_338746_-|amino-acid-ABC-transporter-ATP-binding-protein
MALLEASGIGKNFGETKVLKDISLTLEQGEALAIIGSSGSGKTTLLRCLNFLERPDTGVIRVNGETMWDAADPATQRESEVRKKRLHFGLVFQNFNLFPQYTALENVMLAGELLAKEQPDYKANKKAIHAQLEAQARDLLAQMGLSERAGHYPHQLSGGQQQRVAIARALALHPDILCFDEPTSALDPELTGEVLRVLRDLADRKTTMIIVTHEMHFARDVADRILFMDGGVVVEEGPARQLIDHPQEERTKQFLAHYSE
>NZ_LR699017.1|WP_158397221.1|338761_339409_-|amino-acid-ABC-transporter-permease
MILERLTGAFALNCELFFLTLLFSLPLGLVVAFGSMSRCAPLRGVVKTFVWVIRGTPLMLQIIVIYLGPGLLGMTNPWPSGSSGRLVAAVVAFAINYACYFSEIYRGGIEAVPKGQTEAGQVLGMTKSQIFFKVTLLQVVKRILPPMGNEVITLVKDTSLANVIANKEIIMMAKEYSAKGLIWPLFSTAIFFLVFVGALTLLLDWAEKKMDYFRC
>NZ_LR699017.1|WP_158394662.1|339449_340289_-|amino-acid-ABC-transporter-substrate-binding-protein
MKRLVSAFLAGAMALSLAACGGSASTSTAASSAAASAAPASSVAADSDLAYIQSNGKMVIGYTVYEPMNYTDADGNFTGFDTELATAVCEKLGVEPEFVEINWDTKETELAAKSIDCIWNGLTLTDDREENMACTKPYVKNAQVVVVKDGTDYTSTADLIGKTVVAEAGSAGETTITENADLSQADFISKAVQTDCLMEVAAGTADAAILDLTLASAMIGEGTDYANLKMVDELNVEEYGVAFRKGSDVAEAVDNAFDELKADGTMQTLADKYGLTLAE
>NZ_LR699017.1|WP_158394663.1|340528_341569_-|hypothetical-protein
MTQRQKALLSCAVAAALLLSGCRKGNSDSGSMSSSNAMSGSSGSASTTQTGGWKTGLGILTEASDEARTGTIHTIAAAVLLDGDGKLADVMLDELEVEVTADGKGVVTMPTDYRTKRQKGDDYPLAAASSLKKGWAEQADDFADYLTGMTPEQASMLETDKDGKAVDADLLSGCTIRVDKYRDAVAKACTNASALGAAKGDRVSLGVEAENASSDITATDDKDVNAEVDLTVVALTLDADGRVTSAIGDMAEPALTIAADGGVTAPDTVRSKLELGDSYGMRNASSLGKEWYEHSEGYCSYLKGKTEKEVADIPADGSDADLAALCTISIDALQKAAGDAFENASL
>NZ_LR699017.1|WP_158394664.1|341850_343389_-|cardiolipin-synthase
MFFRLPVVRFFNRVINRAAVTVALVLLQIGWLLWAFFSLTAGKVWVNAGLNVLSLFITLYLVRKDENSDYKIIWLVLIGMMPLLGGALYLAFGNKAPAKRMRQRMQAVERQHTADLAQQPGQTDALDPASRGLSRYVSEYGPYPAWKNSTAKYYPCGEAMYPDLLADLEKAERFIFLEFFIVRTGKMWDGVEDILVRKAAQGVDVRLIYDDFGSLLGLPSDFVVKMERAHIRCIPFNPVVPLVSLVMNHRDHRKIVVVDGNTAYTGGINLADEYINEEERFGYWKDAALRTEGAAVWNFTVMFLDHWNAFRPSEEDYAPFMPQAESLSAQSDGVIQPYGDSPLDEEALAETVYLNIINQAQRYVYIYTPYFAVGETMLEALKAAAKRGVDVRLVLPGIPDKKLIFRLTRSYYVPLLRAGVRIYEFTPGFLHAKCYVSDDRAAVVGSINMDYRSLFLHFECGALLLYNSQVIALRDDVLRTLPECREVQLADCRTSLAGTLLDSVLRLLSPLM
>NZ_LR699017.1|WP_158394665.1|343463_344300_-|DegV-family-protein
MKRIVVDSSASLYALDGIDFAAVPLKIVTDEREYLDDGTLDAVEMATTLRTYKGKTSTSCPNIGDWLEAYEGADEIYAITITGTLSGSCNAAQLAAEEYQAEHPGAQVFVLDSLSAGPELVLLAEHIRALIEEGKDFDEVCEEMLRYRHHTHLLFSLESLANLARNGRVKPAVAAVARVLNIRVIGKASDVGELDVLCKTRGEHGALERIVLELKGHGYTNGKVIIAHCGNPAAAERLMHMVRAVFEGAQVRVTECGGLCSYYAELGGLMVGFEDADA
>NZ_LR699017.1|WP_158394666.1|344459_345008_+|DUF1836-domain-containing-protein
MNQEMKRRVTACAAGFSLPRYRELPSVGLYLDQTVQLVNSCFRGFPGVELTPSMVSNYVKKGVISHPVKKKYSREQLASLIYIVLSKNVLSLENIDTLFQMQRAHCTAAEAYDYFCDEVENCLPYIFGAGSTIRGLDPDADDEKRLLRGTIVAAVNKMYLDCCFVAMRQEEALWPGILGDLE
>NZ_LR699017.1|WP_158394667.1|345065_346187_-|peptide-chain-release-factor-2
MITTDELKVQLAEYHTAVKDLEEALAIDASRKRVQELEHTMSRPGFYDDAELSKKVFDEVGDLKGKLTRFEKLQGLYDDAETMLVMLDEEYDPEMVPEAEEAVNAVGKAVDELQLMTMLNGEYDHSNAILTFHAGTGGTEAQDWAEMLYRMYNKWAQAHGMTVEVLDYQDGDEAGMKSASMMVKGANAYGLLKSENGVHRLVRVSPFDANARRQTSFASLEVMPELDNTIQVDIRPEDIEMQVYRSSGAGGQHINKTSSAVRLIHKPTGIVVNCQTQRSQFQNRDYAMEMLKAKLYQIAKQQHMDKIDDIKGVQNEIAWGHQIRSYVFMPYTMVKDHRTNYETGNVDAVMDGDLDGFIFAYLKAASRGELQDT
>NZ_LR699017.1|WP_158394668.1|346620_347583_+|DUF2628-domain-containing-protein
MPKYYGCPCEGCGKPLTLQDDIVVCPDCGAPYHRVCYEKLGQCIHRPAHAAGYEWKFPYEESQLRTCPSCGERTLRDEETCRCCGAVLPPEGQEPPSTRGSGEETFDYSQMYRQFGTSADPEKEFFEDAFGKEAKMDGIDRQDWLDYIGPAAPAYLAAYSRMQLQKSKVSMSFSALLFGPFYFFYRKAWKPAFGFLAAELLLAAPTFIEMLQLSGSALAPAMSASALTVFARVCSVLSFVLMLVRGMYGKWLYRKSAADHIRRIQSEFPDAQQRQAVLRAQGGVSFGAVFLCVLLLSVCGSAFTLLLGPDLQAILNAFYG

Crispr_ID: NZ_LR699017_2

• CRISPR_ID: NZ_LR699017_2
• CRISPR_location: 682179-685446
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 48 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NZ_LR699017_2

Consensus_repeat	Method
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	PILER-CR
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CRISPRCasFinder
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CRT

spacers of NZ_LR699017_2

>2.1|682212|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
AATAATCCAGTGCTCATTTTTTGATCTCCTTCGGT
>2.2|682280|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATTCCATTTTACATTCCTATGCACTTAGGAGACCC
>2.3|682348|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
AAGACAGTTGCAACGCGATTGATGCCGGAAGAAT
>2.4|682415|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CGATCTGGAAAACAATGTGTATGAGACGAACGA
>2.5|682481|36|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CTGCGTCTGCGGCCGGAGCATACCGAAGCTCACGTG
>2.6|682550|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CGCCTCCGGTGCGCTGTTGCCGTCGTACAGCGTCG
>2.7|682618|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TGCTCCGATTTAATGCACCGGACCGCATACCGG
>2.8|682684|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
AGCCGCTCTATCGGGACGTTCCGCAGCCCGGACCG
>2.9|682752|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATAAGCAGCCTGCGGGTCAGGGAACAGACCGGGCG
>2.10|682820|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TCGCTACCAGTGGCACTAGGCATGGCAGTCAGGCT
>2.11|682888|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TCTTGTGTCTCCTTCGATAACGCCCTTGCATCTGT
>2.12|682956|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CTCAGTCGTACGGCTCAGTGAGCAAGAGCTGAG
>2.13|683022|36|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TTTTCCAGGCCGCACTCCACCATCTTGCTGCTGGCC
>2.14|683091|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ACAAATGAAACGGGTAAAAAATTAGTTGGAAATG
>2.15|683158|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
AATCAGGATAACACCCTTGCAGACACGCTTATCC
>2.16|683225|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
GACGAACGCAACGGCAATTTCGAGGAAGCAAAGGA
>2.17|683293|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CTCCTTGTCATGTAGCGCGTGATAAATCGCGTCC
>2.18|683360|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CCGTTCTTCCCGAAAGAAACGGCAGACCAGTTGG
>2.19|683427|36|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATCCACCCGGCGGGCATAGGCCGCGCTGGCAAGAGC
>2.20|683496|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
GTAAGAAGAAGCTCGGTGCAATCAAAATCGGAAAG
>2.21|683564|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CGTCATCAGAGTAGCGGACGGCAAAGTAGCCGCCG
>2.22|683632|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATCCAGCTCAGGCGCTCAGTGTTGATACCTGCAT
>2.23|683699|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ACCTCATAGCCTTTGCCAAGCGTCGCGTCGCAA
>2.24|683765|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
GGGTCAAACTTGAGGCCGTCCCGGTAGCCCTTC
>2.25|683831|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
AGCGGTGCAGGCTCAACCACGGTGGGAGTGCTGG
>2.26|683898|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
AGCGAGCTTTACAGCATCCCGGCATGAACGCCG
>2.27|683964|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CTGCTGGCTCGGCTCAACGCCCAGCGGCATCCCA
>2.28|684031|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TTTGCGTTGTACCGCGCCGGTCCTGCGACGGCG
>2.29|684097|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CCCCCAAGCGTGTGGTAGCTGCGATAGAGGTACT
>2.30|684164|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TGTGCGCTGCGCCGCTCCGGTGCAGGCAGGTCAA
>2.31|684231|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ACCCACGGACGGGAGCTCACATGGCAACCCTCAG
>2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
AGGCTGTTGTAGTCGCTGAATACGCCGCTCCGGC
>2.33|684365|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TACTCTCGTCGTGGATGCAATACCTACAATTTTT
>2.34|684432|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TGCCTCGTCACGGGTCAGATGCGGATGCGGCATC
>2.35|684499|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATGTACCCGTTAGCAAAGGCCACCAGGCCGTTAGT
>2.36|684567|36|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATATTATCATTGATCGTATGAAGAGATCCAGAAATA
>2.37|684636|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ACGACAACAGCATACTTTCGCACACCACGGCGG
>2.38|684702|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TCGTGGTGGCCTTGCCCATATCCAGTGCTGCTTG
>2.39|684769|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TCGCTGGCCAGAGGGCAGCCATGCGCACTGCATC
>2.40|684836|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATCAGACCGAAAGCATCCAACCAGTCGAAGAAGTC
>2.41|684904|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CGACCTCGAAGCTGCAGGCAGTTTACCGCAAGTTT
>2.42|684972|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ACGCTGTATTTACGGTTGGATAGCTGGCTGATTTG
>2.43|685040|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TGACGGCAAGACCCAGCGCGTGGATGACCTCTTT
>2.44|685107|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
ATGAGAAGCTGGGCATCAAGGATAAGTATACCGAT
>2.45|685175|36|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
TTCGATCTTCTCGCGCAGATGGAACGGCTCATAGGC
>2.46|685244|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
CGGCCAGCCTGACCCTCCAGACCCGCCGCAGAAC
>2.47|685311|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT
GGCAAGAAGTTTGGCTTCGCACTGGATGTTCTCAC
>2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT
ACCGCATAACCCCACTGGAAAACGCCATCACGCA

CRISPR arrays and Neighbor proteins around NZ_LR699017_2

CRISPR arrays

The CRISPR arrays of NZ_LR699017_2

>merge|NZ_LR699017|2|682179-685446|PILER-CR,CRISPRCasFinder,CRT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATAATAATCCAGTGCTCATTTTTTGATCTCCTTCGGTGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATATTCCATTTTACATTCCTATGCACTTAGGAGACCCGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATAAGACAGTTGCAACGCGATTGATGCCGGAAGAATGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATCGATCTGGAAAACAATGTGTATGAGACGAACGAGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATCTGCGTCTGCGGCCGGAGCATACCGAAGCTCACGTGGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATCGCCTCCGGTGCGCTGTTGCCGTCGTACAGCGTCGGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATTGCTCCGATTTAATGCACCGGACCGCATACCGGGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATAGCCGCTCTATCGGGACGTTCCGCAGCCCGGACCGGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATATAAGCAGCCTGCGGGTCAGGGAACAGACCGGGCGGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATTCGCTACCAGTGGCACTAGGCATGGCAGTCAGGCTGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATTCTTGTGTCTCCTTCGATAACGCCCTTGCATCTGTGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATCTCAGTCGTACGGCTCAGTGAGCAAGAGCTGAGGTCGCCCTCCTTGCGGAGGGCGTGGATAGAAATTTTTCCAGGCCGCACTCCACCATCTTGCTGCTGGCCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATACAAATGAAACGGGTAAAAAATTAGTTGGAAATGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATAATCAGGATAACACCCTTGCAGACACGCTTATCCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATGACGAACGCAACGGCAATTTCGAGGAAGCAAAGGAGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATCTCCTTGTCATGTAGCGCGTGATAAATCGCGTCCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATCCGTTCTTCCCGAAAGAAACGGCAGACCAGTTGGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATATCCACCCGGCGGGCATAGGCCGCGCTGGCAAGAGCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATGTAAGAAGAAGCTCGGTGCAATCAAAATCGGAAAGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATCGTCATCAGAGTAGCGGACGGCAAAGTAGCCGCCGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATATCCAGCTCAGGCGCTCAGTGTTGATACCTGCATGTCGCCCTCCTCGCAGAGGGCGTGGATAGAAATACCTCATAGCCTTTGCCAAGCGTCGCGTCGCAAGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATGGGTCAAACTTGAGGCCGTCCCGGTAGCCCTTCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATAGCGGTGCAGGCTCAACCACGGTGGGAGTGCTGGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATAGCGAGCTTTACAGCATCCCGGCATGAACGCCGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATCTGCTGGCTCGGCTCAACGCCCAGCGGCATCCCAGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTTTGCGTTGTACCGCGCCGGTCCTGCGACGGCGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATCCCCCAAGCGTGTGGTAGCTGCGATAGAGGTACTGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTGTGCGCTGCGCCGCTCCGGTGCAGGCAGGTCAAGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATACCCACGGACGGGAGCTCACATGGCAACCCTCAGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATAGGCTGTTGTAGTCGCTGAATACGCCGCTCCGGCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTACTCTCGTCGTGGATGCAATACCTACAATTTTTGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTGCCTCGTCACGGGTCAGATGCGGATGCGGCATCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATATGTACCCGTTAGCAAAGGCCACCAGGCCGTTAGTGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATATATTATCATTGATCGTATGAAGAGATCCAGAAATAGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATACGACAACAGCATACTTTCGCACACCACGGCGGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTCGTGGTGGCCTTGCCCATATCCAGTGCTGCTTGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTCGCTGGCCAGAGGGCAGCCATGCGCACTGCATCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATATCAGACCGAAAGCATCCAACCAGTCGAAGAAGTCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATCGACCTCGAAGCTGCAGGCAGTTTACCGCAAGTTTGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATACGCTGTATTTACGGTTGGATAGCTGGCTGATTTGGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTGACGGCAAGACCCAGCGCGTGGATGACCTCTTTGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATATGAGAAGCTGGGCATCAAGGATAAGTATACCGATGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATTTCGATCTTCTCGCGCAGATGGAACGGCTCATAGGCGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATCGGCCAGCCTGACCCTCCAGACCCGCCGCAGAACGTCGCCCTCCTCGCGGAGGGCGTGGATAGAAATGGCAAGAAGTTTGGCTTCGCACTGGATGTTCTCACGTCGCCTTCCTCGCGGAGGGCGTGGATAGAAATACCGCATAACCCCACTGGAAAACGCCATCACGCAGTCGCCCTCCTCGCGGAGGGCGCAAGTAGAAATC

>NZ_LR699017|2|1|682179-685378|PILER-CR
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AATAATCCAGTGCTCATTTTTTGATCTCCTTCGGT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	ATTCCATTTTACATTCCTATGCACTTAGGAGACCC
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AAGACAGTTGCAACGCGATTGATGCCGGAAGAAT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CGATCTGGAAAACAATGTGTATGAGACGAACGA
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CTGCGTCTGCGGCCGGAGCATACCGAAGCTCACGTG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CGCCTCCGGTGCGCTGTTGCCGTCGTACAGCGTCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TGCTCCGATTTAATGCACCGGACCGCATACCGG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AGCCGCTCTATCGGGACGTTCCGCAGCCCGGACCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	ATAAGCAGCCTGCGGGTCAGGGAACAGACCGGGCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TCGCTACCAGTGGCACTAGGCATGGCAGTCAGGCT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TCTTGTGTCTCCTTCGATAACGCCCTTGCATCTGT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CTCAGTCGTACGGCTCAGTGAGCAAGAGCTGAG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TTTTCCAGGCCGCACTCCACCATCTTGCTGCTGGCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACAAATGAAACGGGTAAAAAATTAGTTGGAAATG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AATCAGGATAACACCCTTGCAGACACGCTTATCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GACGAACGCAACGGCAATTTCGAGGAAGCAAAGGA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CTCCTTGTCATGTAGCGCGTGATAAATCGCGTCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CCGTTCTTCCCGAAAGAAACGGCAGACCAGTTGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCCACCCGGCGGGCATAGGCCGCGCTGGCAAGAGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GTAAGAAGAAGCTCGGTGCAATCAAAATCGGAAAG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGTCATCAGAGTAGCGGACGGCAAAGTAGCCGCCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCCAGCTCAGGCGCTCAGTGTTGATACCTGCAT
GTCGCCCTCCTCGCAGAGGGCGTGGATAGAAAT	ACCTCATAGCCTTTGCCAAGCGTCGCGTCGCAA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GGGTCAAACTTGAGGCCGTCCCGGTAGCCCTTC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGCGGTGCAGGCTCAACCACGGTGGGAGTGCTGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGCGAGCTTTACAGCATCCCGGCATGAACGCCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CTGCTGGCTCGGCTCAACGCCCAGCGGCATCCCA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TTTGCGTTGTACCGCGCCGGTCCTGCGACGGCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CCCCCAAGCGTGTGGTAGCTGCGATAGAGGTACT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGTGCGCTGCGCCGCTCCGGTGCAGGCAGGTCAA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACCCACGGACGGGAGCTCACATGGCAACCCTCAG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGGCTGTTGTAGTCGCTGAATACGCCGCTCCGGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TACTCTCGTCGTGGATGCAATACCTACAATTTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGCCTCGTCACGGGTCAGATGCGGATGCGGCATC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATGTACCCGTTAGCAAAGGCCACCAGGCCGTTAGT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATATTATCATTGATCGTATGAAGAGATCCAGAAATA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACGACAACAGCATACTTTCGCACACCACGGCGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TCGTGGTGGCCTTGCCCATATCCAGTGCTGCTTG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TCGCTGGCCAGAGGGCAGCCATGCGCACTGCATC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCAGACCGAAAGCATCCAACCAGTCGAAGAAGTC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGACCTCGAAGCTGCAGGCAGTTTACCGCAAGTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACGCTGTATTTACGGTTGGATAGCTGGCTGATTTG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGACGGCAAGACCCAGCGCGTGGATGACCTCTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATGAGAAGCTGGGCATCAAGGATAAGTATACCGAT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TTCGATCTTCTCGCGCAGATGGAACGGCTCATAGGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGGCCAGCCTGACCCTCCAGACCCGCCGCAGAAC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GGCAAGAAGTTTGGCTTCGCACTGGATGTTCTCAC
GTCGCCTTCCTCGCGGAGGGCGTGGATAGAAAT

>NZ_LR699017|2|2|682179-685446|CRISPRCasFinder
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AATAATCCAGTGCTCATTTTTTGATCTCCTTCGGT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	ATTCCATTTTACATTCCTATGCACTTAGGAGACCC
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AAGACAGTTGCAACGCGATTGATGCCGGAAGAAT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CGATCTGGAAAACAATGTGTATGAGACGAACGA
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CTGCGTCTGCGGCCGGAGCATACCGAAGCTCACGTG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CGCCTCCGGTGCGCTGTTGCCGTCGTACAGCGTCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TGCTCCGATTTAATGCACCGGACCGCATACCGG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AGCCGCTCTATCGGGACGTTCCGCAGCCCGGACCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	ATAAGCAGCCTGCGGGTCAGGGAACAGACCGGGCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TCGCTACCAGTGGCACTAGGCATGGCAGTCAGGCT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TCTTGTGTCTCCTTCGATAACGCCCTTGCATCTGT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CTCAGTCGTACGGCTCAGTGAGCAAGAGCTGAG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TTTTCCAGGCCGCACTCCACCATCTTGCTGCTGGCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACAAATGAAACGGGTAAAAAATTAGTTGGAAATG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AATCAGGATAACACCCTTGCAGACACGCTTATCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GACGAACGCAACGGCAATTTCGAGGAAGCAAAGGA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CTCCTTGTCATGTAGCGCGTGATAAATCGCGTCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CCGTTCTTCCCGAAAGAAACGGCAGACCAGTTGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCCACCCGGCGGGCATAGGCCGCGCTGGCAAGAGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GTAAGAAGAAGCTCGGTGCAATCAAAATCGGAAAG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGTCATCAGAGTAGCGGACGGCAAAGTAGCCGCCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCCAGCTCAGGCGCTCAGTGTTGATACCTGCAT
GTCGCCCTCCTCGCAGAGGGCGTGGATAGAAAT	ACCTCATAGCCTTTGCCAAGCGTCGCGTCGCAA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GGGTCAAACTTGAGGCCGTCCCGGTAGCCCTTC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGCGGTGCAGGCTCAACCACGGTGGGAGTGCTGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGCGAGCTTTACAGCATCCCGGCATGAACGCCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CTGCTGGCTCGGCTCAACGCCCAGCGGCATCCCA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TTTGCGTTGTACCGCGCCGGTCCTGCGACGGCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CCCCCAAGCGTGTGGTAGCTGCGATAGAGGTACT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGTGCGCTGCGCCGCTCCGGTGCAGGCAGGTCAA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACCCACGGACGGGAGCTCACATGGCAACCCTCAG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGGCTGTTGTAGTCGCTGAATACGCCGCTCCGGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TACTCTCGTCGTGGATGCAATACCTACAATTTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGCCTCGTCACGGGTCAGATGCGGATGCGGCATC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATGTACCCGTTAGCAAAGGCCACCAGGCCGTTAGT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATATTATCATTGATCGTATGAAGAGATCCAGAAATA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACGACAACAGCATACTTTCGCACACCACGGCGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TCGTGGTGGCCTTGCCCATATCCAGTGCTGCTTG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TCGCTGGCCAGAGGGCAGCCATGCGCACTGCATC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCAGACCGAAAGCATCCAACCAGTCGAAGAAGTC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGACCTCGAAGCTGCAGGCAGTTTACCGCAAGTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACGCTGTATTTACGGTTGGATAGCTGGCTGATTTG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGACGGCAAGACCCAGCGCGTGGATGACCTCTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATGAGAAGCTGGGCATCAAGGATAAGTATACCGAT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TTCGATCTTCTCGCGCAGATGGAACGGCTCATAGGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGGCCAGCCTGACCCTCCAGACCCGCCGCAGAAC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GGCAAGAAGTTTGGCTTCGCACTGGATGTTCTCAC
GTCGCCTTCCTCGCGGAGGGCGTGGATAGAAAT	ACCGCATAACCCCACTGGAAAACGCCATCACGCA
GTCGCCCTCCTCGCGGAGGGCGCAAGTAGAAATC

>NZ_LR699017|2|1|682179-685445|CRT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AATAATCCAGTGCTCATTTTTTGATCTCCTTCGGT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	ATTCCATTTTACATTCCTATGCACTTAGGAGACCC
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AAGACAGTTGCAACGCGATTGATGCCGGAAGAAT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CGATCTGGAAAACAATGTGTATGAGACGAACGA
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CTGCGTCTGCGGCCGGAGCATACCGAAGCTCACGTG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CGCCTCCGGTGCGCTGTTGCCGTCGTACAGCGTCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TGCTCCGATTTAATGCACCGGACCGCATACCGG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	AGCCGCTCTATCGGGACGTTCCGCAGCCCGGACCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	ATAAGCAGCCTGCGGGTCAGGGAACAGACCGGGCG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TCGCTACCAGTGGCACTAGGCATGGCAGTCAGGCT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TCTTGTGTCTCCTTCGATAACGCCCTTGCATCTGT
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	CTCAGTCGTACGGCTCAGTGAGCAAGAGCTGAG
GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT	TTTTCCAGGCCGCACTCCACCATCTTGCTGCTGGCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACAAATGAAACGGGTAAAAAATTAGTTGGAAATG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AATCAGGATAACACCCTTGCAGACACGCTTATCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GACGAACGCAACGGCAATTTCGAGGAAGCAAAGGA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CTCCTTGTCATGTAGCGCGTGATAAATCGCGTCC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CCGTTCTTCCCGAAAGAAACGGCAGACCAGTTGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCCACCCGGCGGGCATAGGCCGCGCTGGCAAGAGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GTAAGAAGAAGCTCGGTGCAATCAAAATCGGAAAG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGTCATCAGAGTAGCGGACGGCAAAGTAGCCGCCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCCAGCTCAGGCGCTCAGTGTTGATACCTGCAT
GTCGCCCTCCTCGCAGAGGGCGTGGATAGAAAT	ACCTCATAGCCTTTGCCAAGCGTCGCGTCGCAA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GGGTCAAACTTGAGGCCGTCCCGGTAGCCCTTC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGCGGTGCAGGCTCAACCACGGTGGGAGTGCTGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGCGAGCTTTACAGCATCCCGGCATGAACGCCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CTGCTGGCTCGGCTCAACGCCCAGCGGCATCCCA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TTTGCGTTGTACCGCGCCGGTCCTGCGACGGCG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CCCCCAAGCGTGTGGTAGCTGCGATAGAGGTACT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGTGCGCTGCGCCGCTCCGGTGCAGGCAGGTCAA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACCCACGGACGGGAGCTCACATGGCAACCCTCAG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	AGGCTGTTGTAGTCGCTGAATACGCCGCTCCGGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TACTCTCGTCGTGGATGCAATACCTACAATTTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGCCTCGTCACGGGTCAGATGCGGATGCGGCATC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATGTACCCGTTAGCAAAGGCCACCAGGCCGTTAGT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATATTATCATTGATCGTATGAAGAGATCCAGAAATA
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACGACAACAGCATACTTTCGCACACCACGGCGG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TCGTGGTGGCCTTGCCCATATCCAGTGCTGCTTG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TCGCTGGCCAGAGGGCAGCCATGCGCACTGCATC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATCAGACCGAAAGCATCCAACCAGTCGAAGAAGTC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGACCTCGAAGCTGCAGGCAGTTTACCGCAAGTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ACGCTGTATTTACGGTTGGATAGCTGGCTGATTTG
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TGACGGCAAGACCCAGCGCGTGGATGACCTCTTT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	ATGAGAAGCTGGGCATCAAGGATAAGTATACCGAT
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	TTCGATCTTCTCGCGCAGATGGAACGGCTCATAGGC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CGGCCAGCCTGACCCTCCAGACCCGCCGCAGAAC
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	GGCAAGAAGTTTGGCTTCGCACTGGATGTTCTCAC
GTCGCCTTCCTCGCGGAGGGCGTGGATAGAAAT	ACCGCATAACCCCACTGGAAAACGCCATCACGCA
GTCGCCCTCCTCGCGGAGGGCGCAAGTAGAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NZ_LR699017.1|WP_158397250.1|689248_690082_+|ParA-family-protein	unknown	unknown	gnl|CDD|379293
NZ_LR699017.1|WP_158394882.1|685809_686661_+|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl|CDD|211589
NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|350688
NZ_LR699017.1|WP_158394889.1|692065_692530_+|PcfB-family-protein	unknown	unknown	gnl|CDD|378920
NZ_LR699017.1|WP_158394888.1|691603_692041_+|DUF3846-domain-containing-protein	unknown	unknown	gnl|CDD|378999
NZ_LR699017.1|WP_015565148.1|673026_673881_-|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223656
NZ_LR699017.1|WP_158394886.1|690038_690968_+|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl|CDD|319264
NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl|CDD|378245
NZ_LR699017.1|WP_158394883.1|687001_687538_-|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239489
NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_LR699017.1|WP_158394885.1|688379_689249_+|replication-initiator-protein-A	unknown	unknown	gnl|CDD|369151
NZ_LR699017.1|WP_158394873.1|670610_671654_-|[citrate-(pro-3S)-lyase]-ligase	unknown	unknown	gnl|CDD|225595
NZ_LR699017.1|WP_158394890.1|692526_692835_+|conjugal-transfer-protein-TraG	unknown	unknown	unknown
NZ_LR699017.1|WP_158394887.1|691027_691477_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|187768
NZ_LR699017.1|WP_158394874.1|671646_673014_-|triphosphoribosyl-dephospho-CoA-synthase-CitG	unknown	unknown	gnl|CDD|132169
NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl|CDD|187782
NZ_LR699017.1|WP_158394884.1|687675_688254_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378935

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.6e-34	114.1	0.0
NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	6.8e-110	361.4	0.0
NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.7e-53	176.6	0.0
NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	3.7e-28	92.3	0.0
NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	2.5e-146	481.8	0.0
NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	2.1e-143	473.5	0.0
NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	8.8e-70	229.3	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.15649e-153
NZ_LR699017.1|WP_158397250.1|689248_690082_+|ParA-family-protein	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	9.04296e-71
NZ_LR699017.1|WP_158394882.1|685809_686661_+|DNA-3-methyladenine-glycosylase-2-family-protein	gnl|CDD|211589	TIGR00588, Includes:_DNA-apurinic_or_apyrimidinic_site_lyase, 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily. [DNA metabolism, DNA replication, recombination, and repair].	4.51186e-36
NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.26464e-50
NZ_LR699017.1|WP_158394889.1|692065_692530_+|PcfB-family-protein	gnl|CDD|378920	pfam12687, DUF3801, Protein of unknown function (DUF3801). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.	2.26511e-34
NZ_LR699017.1|WP_158394888.1|691603_692041_+|DUF3846-domain-containing-protein	gnl|CDD|378999	pfam12957, DUF3846, Domain of unknown function (DUF3846). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is found associated with an pfam07275 like domain. This suggests that this family may also be involved in evading host restriction.	6.86172e-37
NZ_LR699017.1|WP_015565148.1|673026_673881_-|LysR-family-transcriptional-regulator	gnl|CDD|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.82931e-45
NZ_LR699017.1|WP_158394886.1|690038_690968_+|ParB/RepB/Spo0J-family-partition-protein	gnl|CDD|319264	cd16407, ParB_N_like, ParB N-terminal, parA-binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	4.87642e-50
NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_LR699017.1|WP_158394883.1|687001_687538_-|phosphatase-PAP2-family-protein	gnl|CDD|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.32473e-29
NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.66679e-33
NZ_LR699017.1|WP_158394885.1|688379_689249_+|replication-initiator-protein-A	gnl|CDD|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	1.56908e-28
NZ_LR699017.1|WP_158394873.1|670610_671654_-|[citrate-(pro-3S)-lyase]-ligase	gnl|CDD|225595	COG3053, CitC, Citrate lyase synthetase [Energy production and conversion].	4.60667e-160
NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	8.39891e-32
NZ_LR699017.1|WP_158394874.1|671646_673014_-|triphosphoribosyl-dephospho-CoA-synthase-CitG	gnl|CDD|132169	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG. Triphosphoribosyl-dephospho-CoA is transferred to, and becomes the prosthetic group of, the respective acyl carrier protein subunits of both citrate lyase and malonate decarboxylase. Members of this protein family are triphosphoribosyl-dephospho-CoA synthases specifically from citrate lyase systems. This protein sometimes occurs as a fusion protein with CitX, the phosphoribosyl-dephospho-CoA transferase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Fermentation].	4.11515e-98
NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.46307e-88
NZ_LR699017.1|WP_158394884.1|687675_688254_+|helix-turn-helix-domain-containing-protein	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.57204e-05

Protein sequences

>NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVHTETPAGRKRLRKVAKRCVDHGQRVQNSVFECLLDAAQYAVLKAELTSLIDPALDSLRFYQLGNNYKSKVEHIGVHPPFEQDGLLLF
>NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKFLNTLYVLNKDAYLSLEGENIVLLCNKAEIGRVPLHTLEGIVCFSYPGASPALMGKCASLGVDLSFFSPQGRFLARAVGEERGNVLLRQTQYRIADSEAESCLYARNFILGKVYNARWVLERATRDHPQRVPVEQLKRTSAQLAAALPLIEQCDDLDQLRGLEGEAAQRYFDCFDSLILQQHDDFSFAGRSRRPPLDNTNALLSFAYSLLASDCTAALQSVGLDPYVGFLHRARPGRRSLALDLMEELRAVYADRFVLSCINQKILNPKHFQKQENGAVLLTDEGRRAFLGGWQTRKQETITHPFLNEKLPWGLVPYVQALLLARTLRGDMELYPPFFWK
>NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4
MGGADDWLPLSGIQHFCFCRRQWALIHLEQQWAENRRTVEGQLDHARCHDANQTERRGGLLITRGMQVVSRRLGLSGNCDVVEFRADPEGVSLQSTEGLWKPMPVEYKHGRAKASDADRLQLCAQAMALEEMLVCSIPEGALFYEETRRREVVPLTEELRQTTQKMADEMHAYFARGYTPKSKPGTHCNACSLKELCLPVLYQRADPKAYLRAHLDEMQEAAP
>NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEPIKNRYDFVILFDVENGNPNGDPDAGNMPRIDPETGYGLVTDVCLKRKIRNYVETLKEDEKGYRIYIKDGVPLNRSDAEAISTLGIDPDLKAAKKADPDIDAKLRDYMCENYFDIRTFGAVMTTFVKGALNCGQVRGPVQLSFARSVDPIVPQEVTITRVAITTEADAEKKGTEMGRKHIVPYALYRAEGYVSANLARKTTGFSEDDLKLLWTAILNMFENDHSAARGKMAVRELIVFKHDSELGNAPAYKLFDSVTVQRKPDVDAARSYRDYTVTVADTLPEGVTCERLS
>NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALTAYYEQLLKQGKVEAPGWDSKFKVSYELRLGPDGQLLALNDLRQEVPKGKKTVIAPRELPVPHRVKRASGVAANFLCDNTSYLLGADEKGKPERSRQCFEACAALHHKVLDGVDSPAAKAILAFFDSWEPDTAPTHPLLAEQWADLNNNANLVFGYESPDGAHWLATTDDAIRAAWQSAFDTSDADAETARCLITGKEAGIARIHPAIKGVMGAQAAGAALVSFNAPAFCSYGHEQGANAPVSEYAAFAYTTALNLLLADRNCCQRIGDTTIVCWAENAAPAYSNAMLMFFCGGAEARGVSESDLAAALKALSQGRPVSFLDDKLDPNQNFYVLGISPNAARLSVRFFLRNSFGQFAKNLQDHADRLSITRPAFDKRENLSVWALAQETVNQKSRDKNPSPQLVGDLLRAILTGGPYPATLLNGVTLRIRAEREVTRGRASILKAYYLRNYPTELNKEVFTVSLNESSNVPYVLGRLFSVLETIQSVANPGINATIKDRYFNSACATPATAFPTLVKLAQKHLQKMSTPNEVHFSKQLTELMAQLPETGFPARLSLPEQGAFEIGYYHQTQKRYAKKNEEE
>NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5
MSMLIEVWGDYACFTRPEMKTERVSYDMITPSAARGLVEAIYWHPGLRYTVDRIYLLKPFGLDPEDEASTEEYTQRPIRFTNIRRNEVKSTLLSSAALSAAKGGTPPVLYTSEDIQQRAAMVLQDVHYVIECHFDLTDKAAPSDNPGKFQDILRRRLRKGQCYHQPCFGCREFPANFREWPGGSIPALKVTQDLGFMLHSLDYSDSANIRSQFFRAKLVDGVMECRDVEVFT
>NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'
MEHSTRLAHISEDGTRTQTVYDHLAGTARLVGSFAAPFGAQSEAEFAAWLHDVGKYSDAFQLRLKGGPKVDHSTAGAQEAWVRQHLHTAFAVAGHHSGLPDGGSPADDPGDATLFGRSKKPVAPYDGWQEVTLPASTPPAWACADPLSLAFFTRMLYSCLVDADFIDTETFMDGKAAPRGSGTDIAALRDIVSAQAQRYLRAESPSPVSVQRNTVLRACLEKGAHGPQGLYTLTVPTGGGKTFASLAFALEHAAAQKMKRVIYVIPYMSIIDQTAAVFSGLLGAENVLADFSNAEYKTVEQDDLTPAQYRQMLASENWDAPVVVTTAVQFFESLYANRSSRCRKLHNIADSVIIFDEAQTLPGDYLAPCVSAIAQLIQHYHSTAVLCTATQPALEPLFRRFAPELHPQEITPDAARLYEVLRRTTLQDLGTLPQEEFAARLANHPQVLCVVNRRKTAQRLYAALPAEGSYCLTTLLCAADRRRQLDDIRQRLKEGLPCRVVSTSLIEAGVDVDFPVAYREQCGLDSLLQTAGRCNREGRRGAEESIVYRFRLDECSTPQMLRQNVSALDYTARHQDTLDTPRAIQLYFNELSDLRGPDAVDKHGILDAFLRGIRGCQFPFAQVAEEFRLIENAARTVYLPVGEGAALCEQLRSGHVTRTLLRKLGIYSVSCYKDQFDKLDAAGALELRPDGSAILTDTSCYSEKTGLAMDVETGIGLYF
>NZ_LR699017.1|WP_015565148.1|673026_673881_-|LysR-family-transcriptional-regulator
MDEKDYELLHALDETRNITHAADKLYMTQSALSKRIKALEQELGVEIVLRSRQGIRFTPAGEQVLLHSAAAAREMEKMRRQLASIQGEACGTLRAGISVNFSYYRLPEVLTEYHKAYPKVRLDIATGHSRNIYQQMLDSSLDVAVLRGEYPWDGTQFLLSQENICLICSEENKDRPISDYLYIDHSSDATISAQMARWRYENGVTNDAGNFVVDNIMVCREMVERGLGWALMPEVALDNFKGYVKPCTFENGEPFVRRTYIFCQRDAAALPQVQLFMDMLKKHR
>NZ_LR699017.1|WP_158394874.1|671646_673014_-|triphosphoribosyl-dephospho-CoA-synthase-CitG
METTVSLVQMLDARERRVQHQQELLAQYHKPLICFTMNICGPIKDSPLIRRGFARGRQLLRQQFLRAKLTPLYQDAVREVTGCEAFYVLDADPLTIKKFTTDIEDATPLGRLFDMDVIRPDGLKVDREELNLEGRRCLICGGPAKVCSSRRIHTVAELQEKTTEILTEARDAQDIADAARLAVRALLYEVTTTPKPGLVDRRNSGSHKDMDVFTFMDSAAALYPYFEDCARTGRETAEQPAPETFAALRPLGCEAEGEMLDATGGVNTHKGAVFSVGIVCAALGRLDRSLWAEAARVLAEVSAMTAGLTEKDFAGVTAENAATAGQKLYIQYGITGVRGQVEAGLPTVLNVGLPVLEEGLAKGYDFDRVGGGALLAILANSTDTNIIARSSRERQLALTEELKALLAQTPYPDKDALAALDDRFIAENLSPGGSADLLALTWLLHFATTEGNINE
>NZ_LR699017.1|WP_158394873.1|670610_671654_-|[citrate-(pro-3S)-lyase]-ligase
MSEYTISQVYPTDKTVLAQIDTLLGQEGIRRDGNLDYICAMFDEEYNVIGTGSCFGNTLRCFAVSSAHQGEGLLNQIITHLIEVQCARGNMHLFLYTKVKSSKFFGDLGFYEIARVEDTLVFMENRRDGFGAYLRDLEKTRTEGKSAALVMNANPFTLGHQYLVEKAAAACDTLHLFVVSEDASLVPFAVRRKLVEAGVAHLPNVVLHDSGPYIISNATFPSYFLKDEAAVIDGHARLDLAVFTKIAAALNITARYVGEEPTSQVTGLYNQIMCEQLPKAGIECVVVPRKEANGKAISASTVRQCLQSGDWDTLETLLPKTSLDYFRSPEAEPVLARIRNAGNVVHY
>NZ_LR699017.1|WP_158394882.1|685809_686661_+|DNA-3-methyladenine-glycosylase-2-family-protein
MHTVPLTHQLVTIQDDFDLDKIIESGQCFRPQKLADGRYRFLSGGALLYLTPLGAGQYDAAWYGSDWECWANYFDLGRNYAALRCSLAGQSSYLDKSLEFGQGIRILHQDPWEMLITFLISQRKSIPAIRTAVERLARCCGEPLSAEGDEVFLFPTPQQLCGLSGAQLMGCGLGYRTRYIQNAAAQASSGTLDLGALAALPNDALFSRLLELDGVGKKVANCVCLFGYGRTAMAPIDVWIQRLIDEEFGGRDPFPSYGQQAGIVQQYLFYYKRSTRHSVAHKK
>NZ_LR699017.1|WP_158394883.1|687001_687538_-|phosphatase-PAP2-family-protein
MNAELTFLQFLQSLHSPMLDGSMGFITRLGDFGILWVTLTALLLVFRKTRRVGCVLAAALLIDAVLCNLLLKPLVARVRPCDILTEVQLLIPHPDDFSFPSGHTAASFASVTALWLAGKKQWAMAALPVGVLIAFSRMYLCVHYPTDILGGVILGAACGWAGAWLVKKAERRMAIPRS
>NZ_LR699017.1|WP_158394884.1|687675_688254_+|helix-turn-helix-domain-containing-protein
MDKGKIKKKSSPKFSSQTAFTMPVVGVEPTRVISTRDFEFLSSSSIWCHPVISSDIWFPLCKGRIHASTSNNLEYPRFFDAFSPYSVFSVWTAQMEIGGMFRRDAGQNAPLLRHKTKGKSRIMNQNQAKEYYKKLFVNYPDVLSVEEATTLLGFKSQTAIIRRIHQHRIRCLKVGRSFMIPKEYLIDYLLDS
>NZ_LR699017.1|WP_158394885.1|688379_689249_+|replication-initiator-protein-A
MTLDYFYGQAGELFSFYRIPKALFQEPRFQSLSTDAKTLYGILLDRMSLSMKNGWLDEQNRVFIIFTIEDVKRALCCADNKVTKLLRELEKFGLIERKRRGLGKPSLVYVKNFSAESSKSIFQNRDFHDSGGFKNASQDPSKSRCNKTKENDTEMSETDPFYSEEADGMSKRTQLEEYFSQSLEIDLLLRLCPDDEDTIYQIVDLLVDTCATNRKLLRIAGDDKPAEVVRSRFMKLNADHIRFVLKCLAENSSPIRNMKQYLLASLYNAPTIMQLSYQNQTNHDLAMRR
>NZ_LR699017.1|WP_158397250.1|689248_690082_+|ParA-family-protein
MKISKKATTVAIVNQKGGTGKTTTCENLGIGLAMEGKKVLLVDADPQGSLTISMGWQQPDELPTTLSTLMQKAINDQSIPPSEGVLHHAEGVDLIPANIELAGLEVSLVNCMNREKMLKQVLEGAKHEYDFILLDCTPSLGMLTVNALAAADTTLIPVQAQYLPVKGLEQLLQTVQKVRRQINTHLKIEGILLTMTDSLTTYDKQISNLIRQAYGGKIKVFEPTIPRSVRAAEISTTGESIFQYDPKGKVAEAYQSLTKEVLADAEKQLKRVAERGR
>NZ_LR699017.1|WP_158394886.1|690038_690968_+|ParB/RepB/Spo0J-family-partition-protein
MPKNSLNVSLKGADDIFSTEESRQEQQREQVQQIPIGELFPFKNHPFKVLDDEAMTRTVESIAQYGVLAPLIARPRPDGDGYEIISGHRRQYAAKLAGLDTLPVIVRQMSDDAAVILMVDSNLQREHILPSERALAYKMKLEAIKNQGARSDLTSAQVGRKLEAADIVGQEAGDSRNQVRRFIRLTNLIPELLDMVDEKKISFNPAVELSYLDESQQRDFLEAMDGTQNAPSVSQAQQLKKMAQCGEFTYEKAFDILGQEKKSEQDTVTIKNDILRKYFPRSYTPRQMEEKIIQLLDAWQKKQQRHNER
>NZ_LR699017.1|WP_158394887.1|691027_691477_+|hypothetical-protein
MNNTIPFHSAPHAPQITVDVNILSMLKQAASCLTEMASENVYLAAIGPDMELTIIVEEDAPSILPCFDDDDALISVKGAPLFISYNPAQVLKLAGKRYLTGPVIFYRTDGHSTIVSLTVEDIYRFQTYLESHSTTLMADGQKLTCICID
>NZ_LR699017.1|WP_158394888.1|691603_692041_+|DUF3846-domain-containing-protein
MRMAENTLSVLKIAPGQYPQQVEIDNNLKALQEAVGGTIAAVYPFADPVAIICNDDGKLMGLPLNRALRDENGQMYDAVAGDFLVVGLGEEDFASLTPELAQKYEQLFHQPEAFLKLGNRLLVLPVPDEPPAEKPRTKPPAEHDR
>NZ_LR699017.1|WP_158394889.1|692065_692530_+|PcfB-family-protein
MAVQEEIEQKLFNIMISTTKLSARTVLRAVKAAFRLYHSKASQGKQSVRTLLRQNRGVSSVEISKTGIRGLERYAKKYGIDYAIRKDTSEVPPRYLVFFKAPDAEAFNSAFKEYSASLLNKDKRPSVLARLQELVQAAAELPGKVRHKEQERGL
>NZ_LR699017.1|WP_158394890.1|692526_692835_+|conjugal-transfer-protein-TraG
MTTIKLTKLLALYLPYILLGLVATNLGEAWRLAEGKELGDKIMSMMGTVPLAFANPLPSLHPLDLLVGLCCGAGLRLAVYFRGKNAKKYRHGMEYGSARWSA

Crispr_ID: NZ_LR699017_3

• CRISPR_ID: NZ_LR699017_3
• CRISPR_location: 685657-685755
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NZ_LR699017_3

Consensus_repeat	Method
GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT	CRISPRCasFinder

spacers of NZ_LR699017_3

>3.1|685690|33|NZ_LR699017|CRISPRCasFinder
TGTCACAACCACGCCGGTCTTTTCAGCATCAAG

CRISPR arrays and Neighbor proteins around NZ_LR699017_3

CRISPR arrays

The CRISPR arrays of NZ_LR699017_3

>merge|NZ_LR699017|3|685657-685755|CRISPRCasFinder
GACGTCCTCTTCACCGAGGGCGTAGATAGAAATTGTCACAACCACGCCGGTCTTTTCAGCATCAAGGTTGCCCTCCCCGCAAAGGGTACGGATAGAAAT

>NZ_LR699017|3|3|685657-685755|CRISPRCasFinder
GACGTCCTCTTCACCGAGGGCGTAGATAGAAAT	TGTCACAACCACGCCGGTCTTTTCAGCATCAAG
GTTGCCCTCCCCGCAAAGGGTACGGATAGAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NZ_LR699017.1|WP_158397250.1|689248_690082_+|ParA-family-protein	unknown	unknown	gnl|CDD|379293
NZ_LR699017.1|WP_158394882.1|685809_686661_+|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl|CDD|211589
NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|350688
NZ_LR699017.1|WP_158394889.1|692065_692530_+|PcfB-family-protein	unknown	unknown	gnl|CDD|378920
NZ_LR699017.1|WP_158394888.1|691603_692041_+|DUF3846-domain-containing-protein	unknown	unknown	gnl|CDD|378999
NZ_LR699017.1|WP_015565148.1|673026_673881_-|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223656
NZ_LR699017.1|WP_158394886.1|690038_690968_+|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl|CDD|319264
NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl|CDD|378245
NZ_LR699017.1|WP_158394883.1|687001_687538_-|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239489
NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_LR699017.1|WP_158394885.1|688379_689249_+|replication-initiator-protein-A	unknown	unknown	gnl|CDD|369151
NZ_LR699017.1|WP_158394873.1|670610_671654_-|[citrate-(pro-3S)-lyase]-ligase	unknown	unknown	gnl|CDD|225595
NZ_LR699017.1|WP_158394890.1|692526_692835_+|conjugal-transfer-protein-TraG	unknown	unknown	unknown
NZ_LR699017.1|WP_158394887.1|691027_691477_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|187768
NZ_LR699017.1|WP_158394874.1|671646_673014_-|triphosphoribosyl-dephospho-CoA-synthase-CitG	unknown	unknown	gnl|CDD|132169
NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl|CDD|187782
NZ_LR699017.1|WP_158394884.1|687675_688254_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378935

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.6e-34	114.1	0.0
NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	6.8e-110	361.4	0.0
NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.7e-53	176.6	0.0
NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	3.7e-28	92.3	0.0
NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	2.5e-146	481.8	0.0
NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	2.1e-143	473.5	0.0
NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	8.8e-70	229.3	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.15649e-153
NZ_LR699017.1|WP_158397250.1|689248_690082_+|ParA-family-protein	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	9.04296e-71
NZ_LR699017.1|WP_158394882.1|685809_686661_+|DNA-3-methyladenine-glycosylase-2-family-protein	gnl|CDD|211589	TIGR00588, Includes:_DNA-apurinic_or_apyrimidinic_site_lyase, 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily. [DNA metabolism, DNA replication, recombination, and repair].	4.51186e-36
NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.26464e-50
NZ_LR699017.1|WP_158394889.1|692065_692530_+|PcfB-family-protein	gnl|CDD|378920	pfam12687, DUF3801, Protein of unknown function (DUF3801). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.	2.26511e-34
NZ_LR699017.1|WP_158394888.1|691603_692041_+|DUF3846-domain-containing-protein	gnl|CDD|378999	pfam12957, DUF3846, Domain of unknown function (DUF3846). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is found associated with an pfam07275 like domain. This suggests that this family may also be involved in evading host restriction.	6.86172e-37
NZ_LR699017.1|WP_015565148.1|673026_673881_-|LysR-family-transcriptional-regulator	gnl|CDD|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.82931e-45
NZ_LR699017.1|WP_158394886.1|690038_690968_+|ParB/RepB/Spo0J-family-partition-protein	gnl|CDD|319264	cd16407, ParB_N_like, ParB N-terminal, parA-binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	4.87642e-50
NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_LR699017.1|WP_158394883.1|687001_687538_-|phosphatase-PAP2-family-protein	gnl|CDD|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.32473e-29
NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.66679e-33
NZ_LR699017.1|WP_158394885.1|688379_689249_+|replication-initiator-protein-A	gnl|CDD|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	1.56908e-28
NZ_LR699017.1|WP_158394873.1|670610_671654_-|[citrate-(pro-3S)-lyase]-ligase	gnl|CDD|225595	COG3053, CitC, Citrate lyase synthetase [Energy production and conversion].	4.60667e-160
NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	8.39891e-32
NZ_LR699017.1|WP_158394874.1|671646_673014_-|triphosphoribosyl-dephospho-CoA-synthase-CitG	gnl|CDD|132169	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG. Triphosphoribosyl-dephospho-CoA is transferred to, and becomes the prosthetic group of, the respective acyl carrier protein subunits of both citrate lyase and malonate decarboxylase. Members of this protein family are triphosphoribosyl-dephospho-CoA synthases specifically from citrate lyase systems. This protein sometimes occurs as a fusion protein with CitX, the phosphoribosyl-dephospho-CoA transferase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Fermentation].	4.11515e-98
NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.46307e-88
NZ_LR699017.1|WP_158394884.1|687675_688254_+|helix-turn-helix-domain-containing-protein	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.57204e-05

Protein sequences

>NZ_LR699017.1|WP_158394881.1|681704_681995_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVHTETPAGRKRLRKVAKRCVDHGQRVQNSVFECLLDAAQYAVLKAELTSLIDPALDSLRFYQLGNNYKSKVEHIGVHPPFEQDGLLLF
>NZ_LR699017.1|WP_158394880.1|680663_681695_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKFLNTLYVLNKDAYLSLEGENIVLLCNKAEIGRVPLHTLEGIVCFSYPGASPALMGKCASLGVDLSFFSPQGRFLARAVGEERGNVLLRQTQYRIADSEAESCLYARNFILGKVYNARWVLERATRDHPQRVPVEQLKRTSAQLAAALPLIEQCDDLDQLRGLEGEAAQRYFDCFDSLILQQHDDFSFAGRSRRPPLDNTNALLSFAYSLLASDCTAALQSVGLDPYVGFLHRARPGRRSLALDLMEELRAVYADRFVLSCINQKILNPKHFQKQENGAVLLTDEGRRAFLGGWQTRKQETITHPFLNEKLPWGLVPYVQALLLARTLRGDMELYPPFFWK
>NZ_LR699017.1|WP_158394879.1|679995_680667_+|CRISPR-associated-protein-Cas4
MGGADDWLPLSGIQHFCFCRRQWALIHLEQQWAENRRTVEGQLDHARCHDANQTERRGGLLITRGMQVVSRRLGLSGNCDVVEFRADPEGVSLQSTEGLWKPMPVEYKHGRAKASDADRLQLCAQAMALEEMLVCSIPEGALFYEETRRREVVPLTEELRQTTQKMADEMHAYFARGYTPKSKPGTHCNACSLKELCLPVLYQRADPKAYLRAHLDEMQEAAP
>NZ_LR699017.1|WP_158394878.1|679111_679996_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEPIKNRYDFVILFDVENGNPNGDPDAGNMPRIDPETGYGLVTDVCLKRKIRNYVETLKEDEKGYRIYIKDGVPLNRSDAEAISTLGIDPDLKAAKKADPDIDAKLRDYMCENYFDIRTFGAVMTTFVKGALNCGQVRGPVQLSFARSVDPIVPQEVTITRVAITTEADAEKKGTEMGRKHIVPYALYRAEGYVSANLARKTTGFSEDDLKLLWTAILNMFENDHSAARGKMAVRELIVFKHDSELGNAPAYKLFDSVTVQRKPDVDAARSYRDYTVTVADTLPEGVTCERLS
>NZ_LR699017.1|WP_158394877.1|677344_679108_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALTAYYEQLLKQGKVEAPGWDSKFKVSYELRLGPDGQLLALNDLRQEVPKGKKTVIAPRELPVPHRVKRASGVAANFLCDNTSYLLGADEKGKPERSRQCFEACAALHHKVLDGVDSPAAKAILAFFDSWEPDTAPTHPLLAEQWADLNNNANLVFGYESPDGAHWLATTDDAIRAAWQSAFDTSDADAETARCLITGKEAGIARIHPAIKGVMGAQAAGAALVSFNAPAFCSYGHEQGANAPVSEYAAFAYTTALNLLLADRNCCQRIGDTTIVCWAENAAPAYSNAMLMFFCGGAEARGVSESDLAAALKALSQGRPVSFLDDKLDPNQNFYVLGISPNAARLSVRFFLRNSFGQFAKNLQDHADRLSITRPAFDKRENLSVWALAQETVNQKSRDKNPSPQLVGDLLRAILTGGPYPATLLNGVTLRIRAEREVTRGRASILKAYYLRNYPTELNKEVFTVSLNESSNVPYVLGRLFSVLETIQSVANPGINATIKDRYFNSACATPATAFPTLVKLAQKHLQKMSTPNEVHFSKQLTELMAQLPETGFPARLSLPEQGAFEIGYYHQTQKRYAKKNEEE
>NZ_LR699017.1|WP_158394876.1|676649_677348_+|type-I-C-CRISPR-associated-protein-Cas5
MSMLIEVWGDYACFTRPEMKTERVSYDMITPSAARGLVEAIYWHPGLRYTVDRIYLLKPFGLDPEDEASTEEYTQRPIRFTNIRRNEVKSTLLSSAALSAAKGGTPPVLYTSEDIQQRAAMVLQDVHYVIECHFDLTDKAAPSDNPGKFQDILRRRLRKGQCYHQPCFGCREFPANFREWPGGSIPALKVTQDLGFMLHSLDYSDSANIRSQFFRAKLVDGVMECRDVEVFT
>NZ_LR699017.1|WP_158394875.1|674412_676572_+|CRISPR-associated-helicase-Cas3'
MEHSTRLAHISEDGTRTQTVYDHLAGTARLVGSFAAPFGAQSEAEFAAWLHDVGKYSDAFQLRLKGGPKVDHSTAGAQEAWVRQHLHTAFAVAGHHSGLPDGGSPADDPGDATLFGRSKKPVAPYDGWQEVTLPASTPPAWACADPLSLAFFTRMLYSCLVDADFIDTETFMDGKAAPRGSGTDIAALRDIVSAQAQRYLRAESPSPVSVQRNTVLRACLEKGAHGPQGLYTLTVPTGGGKTFASLAFALEHAAAQKMKRVIYVIPYMSIIDQTAAVFSGLLGAENVLADFSNAEYKTVEQDDLTPAQYRQMLASENWDAPVVVTTAVQFFESLYANRSSRCRKLHNIADSVIIFDEAQTLPGDYLAPCVSAIAQLIQHYHSTAVLCTATQPALEPLFRRFAPELHPQEITPDAARLYEVLRRTTLQDLGTLPQEEFAARLANHPQVLCVVNRRKTAQRLYAALPAEGSYCLTTLLCAADRRRQLDDIRQRLKEGLPCRVVSTSLIEAGVDVDFPVAYREQCGLDSLLQTAGRCNREGRRGAEESIVYRFRLDECSTPQMLRQNVSALDYTARHQDTLDTPRAIQLYFNELSDLRGPDAVDKHGILDAFLRGIRGCQFPFAQVAEEFRLIENAARTVYLPVGEGAALCEQLRSGHVTRTLLRKLGIYSVSCYKDQFDKLDAAGALELRPDGSAILTDTSCYSEKTGLAMDVETGIGLYF
>NZ_LR699017.1|WP_015565148.1|673026_673881_-|LysR-family-transcriptional-regulator
MDEKDYELLHALDETRNITHAADKLYMTQSALSKRIKALEQELGVEIVLRSRQGIRFTPAGEQVLLHSAAAAREMEKMRRQLASIQGEACGTLRAGISVNFSYYRLPEVLTEYHKAYPKVRLDIATGHSRNIYQQMLDSSLDVAVLRGEYPWDGTQFLLSQENICLICSEENKDRPISDYLYIDHSSDATISAQMARWRYENGVTNDAGNFVVDNIMVCREMVERGLGWALMPEVALDNFKGYVKPCTFENGEPFVRRTYIFCQRDAAALPQVQLFMDMLKKHR
>NZ_LR699017.1|WP_158394874.1|671646_673014_-|triphosphoribosyl-dephospho-CoA-synthase-CitG
METTVSLVQMLDARERRVQHQQELLAQYHKPLICFTMNICGPIKDSPLIRRGFARGRQLLRQQFLRAKLTPLYQDAVREVTGCEAFYVLDADPLTIKKFTTDIEDATPLGRLFDMDVIRPDGLKVDREELNLEGRRCLICGGPAKVCSSRRIHTVAELQEKTTEILTEARDAQDIADAARLAVRALLYEVTTTPKPGLVDRRNSGSHKDMDVFTFMDSAAALYPYFEDCARTGRETAEQPAPETFAALRPLGCEAEGEMLDATGGVNTHKGAVFSVGIVCAALGRLDRSLWAEAARVLAEVSAMTAGLTEKDFAGVTAENAATAGQKLYIQYGITGVRGQVEAGLPTVLNVGLPVLEEGLAKGYDFDRVGGGALLAILANSTDTNIIARSSRERQLALTEELKALLAQTPYPDKDALAALDDRFIAENLSPGGSADLLALTWLLHFATTEGNINE
>NZ_LR699017.1|WP_158394873.1|670610_671654_-|[citrate-(pro-3S)-lyase]-ligase
MSEYTISQVYPTDKTVLAQIDTLLGQEGIRRDGNLDYICAMFDEEYNVIGTGSCFGNTLRCFAVSSAHQGEGLLNQIITHLIEVQCARGNMHLFLYTKVKSSKFFGDLGFYEIARVEDTLVFMENRRDGFGAYLRDLEKTRTEGKSAALVMNANPFTLGHQYLVEKAAAACDTLHLFVVSEDASLVPFAVRRKLVEAGVAHLPNVVLHDSGPYIISNATFPSYFLKDEAAVIDGHARLDLAVFTKIAAALNITARYVGEEPTSQVTGLYNQIMCEQLPKAGIECVVVPRKEANGKAISASTVRQCLQSGDWDTLETLLPKTSLDYFRSPEAEPVLARIRNAGNVVHY
>NZ_LR699017.1|WP_158394882.1|685809_686661_+|DNA-3-methyladenine-glycosylase-2-family-protein
MHTVPLTHQLVTIQDDFDLDKIIESGQCFRPQKLADGRYRFLSGGALLYLTPLGAGQYDAAWYGSDWECWANYFDLGRNYAALRCSLAGQSSYLDKSLEFGQGIRILHQDPWEMLITFLISQRKSIPAIRTAVERLARCCGEPLSAEGDEVFLFPTPQQLCGLSGAQLMGCGLGYRTRYIQNAAAQASSGTLDLGALAALPNDALFSRLLELDGVGKKVANCVCLFGYGRTAMAPIDVWIQRLIDEEFGGRDPFPSYGQQAGIVQQYLFYYKRSTRHSVAHKK
>NZ_LR699017.1|WP_158394883.1|687001_687538_-|phosphatase-PAP2-family-protein
MNAELTFLQFLQSLHSPMLDGSMGFITRLGDFGILWVTLTALLLVFRKTRRVGCVLAAALLIDAVLCNLLLKPLVARVRPCDILTEVQLLIPHPDDFSFPSGHTAASFASVTALWLAGKKQWAMAALPVGVLIAFSRMYLCVHYPTDILGGVILGAACGWAGAWLVKKAERRMAIPRS
>NZ_LR699017.1|WP_158394884.1|687675_688254_+|helix-turn-helix-domain-containing-protein
MDKGKIKKKSSPKFSSQTAFTMPVVGVEPTRVISTRDFEFLSSSSIWCHPVISSDIWFPLCKGRIHASTSNNLEYPRFFDAFSPYSVFSVWTAQMEIGGMFRRDAGQNAPLLRHKTKGKSRIMNQNQAKEYYKKLFVNYPDVLSVEEATTLLGFKSQTAIIRRIHQHRIRCLKVGRSFMIPKEYLIDYLLDS
>NZ_LR699017.1|WP_158394885.1|688379_689249_+|replication-initiator-protein-A
MTLDYFYGQAGELFSFYRIPKALFQEPRFQSLSTDAKTLYGILLDRMSLSMKNGWLDEQNRVFIIFTIEDVKRALCCADNKVTKLLRELEKFGLIERKRRGLGKPSLVYVKNFSAESSKSIFQNRDFHDSGGFKNASQDPSKSRCNKTKENDTEMSETDPFYSEEADGMSKRTQLEEYFSQSLEIDLLLRLCPDDEDTIYQIVDLLVDTCATNRKLLRIAGDDKPAEVVRSRFMKLNADHIRFVLKCLAENSSPIRNMKQYLLASLYNAPTIMQLSYQNQTNHDLAMRR
>NZ_LR699017.1|WP_158397250.1|689248_690082_+|ParA-family-protein
MKISKKATTVAIVNQKGGTGKTTTCENLGIGLAMEGKKVLLVDADPQGSLTISMGWQQPDELPTTLSTLMQKAINDQSIPPSEGVLHHAEGVDLIPANIELAGLEVSLVNCMNREKMLKQVLEGAKHEYDFILLDCTPSLGMLTVNALAAADTTLIPVQAQYLPVKGLEQLLQTVQKVRRQINTHLKIEGILLTMTDSLTTYDKQISNLIRQAYGGKIKVFEPTIPRSVRAAEISTTGESIFQYDPKGKVAEAYQSLTKEVLADAEKQLKRVAERGR
>NZ_LR699017.1|WP_158394886.1|690038_690968_+|ParB/RepB/Spo0J-family-partition-protein
MPKNSLNVSLKGADDIFSTEESRQEQQREQVQQIPIGELFPFKNHPFKVLDDEAMTRTVESIAQYGVLAPLIARPRPDGDGYEIISGHRRQYAAKLAGLDTLPVIVRQMSDDAAVILMVDSNLQREHILPSERALAYKMKLEAIKNQGARSDLTSAQVGRKLEAADIVGQEAGDSRNQVRRFIRLTNLIPELLDMVDEKKISFNPAVELSYLDESQQRDFLEAMDGTQNAPSVSQAQQLKKMAQCGEFTYEKAFDILGQEKKSEQDTVTIKNDILRKYFPRSYTPRQMEEKIIQLLDAWQKKQQRHNER
>NZ_LR699017.1|WP_158394887.1|691027_691477_+|hypothetical-protein
MNNTIPFHSAPHAPQITVDVNILSMLKQAASCLTEMASENVYLAAIGPDMELTIIVEEDAPSILPCFDDDDALISVKGAPLFISYNPAQVLKLAGKRYLTGPVIFYRTDGHSTIVSLTVEDIYRFQTYLESHSTTLMADGQKLTCICID
>NZ_LR699017.1|WP_158394888.1|691603_692041_+|DUF3846-domain-containing-protein
MRMAENTLSVLKIAPGQYPQQVEIDNNLKALQEAVGGTIAAVYPFADPVAIICNDDGKLMGLPLNRALRDENGQMYDAVAGDFLVVGLGEEDFASLTPELAQKYEQLFHQPEAFLKLGNRLLVLPVPDEPPAEKPRTKPPAEHDR
>NZ_LR699017.1|WP_158394889.1|692065_692530_+|PcfB-family-protein
MAVQEEIEQKLFNIMISTTKLSARTVLRAVKAAFRLYHSKASQGKQSVRTLLRQNRGVSSVEISKTGIRGLERYAKKYGIDYAIRKDTSEVPPRYLVFFKAPDAEAFNSAFKEYSASLLNKDKRPSVLARLQELVQAAAELPGKVRHKEQERGL
>NZ_LR699017.1|WP_158394890.1|692526_692835_+|conjugal-transfer-protein-TraG
MTTIKLTKLLALYLPYILLGLVATNLGEAWRLAEGKELGDKIMSMMGTVPLAFANPLPSLHPLDLLVGLCCGAGLRLAVYFRGKNAKKYRHGMEYGSARWSA

Crispr_ID: NZ_LR699017_4

• CRISPR_ID: NZ_LR699017_4
• CRISPR_location: 1068191-1068416
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

Consensus repeat of NZ_LR699017_4

Consensus_repeat	Method
ATTGCAATTTATCCCCGCAAGGGGAC	CRISPRCasFinder

spacers of NZ_LR699017_4

>4.1|1068217|41|NZ_LR699017|CRISPRCasFinder
GGAAACGATCCTTAATTTGACCAGTACCCCATTTTTTAGCG
>4.2|1068284|40|NZ_LR699017|CRISPRCasFinder
GGAAACGCCTTAGTGCGGTAAAGAGTCTCCTCACAGTGGT
>4.3|1068350|41|NZ_LR699017|CRISPRCasFinder
GGAAACCGCGGGAGTGAAATCTCCATTTCAGAACCATGCAA

CRISPR arrays and Neighbor proteins around NZ_LR699017_4

CRISPR arrays

The CRISPR arrays of NZ_LR699017_4

>merge|NZ_LR699017|4|1068191-1068416|CRISPRCasFinder
AGTAAAACTACACCCCGCAAGGGGACGGAAACGATCCTTAATTTGACCAGTACCCCATTTTTTAGCGATTGCAATTTATCCCCACAAGGGGACGGAAACGCCTTAGTGCGGTAAAGAGTCTCCTCACAGTGGTATTGCAATTTATCCCCGCAAGGGGACGGAAACCGCGGGAGTGAAATCTCCATTTCAGAACCATGCAAATTGCAATTTATCCCCGCAAGGGGAC

>NZ_LR699017|4|4|1068191-1068416|CRISPRCasFinder
AGTAAAACTACACCCCGCAAGGGGAC	GGAAACGATCCTTAATTTGACCAGTACCCCATTTTTTAGCG
ATTGCAATTTATCCCCACAAGGGGAC	GGAAACGCCTTAGTGCGGTAAAGAGTCTCCTCACAGTGGT
ATTGCAATTTATCCCCGCAAGGGGAC	GGAAACCGCGGGAGTGAAATCTCCATTTCAGAACCATGCAA
ATTGCAATTTATCCCCGCAAGGGGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699017.1|WP_158395128.1|1058181_1058745_-|acetolactate-synthase-small-subunit	unknown	unknown	gnl|CDD|183365
NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl|CDD|227838
NZ_LR699017.1|WP_158395137.1|1069921_1070935_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NZ_LR699017.1|WP_158395133.1|1063762_1064635_-|DUF3990-domain-containing-protein	unknown	unknown	gnl|CDD|379042
NZ_LR699017.1|WP_158395130.1|1061140_1062346_+|ATP-binding-protein	unknown	unknown	gnl|CDD|377544
NZ_LR699017.1|WP_158395134.1|1064753_1066682_-|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl|CDD|350790
NZ_LR699017.1|WP_158395129.1|1058760_1060425_-|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl|CDD|181458
NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	gnl|CDD|378186
NZ_LR699017.1|WP_158395131.1|1062360_1063059_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395139.1|1071704_1071899_+|hypothetical-protein	unknown	unknown	gnl|CDD|274783
NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl|CDD|187811
NZ_LR699017.1|WP_158395132.1|1063300_1063756_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395135.1|1067020_1068112_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl|CDD|367635
NZ_LR699017.1|WP_158389185.1|1057067_1058087_-|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NZ_LR699017.1|WP_158395138.1|1070941_1071550_-|hypothetical-protein	unknown	unknown	gnl|CDD|378186
NZ_LR699017.1|WP_015565507.1|1055331_1056990_-|dihydroxy-acid-dehydratase	unknown	unknown	gnl|CDD|234861
NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl|CDD|187794
NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl|CDD|187793

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	2.7e-176	582.6	0.0
NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	1.9e-21	71.6	0.0
NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	8.5e-49	161.1	0.0
NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	1.1e-65	216.1	0.0
NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	1.8e-20	68.2	0.1
NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	1.9e-27	91.2	0.0
NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	3.3e-24	80.5	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR699017.1|WP_158395128.1|1058181_1058745_-|acetolactate-synthase-small-subunit	gnl|CDD|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	2.61387e-66
NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.8543e-12
NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.18876e-42
NZ_LR699017.1|WP_158395133.1|1063762_1064635_-|DUF3990-domain-containing-protein	gnl|CDD|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.29862e-35
NZ_LR699017.1|WP_158395130.1|1061140_1062346_+|ATP-binding-protein	gnl|CDD|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	7.17969e-101
NZ_LR699017.1|WP_015565507.1|1055331_1056990_-|dihydroxy-acid-dehydratase	gnl|CDD|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_LR699017.1|WP_158395129.1|1058760_1060425_-|biosynthetic-type-acetolactate-synthase-large-subunit	gnl|CDD|181458	PRK08527, PRK08527, acetolactate synthase large subunit.	0
NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein	gnl|CDD|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	3.58917e-16
NZ_LR699017.1|WP_158395139.1|1071704_1071899_+|hypothetical-protein	gnl|CDD|274783	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking].	7.90328e-05
NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.0944e-21
NZ_LR699017.1|WP_158395134.1|1064753_1066682_-|DEAD/DEAH-box-helicase-family-protein	gnl|CDD|350790	cd18032, DEXHc_RE_I_III_res, DEXH-box helicase domain of type III restriction enzyme res subunit. Members of this cd includes both type I and type III restriction enzymes. Both are hetero-oligomeric proteins. Type I REs are encoded by three closely linked genes: a specificity subunit (HsdS or S) for recognizing a DNA sequence, a methylation subunit (HsdM or M) for methylating the recognized target bases, and a restriction subunit (HsdR or R) for the translocation and random cleavage of non-methylated DNA. They show diverse catalytic activities, including methyltransferase (MTase), ATP hydrolase (ATPase), DNA translocation and restriction activities. These enzymes cut at a site that differs, and is a random distance (at least 1000 bp) away, from their recognition site. Cleavage at these random sites follows a process of DNA translocation, which shows that these enzymes are also molecular motors. The recognition site is asymmetrical and is composed of two specific portions: one containing 3-4 nucleotides, and another containing 4-5 nucleotides, separated by a non-specific spacer of about 6-8 nucleotides. Type III enzymes are composed of two subunits, Res and Mod. The Mod subunit recognizes the DNA sequence specific for the system and is a modification methyltransferase; as such, it is functionally equivalent to the M and S subunits of type I restriction endonucleases. Res is required for restriction, although it has no enzymatic activity on its own. Type III enzymes recognize short 5-6 bp-long asymmetric DNA sequences and cleave 25-27 bp downstream to leave short, single-stranded 5' protrusions. They require the presence of two inversely oriented unmethylated recognition sites for restriction to occur. These enzymes methylate only one strand of the DNA, at the N-6 position of adenosyl residues, so newly replicated DNA will have only one strand methylated, which is sufficient to protect against restriction. Both type I and type III REs are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	8.16717e-57
NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	2.25867e-30
NZ_LR699017.1|WP_158389185.1|1057067_1058087_-|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_LR699017.1|WP_158395138.1|1070941_1071550_-|hypothetical-protein	gnl|CDD|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	0.00475703
NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.81545e-75

Protein sequences

>NZ_LR699017.1|WP_158395135.1|1067020_1068112_+|hypothetical-protein
MDAESFAYIFASPNGEHQQDPLAKVKTAMLLIQKDSEARGYAPFIMRPSPLFTHGYFLLNSADAAAVNRICTGAATLQDEAAGVYDVDLARLWSSRWQNDFSFPQFKYLLYTHSDKLPLNAQLHLTPAMQLTLEWHANADARFSVLLRALKEIFFEAARSGQYLYDRDAAARLAQATGLSSTRATSAVRVVLAAVQSWQQHSSRLQRTRVLRCGTTQEGAEYSVVDPFISEFFHWLEQSFAVLHSGETCRYLPVNDSVQGSERLAPALGVLEELDLLHFALLGGSNSRLYLYVNQTQTLELADRGFYRNHLLERIAQRHTDAVRLMSWLFTSGFSSEQLWDRIEEYFLGLPIQGFDAPSAESR
>NZ_LR699017.1|WP_158395134.1|1064753_1066682_-|DEAD/DEAH-box-helicase-family-protein
MEPMKATSVNSRAEELFVQLFCEAFGPEKTENLQVQYPCVDIYGRHRYIDFALESPESKIAIEIDGETYHNPSKVSENKYADDLLKQNSLVYDNWKVYRWIYSQLEKQPEKVKDELITFLGTSPMFKAFEADLPVQMGQTIELRDYQQEATENLQKMREDGKTIALLYNATGVGKTITAATDAKAVGGRTLFLVNALKLASQAKETFAKVWPEATLGEYTGSQKDMTQTVIFATVQSISKDLEKFSPTDFDYLIVDECHHAAANTYQKIFTYFHPKFILGLTATPERSDGEDMLELFQNVAHKMDLKTAVERGVLVPIRCIRVKTNIDLTDVRINGIKYNSQDLESKLFIPERNQLIVDTYLKYVNGKKTVIFCASVDHAAEIAKYQPMAYVLAPENKRKLDQDMLFQGEKPEAWLDVPIDVSDYEIIDLFNWQNSVKDMISQIEFVRMVDVQSETVERYIKDGKVKPDLSIPFGDKRMFHYFREESIRNIAKQYGWDLIAPQNMADKFMKFIETMDMSYSYKPVLLKAIYEYMDSSGRVALPDVVDYFIDFYEDRKAHGMIAEKSTSIYQKGGYTRKDVEKNILSNPFKRFEDMRFLMRCKDVETIEVNPIIFRKLTREDWLHIVDVCDKSLEKYYLRLKK
>NZ_LR699017.1|WP_158395133.1|1063762_1064635_-|DUF3990-domain-containing-protein
MNTVFEIRSALQWSQSKLADEIGVSFATVNRWENEKSTPNRLAQEKMLAICEENHITLAEIIHDAIIGDATEISAMHPNKMVLYHGSKSGIQGKIKPASRDRCDFGAGFYMGTDPLQPLTLICDYEQSVFYILSVDLHSLKTLDVPADIEWAMLVAYHRGRMEAARGTKFFQKYQELDKDYDMVIGSIANDRMFYVLDSFFEGTITDTALVKSLSALKLGRQYVAITQKACDAVKIEREVQLLWMERQALKKASEQNRSNGIAFANQICKEYRREGRFFDEILDGAKQRR
>NZ_LR699017.1|WP_158395132.1|1063300_1063756_-|hypothetical-protein
MDLVQLKLCDIQGRLFELSLQAGYDSEDFMKRFMRSKVARDLDSEYNRMQWAGEEYLLEEFADECPQTQKGNARYDREVMYWTGYLYRYWHILTNEPSREIYAQAPSKTMNTNYLMFHTMAPELAIEDLKELHQQKKQSKKQKSRKPEQQI
>NZ_LR699017.1|WP_158395131.1|1062360_1063059_-|hypothetical-protein
MEKLEAKLKAVDWAVRDVLVGTMRSLQQLDICRKDCFYYIPAERLQDGDFPVHYVALYQSQYVFGAQAGVRYYGEVMKCSAVRRSAITEVGPRRGTEENLYYRFDIREWKQLNRPIEAKETGFVRDFTNLFLLEHSVQTPELWLRTEEEYRLCSALKRAVWGDTINEPDNGLAFEFRGFTVSFAEGKIFVSDEDRAFARYEISHFLQDPGAVVRGIRRECLRRDSMRELSKI
>NZ_LR699017.1|WP_158395130.1|1061140_1062346_+|ATP-binding-protein
MNLTEWNARLHGLVIFRALLDDDVIAKFVDLTDRMAAAPQSTGAVCDAAASFEAALFEHTTNFGEYLSAAVLEAETVCVRQAAVSEVPPVLQTALDNELDFLQQLCSLTLDELLDAAGAADKLPFLPRWETKAIDLHAAYAQRMSEVGKKGYGMFAKHHVFTVENGQLVPVRYPDPQRLDELPGYEQEREKVIANTRALLAGMPANNVLLYGDAGTGKSSTVKAIANEFAADGLRLVEVKKNQLYQIPDLMDKLAANPLKFILFIDDLSFTANDDNFAALKAILEGSVGGRARNIAVYATSNRRHLIKETLSDRTGDDIHEADTRQELMSLSARFGLTVTFQRPEKARFEVILTELAKQHGIEMPHDELLTKAEAFAIRAGGRSPRVAKQFIEQCAAGVQK
>NZ_LR699017.1|WP_158395129.1|1058760_1060425_-|biosynthetic-type-acetolactate-synthase-large-subunit
MQLNGSQIFVEVLCEQGVDTLFGYPGGAVLNLYDELYKNADRITHVLTAHEQGASHAADGYARATGRTGVVLATSGPGATNLVTGIATAYMDSVPMVAFTGNVTTEGLGKDGFQEAYIEGITMPITKHNFTVRRVEDLADTMRAAFRIAQSGRKGPVLVDIPKDVTAAVCEFTPKKPEPIRTVTTFNEEQVKWAAEIINGAQRPLVYFGGGVRSAASCQPLRDLLKKAEIPATYTLMAAGVVPYGDPMNIGMVGMHGCYTSNRAVADCDVLIAVGARFSDRVALNPKTFAKNATIIQIDIDASELGKNVDVDLAIVGDAAYVLNAMLPMIEDKKHPDWMKMIHEWQAQDYHPVSDASRLMPHQVIGEVCNQCGPEAVYVTDVGQHQMWAAQYIRHAKSRGFITSGGLGTMGFGYGAAIGAQMALGRDQRVVMFTGDGSFHMNLNEACTAVSYELPIITVIFNNQVLGMVRQWQTAFYGKRFSQTDPHRKTNFVKLAEGFGLKGYHCENLAQFQEAFADALKQKGPTWIECMIDKDEKVLPMIPGGGDINDIIMK
>NZ_LR699017.1|WP_158395128.1|1058181_1058745_-|acetolactate-synthase-small-subunit
MESNQRRVISLLVDNQSGVLARVSNLFCRRGFNIDSLTVSATNDPTVSRITVSVSGTEKELQQLILQTERLEVTRQVFVLNESTALERELLLLKVMANVTNRAELREIAGIYKAKIIDLSPDSMVFELTGRPEKIDAFLKLMSDYQILEQCRTGVTALERGGMHQHMQKPAQEVREAQFPLPGTRCR
>NZ_LR699017.1|WP_158389185.1|1057067_1058087_-|ketol-acid-reductoisomerase
MAIKKYYDSDCNLGVLDGKTVAVIGFGSQGHAHSENLAESGVNVVVGLRKGSAHWEKASEFAATHPNFKVMEVEEAAKAGDVVMMLVPDELCADIYNKQVAPYMTEGKALAFAHGFNIHFKTITAPKNVDVIMIAPKGPGHIVRRLYTEGEGCPSLICVEQDFTGKAKDIALAYASGIGAGRAGILETTFKEETETDLFGEQAVLCGGVCELIHAGFDTLVEAGYEPEMAYFETCHEMKLIVDLINEGGFSKMRYSISNTAEYGDYRTGKRLITAETRKEMKKVLTEIQDGTFASEFLTEMSPNGGRKVHFLAQRRMEAEHPIEKVGAELRGMMSWLKK
>NZ_LR699017.1|WP_015565507.1|1055331_1056990_-|dihydroxy-acid-dehydratase
MRSDNVTKGSERAPNRSLFYALGYTPEELDRPLIGVVSAYSEIVPGHMNLDKIADAVKAGVQMAGGTPILIPAIGVCDGIAMGHVGMKYSLASRELICDSVETMLMAHQLDGLVLVPNCDKIVPGMVMAAVRMDVPAVVCSGGPMLAGTYGGEEVSLSKMFEAVGAYKAGMITDEQLEDCTCNCCPSCGSCSGMYTANSMNCLCEAIGIALPGNGTIPAVYSKRLLLAKHAGMAVMDMVKKGITARQIINERSIRNALTCDMALGCSTNTVLHLLAIAYEAGVPIDLKLFNEISAKTPNLCHLAPAGPTHMPDLYAAGGIPAVQAELAKKGLLDLDVPTVTGKTLGENIKGAHILNDKAIRPIDDPYSQTGGLQILWGNIAPDGCVVKRSAVAPEMQEHSGPARVFNSEETAIAAIYAGKIVPGDVVVIRYEGPKGGPGMREMLNPTSALAGMKLDKTVALITDGRFSGASRGAAIGHVSPEAASGGPIGLVEEGDTIHIDIPNASITLEVPDEVLAQRKAKYVAPEPNIKTGWLSRYARMVTSANLGAVLK
>NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein
MGRDVLLLYMSPKNPNYKTQTNEGAVRYLIKEKETPDCILALCSETVRKKAVVEMPDGSTCTTLEYFRDALRRVGIPEERLVVIEVPDSMDDEKKQFQAISQLLEKINEGDTLSIDLSGGMRDTAMLLVTAARCMRDLRKVETRRVIYAELRGEEPVAHDRTQLYDLFDFVTAMDEFFSTGTAQKLKRYLWSEGEKDPVLHTLPTRINQFSEDLALCRVQKLNDDLNQIDQALKKTPKKSQNLTDLFFRLLKDRFSTEFAELLSSGEKALPALVSWCAGHGMYQQALTLLCEQMPEYVCQHIFVQPTPKGWEYLAAQMQNKGKPWVYPLFHFHFCRLTLMQKEYPYTTDLRLTLSRDDAEGNMLFGVANDAEMHDYLDMVLASGQLVIDPAIRPQLEQAALLYQRVMQYRNQINHASASDLGLQSERVLPLDTEHIKETLQKIAAYLHEIRPLKRNVPQGVKALPVTKTIPAGAVPNL
>NZ_LR699017.1|WP_158395137.1|1069921_1070935_-|hypothetical-protein
MNDVKTWADIDASPLLQLPPEQRKKLHDANDERFRTFWAECFLTAQAPGRGEEAWNSVDFCKAFLDAFDFWEAKPGQTFSMYLRTAVRHAQAHDQQQEEMAVTGFGRETNRKIKKALEYMEKNGITESVLCRDPEKEQVIADIVGVGVKTLREALRNKQSVLSLDDTGGEDSALGDRVVSQEKSVEEKVEQSSEMLAWLHRGIGLMNLQQKEKYGKTAGPLWSSVLMGFLRNNDALPPAEDAPARLANCDDLRPLEQDNCLWDILLLHRYVEFTVQPPYAPKALECAALHALLDSERNPAQDKTVAEFLGVSRAAVSQRRKTWQQKLVQMKTEQEDG
>NZ_LR699017.1|WP_158395138.1|1070941_1071550_-|hypothetical-protein
MLKTYITTVPLQGKLDPMLYQRDHAAPPTATCFPIVQVMRDTLEPGDTVQLLAIRQENADTARNYQRLLEELAQLGIAEDQVRQLHLPEDQRPETLIGLCRDLVDALPQVTRVYACITYGSKSIPVVTLTALTCAEATHTELEVGGVYYGEVKRENGRVLSARLYDMAALYQLAGLVGTMRDSKTAEQVFHQLIWMNEHRED
>NZ_LR699017.1|WP_158395139.1|1071704_1071899_+|hypothetical-protein
MFELISTLGCAAAGAVAGAVKGASIGIAVGGPVGAIAGTIPCAIVGGVTGALAGNNVGHRIDKR
>NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNVLTLQSTYGGLLHDTGKAVYRAGGQRGSHSEQGYQFLHGVLPGAGWAPALDCVRYHHSAALRGAAKALPADSPAYIVYLADDLSAAADRREVEGESSSFRRDLPLDTVFTHLNGSHPGWMMPAQPQDGSLKLPRQQQPLSASVYADAVRKLSECLPDLQPQPEWINSLLGLLETQFSCFPSSTFTGESPDVSLFDHAKTTAAIAACISEYVQANNITDLRKALFEQEKDFCQKDVFLLYTADFSRIQKFLYTVHTENALRSLRSRSFFLELLMEHYLDELLAGCGVSRANLIYSGGGHCYVLLPNTAAVADTLTRWNRQFNRWLQQQFGTQLFLANAWTPCSGNDLTNTPAEKSPYKELFRRVNRLLEQHKFHRYTAEDLRQLNSTATYPDGRECKVCGTSANLKDDLCPWCKLFVDLSIKIQNTRVLVVSRQPSAADDCTLPALDGGSEYLSLTDQLSARKRLASGEPVARVYTKNAPFTGLTYSTNLYVGDYAASNSMEELAEQSEGVRRIAVCRMDVDNLGHAFISGFEQENEKDPVKRMHYVTLSRTSAFSRQMSLFFKCYINGILEGLQVSIVYAGGDDVFLVGSWNDVLEAAQRIQRNFTAFSCGALTLSAGIGIFDDHYPIRLSAEETAALEEAAKHLPGKNAVALFTPERKAVRDAKGNLLVQPEQGHIYAWDTFRTKVLTEKVGCLQSFFGKDNAEHGNALLYNLLALLREAENDRINLARYAYLLARLSPKKNAPDYKLYEQFSHSMMDWALDAVQRHQLITAIYIYVYQNRKGGDTDGRME
>NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2
MAGWNDNGRSYGGGGYNNSRSGYSNSYNGNRSGSGSYNNRSSYGQQKELPPEITPKKVPEDYVDEAERIMRSLMSQPKKVTTSKIRNLLSLVTDIYNTENIRTEEKLLPESIVKLNLMRVRVAYECGRDDTVKSFVAQTNLLEYLKGISTDRADLIRFAHYMEALVAFHRYFGGKEG
>NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYGKILIRCDLEVRTGMHIGGSSAFSAIGAVDSPVVRDPYTGYPIVPGSSLKGKLRTLLARSTCQDIENMPAFDKDDERILRLFGSSEPVRRSRLQFADAFLSNAKELSNVGVTEVKTENAISRANSVANPRQIERVIAGAKFGVSIVYDVTDPAQVEEDLSLLAKGMKLLQMDYLGGHGSRGSGRVSLKNFALEGYGAQVDLSHLKSLFDEVDSYELFSV
>NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MNYFLFKLQFDTAVHFGGADSALSLYTSEETLRADTLFSALCHEALVQHGEESLEQLCAQVRQGKFLLSDTMPWYGETFYLPKPIAASESTEEVETTLRKKVKKLAWIPVLEFDRYARSLHEGHFTPDEQPESFGTHYEQTKAAVPMQGDTMPYQVGLFRFAPDCGLYFICGFTEDGQDEDLEYLLDWLGATGIGGKVSSGYGKFHVVAKIYLNEPFDEQTEWMYHALSAEHAPYLLLSTSLPQADELDSALKDASFQLVRRSGFMASDRVETPLKKKTQYALSAGSVLQNRYQGALYDVGLSDVHPVYRYSKPIFMGVTL
>NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MIQQDHLQIFDLTLNVWAPLFVGNGSSYTKKEYMYNTRNGKVSFLDEQKFFSFLVEHDLVDKYGQFMLSEQSNLWAFLTKDCGISDAELKTLTRYQIEVGDALDAEHSLKEIHAFQRDAQGHAYIPGSSIKGALRTAWLLSAVLADRSTGHSLVQNRRAAFPEETYVNQLHLHGSIASDAVNSIFRGIQVSDSLSISDNCMMLAGKTDSATDGGTHSINLCRECAAPGTAIRFKLTLDQSVLKGRITKDSLLESIQQFDAYYQQTYARHFTLPRGAVNLPQQPYLILGGGSGFFAKSLAYPYLGEKEGLRWTAEQMAQMFRRHKHERDAEKGISPHTMKYARFRGRLYPYGYCGVSIL
>NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIQQIQLVLSPPNDVRIPQSWSYRLYGWLMSQISSEFGEQMHLQGEHPIAHFLCFSPEKQSLIWTVNLLNDAARQVVFPVLESAKEIPLHELTLPVSEVRTFPAISAEELIRSGRSRSETRAKIAFLSPCAFKQSGRYTIFPQETLLLQSLIAHWNAAFPEYALIDSDALQALQQGLHIVDYNLHTTRYLLKETRIPAFQGNVTIEARLAPPLLELWNALLSFASHGGVGIKTTLGMGGAATDFYKKTPVI

Crispr_ID: NZ_LR699017_5

• CRISPR_ID: NZ_LR699017_5
• CRISPR_location: 1072541-1073222
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 10 spacers
• Cas_protein_info: csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

Consensus repeat of NZ_LR699017_5

Consensus_repeat	Method
TATTGCAGCTTATCCCCGCAAGGGGACGATAAC	PILER-CR
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	CRISPRCasFinder
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	CRT
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	PILER-CR

spacers of NZ_LR699017_5

>5.1|1072574|32|NZ_LR699017|PILER-CR
GCGAGAGCATAGAAGATGAGCTGTCCGACCTC
>5.2|1072639|34|NZ_LR699017|PILER-CR
TCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAA
>5.3|1072574|33|NZ_LR699017|CRISPRCasFinder,CRT
GCGAGAGCATAGAAGATGAGCTGTCCGACCTCG
>5.4|1072639|35|NZ_LR699017|CRISPRCasFinder,CRT
TCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAAT
>5.5|1072706|33|NZ_LR699017|CRISPRCasFinder,CRT
AGAACTGCAGTATGGATGTCGTTCACGCGGTAG
>5.6|1072771|33|NZ_LR699017|CRISPRCasFinder,CRT
ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
>5.7|1072836|34|NZ_LR699017|CRISPRCasFinder,CRT
GAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCAC
>5.8|1072902|33|NZ_LR699017|CRISPRCasFinder,CRT,PILER-CR
ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
>5.9|1072967|33|NZ_LR699017|CRISPRCasFinder,CRT,PILER-CR
TTCACTTTCTTGATCTGCTTCTTTTCGGCACGG
>5.10|1073032|33|NZ_LR699017|CRISPRCasFinder,CRT,PILER-CR
GTCACAGCTTGCTGCTTGTCCAGTTTGGCGTCC
>5.11|1073097|34|NZ_LR699017|CRISPRCasFinder,CRT,PILER-CR
GACCTTTGCCATTGCCTTCTTGTCCTTGCGGCTC
>5.12|1073163|28|NZ_LR699017|CRT
AAACTCCATTCTTATTTCAGATTAAATA

CRISPR arrays and Neighbor proteins around NZ_LR699017_5

CRISPR arrays

The CRISPR arrays of NZ_LR699017_5

>merge|NZ_LR699017|5|1072541-1073222|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
TATTGCAGCTTATCCCCGCAAGGGGACGATAACGCGAGAGCATAGAAGATGAGCTGTCCGACCTCGATTGCAGCTTATCCCCGCAAGGGGACGATAACTCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAATATTGCAGTTTATCCCCGCAAGGGGACGATAACAGAACTGCAGTATGGATGTCGTTCACGCGGTAGATTGCAGCTTATCCCCGCAAGGGGACGATAACATCAAAGATCTTTCTAAACTCCTCGATATCGTAATTGCAGCTTATCCCCGCAAGGGGACGATAACGAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCACATTGCAGCTTATCCCCGCAAGGGGACGATAACATCAAAGATCTTTCTAAACTCCTCGATATCGTAATTGCAGCTTATCCCTGCAAGGGGACGATAATTTCACTTTCTTGATCTGCTTCTTTTCGGCACGGATTGCAGCTTATCCCCGCAAAGGGACGATAACGTCACAGCTTGCTGCTTGTCCAGTTTGGCGTCCATTGCAGCTTATCCCCGCAAGGGGACGATAACGACCTTTGCCATTGCCTTCTTGTCCTTGCGGCTCATTGCAGCTTATCCCCGCAAGGGGGCGAAAACAAACTCCATTCTTATTTCAGATTAAATAAATAAGTACCATCCCCGTAAGGGGGCAAAAAC

>NZ_LR699017|5|2|1072541-1072705|PILER-CR
TATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GCGAGAGCATAGAAGATGAGCTGTCCGACCTC
GATTGCAGCTTATCCCCGCAAGGGGACGATAAC	TCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAA
TATTGCAGTTTATCCCCGCAAGGGGACGATAACAGAACTGCAGTATGGATGTCGTTCACGCGGTAGATTGCAGCTTATCCCCGCAAGGGGACGATAACATCAAAGATCTTTCTAAACTCCTCGATATCGTAATTGCAGCTTATCCCCGCAAGGGGACGATAACGAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCACATTGCAGCTTATCCCCGCAAGGGGACGATAAC	ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
ATTGCAGCTTATCCCTGCAAGGGGACGATAAT	TTCACTTTCTTGATCTGCTTCTTTTCGGCACGG
ATTGCAGCTTATCCCCGCAAAGGGACGATAAC	GTCACAGCTTGCTGCTTGTCCAGTTTGGCGTCC
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GACCTTTGCCATTGCCTTCTTGTCCTTGCGGCTC


>NZ_LR699017|5|5|1072542-1073162|CRISPRCasFinder
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GCGAGAGCATAGAAGATGAGCTGTCCGACCTCG
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	TCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAAT
ATTGCAGTTTATCCCCGCAAGGGGACGATAAC	AGAACTGCAGTATGGATGTCGTTCACGCGGTAG
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCAC
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
ATTGCAGCTTATCCCTGCAAGGGGACGATAAT	TTCACTTTCTTGATCTGCTTCTTTTCGGCACGG
ATTGCAGCTTATCCCCGCAAAGGGACGATAAC	GTCACAGCTTGCTGCTTGTCCAGTTTGGCGTCC
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GACCTTTGCCATTGCCTTCTTGTCCTTGCGGCTC
ATTGCAGCTTATCCCCGCAAGGGGGCGAAAAC

>NZ_LR699017|5|2|1072542-1073222|CRT
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GCGAGAGCATAGAAGATGAGCTGTCCGACCTCG
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	TCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAAT
ATTGCAGTTTATCCCCGCAAGGGGACGATAAC	AGAACTGCAGTATGGATGTCGTTCACGCGGTAG
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCAC
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
ATTGCAGCTTATCCCTGCAAGGGGACGATAAT	TTCACTTTCTTGATCTGCTTCTTTTCGGCACGG
ATTGCAGCTTATCCCCGCAAAGGGACGATAAC	GTCACAGCTTGCTGCTTGTCCAGTTTGGCGTCC
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GACCTTTGCCATTGCCTTCTTGTCCTTGCGGCTC
ATTGCAGCTTATCCCCGCAAGGGGGCGAAAAC	AAACTCCATTCTTATTTCAGATTAAATA
AATAAGTACCATCCCCGTAAGGGGGCAAAAAC

>NZ_LR699017|5|3|1072870-1073162|PILER-CR
	GCGAGAGCATAGAAGATGAGCTGTCCGACCTC
GATTGCAGCTTATCCCCGCAAGGGGACGATAAC	TCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAA
TATTGCAGTTTATCCCCGCAAGGGGACGATAACAGAACTGCAGTATGGATGTCGTTCACGCGGTAGATTGCAGCTTATCCCCGCAAGGGGACGATAACATCAAAGATCTTTCTAAACTCCTCGATATCGTAATTGCAGCTTATCCCCGCAAGGGGACGATAACGAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCACATTGCAGCTTATCCCCGCAAGGGGACGATAAC	ATCAAAGATCTTTCTAAACTCCTCGATATCGTA
ATTGCAGCTTATCCCTGCAAGGGGACGATAAT	TTCACTTTCTTGATCTGCTTCTTTTCGGCACGG
ATTGCAGCTTATCCCCGCAAAGGGACGATAAC	GTCACAGCTTGCTGCTTGTCCAGTTTGGCGTCC
ATTGCAGCTTATCCCCGCAAGGGGACGATAAC	GACCTTTGCCATTGCCTTCTTGTCCTTGCGGCTC
ATTGCAGCTTATCCCCGCAAGGGGGCGAAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699017.1|WP_158395147.1|1083578_1083977_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl|CDD|239517
NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl|CDD|227838
NZ_LR699017.1|WP_158395137.1|1069921_1070935_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395146.1|1080027_1083189_+|DUF3427-domain-containing-protein	unknown	unknown	gnl|CDD|197297
NZ_LR699017.1|WP_158395133.1|1063762_1064635_-|DUF3990-domain-containing-protein	unknown	unknown	gnl|CDD|379042
NZ_LR699017.1|WP_158395130.1|1061140_1062346_+|ATP-binding-protein	unknown	unknown	gnl|CDD|377544
NZ_LR699017.1|WP_158395132.1|1063300_1063756_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395139.1|1071704_1071899_+|hypothetical-protein	unknown	unknown	gnl|CDD|274783
NZ_LR699017.1|WP_158395131.1|1062360_1063059_-|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	gnl|CDD|378186
NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl|CDD|187811
NZ_LR699017.1|WP_147323237.1|1083195_1083564_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395149.1|1084800_1085001_+|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl|CDD|379084
NZ_LR699017.1|WP_158395135.1|1067020_1068112_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_158395134.1|1064753_1066682_-|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl|CDD|350790
NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl|CDD|367635
NZ_LR699017.1|WP_158395138.1|1070941_1071550_-|hypothetical-protein	unknown	unknown	gnl|CDD|378186
NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl|CDD|187794
NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl|CDD|187793

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	2.7e-176	582.6	0.0
NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	1.9e-21	71.6	0.0
NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	8.5e-49	161.1	0.0
NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	1.1e-65	216.1	0.0
NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	1.8e-20	68.2	0.1
NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	1.9e-27	91.2	0.0
NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	3.3e-24	80.5	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR699017.1|WP_158395147.1|1083578_1083977_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl|CDD|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	1.25796e-52
NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.18876e-42
NZ_LR699017.1|WP_158395146.1|1080027_1083189_+|DUF3427-domain-containing-protein	gnl|CDD|197297	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	5.55325e-87
NZ_LR699017.1|WP_158395133.1|1063762_1064635_-|DUF3990-domain-containing-protein	gnl|CDD|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.29862e-35
NZ_LR699017.1|WP_158395130.1|1061140_1062346_+|ATP-binding-protein	gnl|CDD|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	7.17969e-101
NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.8543e-12
NZ_LR699017.1|WP_158395139.1|1071704_1071899_+|hypothetical-protein	gnl|CDD|274783	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking].	7.90328e-05
NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein	gnl|CDD|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	3.58917e-16
NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_LR699017.1|WP_158395149.1|1084800_1085001_+|zinc-ribbon-domain-containing-protein	gnl|CDD|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	5.37469e-07
NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.0944e-21
NZ_LR699017.1|WP_158395134.1|1064753_1066682_-|DEAD/DEAH-box-helicase-family-protein	gnl|CDD|350790	cd18032, DEXHc_RE_I_III_res, DEXH-box helicase domain of type III restriction enzyme res subunit. Members of this cd includes both type I and type III restriction enzymes. Both are hetero-oligomeric proteins. Type I REs are encoded by three closely linked genes: a specificity subunit (HsdS or S) for recognizing a DNA sequence, a methylation subunit (HsdM or M) for methylating the recognized target bases, and a restriction subunit (HsdR or R) for the translocation and random cleavage of non-methylated DNA. They show diverse catalytic activities, including methyltransferase (MTase), ATP hydrolase (ATPase), DNA translocation and restriction activities. These enzymes cut at a site that differs, and is a random distance (at least 1000 bp) away, from their recognition site. Cleavage at these random sites follows a process of DNA translocation, which shows that these enzymes are also molecular motors. The recognition site is asymmetrical and is composed of two specific portions: one containing 3-4 nucleotides, and another containing 4-5 nucleotides, separated by a non-specific spacer of about 6-8 nucleotides. Type III enzymes are composed of two subunits, Res and Mod. The Mod subunit recognizes the DNA sequence specific for the system and is a modification methyltransferase; as such, it is functionally equivalent to the M and S subunits of type I restriction endonucleases. Res is required for restriction, although it has no enzymatic activity on its own. Type III enzymes recognize short 5-6 bp-long asymmetric DNA sequences and cleave 25-27 bp downstream to leave short, single-stranded 5' protrusions. They require the presence of two inversely oriented unmethylated recognition sites for restriction to occur. These enzymes methylate only one strand of the DNA, at the N-6 position of adenosyl residues, so newly replicated DNA will have only one strand methylated, which is sufficient to protect against restriction. Both type I and type III REs are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	8.16717e-57
NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.81545e-75
NZ_LR699017.1|WP_158395138.1|1070941_1071550_-|hypothetical-protein	gnl|CDD|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	0.00475703
NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	2.25867e-30

Protein sequences

>NZ_LR699017.1|WP_158395139.1|1071704_1071899_+|hypothetical-protein
MFELISTLGCAAAGAVAGAVKGASIGIAVGGPVGAIAGTIPCAIVGGVTGALAGNNVGHRIDKR
>NZ_LR699017.1|WP_158395138.1|1070941_1071550_-|hypothetical-protein
MLKTYITTVPLQGKLDPMLYQRDHAAPPTATCFPIVQVMRDTLEPGDTVQLLAIRQENADTARNYQRLLEELAQLGIAEDQVRQLHLPEDQRPETLIGLCRDLVDALPQVTRVYACITYGSKSIPVVTLTALTCAEATHTELEVGGVYYGEVKRENGRVLSARLYDMAALYQLAGLVGTMRDSKTAEQVFHQLIWMNEHRED
>NZ_LR699017.1|WP_158395137.1|1069921_1070935_-|hypothetical-protein
MNDVKTWADIDASPLLQLPPEQRKKLHDANDERFRTFWAECFLTAQAPGRGEEAWNSVDFCKAFLDAFDFWEAKPGQTFSMYLRTAVRHAQAHDQQQEEMAVTGFGRETNRKIKKALEYMEKNGITESVLCRDPEKEQVIADIVGVGVKTLREALRNKQSVLSLDDTGGEDSALGDRVVSQEKSVEEKVEQSSEMLAWLHRGIGLMNLQQKEKYGKTAGPLWSSVLMGFLRNNDALPPAEDAPARLANCDDLRPLEQDNCLWDILLLHRYVEFTVQPPYAPKALECAALHALLDSERNPAQDKTVAEFLGVSRAAVSQRRKTWQQKLVQMKTEQEDG
>NZ_LR699017.1|WP_160141210.1|1068483_1069920_-|hypothetical-protein
MGRDVLLLYMSPKNPNYKTQTNEGAVRYLIKEKETPDCILALCSETVRKKAVVEMPDGSTCTTLEYFRDALRRVGIPEERLVVIEVPDSMDDEKKQFQAISQLLEKINEGDTLSIDLSGGMRDTAMLLVTAARCMRDLRKVETRRVIYAELRGEEPVAHDRTQLYDLFDFVTAMDEFFSTGTAQKLKRYLWSEGEKDPVLHTLPTRINQFSEDLALCRVQKLNDDLNQIDQALKKTPKKSQNLTDLFFRLLKDRFSTEFAELLSSGEKALPALVSWCAGHGMYQQALTLLCEQMPEYVCQHIFVQPTPKGWEYLAAQMQNKGKPWVYPLFHFHFCRLTLMQKEYPYTTDLRLTLSRDDAEGNMLFGVANDAEMHDYLDMVLASGQLVIDPAIRPQLEQAALLYQRVMQYRNQINHASASDLGLQSERVLPLDTEHIKETLQKIAAYLHEIRPLKRNVPQGVKALPVTKTIPAGAVPNL
>NZ_LR699017.1|WP_158395135.1|1067020_1068112_+|hypothetical-protein
MDAESFAYIFASPNGEHQQDPLAKVKTAMLLIQKDSEARGYAPFIMRPSPLFTHGYFLLNSADAAAVNRICTGAATLQDEAAGVYDVDLARLWSSRWQNDFSFPQFKYLLYTHSDKLPLNAQLHLTPAMQLTLEWHANADARFSVLLRALKEIFFEAARSGQYLYDRDAAARLAQATGLSSTRATSAVRVVLAAVQSWQQHSSRLQRTRVLRCGTTQEGAEYSVVDPFISEFFHWLEQSFAVLHSGETCRYLPVNDSVQGSERLAPALGVLEELDLLHFALLGGSNSRLYLYVNQTQTLELADRGFYRNHLLERIAQRHTDAVRLMSWLFTSGFSSEQLWDRIEEYFLGLPIQGFDAPSAESR
>NZ_LR699017.1|WP_158395134.1|1064753_1066682_-|DEAD/DEAH-box-helicase-family-protein
MEPMKATSVNSRAEELFVQLFCEAFGPEKTENLQVQYPCVDIYGRHRYIDFALESPESKIAIEIDGETYHNPSKVSENKYADDLLKQNSLVYDNWKVYRWIYSQLEKQPEKVKDELITFLGTSPMFKAFEADLPVQMGQTIELRDYQQEATENLQKMREDGKTIALLYNATGVGKTITAATDAKAVGGRTLFLVNALKLASQAKETFAKVWPEATLGEYTGSQKDMTQTVIFATVQSISKDLEKFSPTDFDYLIVDECHHAAANTYQKIFTYFHPKFILGLTATPERSDGEDMLELFQNVAHKMDLKTAVERGVLVPIRCIRVKTNIDLTDVRINGIKYNSQDLESKLFIPERNQLIVDTYLKYVNGKKTVIFCASVDHAAEIAKYQPMAYVLAPENKRKLDQDMLFQGEKPEAWLDVPIDVSDYEIIDLFNWQNSVKDMISQIEFVRMVDVQSETVERYIKDGKVKPDLSIPFGDKRMFHYFREESIRNIAKQYGWDLIAPQNMADKFMKFIETMDMSYSYKPVLLKAIYEYMDSSGRVALPDVVDYFIDFYEDRKAHGMIAEKSTSIYQKGGYTRKDVEKNILSNPFKRFEDMRFLMRCKDVETIEVNPIIFRKLTREDWLHIVDVCDKSLEKYYLRLKK
>NZ_LR699017.1|WP_158395133.1|1063762_1064635_-|DUF3990-domain-containing-protein
MNTVFEIRSALQWSQSKLADEIGVSFATVNRWENEKSTPNRLAQEKMLAICEENHITLAEIIHDAIIGDATEISAMHPNKMVLYHGSKSGIQGKIKPASRDRCDFGAGFYMGTDPLQPLTLICDYEQSVFYILSVDLHSLKTLDVPADIEWAMLVAYHRGRMEAARGTKFFQKYQELDKDYDMVIGSIANDRMFYVLDSFFEGTITDTALVKSLSALKLGRQYVAITQKACDAVKIEREVQLLWMERQALKKASEQNRSNGIAFANQICKEYRREGRFFDEILDGAKQRR
>NZ_LR699017.1|WP_158395132.1|1063300_1063756_-|hypothetical-protein
MDLVQLKLCDIQGRLFELSLQAGYDSEDFMKRFMRSKVARDLDSEYNRMQWAGEEYLLEEFADECPQTQKGNARYDREVMYWTGYLYRYWHILTNEPSREIYAQAPSKTMNTNYLMFHTMAPELAIEDLKELHQQKKQSKKQKSRKPEQQI
>NZ_LR699017.1|WP_158395131.1|1062360_1063059_-|hypothetical-protein
MEKLEAKLKAVDWAVRDVLVGTMRSLQQLDICRKDCFYYIPAERLQDGDFPVHYVALYQSQYVFGAQAGVRYYGEVMKCSAVRRSAITEVGPRRGTEENLYYRFDIREWKQLNRPIEAKETGFVRDFTNLFLLEHSVQTPELWLRTEEEYRLCSALKRAVWGDTINEPDNGLAFEFRGFTVSFAEGKIFVSDEDRAFARYEISHFLQDPGAVVRGIRRECLRRDSMRELSKI
>NZ_LR699017.1|WP_158395130.1|1061140_1062346_+|ATP-binding-protein
MNLTEWNARLHGLVIFRALLDDDVIAKFVDLTDRMAAAPQSTGAVCDAAASFEAALFEHTTNFGEYLSAAVLEAETVCVRQAAVSEVPPVLQTALDNELDFLQQLCSLTLDELLDAAGAADKLPFLPRWETKAIDLHAAYAQRMSEVGKKGYGMFAKHHVFTVENGQLVPVRYPDPQRLDELPGYEQEREKVIANTRALLAGMPANNVLLYGDAGTGKSSTVKAIANEFAADGLRLVEVKKNQLYQIPDLMDKLAANPLKFILFIDDLSFTANDDNFAALKAILEGSVGGRARNIAVYATSNRRHLIKETLSDRTGDDIHEADTRQELMSLSARFGLTVTFQRPEKARFEVILTELAKQHGIEMPHDELLTKAEAFAIRAGGRSPRVAKQFIEQCAAGVQK
>NZ_LR699017.1|WP_160141211.1|1073460_1075845_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNVLTLQSTYGGLLHDTGKAVYRAGGQRGSHSEQGYQFLHGVLPGAGWAPALDCVRYHHSAALRGAAKALPADSPAYIVYLADDLSAAADRREVEGESSSFRRDLPLDTVFTHLNGSHPGWMMPAQPQDGSLKLPRQQQPLSASVYADAVRKLSECLPDLQPQPEWINSLLGLLETQFSCFPSSTFTGESPDVSLFDHAKTTAAIAACISEYVQANNITDLRKALFEQEKDFCQKDVFLLYTADFSRIQKFLYTVHTENALRSLRSRSFFLELLMEHYLDELLAGCGVSRANLIYSGGGHCYVLLPNTAAVADTLTRWNRQFNRWLQQQFGTQLFLANAWTPCSGNDLTNTPAEKSPYKELFRRVNRLLEQHKFHRYTAEDLRQLNSTATYPDGRECKVCGTSANLKDDLCPWCKLFVDLSIKIQNTRVLVVSRQPSAADDCTLPALDGGSEYLSLTDQLSARKRLASGEPVARVYTKNAPFTGLTYSTNLYVGDYAASNSMEELAEQSEGVRRIAVCRMDVDNLGHAFISGFEQENEKDPVKRMHYVTLSRTSAFSRQMSLFFKCYINGILEGLQVSIVYAGGDDVFLVGSWNDVLEAAQRIQRNFTAFSCGALTLSAGIGIFDDHYPIRLSAEETAALEEAAKHLPGKNAVALFTPERKAVRDAKGNLLVQPEQGHIYAWDTFRTKVLTEKVGCLQSFFGKDNAEHGNALLYNLLALLREAENDRINLARYAYLLARLSPKKNAPDYKLYEQFSHSMMDWALDAVQRHQLITAIYIYVYQNRKGGDTDGRME
>NZ_LR699017.1|WP_158395141.1|1075828_1076362_+|type-III-A-CRISPR-associated-protein-Csm2
MAGWNDNGRSYGGGGYNNSRSGYSNSYNGNRSGSGSYNNRSSYGQQKELPPEITPKKVPEDYVDEAERIMRSLMSQPKKVTTSKIRNLLSLVTDIYNTENIRTEEKLLPESIVKLNLMRVRVAYECGRDDTVKSFVAQTNLLEYLKGISTDRADLIRFAHYMEALVAFHRYFGGKEG
>NZ_LR699017.1|WP_158395142.1|1076364_1077030_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYGKILIRCDLEVRTGMHIGGSSAFSAIGAVDSPVVRDPYTGYPIVPGSSLKGKLRTLLARSTCQDIENMPAFDKDDERILRLFGSSEPVRRSRLQFADAFLSNAKELSNVGVTEVKTENAISRANSVANPRQIERVIAGAKFGVSIVYDVTDPAQVEEDLSLLAKGMKLLQMDYLGGHGSRGSGRVSLKNFALEGYGAQVDLSHLKSLFDEVDSYELFSV
>NZ_LR699017.1|WP_160141212.1|1077010_1077976_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MNYFLFKLQFDTAVHFGGADSALSLYTSEETLRADTLFSALCHEALVQHGEESLEQLCAQVRQGKFLLSDTMPWYGETFYLPKPIAASESTEEVETTLRKKVKKLAWIPVLEFDRYARSLHEGHFTPDEQPESFGTHYEQTKAAVPMQGDTMPYQVGLFRFAPDCGLYFICGFTEDGQDEDLEYLLDWLGATGIGGKVSSGYGKFHVVAKIYLNEPFDEQTEWMYHALSAEHAPYLLLSTSLPQADELDSALKDASFQLVRRSGFMASDRVETPLKKKTQYALSAGSVLQNRYQGALYDVGLSDVHPVYRYSKPIFMGVTL
>NZ_LR699017.1|WP_158395144.1|1077972_1079049_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MIQQDHLQIFDLTLNVWAPLFVGNGSSYTKKEYMYNTRNGKVSFLDEQKFFSFLVEHDLVDKYGQFMLSEQSNLWAFLTKDCGISDAELKTLTRYQIEVGDALDAEHSLKEIHAFQRDAQGHAYIPGSSIKGALRTAWLLSAVLADRSTGHSLVQNRRAAFPEETYVNQLHLHGSIASDAVNSIFRGIQVSDSLSISDNCMMLAGKTDSATDGGTHSINLCRECAAPGTAIRFKLTLDQSVLKGRITKDSLLESIQQFDAYYQQTYARHFTLPRGAVNLPQQPYLILGGGSGFFAKSLAYPYLGEKEGLRWTAEQMAQMFRRHKHERDAEKGISPHTMKYARFRGRLYPYGYCGVSIL
>NZ_LR699017.1|WP_158395145.1|1079045_1079801_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIQQIQLVLSPPNDVRIPQSWSYRLYGWLMSQISSEFGEQMHLQGEHPIAHFLCFSPEKQSLIWTVNLLNDAARQVVFPVLESAKEIPLHELTLPVSEVRTFPAISAEELIRSGRSRSETRAKIAFLSPCAFKQSGRYTIFPQETLLLQSLIAHWNAAFPEYALIDSDALQALQQGLHIVDYNLHTTRYLLKETRIPAFQGNVTIEARLAPPLLELWNALLSFASHGGVGIKTTLGMGGAATDFYKKTPVI
>NZ_LR699017.1|WP_158395146.1|1080027_1083189_+|DUF3427-domain-containing-protein
MLYPGLYEQVINNALNSELAKIPEARKSTAPIDTAEAAKVLAQYLTDVVQKGLENVQDNGGGIEAQIQLANQIVTTIQNTTQEADFAALGVDQRAEQLLALLQQNDPRLATTGKSAKDLDRPETSIAQSSLFTGAIHEPQMYTELKKEIVSADRIDMLVSFIKWSGLRLIMDELRQFAQSGGELRIITTSYMGATDVKAIEELRALPNTKIKVSYDTKRTRLHAKTYVFYRDTGFTTAYVGSSNLSNAAISSGLEWNVKVTRKDLPETIEKIAATFESYWNSSEFEYYDEGQRERLTRALKAEKYSETDHIGIYALDILPYSYQQEILDRLDAERTVRGYNRNLVVAATGTGKTVISALDYKRFCKQHPGQPCRLLFVAHREEILKQSLYTFRAVLKDANFGELYVGSHKADSIDHLFVSIQTFNSQELAAKTAADFYDYIVVDEFHHAAAPTYQKLLEYYQPKILMGLTATPERMDGKSVLDYFGGRIAAEIRLPEAIDRKLLCPFQYFGVTDAADLSSLKWRTGGYDKNELSNLYTLSGMVAERRADLVVNSILKYVTDIEEVKGLGFCVSISHAQFMARYFNTHGIPSMALTGDSPDEERNAAKQRLVSGELRFLFVVDIYNEGVDIPEVNTVLFLRPTESLTVFLQQLGRGLRLAENKDCLTVLDFIGQANKKYNFEEKFAALLSNTTRSVSRELKEGFVSAPKGCYIQLEKIAAKYVLDNISASYDRTSGLVARAAAFTEDTGLPLTLGNFLDYYHLDPRAIYSKKVCFSRLCIRAGAAPDFAEPLEETMTKALARFAVVDSRRWIRFLLGLLPKLDNTDFAALSPVEKRMLQMFYVTLWGKTAESWEDEEVLDNLYALSDSPVLLGELQALLQYQYDRIDFIDEPVDVGFDCPLDLHCTYTRDQLLVALDFLKPATVREGVKWLPEKQLDVFFVTLNKADKDYSPTTMYKDYSINESLLHWQSQSTTAENSATGQRYIHHREKGSRVLLFVREFKAEARFGGAGAYTYLGTVNYVKHEGSRPMNITWKLDRPIPAKFLKKTNKLIVG
>NZ_LR699017.1|WP_147323237.1|1083195_1083564_+|hypothetical-protein
MDDMLARTIIETLAKGINPLTGWILSENDSCAQEEIQEALKIVLEHCSIESTAEYLKSLPRNKKAERYSRAGTAWSQKEERELLRLHQQGNSVKRISLILKRSTGAIESKLRKLGCPLYYEK
>NZ_LR699017.1|WP_158395147.1|1083578_1083977_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MKMIRVVAAVICDDIQTKHKIYATARGYGEYKGGWEFPGGKIEPGETPQQALKREIREELDTEIAVGNLIDTIEYDYPAFHLSMDCFWCEVVSGELVLKEAEAARWLTKEELDSVPWLPADRILLAQIRPAL
>NZ_LR699017.1|WP_158395149.1|1084800_1085001_+|zinc-ribbon-domain-containing-protein
MFCENCGHQISDTAKFCSACGHPVGTAPSPGAVAPPAVPAKRESPRLKASSGNGSITKMSGTRRKP

Crispr_ID: NZ_LR699017_6

• CRISPR_ID: NZ_LR699017_6
• CRISPR_location: 1531286-1531399
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LR699017_6

Consensus_repeat	Method
GGGGCAAGCGCCCTCGCAAGCGCCGCA	CRISPRCasFinder

spacers of NZ_LR699017_6

>6.1|1531313|60|NZ_LR699017|CRISPRCasFinder
ATCGATGCAAGCGTCTGCGTTCACAACTGCAACGCCGCCCTCAACAGCGACTGCACCAAC

CRISPR arrays and Neighbor proteins around NZ_LR699017_6

CRISPR arrays

The CRISPR arrays of NZ_LR699017_6

>merge|NZ_LR699017|6|1531286-1531399|CRISPRCasFinder
GGGGCAAGCGCCCTCGCAAGCGCCGCAATCGATGCAAGCGTCTGCGTTCACAACTGCAACGCCGCCCTCAACAGCGACTGCACCAACGGGGCAAGCGCCCTCGCAAGCGCCGCA

>NZ_LR699017|6|6|1531286-1531399|CRISPRCasFinder
GGGGCAAGCGCCCTCGCAAGCGCCGCA	ATCGATGCAAGCGTCTGCGTTCACAACTGCAACGCCGCCCTCAACAGCGACTGCACCAAC
GGGGCAAGCGCCCTCGCAAGCGCCGCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699017.1|WP_158395605.1|1543457_1544282_-|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl|CDD|372574
NZ_LR699017.1|WP_158395607.1|1544481_1545777_-|trigger-factor	unknown	unknown	gnl|CDD|234956
NZ_LR699017.1|WP_158395587.1|1528296_1529064_-|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl|CDD|223417
NZ_LR699017.1|WP_158395593.1|1533018_1536945_+|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl|CDD|223911
NZ_LR699017.1|WP_149794755.1|1529060_1529552_-|YfcE-family-phosphodiesterase	unknown	unknown	gnl|CDD|223695
NZ_LR699017.1|WP_158395599.1|1539715_1542055_+|ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|223447
NZ_LR699017.1|WP_158395603.1|1542617_1543394_+|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl|CDD|376667
NZ_LR699017.1|WP_158395609.1|1545943_1546627_+|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	unknown	unknown	gnl|CDD|129802
NZ_LR699017.1|WP_158395583.1|1527077_1527719_-|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|366759
NZ_LR699017.1|WP_158395577.1|1523784_1524744_+|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl|CDD|224600
NZ_LR699017.1|WP_158395589.1|1529575_1530427_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|381175
NZ_LR699017.1|WP_158395597.1|1538479_1539505_+|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl|CDD|177883
NZ_LR699017.1|WP_158395595.1|1537154_1538228_+|galactose-mutarotase	unknown	unknown	gnl|CDD|185696
NZ_LR699017.1|WP_158395601.1|1542183_1542621_+|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|224759
NZ_LR699017.1|WP_158395581.1|1526110_1527070_-|hypothetical-protein	unknown	unknown	gnl|CDD|273213
NZ_LR699017.1|WP_158395575.1|1523154_1523679_-|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl|CDD|100051
NZ_LR699017.1|WP_158395591.1|1530447_1531128_-|methyltransferase	unknown	unknown	gnl|CDD|226608
NZ_LR699017.1|WP_158395585.1|1527733_1528312_+|hypothetical-protein	unknown	unknown	unknown
NZ_LR699017.1|WP_149794758.1|1531722_1532664_-|stage-0-sporulation-family-protein	unknown	unknown	gnl|CDD|224688
NZ_LR699017.1|WP_158395579.1|1524771_1526061_+|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl|CDD|224600

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LR699017.1|WP_158395605.1|1543457_1544282_-|DUF4097-family-beta-strand-repeat-protein	gnl|CDD|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	2.55475e-05
NZ_LR699017.1|WP_158395607.1|1544481_1545777_-|trigger-factor	gnl|CDD|234956	PRK01490, tig, trigger factor; Provisional.	6.24939e-105
NZ_LR699017.1|WP_158395587.1|1528296_1529064_-|biotin--[acetyl-CoA-carboxylase]-ligase	gnl|CDD|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	2.90991e-68
NZ_LR699017.1|WP_158395593.1|1533018_1536945_+|efflux-RND-transporter-permease-subunit	gnl|CDD|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	1.24843e-144
NZ_LR699017.1|WP_149794755.1|1529060_1529552_-|YfcE-family-phosphodiesterase	gnl|CDD|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	2.11777e-37
NZ_LR699017.1|WP_158395603.1|1542617_1543394_+|sulfite-exporter-TauE/SafE-family-protein	gnl|CDD|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.6942e-21
NZ_LR699017.1|WP_158395609.1|1545943_1546627_+|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	gnl|CDD|129802	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit. This enzyme is also called serine deaminase. This model describes the beta chain of an iron-sulfur-dependent L-serine dehydratase, as in Bacillus subtilis. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in E. coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	5.62303e-52
NZ_LR699017.1|WP_158395583.1|1527077_1527719_-|rhomboid-family-intramembrane-serine-protease	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	0.00340055
NZ_LR699017.1|WP_158395577.1|1523784_1524744_+|D-alanyl-D-alanine-carboxypeptidase	gnl|CDD|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	4.19794e-65
NZ_LR699017.1|WP_158395589.1|1529575_1530427_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl|CDD|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	1.44408e-109
NZ_LR699017.1|WP_158395597.1|1538479_1539505_+|UDP-glucose-4-epimerase-GalE	gnl|CDD|177883	PLN02240, PLN02240, UDP-glucose 4-epimerase.	0
NZ_LR699017.1|WP_158395595.1|1537154_1538228_+|galactose-mutarotase	gnl|CDD|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	7.7641e-148
NZ_LR699017.1|WP_158395601.1|1542183_1542621_+|winged-helix-turn-helix-transcriptional-regulator	gnl|CDD|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.74354e-12
NZ_LR699017.1|WP_149794758.1|1531722_1532664_-|stage-0-sporulation-family-protein	gnl|CDD|224688	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown].	1.11148e-84
NZ_LR699017.1|WP_158395575.1|1523154_1523679_-|gamma-carbonic-anhydrase-family-protein	gnl|CDD|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	8.58433e-75
NZ_LR699017.1|WP_158395591.1|1530447_1531128_-|methyltransferase	gnl|CDD|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.05796e-56
NZ_LR699017.1|WP_158395599.1|1539715_1542055_+|ferrous-iron-transport-protein-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_LR699017.1|WP_158395581.1|1526110_1527070_-|hypothetical-protein	gnl|CDD|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	2.28283e-33
NZ_LR699017.1|WP_158395579.1|1524771_1526061_+|D-alanyl-D-alanine-carboxypeptidase	gnl|CDD|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	8.3112e-69

Protein sequences

>NZ_LR699017.1|WP_158395591.1|1530447_1531128_-|methyltransferase
MEHSTEILYNKTEVYCSAVHRFGSDALLLARFCEPRRSQKAADLCSGCGIVSLEWHDRGHRGPCAAVELQPEASALLQEAVAAQGIEHITPYLTDLRTFREGEGQFDVCACNPPYFTAGPQSTDAGRATARHETDCTLEDVCACGFRLLKDGGKLSLCHRPERLAEVLAVLRAHRLEPKRLAFVKNKPDAAPWLFLVEAQKNRRTGLRIEPDVLITAGAAMYGEVK
>NZ_LR699017.1|WP_158395589.1|1529575_1530427_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MAGILYIVATPIGNLDDMPPRVAATFGAADFVAAEDTRVTMRLLNYLGLKKPMVSYYEHALQKGEGILRRIEAGENCALCSDAGMPCVSDPGEVIVRDALARGIKVVPVPAASACVTALAVSGQDTSRWVFEGFLPVNRKQKKERLAELLGEKRTVIFYEAPHKLRTTLDDLVNAFGPERSITLCRELTKLHEEIWKTTLGEAQAHYAANEPRGEYVLVMAGAPVSTEPEAEMTLEQAAQRALELTGQGFGPTAAAKAAAQGTPYSKSEVYKALLTIQQRDPE
>NZ_LR699017.1|WP_149794755.1|1529060_1529552_-|YfcE-family-phosphodiesterase
MTKLLILSDSHNSRLAIENILAAEADSIDALIFLGDGLRDLEQALTFYPSLRAYAVAGNCDFGALEPLDGLAAFDGVVVFYTHGHMYGVKYDLDTLADAAAARGANVALFGHTHIPVAEERGGVFLFNPGSCGRCYTGPNTYGILTLADGKVVSHEHKEVPKA
>NZ_LR699017.1|WP_158395587.1|1528296_1529064_-|biotin--[acetyl-CoA-carboxylase]-ligase
MSINEVRWLSECGSTNAYAKEHFEEFGPVGAVYTTNQTAGRGRLGRSWVNAEGRALYYTAVIREPLAQPATLPLLASLAVRDQLAQRYGVDCQIKWPNDLLLNGKKIVGILCESVSYGYQMQGRGIVCGIGINLAQPQSYFDAANLPNGTSLELQGAKVDLAADPQWLAEALTDFGFDRPLYTFAREGFAPFRDEYKAACVNLGRHVTFDLPGGGTGSGTAIDVDADGQLIVRTDSGEVKVFTGEVSVHGIYGAV
>NZ_LR699017.1|WP_158395585.1|1527733_1528312_+|hypothetical-protein
MKRNFCGPCPGPFSVFHCIMFARPIQENPWEVRDSILGRVSEEYPIWNDFLTFSTGFSTDFVKKKWVFPQCFPLFPPSFPQKIELWVIHDVFQNGKRGKIWREKGSKSLFLKRKSRPKIYFLRRFALGAKAPLPSGIFGAGVFHKHCLAKTMCGKPWENPSFPQTLQGEKKSAPGAGRPAEALECWKIYTAP
>NZ_LR699017.1|WP_158395583.1|1527077_1527719_-|rhomboid-family-intramembrane-serine-protease
MNWISRLERKYGRFCIPNLISIIVGGQILVYAIELFVNQFISVYLGLSRSLLLMGQVWRLITFVFIPFSGGGPLSVILGIYFTWFIGTALEKEWGDFRFNLYFLLGMIGTVLGCLVTGIPADTYCLSLSLLLAFAMLYPEVQVLLFFVIPVRVKYFGLFAAAMWLFSFLTAGWLYKVSYLLSMLGFVLFFGPQALRSVRAWIRREQWKRKNRR
>NZ_LR699017.1|WP_158395581.1|1526110_1527070_-|hypothetical-protein
MMIDRLAGNAALKDSVRLMLGSSRLTHSVLLVGETGLGAGYAARCVAADYLYPAGGAPAEALLRGECCRAVGKAGDRDSGRIETGVVREAISVTGMGSGGRYLVSQVKAMRTEIFNTSLSAEGRAVLLYHVERMNEESANALLKVMEEPPEGVLFLLTADSLAGVLPTIRSRCISFAVAPVSPEECAQWCIGQGVDKKQARLYSELFDGHIGTVLAAAQDDARREQVEKALTLAKAAAAHDSYAAAVLLAGYEKDKAAAAALLGDFRAVAAAGLRGCTSTPLTGDAARRALSLADAAIQRLAAQVNPKITLSVLAAKLG
>NZ_LR699017.1|WP_158395579.1|1524771_1526061_+|D-alanyl-D-alanine-carboxypeptidase
MNRPTFLRRSTALLLTLVLMVCAALPGFAAYQMPIQTASDTESVYLFNLDTGKPILRQNSDQQRYIASLTKMMTALLFLESGKDMNAEITIPTSLTQEFKDIQNANGSTMNLRIGETVRRIDLLYGLLVASANDAASVIASDVSGGDLTAFVAQMNARAKELGCTDTTFSCVHGLYDYGNVSTAEDLAKIAAACYANETYMQAANTLTYTLPATNLHQNERSIKSTNLMLDPEYAYHRDYVRGMKTGFTTLAGRCFVTFAQQDGHTYGLVVLGSDMNNIYRECAEILDWAFSSFSDRQLVDTETVLTTIPLTKCRTEEAVELYAAGDLSGYGHADDEVTFEFSVPESTSATVKEGTVLGTATVYLDGYEMGTVDLVTHKEYVSDFRTDTKTTLLLMAALIGILIVLGFLTMVAGGGSLNLRRRSRSRRR
>NZ_LR699017.1|WP_158395577.1|1523784_1524744_+|D-alanyl-D-alanine-carboxypeptidase
MQFYPFARRLLALALTAAFMTTAALSGFAVYAMPIQAAYPQESIYLFDADTGEALVEQNPDLPRCVASLTKMMTALLVLESGTDLNASITIPASLTPELQSIRANRGHTIGLQAGETVRRIDMMYAMLLPSANDAASVLAVDTSGSLAAFAAQMNVRASQLGCTATHFTCPHGLYDGGNYSTARDMAKIALACYADPTYRQIADTMSYKLPATNVHPARTVTTTNKLLQPGSGYYRSYAHGMKTGFTTQAGRCFVTFAQQDGHTYGLVILGSNSQNIFREAAELFDWAFTSPELHPAPAEPEVEPEKHGLSAFWHKVFG
>NZ_LR699017.1|WP_158395575.1|1523154_1523679_-|gamma-carbonic-anhydrase-family-protein
MMLSFGGKMPRDEGAVFVAANATVLGDVTLDRGVNIWYGAVLRADEGALILGENSNVQDNAVLHCDPGGQVVLGKNVTVGHSAIVHGCTVGDNSLIGMHATILNHAVVGRNCIIGAGALVPEGMVIPDNSVAVGVPAQVIKTIRDDQLAHNIENAKAYVEMGRQHAALGSHAEK
>NZ_LR699017.1|WP_149794758.1|1531722_1532664_-|stage-0-sporulation-family-protein
MKKVISVRFKDNGKTYYFDPADTPIKTGDYVIVETARGVECGEVVQGVKEIADSAVPKALKPITRMADSVDVRRMRQNREDEKRAYHTCQECIARHGLEMKLVEAEYTLDRSKIMFYFTADGRVDFRELVKDLAGIFHTRIELRQIGVRDESKMIGGLGICGQPFCCSRFLKDFQPVSIKMAKEQGLSLNPTKISGACGRLMCCLAYEESAYEYLNSIMPMVGSTVRTPDGLGTVLEVNPISGYLRVRCGTEAFAPRYYKVSVCEYISGGKRAPRRPDPDDDYSGVRDPAPVVASANADGTSSCPGCGRKDKK
>NZ_LR699017.1|WP_158395593.1|1533018_1536945_+|efflux-RND-transporter-permease-subunit
MEKFSVKKPFTILVAVIMVLLLGFVSITNLQTNLLPDISTPYLMVVTVYPGASPERVESEVSDVMENALGTVSGVESITATSAENYSLLLMKFAEGTDMNSAMVKTSNKVDQTATSLPSTCLTPSIIEYSLNMNAFMTVAVSREGSDVYDLSDFVDNTLVPYVGRTSGVSSVSANGLIEKMVQVQLNQDKIDEVNARLLELIDTQLADARAQLDAAEAQIAEGRAEYEKQLKNFGNTVSDTVMAEMGTEVADAVTVVRDQAQALLNSVNQLIGVVNEPEIRQALIDVRDGLQRVVDQFNQTGMRDIDSLIEIVGELRDITDKLTAALQELQGRLGTSDGTVSDLADELEVSNSLSTIYKTLDEVIKAMDNVPGLMNQFSVALGSYSSQQLSAYMRFTEAREMLKDYENQLEDAKQLYEESKEKALASADVAKQLDIKTLAQLIYAQNFSMPAGYVADKSGESWLLKVGEEYDSVSDIEGALLLHVDGFGDVRLSDVADVAVIDNAEASYTRLNGERAVVLKIFRNTNSSASSVSDGCLNAFKELQAQYSDLHVVVLSNQGNYITIIVNSIISSMLVGAALAIIVLAIFLKDIKPTLVVGVSIPLSVLFAVVLMYFTGLDMNIMTLAGLSLGVGMLVDNSVVVIENIYRLRGRGVPAARAAVQGARQVGMSVVASTLTSVCVFLPVVFASGTVRSLLQPMSMCIGYCLMASLIVAITVVPAAASTVLKKAEPKRLVWFEKIQDKYAHSLEWCLQHRALPLLAAVVLLAFCGWKVFSMGVVLLPEISSNEATIALSTDDGLTKEESYGVAGQVVEAVMAVDGVEEVGVTTDTTVAGIDIGQLGLPSAITDLLSAANSYGSYQFNVMLDESLSSTRIAAVEQALNDAVSGVENCTGTVEISGMQDLTSQLSSGLSVKIYGPDADTITALGDKVVQMVNDTEGFANAATGLGQGDATINLDIDRDKVRAYGLTVAQVYQQIAAKLTTTTTAETPVTVDGSTMKVQISDNLDPMTKENMMDMTFTTSVMDATGTTTTGTCTLGDIASWTTGTAPDSITSENQTRYITVTADTLDGYNTTVQSRVLQKTLDAFALTDEMPEGCSFSLGGESSTVNLMVDEMVQWMALALPFVYLVMVAQFQSLLSPFIVLFTVPLAFTGGLLGMLVTGQQLTMISLMGFIVLMGTVVNNGIVFVDYANQLRLGGLERRAALVATGKTRMRPILMTTLTTVLAMLQMVFSNDMASQLMSGMAIVIICGLSYATLMTLYIVPILYDILFKKPPLVVDVGDDGMDDIPDDAAEYIAQSNAAEAQPEA
>NZ_LR699017.1|WP_158395595.1|1537154_1538228_+|galactose-mutarotase
MAQFRSKPFGVTKNGDKVDEYIISNPGGLEISVLNYGCVIKNLFVPTKTGPVDVVVGHDTLADYEADFNSSGSTCCGAFVGRYANRIENAEFSLSGKTYKLEANNGKNHLHGTFPRKIYDVKMFGDTLLMETESPAGEDGFPGNLKVSVRYILTPDNTLRMDYRVSTDEDTIINLTNHTYFNLDGGGNVLGQKLRIYASNYLEGNNETCPTGKILSVDGTPMDFRTGKPLGRDLDTGFYQTTMAGGGFDHCYVLDRPRGASQSLCAWASSDKTGISMKMYTTQPGIQLYTGNFLQDCPSPGKGGVPLEKYGGFALETQHFPCSPSHPEFPTTVLRAGKVFRANTTLRFFTGRQCGRL
>NZ_LR699017.1|WP_158395597.1|1538479_1539505_+|UDP-glucose-4-epimerase-GalE
MAILVSGGAGYIGSHTCIELLNAGYDVVVADNYYNASPVVLDRVKQITGKDFRFYQADMTKHEDVEKIFAECPDITAVIQFAAYKAVGESVSKPIEYYYNNLNCTLVILDVMRKHNCHNFVFSSSATVYGDPASVPITEDFPVGATTNPYGTTKAMTERILTDVCKADPTLNVALLRYFNPIGAHKSGLIGEDPNGIPNNLMPYIAKVAVGKLEKVHVFGNDYPTPDGTGVRDYIHVVDLARGHVCAIKKLETNCGLFICNLGTGKGYSVLDVIHAFEKACGKPIPYVIEARRPGDIAECYADPTKARNELGWVAEYGIEEMCADSWNWQKKNPDGYHTAN
>NZ_LR699017.1|WP_158395599.1|1539715_1542055_+|ferrous-iron-transport-protein-B
MTLKDLNIGETAVVGTVGGEGALRQHFLDMGLIPGEEVTLVKFAPMGDPMELSIHGYELTLRLDDASRIGVTLAKAPAAKKAAAESEKPVEHPGLGEGGRYHTKKGENPLPDGTTLTFALAGNQNCGKTTLFNQLTGSNQHVGNFPGVTVDRKSGAIRNNPNTEVTDLPGIYSMSPYTSEEIVTRQFIIGEKPTGIINIVDATNIERNLYLTMQLMELDTPMVLALNMMDEMRGNGGTVRINKMEAMLGIPVVPISAAKNEGVDELVDHALHVAKYQERPGRMDFCSEEDHGGAVHRCIHGIIHLIEDHAVAAGIPVRFAATKLVEGDQRIEAALKLDQNEKEMIEHIIVQMEQERGLDRAAAIADMRFHFIHQLVEQTVVKPRQSKEQLRSAQIDRFLTGRYTAIPAFVGIMALVFYLTFGVIGLALQNLLEVGIDALTAAVDSTLTAWNVNEAVHSLVIDGIFTGVGSVLSFLPIIVTLFFFLSLLEDTGYMARVAFVMDKLLRRIGLSGRSIVPMLIGFGCTVPGVMASRTLPSERDRKMTILLTPFMSCSAKLPIYSLFAAAFFPEHAALVMVSLYFLGIAVGILMAILLKSSVFKGEAVPFVMELPNYRLPGLKNVVQLLWEKARDFLQRAFTVIFVATIIIWFLQSFDLRLSLTADPQQSILAWLASGIAPLFAPLGFADWRVSTALITGFMAKESVVSTLTILYGSSAAFAAALSPAAAAPLLVFCLLYTPCIAAVASVKRELGGKWAFIMVANQCIVAWLAAFGTRLIMML
>NZ_LR699017.1|WP_158395601.1|1542183_1542621_+|winged-helix-turn-helix-transcriptional-regulator
MNTPGIEFGRKTSAAYAALCKPLCQKLHLPQTAFDILMFLANNPGYQTASDVVEVRKLKANLVSVNVDRLVQEGYLVREADPGDRRRTLLRCTEKACSIIEQGRALQEEFGARLLEHTNEAQRKAFFETMDIINKNLNAILEGEA
>NZ_LR699017.1|WP_158395603.1|1542617_1543394_+|sulfite-exporter-TauE/SafE-family-protein
MNILFTILVTFFAGMGAGLGTGFAGMSAAAVISPMLITFLHMDPYMAVGIALSSDVLASAVSAYTYHKNKNLDIKNGLIMMVSVLVFTVVGSWVASLLPSATMGSFSVFMTFLLGIKFIVRPVMTTKETMQGVSAKKRAIQSIVCGILIGFICGFIGAGGGMMMLLILTSVLGYELKTAVGTSVFIMTFTALTGAVSHFAIGGAPDWHVWVLCVGFTLLWARIAAVFANKADAKTLNRATGIILVILGVVVMGFNWLS
>NZ_LR699017.1|WP_158395605.1|1543457_1544282_-|DUF4097-family-beta-strand-repeat-protein
MKKFLLALLTAVTAAAFFCGAAAPVATYSASYDAPAGINAIVVQDNSAAVILQAADIDHIRADYTYTSSYAFESSKLYDFTVAGSTLTVTKTREPNASLIIQSEDTRSCTLTLQVPRQTLANITVSTTNDSITLNGVSAQTASLTTDNGRIEVSNFNGSTLSGTTRNGKITMSGVTSQNVAATIQNSGTLKLENISANVCNAKVQNGSITGSVIGSGSSYGFELAAGGGKIRVSDASDKNFVFFGKDTLQQNADAPNKLNLATKNGDVEVEFVR
>NZ_LR699017.1|WP_158395607.1|1544481_1545777_-|trigger-factor
MKLVSVETPEKSVCKMTFSASAEELEAASNAVYERTRATYTIKGFAKGEADRAQIEADRGEHTFWYDAINDLMDKDVPALYDAAMAEHGFHAVDEPVYDLVSVKKDEGFVATATTALQPELNLTQTTGFKTECVTPEVTDKEIDAVLERRRAMAAELVPHKGPAVKGNIVHIDYEGLLEGKPFNGGTAQNQTLQLGSGRMIPGFEEGILGHKGGEEFDIFVTFPAHYHVKDLAGKPVVFKIKLHDVCVRQLPALNSDFAKKAANVDTMDEFRAQIRQQLHDNKHAAALNRAKDAILTQLAAAAEGELPSVLVESAYQQEMEQIQQQLQMQRLSLDRYLSQIHQTRESFTAAVHTAAEKNTRARMALLQIAQNENLVPTEEDIDKTLSERAERTKKTLEEVKAASNVEAIRRNEGIRRAADYVIEHSTIEEK
>NZ_LR699017.1|WP_158395609.1|1545943_1546627_+|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta
MRLFDVLGPVMIGPSSSHTAGAARIGYTAQKLLGDIPAEADIGLYGSFATTGRGHGTDRALVAGLLGLRPDDPRLPDSFALAEEAGMKFTIHPVELRAAHPNTAVLTLKSKAGRILVLKAASVGGGRIRVTEIDGVPADFGGDSNTLIIHNEDTPGCIAEVTMSLAQRRINIASMQVFRAATGGYAVMVLECDSHIPHVLEQQMAVMPGIRKVTCLNIDEPEECEEG

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR699017_2	2.18|683360|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	683360-683393	34	MG711465	Faecalibacterium phage FP_Brigit, complete genome	33671-33704	0	1.0
NZ_LR699017_2	2.9|682752|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	682752-682786	35	MK415407	Phage FAKO27_000271F, complete genome	3381-3415	1	0.971
NZ_LR699017_2	2.11|682888|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	682888-682922	35	MK415407	Phage FAKO27_000271F, complete genome	1898-1932	1	0.971
NZ_LR699017_2	2.38|684702|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684702-684735	34	NC_047910	Faecalibacterium phage FP_Epona, complete genome	31533-31566	1	0.971
NZ_LR699017_2	2.40|684836|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684836-684870	35	NC_047914	Faecalibacterium phage FP_Taranis, complete genome	5859-5893	1	0.971
NZ_LR699017_2	2.27|683964|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	683964-683997	34	NC_047914	Faecalibacterium phage FP_Taranis, complete genome	47552-47585	2	0.941
NZ_LR699017_2	2.23|683699|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	683699-683731	33	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	120544-120576	6	0.818
NZ_LR699017_5	5.7|1072836|34|NZ_LR699017|CRISPRCasFinder,CRT	1072836-1072869	34	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	170679-170712	6	0.824
NZ_LR699017_2	2.33|684365|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684365-684398	34	MF351863	Synechococcus phage Bellamy, complete genome	54087-54120	7	0.794
NZ_LR699017_5	5.1|1072574|32|NZ_LR699017|PILER-CR	1072574-1072605	32	MN694241	Marine virus AFVG_250M570, complete genome	34251-34282	8	0.75
NZ_LR699017_2	2.27|683964|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	683964-683997	34	NZ_CP034087	Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence	308505-308538	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	AF083977	Bacteriophage Mu, complete genome	36109-36142	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	V01463	Bacteriophage Mu genome right end encoding the genes gin and mom	503-536	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	NC_013594	Escherichia phage D108, complete genome	36147-36180	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	KP010268	Enterobacteria phage SfMu, complete genome	36538-36571	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	LR595867	Escherichia virus Mu_3F6 genome assembly, chromosome: 1	36037-36070	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	MT374852	Yersinia phage vB_YpM_3, complete genome	35921-35954	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	MT374854	Yersinia phage vB_YpM_6, complete genome	2642-2675	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	MT374853	Yersinia phage vB_YpM_5, complete genome	4067-4100	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	MT374856	Yersinia phage vB_YpM_23, complete genome	1091-1124	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	MT591577	Yersinia phage vB_YpM_Tongde, complete genome	1076-1109	9	0.735
NZ_LR699017_2	2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT	685379-685412	34	NC_000929	Enterobacteria phage Mu, complete genome	36109-36142	9	0.735
NZ_LR699017_5	5.3|1072574|33|NZ_LR699017|CRISPRCasFinder,CRT	1072574-1072606	33	MN694241	Marine virus AFVG_250M570, complete genome	34251-34283	9	0.727
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	558891-558924	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	538056-538089	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	500343-500376	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	447325-447358	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	538058-538091	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	387571-387604	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	456737-456770	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	446109-446142	10	0.706
NZ_LR699017_2	2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	684298-684331	34	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	190246-190279	10	0.706
NZ_LR699017_2	2.46|685244|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	685244-685277	34	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	56749-56782	10	0.706
NZ_LR699017_2	2.46|685244|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	685244-685277	34	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	188339-188372	10	0.706
NZ_LR699017_2	2.46|685244|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT	685244-685277	34	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	317644-317677	11	0.676

1. spacer 2.18|683360|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to MG711465 (Faecalibacterium phage FP_Brigit, complete genome) position: , mismatch: 0, identity: 1.0

ccgttcttcccgaaagaaacggcagaccagttgg	CRISPR spacer
ccgttcttcccgaaagaaacggcagaccagttgg	Protospacer
**********************************

2. spacer 2.9|682752|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to MK415407 (Phage FAKO27_000271F, complete genome) position: , mismatch: 1, identity: 0.971

ataagcagcctgcgggtcagggaacagaccgggcg	CRISPR spacer
gtaagcagcctgcgggtcagggaacagaccgggcg	Protospacer
.**********************************

3. spacer 2.11|682888|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to MK415407 (Phage FAKO27_000271F, complete genome) position: , mismatch: 1, identity: 0.971

tcttgtgtctccttcgataacgcccttgcatctgt	CRISPR spacer
ccttgtgtctccttcgataacgcccttgcatctgt	Protospacer
.**********************************

4. spacer 2.38|684702|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NC_047910 (Faecalibacterium phage FP_Epona, complete genome) position: , mismatch: 1, identity: 0.971

tcgtggtggccttgcccatatccagtgctgcttg	CRISPR spacer
tcgtggtggccttgcccatatccagtgccgcttg	Protospacer
****************************.*****

5. spacer 2.40|684836|35|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NC_047914 (Faecalibacterium phage FP_Taranis, complete genome) position: , mismatch: 1, identity: 0.971

atcagaccgaaagcatccaaccagtcgaagaagtc	CRISPR spacer
atcaggccgaaagcatccaaccagtcgaagaagtc	Protospacer
*****.*****************************

6. spacer 2.27|683964|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NC_047914 (Faecalibacterium phage FP_Taranis, complete genome) position: , mismatch: 2, identity: 0.941

ctgctggctcggctcaacgcccagcggcatccca	CRISPR spacer
ttgttggctcggctcaacgcccagcggcatccca	Protospacer
.**.******************************

7. spacer 2.23|683699|33|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 6, identity: 0.818

acctcatagcctttgccaagcgtcgcgtcgcaa	CRISPR spacer
agttcatagcctatgccaagcgtcgcggcacga	Protospacer
* .********* ************** *.*.*

8. spacer 5.7|1072836|34|NZ_LR699017|CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 6, identity: 0.824

gagcaagtgctttctgttcgtcgt--aagtcatcac	CRISPR spacer
gagcaagcgctttcagttcgtcgttcaggtcctc--	Protospacer
*******.****** *********  *.*** **  

9. spacer 2.33|684365|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 7, identity: 0.794

tactctcgtcgtggatgcaatacctacaattttt	CRISPR spacer
tgctgctgtcgtggatgcaatacctacagtctta	Protospacer
*.** ..*********************.*.** 

10. spacer 5.1|1072574|32|NZ_LR699017|PILER-CR matches to MN694241 (Marine virus AFVG_250M570, complete genome) position: , mismatch: 8, identity: 0.75

gcgagagcatagaagatgagctgtccgacctc	CRISPR spacer
tacccaacatagaagatgagctgtccaacctg	Protospacer
     *.*******************.**** 

11. spacer 2.27|683964|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034087 (Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgctggctcggctcaacgcccagcggcatccca	CRISPR spacer
gtgctggttcggctcgacgcccagcgcgcgcgcg	Protospacer
 ******.*******.**********    * *.

12. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to AF083977 (Bacteriophage Mu, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

13. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to V01463 (Bacteriophage Mu genome right end encoding the genes gin and mom) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

14. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to NC_013594 (Escherichia phage D108, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

15. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to KP010268 (Enterobacteria phage SfMu, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

16. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to LR595867 (Escherichia virus Mu_3F6 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

17. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

18. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to MT374854 (Yersinia phage vB_YpM_6, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

19. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to MT374853 (Yersinia phage vB_YpM_5, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

20. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to MT374856 (Yersinia phage vB_YpM_23, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

21. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to MT591577 (Yersinia phage vB_YpM_Tongde, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

22. spacer 2.48|685379|34|NZ_LR699017|CRISPRCasFinder,CRT matches to NC_000929 (Enterobacteria phage Mu, complete genome) position: , mismatch: 9, identity: 0.735

accgcataaccccactggaaaacgccatcacgca	CRISPR spacer
agggcatatccccactggagaacgccaaccagat	Protospacer
*  ***** **********.******* *  *  

23. spacer 5.3|1072574|33|NZ_LR699017|CRISPRCasFinder,CRT matches to MN694241 (Marine virus AFVG_250M570, complete genome) position: , mismatch: 9, identity: 0.727

gcgagagcatagaagatgagctgtccgacctcg	CRISPR spacer
tacccaacatagaagatgagctgtccaacctgt	Protospacer
     *.*******************.****  

24. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

25. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

26. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

27. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

28. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

29. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
gtgcgccaacagtcgctgaattcgccgccccggc	Protospacer
. **  . ..*********** ******.*****

30. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

31. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

32. spacer 2.32|684298|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 10, identity: 0.706

aggctgttgtagtcgctgaatacgccgctccggc	CRISPR spacer
ctgcgccaacagtcgctgaattcgccgccccggc	Protospacer
  **  . ..*********** ******.*****

33. spacer 2.46|685244|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 10, identity: 0.706

cggccagcctgaccctccagacccgccgcagaac	CRISPR spacer
tggccagcctgacgctccaggcccgtcacgtcgt	Protospacer
.************ ******.****.*.*.  ..

34. spacer 2.46|685244|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 10, identity: 0.706

cggccagcctgaccctccagacccgccgcagaac	CRISPR spacer
tggccagcctgacgctccaggcccgtcacgtcgt	Protospacer
.************ ******.****.*.*.  ..

35. spacer 2.46|685244|34|NZ_LR699017|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 11, identity: 0.676

cggccagcctgaccctccagacccgccgcagaac	CRISPR spacer
ggatgagccggaccctccagacccgctgcctccg	Protospacer
 *.. **** ****************.**     

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	733879 : 739759	8	Streptococcus_phage(33.33%)	NA	NA
DBSCAN-SWA_2	1898076 : 1906450	8	Staphylococcus_phage(66.67%)	tRNA	NA
DBSCAN-SWA_3	2339029 : 2346989	8	Prochlorococcus_phage(33.33%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_LR699017|733879:739759|DBSCAN-SWA
CATGAAAGGAGCGACAAGCATACAGGAACGCCTTTGGGAACTCCGCAAGGACAAAGGCTTAAATCTGGAAGAATTATCAGAGCTGACGGGCATTTCCAAATCAGCTCTTGGCAGTTATGAAAAAGAGGATTATAAGGAAATCAATCATGGCAACCTTATCACGCTGGCAGACTTCTATGGGGTTTCCGTTGATTATCTGCTGTGCCGGACAGAGAACCGGGAGCAGATCAACACGCCACTAACAGAGCTGCATTTGAATGATGAGATGGTGGCACTTCTGAAAGGCGGTCGGATTAACAACCGTCTGCTCTGTGAGCTTGCCACTCATAAGGACTTTATCAAGTTTCTTGCGGACATTGAGATTTATGTAGATGGGATTGCCACCATGCAGATTCAAAACCTCAACGCCCTTGTCGATACTGTCCGGCATGAAATCATTGAACGGTATCGCCCCGGCGAAGACGACCCGCATTTGAAAGTGCTGCAAGCCGCCCATATCAGCGATGATGAATATTTCAGCCACATGGTTCTTGATGACCTCAATCTCATTATCCGGGATATTCGGGAAGCCCACAAAAAGGACAGCGAGAGTGCGCCCCAGACCACCGTTGCCGATGAATTGAAAGAAAATTTGGAAGCGGTTGAAAATTTCAAGGGCAGTCGGGATGAAAAGCTGGTTGTCCTTTACTGCAAGCAGCTCGGCATCAACTATAAAAATCTGTCAGACGAAGAATTTCGCTGGCTCATTCGGATTCTACAAAAATCAAAGAAAACAGGAACTCCTATCAGTCAAAGGAAAAAACGGTAAAGAAAAACCGCTGTTGCATGGTTGTGTTTGCTTCCATGTAGCAGCGGTTGGTGCTATACTTATTCAGTTAAAATTTCAAAGCGATAAAGTGGAATTTATCTTAGAAATTACAGCAATGTTATTTTGATAAACTTTCAAGAATTGAAATATCATGCTTATCTTTATCTCTTAATTCATAACCTGAATGGAAAACTCTTTGGCCTTTTAAGGATATACAAGGAATTGTTTTTCCTTCAAAAAAAGCACTACCAAAGTAATCTTTTTCAAACTCATACCAGCCACCCTCTAAATCAGCTTGTTTTGAAGTTCCGTCCTCATTTAAAACGAACGGGTGAATGTCTAAGTAACCAAGTTCATCACTATATAACTCTATTCTAACCGGTTTCCAGTCTGTATCAATTTTATAGCCCAGATTCAAAAGCACATTTAACAATTTTTCCGTATGTTGAGCATCAAAATTTATATCTATATCTCTATGAATTCTTGTTTGTTTACCAGCTAAAATATCTACACCCCATCCGCCATCCAACCAGTATGTAATTCCAGTATTTTCGAATAATTCTATTACTTTCATTAAATCTTCTTTTGTTGTTATTTCTTTTCTACCCATACAAAGTCTCCTTTACAACTTCTAATTTGTAATAATCATTCTACCATACCGTTATGAATAAATCATCTCATGTAAAACAATTTCTTCTGCCCGGTTGTGAATGTTATTGCAACGCTGCACCCATTCCATTTGACGGGTACGCTTCAATTCCTCGGTCACGCCCTCGGCAGCTTTCATCTGCTCCATGATGGTGTCTAACCGTTTCTGTGCCTGTTCGTTCAGGTCTGCAAGATATGTCCACAATTCCCCGGTCAGGGTCAATGTGTGTAATCTGGCTGGGCAGACTTCTCTTAAATATTCCCGGTGCATCCGTCCGTACTTTCCGATGGGGCGGTGTTCCTCCGGCAACTTCAAGTCCGGGATGTAGTAATCTCCAACAAGGATATAATCAATTCCGTTTTCTTTTATTCTTGGTTTCAATTCGCTCATGTTCCTTACCTCCTGTGGAAGCAGGCTCGTCTGGTACTAACTCAATCACATCGGTAATCTCACAATTCAGCGTTTCGCAGATACGGGCTAATGTATCCATGCTGATGTGCTTTCCCTCTTTGCTCATGTTGGCAATCATATTTGTTGTCATACCAGCGGCAAGCCTTAAATCCTCTTTTCTCATATCACGCTCTAACAGTGTGTGCCAGAGTGGTTTATAGCTGATGTGCATATTGTTTTCCTGCCTTTCTATCCATACCACCGGAGCGGCTGCCCCGGCAGGAACTTTTCTCTTATTATAGCACCAATCTTGTGAAATCACAATTTATTCTTGTAGCCTGCCGCTGATACCGTCTGGATTGGCTTTTCCTTTCTTTTTGTTCCCTTTAATTAGCCATGAACTGCTTCATGCCCTGGCTCTTTGCTTATGTGTGATAAAGAAGTAATAGAAGTGTAAAAATTTTGCCTTTCCTATCCGATACTCAGCTCTGGTATCGAATAGGGCGGGCGGTCATTCGGGCAAGTCCACTTTGCCGACGAAAGAATAGTAAATCTCAATATCCTGTCTGCGTGTGCCGTTTTCATCGTAGCTGCACTCATGCACAACGATTTTCTCTACAAACTCACGCAAGAGGGTGTGGGTCAGTTCTTCAAAGTTCATATGCTTGCGGACAATGTTCATAAACTTTTCTGCGTTTACGGTAGCTTCCTGTGCTTTGGAAAGCTCCGCCTGTATTCTGGCAACACGCTCTTTCAATTCCTGCTGTTCGGCTTCATAGTCTGCCGAAAGCTCCGTGAAACGCTCGTCAGAAATGCGACCGCTTACGCTGTCCTCATACAGCCGCTTGAAAATAGCGGAAAGTTCACCGATACGCTTTTCGGCAGCTTCCAGTTCCTTTTTCTTGGCGGCGTTCCGGCGTTTGCCGCCGTCCTCGTTCTGCTCGATCAGCAGCTTCATAAACCGGGCTTCATGCTTTGCCGCATAGCTCGTCACTTTCCGTAGATTGGAGAGAACGCCTGCAGTCAAAAGGTCGGTGCGGATAAAATGTGCGGTGCAGTCATGGGTGCGCTTCTTGTAGTTCCCGCAGATATAGCAGTCCTGTTTCCGCTTATCGGTCTGGTAACGCTGCTGATACATGACGCTGCCGCAGTCCGCGCAAAAGAGCATACCAGAGAACAAGCCCACTTCATCATAGCGGTTCGGACGCTTGCGCTGTTTGCGTAATTCCTGCACACGCTCCCATGTCTGGGTGTCGATGATAGGCTCATGGTGGTTCTCGAAAATTGCCTGTTTCTCAATGGGATTTTCTATGCTGTGCTTGGTCTTGTAGGACGGTTTCTCCGTCTTGAAGTTCACCAAACAGCCCATGTACTCCCGGTTTTCAAGGATATGCACCACGGTATTTGTCGCCCATTTGCACTCATAGCCGGGGTGATAGCGGCGTGTGCTGCCCGTCCTGCGGTATTCCAGCGTTCCCGGCGTTGGGATTTCCTGCTCGGTCAGCATACGGGCTATCTTGGTCGGACCGTTCCCGGCAAGGCACAGACGGTATATCTGCTTGACCACGGGTGCGGCTTCCTCGTCAATGATGAAGTTTTCGTCCTCGTCCATGAGGTAGCCGTACACGGGTTTGCTCGTAACAGGCTTGCCGCTCATGCCTTTTGACCGTTTTACAGCTTTGATTTTCTTACTCGTATCTCTCACCAGCCATTCGTTGAAAATGTTCCGCAGAGGGGCAAAATCATTATCGCCCTGTGCGCTGTCCACTCCATCGTTAATTGCGATAAAGCGGACGCCTTTTTGTGGGAAAATCATCTCGGTATACATTCCCACCTGCAGGTAGTTTCGCCCTAACCGTGACATATCCTTTACGATAACGGTAGCCACTTTCCCGGCTTCAATGTCCGCAAGCATGGATTGAAAACCCGGTCTTTGGAAGTTCGCACCAGAATAGCCATCGTCCGTGTACCAACGCAGATTGGAAAAACCGTTCTGCTTTGCGTAGGTTTCAAGAATACGCTTCTGGTTGGAAATGGAATTGCTTTCGCCTTGCAGCTCGTCCTCATGGGATAGTCTTGGATAAAGGGCAGTGATTTTCTGGGTGGTCTGTCTTAACATAAAATCCTCCGTTTCCGACAGCCAGCCCCACTATTCCGTATTTCGATTATACCACATGGGGCTGCTGTCTGTATAGCGGCTTCTGCTTCTTTACCGCCCGGTAAAATGACGATTTTTCTGTGCGGCTTGTAGCGTTAGGGCGAAAGCTGGGCTTTGTGTCCTGCGGCTGCTTCCGCCTCCAGCACTTTCATCATCTTATCGGCTGCGGTGTCGGTGGTATCTTTTTTGAAAAAGCCGGAAACGACAAGGACGGTGTTGCCCATGCGGATCTCTGTCACACAGTCCGGGCGGCGTTCCGGGGTGGTATTCTGCTTGTTCTCTGCCATAGGCAACTCCTTTCATTTCATCAATTCTTTTAGTCTGTTCAGCTTGGCTTGCGCCGTTTCACGGCGGAAGTTTTCTCCCGTAAAGAGGATAGGGGCGCACATTTCCAAAAGGCGGTCATAAATCCGGGCATGGGCGGTGTCCAGCGGATTTTGCAGGCTGTCCAATGTCAGATTGGTGGTAACGATTAAGGGCTTGCGGCTGCGGTAGCGGCTGTCAATCACATTGTAGACCTGTTCTAAACCGTACTCTGTGCCGCGCTCCATTCCAAAATCATCAATGATAAGCAGAGAAAAACGGCAAAGACGCTCGATATACTCGTTGCGCCCCTCAAAGCTGGCGGTCAGGTCATTCAAAATCGCAGAGAAGTTCGTCATGCGGACAGCGACTTCCTGCTCCATGAGGGCATTAGCGATACACCCGGCAAAATAGCTCTTTCCTGTGCCGACCTTGCCCCATAGCAGATAGCCGATATTTTCCTCGCGCATGATTTCCCAATGCTCCACATAGAAGTGTGCAATCTCCATTTGCGGGCATTTCCTGTTGTCGTTGGCGAAAGTCCATTCCTGCATGGTAGGATTGGTAAATCCCCGGCGTTTCAAGTCCTCCACGGTGTCAAGGTGCTTTCTGCGCTGTTCGGCGGCTTCACGCTCCAAACGCTGGGCTTTCTGGCAGTCACATTCTGCCGGGTGGCGGTCACGCCCAAACAGGGCGGCTTGCTTTTCCGGGAAGTAGGCTTCTTTCGGAGTGTGACACTTGCCGCAGTAAAGCAGTCCGTCCTCGCCCGTGTAGTCCTCCGGCTGTGGGGTAACAGCCGCCATATTCAAAACTCGTTCTGTAAACAGATTACTCATAAGCTCTCGCCCTCCTTGCAGGTGTATTCGGGTATGCCCTTTTTCGGGGCAGCCTTTGCGGTATCGTCTGCCGCCCATCTGCGGATAGTGGCGGCGTGGTTTTTATATTTCTTGCCCGTGGACGCGATATAGCCGGAAAGCCGCTCAATGTAGTACGCCCATTTTTCGGGCAGCTCCGCTTGCAGTTCGGAAAGCTCCGTATCAGTCAGAAATACATTCTCATATCTGCCATAGCTGCGGGCGAGGGCTTGTCCCTTTAACTCTCCCTCTTTTTCTAACTCTATATCTATCTCTTTCTTTATCTCTATCTCTGGTGGACGAATGTTGGACAAATGTCCGCCATTTGTCCGCGGCGGCAAAAGTGCCTTATTTTCAAGCCTTGCGGCGCGTTTCCGTTCCGCTTCGGTAGAGGATTGACCGATCATCAGCTCGATGTCGGTCATATAAAGCAGCCCGCAGTCAAGCTGCTCCACAAGCCCTAACTGCTGGAAGATGGCTAATGCCCGTTCCACCGTCCCGATTTGGTGACGGGTCAGCGTGGCTATCATCTGGGCGGTATAGGGGATATGCTCGTCAAGCTGCAATCTGCCGCCATTTTTCAGCGATTTTAAGTACAGCTTCAAGAGGATATTGGAATACAAAATCCCGTCTTTCATGTCCTCCAACAGCACAATGGAATCGCTGTCGAAGAAGTTTTCTTTCAGTTTGAGGTAGTAATATTTGCGGTTATCTGCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_LR699017|733879:739759|735684_735957_-|WP_002584334.1|DBSCAN-SWA
MHISYKPLWHTLLERDMRKEDLRLAAGMTTNMIANMSKEGKHISMDTLARICETLNCEITDVIELVPDEPASTGGKEHERIETKNKRKRN
>NZ_LR699017|733879:739759|737978_738170_-|WP_005946147.1|DBSCAN-SWA
MAENKQNTTPERRPDCVTEIRMGNTVLVVSGFFKKDTTDTAADKMMKVLEAEAAAGHKAQLSP
>NZ_LR699017|733879:739759|735347_735725_-|WP_002584333.1|DBSCAN-SWA
MSELKPRIKENGIDYILVGDYYIPDLKLPEEHRPIGKYGRMHREYLREVCPARLHTLTLTGELWTYLADLNEQAQKRLDTIMEQMKAAEGVTEELKRTRQMEWVQRCNNIHNRAEEIVLHEMIYS
>NZ_LR699017|733879:739759|734804_735296_-|WP_009266803.1|DBSCAN-SWA
MGRKEITTKEDLMKVIELFENTGITYWLDGGWGVDILAGKQTRIHRDIDINFDAQHTEKLLNVLLNLGYKIDTDWKPVRIELYSDELGYLDIHPFVLNEDGTSKQADLEGGWYEFEKDYFGSAFFEGKTIPCISLKGQRVFHSGYELRDKDKHDISILESLSK
>NZ_LR699017|733879:739759|738182_739022_-|WP_112091007.1|DBSCAN-SWA
MSNLFTERVLNMAAVTPQPEDYTGEDGLLYCGKCHTPKEAYFPEKQAALFGRDRHPAECDCQKAQRLEREAAEQRRKHLDTVEDLKRRGFTNPTMQEWTFANDNRKCPQMEIAHFYVEHWEIMREENIGYLLWGKVGTGKSYFAGCIANALMEQEVAVRMTNFSAILNDLTASFEGRNEYIERLCRFSLLIIDDFGMERGTEYGLEQVYNVIDSRYRSRKPLIVTTNLTLDSLQNPLDTAHARIYDRLLEMCAPILFTGENFRRETAQAKLNRLKELMK
>NZ_LR699017|733879:739759|736236_737844_-|WP_005933734.1|DBSCAN-SWA
MLRQTTQKITALYPRLSHEDELQGESNSISNQKRILETYAKQNGFSNLRWYTDDGYSGANFQRPGFQSMLADIEAGKVATVIVKDMSRLGRNYLQVGMYTEMIFPQKGVRFIAINDGVDSAQGDNDFAPLRNIFNEWLVRDTSKKIKAVKRSKGMSGKPVTSKPVYGYLMDEDENFIIDEEAAPVVKQIYRLCLAGNGPTKIARMLTEQEIPTPGTLEYRRTGSTRRYHPGYECKWATNTVVHILENREYMGCLVNFKTEKPSYKTKHSIENPIEKQAIFENHHEPIIDTQTWERVQELRKQRKRPNRYDEVGLFSGMLFCADCGSVMYQQRYQTDKRKQDCYICGNYKKRTHDCTAHFIRTDLLTAGVLSNLRKVTSYAAKHEARFMKLLIEQNEDGGKRRNAAKKKELEAAEKRIGELSAIFKRLYEDSVSGRISDERFTELSADYEAEQQELKERVARIQAELSKAQEATVNAEKFMNIVRKHMNFEELTHTLLREFVEKIVVHECSYDENGTRRQDIEIYYSFVGKVDLPE
>NZ_LR699017|733879:739759|739018_739759_-|WP_156067134.1|DBSCAN-SWA
MADNRKYYYLKLKENFFDSDSIVLLEDMKDGILYSNILLKLYLKSLKNGGRLQLDEHIPYTAQMIATLTRHQIGTVERALAIFQQLGLVEQLDCGLLYMTDIELMIGQSSTEAERKRAARLENKALLPPRTNGGHLSNIRPPEIEIKKEIDIELEKEGELKGQALARSYGRYENVFLTDTELSELQAELPEKWAYYIERLSGYIASTGKKYKNHAATIRRWAADDTAKAAPKKGIPEYTCKEGESL
>NZ_LR699017|733879:739759|733879_734686_+|WP_002584331.1|DBSCAN-SWA
MKGATSIQERLWELRKDKGLNLEELSELTGISKSALGSYEKEDYKEINHGNLITLADFYGVSVDYLLCRTENREQINTPLTELHLNDEMVALLKGGRINNRLLCELATHKDFIKFLADIEIYVDGIATMQIQNLNALVDTVRHEIIERYRPGEDDPHLKVLQAAHISDDEYFSHMVLDDLNLIIRDIREAHKKDSESAPQTTVADELKENLEAVENFKGSRDEKLVVLYCKQLGINYKNLSDEEFRWLIRILQKSKKTGTPISQRKKR

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002584331.1|733879_734686_+	helix-turn-helix transcriptional regulator	A0A0A8WIV9	Clostridium_phage	1.4e-07	40.8
WP_009266803.1|734804_735296_-	hypothetical protein	NA	NA	NA	NA
WP_002584333.1|735347_735725_-	TnpV protein	D0R0F4	Streptococcus_phage	5.0e-19	43.4
WP_002584334.1|735684_735957_-	helix-turn-helix transcriptional regulator	A0A2K5B261	Erysipelothrix_phage	2.7e-11	46.4
WP_005933734.1|736236_737844_-	recombinase family protein	C7F8K5	Bacillus_phage	1.2e-24	25.5
WP_005946147.1|737978_738170_-	transposon-encoded TnpW family protein	NA	NA	NA	NA
WP_112091007.1|738182_739022_-	ATP-binding protein	H7BWC4	unidentified_phage	4.3e-55	44.2
WP_156067134.1|739018_739759_-	phage replisome organizer N-terminal domain-containing protein	A0A1S5SFJ6	Streptococcus_phage	3.8e-39	55.6

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_LR699017|1898076:1906450|DBSCAN-SWA
TATGGAAGAACAGAAGAAGAACCCCGCACAGGGCCTGTCTGAGAGTGAGCAGGTGCAGGTGCGCCGCCAGAAGCTGGCAGACCTGCAGGCTGCAGGCCGCGACCCCTTTACCCTGACCAAGTTCCCTCAGGATGCTTACTCTGCTGACCTGAAGGAAGAGTTCAAGGATCTGCCCAACGAGACCGACAGCGGTAAGAAGGTCGCACTGGCCGGCCGTCTGATGTCCAAGCGCGTCATGGGCAAGGCAAGCTTTGCCCATCTGCGCGACGATAAGGGCGACATCCAGCTCTACGTCCGCCGTGACGAGCTGGGCGACGACGCTTACGCTGCTTTCAAGAAGCTGGACGTGGGCGACATCATCGGCGTCAAGGGTGAGGTGTTCCGCACCAAGACCGGTGAGCTGAGCGCCCGTGCCGAGGAGATCACTCTGCTGGCCAAGAGCCTGCGCCCCCTGCCCGAGAAGTTCCACGGCCTGACCGATACCGAGATGCGTTATCGTCAGCGCTATGTTGACCTCATCGCAAACCCCGAGGTCAAGGAGACCTTTGTCAAGCGCAGCAAGATCCTGAAGGAGATTCGTGCTTATCTGGACGAGAAGGGCTTCCTCGAGGTCGATACCCCCATCCTGACCCCCTTCGAGATCGGTGCATCCGCGCGTCCCTTCTACACCCATCACAACACCCTGAACATGGACATGGTGCTCCGCATCGAGACGGAGCTGTACCTGAAGCGCCTCATCGTGGGCGGCATGGACCGCGTCTATGAGGTGGGCCGCATCTTCCGCAATGAGGGCATGGACCCCAAGCACAACCCCGAGTTCACCACCATCGAGCTGTATCAGGCATTCACTGATTTCCACGGTATGATGGACCTGGTGGAGGAGCTGTATAAGCGCCTCGCTCAGAAGATCTGCGGCAGCCTGGTCATCCCCTATCAGGGTAAGCAGATCGACATGGGCCACTGGGAGCGTCTGACCATGATCGAGGCCGTCAAGAAGTATTCCGGCGTTGACTTCAACGACTGGAAGACCGATGAGGACGCCATCGCCGCTGCCAAGGAGCACCATGTGGAGCTGCCCGAGGTTCCCACCAAGGGTGCCATCCTGGCCGAGTTCTTCGACGCCTTCGTCGAGGACAAGCTCATCCAGCCCACCTTCATCTATGATTACCCCGTCGAGATCAGCCCGCTGGCCAAGCGCAAGCCGGATGATCCCGCTTTCACCGAGCGTTTTGAGTACTTCATCGACTGCACCGAGTATGGCAACGCTTTCAGTGAGCTGAACGACCCCATCGACCAGAAGGGCCGCTTCGAGCGTCAGGTCGCCGAGCGTAAGGCCATCGAGCCCGACTGCAAGGCACAGGTCGATTACGACTACGTCAACGCTCTGGAGTACGGTCTGCCTCCCACGGGCGGCCTCGGCTTCGGTGTTGACCGTCTGGTCATGCTGCTGACGGACAGTGCTTCTATCCGTGATGTGCTGCTGTTCCCCACGATGAAGCCGATTGAGCAGTAAAACACAAAATTAAAACGCAGATACGATGAAATTTTGAACAGATTTCAGGCAACATCTGCGGTACTACACCACAACTACACCAATTTTGGGACGTTTTCTCGAAAAGGAGCCTTACAAAGCGGTGTGGTGTAAGAATCGAATAGGTGGATTGGTGTAGTGGCTACACCGAACTCCCAAAACGAAGATACGGCAGCTATGTTGCGAAAAACAACGTAGCTGCCGCTTTTTGTTTCGTATAGAGATTTTATGCTGACAGGCAACTTCTCCTGTGGTTAAATCAATTTGTCGTTGGCAAGTGTCAAACACTCCTGATTTGGCATACGCCAAAATTTACGCCAATTTAGCGCAGTTCCTCAAGCAATGCCGTGCATCCTTCCAGTATATCCTGCCAGGTGGATTCAAAATCTCCCGTGAACCATGGGTCTGCCACTTCACGGGGATGATCCGTATGCGCCATCAGCAGCGAGACTTTATGCTGTGGGTCTCCGCCGACAAGCCGCAGGATGTCGCACAGATTACTTTCGTCCATGCCAATCAGATGATCATACCGTGCATAATCCAGCCGGGTCATCTGCCGGGCGGTCTTGCCGTTGCAGTCGATGCCATGTTCTGCCAGCTTCTGCCGTGCAGGAGGATAGACCGGATTTCCGATTTCCCATGCACTGGTGGCGGCTGATGCGATTTCAAATTGCTCGGATAGTCCTGCCTTGGACGTAAGGTCTTTCATCACATACTCCGCCATCGGGCTTCGGCAGATATTTCCGAGACAAATAAATAAGATCCTGGTCATGCCGGGTCGTTCTCCTTTTGGCTTACAAAAGCATAGCCGCCGTGGGTAGTGCGGATAAAGCTACCGCAGCCGGCCAGCTTCTTTCGCAGATTGGAAACGGTATTTGCCACGACCTTTAAGGTGTCGTCACAGTTTTGTCCCCACACAGCACGGAAAAGCTCTTCTTTTGAGAAGATTTGTCCTTCGTGGGAGGCAAGCATCAGCAGCAAATCGAACTCCAGTCGTGTAAGGGAGACTTTTCTGCCGTTGCACGACACTTCGTGGGTCATTCCATCCAGTGTAAGCCCCGGAAGAACCAACTTCTCCCATGAATCAATGGATATTTGCTCTGCCTCGATGTGCTCTCGTTCCAGAAGCATCCGGATCTTCTGCTCTAATTCCGGGTCAGGCTGTCGGGTCTTTATAACGATCATGGCAAACTCCTGCGTGTATTTTACTCTGCGGCGGTATCCATTTCCCGGAGCAGGTTTACCATCTCGATGGCACTGACTGCACAGTCATAGCCTTTATTACCTGCTTTGGTGCCTGCCCGCTCGATGGCCTGTTCGATGTTTTCGGTGGTCAGAACACCAAAGAGGACGGGAACCCCGCTTTCCAGCGAGACCGTGGCAATGCCTTTGGAAACCTCATTGCATACATAGTCGTAATGGCTGGTAGAACCGCGAATCACGGCACCAAGGCAGATCACAGCATCATACTTTCCGCTTTTTGCCATTTTAGAGGCAACCAGTGGGATTTCAAAAGCACCCGGAACCCATGCAACATGAACATCAGCGTCCTGCACATCGTGCCGGAGCAGGCCATCCATTGCTCCGCTCAGAAGTTTAGACGTGATAAATTCGTTAAAGCGGGCAGCTACGATACCGACCTTGATGTTCTGAGAAACCAGCTTGCCTTCAAATGTTTTCATTTTTAAATACCTCTTTCGTTGTTAATATTCCAGAAGATGTCCCATCCGTGCCTGCTTCGTTTTCAGGTAAAACAGGTCATACGGGGTCGCCGTCATCTGAATGGGTACGCGCTCGGAGATCTCCAGCCCAAACTCGGAGAGCTGATATACTTTGTCCGGGTTATTGGTAAGCAGGCGCAGGCTTTTTACGCCAAGTTCCCGGAGGATCTGTGCGCCGAGATAATACTCCCGTTCATCTCCATGGAACCCCAGAGCGAGATTGGCTTCCAGCGTATCCATGCCCTGCTCCTGAAGTTCATAGGCACGCAGCTTGTTGATCAGACCGATGCCCCGGCCTTCCTGCCGCATATAGAGCAGGATACCCCGGTCTTCTTTTTCGATCTGCGTCATGGCAGCGGCCAGCTGTTGGCCGCAGTCACAACGCAAAGAGCCAAATGTATCTCCTGTCAGGCATTCCGAGTGGACGCGGCACAGAATATCCTTTCCATCGCCAATGTCACCTTTTACCAGTGCAATGTGATGCTCTCCGTTCAGGCGGCTCACAAAACCATAAGCTCTGAAGGTGCCATACTTGGTGGGCAGGTTCACTGCCGTCACCTGATCGACCAGTTTATCGTGACACTTGCGGTACTCCTGTAAATCACGGATGGTGATGAATTTGATCTGGAAACGCTCTGCCAGCTTTGCCAGTTCAGCGGTGCGCATCATCGTGCCATCCTCCCGCATAATCTCGCAGCACAAGCCGCATTCTTTCAGCCCTGCCAGACGGCACAGGTCAACGGTTGCTTCCGTGTGACCGTTGCGCTCCAGTACACCGTTCTTTTTTGCCAGAAGGGGGAACATATGGCCCGGTCTGCGGAAATCTTCTGCTTTTGCGTGGTCGTCCACACAAGCCATCGCCGTAATGGAACGCTCTGCGGCAGAAATGCCCGTAGAAGTAGAAACGTGGTCGATGGACACCGTAAATGCCGTTTCATGGTTGTCGGTGTTATGCTGCACCATCTGCGGAAATTGCAGCTTCTGGACGAAAGCCTCGGACATCGGCATACAGATCAGACCTTTGCCGTGGGTCGCCATAAAGTTGATGTTTTCGGTGGTGGCAAATTCGGCAGCACAGATGAAGTCCCCCTCGTTTTCACGGTCGGGGTCATCCGTTACCAGAATGATTTTTCCTTGCTTCAGATCTTGCAAAGCTTCGGGAATGGTATTGAAGTTCATCGTAAACTCTCCTTAAAAGCCGCAGCGCAGCAGCATTTCTTTTGTGAGCGTGTTTTGCTTCGGTGTTTCTGATGGAAGCAGCCTCTCGATATATTTTCCAACAACATCGGTTTCCAAATTGACAAAATCCCCTTTGTGCCGTTGGTTCAGGTTCGTCTGACGGACGGTGTGCGGTATCGTGGACACGGAAAAGCCCGTAGGTTCCACCGCAGCCACGGTCAGGCTGATACCGTCTATTGTGATAGAGCCTTTTTCAACGACATAGCGAAGGATCGCAGGATCTGCATGAATGGTGTACCAGATAGACGTATCGTCTTTTCGGATATTAGCAATGCGTCCGACGCCATCCACATGGCCTGCTACGATGTGTCCGCCAAAACGTCCGTTGGCCGGCATGGCACGTTCCAGATTGACAGCACTTCCAACGGTGAGCTGTGCAAGTGCAGAGCGGTTCAAGGTCTCGTGCATGACATCCGCAGCAAAGCTATCCGGGAAGAGCTGCCTGACGGTCAGACAGATGCCGTTGACGGCGATGCTGTCACCAATTCTGGTTTCTTCCAGAACCGTTTTTGCACGAACAGTCAGTACGGCAGAATGCTGTCCCCGATTGATGGATTTTATTGTTCCGACTTCTTCCACGATTCCGGTAAACACGGGTACTCCACCTCACTTTCGATTAGGAAATCTTTGCCAAGCTGTTCCAATCGGCTGTTCTTCAGGCGGAATGCAGCATTCGGAAGCGGGACACCTGCACCCTCAATGGGTGCTTTGGCATCCCTTCCTCCGAACAGCTTCGGGGCAATGTAAGCCTGTACCTGCTGCACGATGCCGCTTTCCAGTGCAGACCAGTTCAAGGTTCCGCCGCCTTCCAGCAGAATGCTGTCGATCTGCTCCTGCCCCAGCTGTTCCATCAGTTGCAGAAGATTCACATGACCGCAATGCGCTTCCAGACAAAGGACCCGGCACCCGGCCTGTTGATATGCCGCCTGCTTCTCCGGGTCGCCGCAGCAGGTCGCAAGAATGGTCGGAACCTGTTTGGCGGTCATGACCACCTGTGATTGCAGCGGTGTCCGCAAATGTGTATCACAGATGATCCGGACGGGATCACGGCCACCCTCTATCCGGCAGGTCAGCAGCGGGTCATCTGCTAGGATGGTTCCGACTCCCACCATAATGCCGCGGAATCGGTGTCGCTGCCGTTGAACATGATTCCGGGCAATTTCCCCGGTGATCCATTTGGAAGCGCCTGTGTATGTGGCGATTTTTCCGTCCATCGTCATGGCGTATTTCATGGAAACGAAGGGGCGTTTTGTGATGATATAGTGGAAGAACACCTTGTTCAGCGCATCGCATTCCTCTTGCAGAATATTTTCGGTCACATCTATGCCGTGTGCGCGCAGGATTGCAATTCCTTTTCCAGCCACCAGCGGATTCGGGTCAGCAGAACCCACGACCACCCGGTGAATGCCCGCGTCCAGAATCGCATCCACGCAGGGCGGCTGCTTTCCGTAATGGCAGCACGGCTCCAATGTCACATACAGGGTCGCTCCCTGCGGATCTTCGGTGCAGGATGCCAGCGCATTGCGCTCCGCATGAGCCTGACCGTATCTCTGGTGCCAGCCCTGTCCGATGATCCTGCCCTCTTTTACGACCACGGCACCCACCATCGGGTTGGGAGACGTCCATCCGCAACCCTTTTTTGCAAGCTGTAAAGCCAGACGCATATACTCTTTGTCGTTCATCGTGTCGCCTCCAAAAGAAAAAGCCCTGAACAAAAACGTTCAGGGCAAGCCGAAAAGACACAAGGGACCCTTGTGCAAAAAAGAAAGCTCCAGAATGCAAACGCATCCCAGAGCAGCCTCCACAAGCGCCGAACCGTGCGGGCTCTGCGCTTGGTATCTTCTTTCATCCAGACTGTACTGTCGGCTTCGGAGTTTCACCGAATCATGCCTTACGGCTCGTGGGCTGTACCACCGGTAGGGAATCGCACCCTGCCCTGAAGATTTCTGATTTAATTACAGCGGCATTATAGCACGGCTCCTTTCGGATTGCAAGGGCATTCTGCAAACCGGGACGAAACCGGGACGAAGATGGGTACGAAACTTTTTGACTATTATTGCCTTGTCAAGAGGATAGGCGTCGTCCAGCCCTCTCTTTTTTTGCCAAAGTTTCCCTTGCCTTTTCTTGCACCCTGCCGAAATCAGCGTATTCTCAAAACTTTTTGTTGACACGGCTCGATTTTTGTGGTAATCTATCCCAACAATTGAATATAACATATTTTTACATATTCGTTCAGATCCTGCGGGGCTGAACATCTTGGCTTTCAGCCGTTACATAACCGACTAGCATGACCTTCCAGAAAAAGCGAAGGCAGGGCTGGTCTGTTTTGTGACGGCTTTTTTGTTGCCGTTTTGCCCGTTGGACCTTGAAAACCGCATGACCGTCTGCATGGGATACCCGGCGATGACCCCCCCAGTGGGAGAGCCGGAAAACGCCGCCGGAAGGGGGCAGGAAAGCCATGCAGGGAGAACGGCAGGACGTTGATTTTCCAGTTACGGAGTAAGAAAATGTGGTCAATTTGACCACATCGTTTTCCGTAGCGCCAACGAAAGGATGGAATGCCTATGAGTAATTTTACCCCCGCATGGTTCAAGAAGGGCTTTTTCAACGAATCCCTGTTCTGTGACGATTTTCTGAGCACCCACCAACTGCTTTACTCGAATGGCGCATTTTTCACCCCGGACGGCAGAATGGTGGACCCCATGCCCCTGCGGTGTGAGATCTTCGAGATGATGCGTGAATACGTTGGGGCGAACCTTGCCAAGAAAGTCACCAATGTGGTGGACGTGCTGAAGCTGGCGGCACAGGTGGAGGACTTTCCGCCTGTCACCGACCGCATCGCACTGGCAAACGGCACCCTGTATCTGGACGGTACCTTTCAGGAGGGCAAGCCGGAGATCGTGCGCAACCGCCTGCCTGTCAAGTATGACCCGAAAGCCGTCCAGCCCGTCCACTGGCTGCAGTTTCTGTCCGACCTGCTCTACCCGGAGGACATCCCCACAGTGCAGGAGTTCATCGGGTACTGCCTGATCCCCAGCAACAAGGGCCAGCGCATGATGGTCATCAAGGGCAGCGGCGGTGAAGGTAAGTCGCAAATCGGCGTGGTGCTGTCCCGGCTGTTCGGCTGCAACATGAAGGATGGCAGCATCGGCAAGATCTCGGAGAACCGCTTTGCCCGTGCCGATTTGGAGCACACCCTGCTCTGCGTGGACGATGATATGCGGATGGAAGCCCTGCGTCAGACCAACTATGTCAAGTCCATCGTGACCGCACAGGGGCAGATGGATTTGGAGCGCAAGGGCAAGCAGAGCTATCAGGGCTGGATGTACGCTCGCCTGCTGGCGTTCAGCAACGGCGATTTGCAGGCATTGTATGACCGCTCGGATGGCTTCTACCGCCGCCAGCTCATTCTGACCACCAAGGACAAGCCCCTGTCCCGTGTGGACGACCCGGATATTGCCGAGAAGATGGCGGCAGAAGTCGAGGGCATCCTGCTGTGGGCATTTGAGGGCTTACAGCGGCTGGTGAAGAACGGCTTTCAGTTCACCGAGAGTGACCGTGCCAAGCGCAACCGGGAACTGGTGAAGCGGGACAACAACAATGTGTTTGATTTCCTCGAATCCGAGGGCTACATCCGCCTGAAGGCGGATGCCTGCACCAGCTCGAAAGAGCTGTATGAGGTCTACAGGATGTGGTGCGAGGAGAACAGCCTGAATGCGATCAAGGCCAGAGGGTTCAGCGATGCCCTGATCGCCAACCAGCGCAGGTATAATCTGGAATCCACCAACAACATCGTCAACTCGTCCGGGCGGCGTGTCCGGGGCTTTGTGGGCATCGAAGCCCTTGTGCAGCCCGACCTCACCCCCAATAGCTGGCGGACATGA

Protein sequences of DBSCAN-SWA_2

>NZ_LR699017|1898076:1906450|1898076_1899588_+|WP_015565337.1|tRNA|DBSCAN-SWA
MEEQKKNPAQGLSESEQVQVRRQKLADLQAAGRDPFTLTKFPQDAYSADLKEEFKDLPNETDSGKKVALAGRLMSKRVMGKASFAHLRDDKGDIQLYVRRDELGDDAYAAFKKLDVGDIIGVKGEVFRTKTGELSARAEEITLLAKSLRPLPEKFHGLTDTEMRYRQRYVDLIANPEVKETFVKRSKILKEIRAYLDEKGFLEVDTPILTPFEIGASARPFYTHHNTLNMDMVLRIETELYLKRLIVGGMDRVYEVGRIFRNEGMDPKHNPEFTTIELYQAFTDFHGMMDLVEELYKRLAQKICGSLVIPYQGKQIDMGHWERLTMIEAVKKYSGVDFNDWKTDEDAIAAAKEHHVELPEVPTKGAILAEFFDAFVEDKLIQPTFIYDYPVEISPLAKRKPDDPAFTERFEYFIDCTEYGNAFSELNDPIDQKGRFERQVAERKAIEPDCKAQVDYDYVNALEYGLPPTGGLGFGVDRLVMLLTDSASIRDVLLFPTMKPIEQ
>NZ_LR699017|1898076:1906450|1900811_1901288_-|WP_005920573.1|DBSCAN-SWA
MKTFEGKLVSQNIKVGIVAARFNEFITSKLLSGAMDGLLRHDVQDADVHVAWVPGAFEIPLVASKMAKSGKYDAVICLGAVIRGSTSHYDYVCNEVSKGIATVSLESGVPVLFGVLTTENIEQAIERAGTKAGNKGYDCAVSAIEMVNLLREMDTAAE
>NZ_LR699017|1898076:1906450|1903123_1904248_-|WP_158396063.1|DBSCAN-SWA
MNDKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTEDPQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDVTENILQEECDALNKVFFHYIITKRPFVSMKYAMTMDGKIATYTGASKWITGEIARNHVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRDPVRIICDTHLRTPLQSQVVMTAKQVPTILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPNAAFRLKNSRLEQLGKDFLIESEVEYPCLPESWKKSEQ
>NZ_LR699017|1898076:1906450|1905130_1906450_+|WP_158396065.1|DBSCAN-SWA
MSNFTPAWFKKGFFNESLFCDDFLSTHQLLYSNGAFFTPDGRMVDPMPLRCEIFEMMREYVGANLAKKVTNVVDVLKLAAQVEDFPPVTDRIALANGTLYLDGTFQEGKPEIVRNRLPVKYDPKAVQPVHWLQFLSDLLYPEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSRLFGCNMKDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSYQGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGILLWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKELYEVYRMWCEENSLNAIKARGFSDALIANQRRYNLESTNNIVNSSGRRVRGFVGIEALVQPDLTPNSWRT
>NZ_LR699017|1898076:1906450|1900374_1900791_-|WP_005944121.1|DBSCAN-SWA
MIVIKTRQPDPELEQKIRMLLEREHIEAEQISIDSWEKLVLPGLTLDGMTHEVSCNGRKVSLTRLEFDLLLMLASHEGQIFSKEELFRAVWGQNCDDTLKVVANTVSNLRKKLAGCGSFIRTTHGGYAFVSQKENDPA
>NZ_LR699017|1898076:1906450|1899928_1900378_-|WP_158396059.1|DBSCAN-SWA
MTRILFICLGNICRSPMAEYVMKDLTSKAGLSEQFEIASAATSAWEIGNPVYPPARQKLAEHGIDCNGKTARQMTRLDYARYDHLIGMDESNLCDILRLVGGDPQHKVSLLMAHTDHPREVADPWFTGDFESTWQDILEGCTALLEELR
>NZ_LR699017|1898076:1906450|1902518_1903160_-|WP_174235882.1|DBSCAN-SWA
MFTGIVEEVGTIKSINRGQHSAVLTVRAKTVLEETRIGDSIAVNGICLTVRQLFPDSFAADVMHETLNRSALAQLTVGSAVNLERAMPANGRFGGHIVAGHVDGVGRIANIRKDDTSIWYTIHADPAILRYVVEKGSITIDGISLTVAAVEPTGFSVSTIPHTVRQTNLNQRHKGDFVNLETDVVGKYIERLLPSETPKQNTLTKEMLLRCGF
>NZ_LR699017|1898076:1906450|1901309_1902506_-|WP_158396061.1|DBSCAN-SWA
MNFNTIPEALQDLKQGKIILVTDDPDRENEGDFICAAEFATTENINFMATHGKGLICMPMSEAFVQKLQFPQMVQHNTDNHETAFTVSIDHVSTSTGISAAERSITAMACVDDHAKAEDFRRPGHMFPLLAKKNGVLERNGHTEATVDLCRLAGLKECGLCCEIMREDGTMMRTAELAKLAERFQIKFITIRDLQEYRKCHDKLVDQVTAVNLPTKYGTFRAYGFVSRLNGEHHIALVKGDIGDGKDILCRVHSECLTGDTFGSLRCDCGQQLAAAMTQIEKEDRGILLYMRQEGRGIGLINKLRAYELQEQGMDTLEANLALGFHGDEREYYLGAQILRELGVKSLRLLTNNPDKVYQLSEFGLEISERVPIQMTATPYDLFYLKTKQARMGHLLEY

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015565337.1|1898076_1899588_+|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	3.5e-87	40.9
WP_158396059.1|1899928_1900378_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_005944121.1|1900374_1900791_-	response regulator transcription factor	NA	NA	NA	NA
WP_005920573.1|1900811_1901288_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.7e-45	58.7
WP_158396061.1|1901309_1902506_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.7e-108	49.7
WP_174235882.1|1902518_1903160_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.8e-38	42.7
WP_158396063.1|1903123_1904248_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.4e-45	34.9
WP_158396065.1|1905130_1906450_+	DNA primase	A0A2H4JBE3	uncultured_Caudovirales_phage	2.5e-17	27.3

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NZ_LR699017|2339029:2346989|DBSCAN-SWA
CTTAGTTCATCTTCTTGCCGAAGAACTCCACTTCCTTACGGATGAAGCCCATCAGCTCATCGAACTGGTCGGGGGTCAGGCTCTGCGCGCCGTCGCACTTGGCCTTGGCGGGGTCGTTGTGGACTTCGATCATCAGGCCGTCGGCACCGGCGGCGACAGCGGCCTTGGCCAGCTGAGGCACCATCCATGCGTGGCCGCAGGCGTGGCTGGGGTCTACGATGACGGGCAGGTGGGTCATCTTATGAAGCATGACTACGCCGGCGAGGTCGAGGGTGTTGCGCATACTGGTCTCAAAGGTGCGGATGCCGCGCTCGCAGAGAATGACGTTCTCGTTGCCCTCGGCCATGATGTACTCAGCGCTCATGACGAACTCCTCGAGGGTGTTGGCGAGGCCGCGCTTGAGCAGGACAGGCTTTTTCTGACGGCCTACAGCCTTGAGCAGTTCGAAGTTCTGCATATTGCGGGCACCCACCTGGATGAGGTCTACGTTCTCGAAGAGGGGCAGATGTTCGGTGTTCATGATCTCGGTGACGATGGGAGAGCCGGTGGCACGGCGGGCCAGCTTGAGCAGGTCGAGACCCTCGCTGCGCATCCCCTGGAAGGAGTAGGGGGAAGTGCGGGGCTTGAACGCACCGCCGCGCAGCAGGGAAGCACCGGCTGCCTTGACGCGCTGGGCGCAATAGGTGATCTGCTCCTCGCTCTCGATGCTGCACGGGCCGGCGATGACGGCAAAGCTGCCGCCGCCGATCTTCACGCCTTCCACGTCGATGACGCTGTCGTCCGGGTGGAACTTGCGGTTGGCCTTCTTGTAGGGCTCCGACACGCGGCGGCAGGTCTCGACCACCGGGTTTGCCAGCACCCAGCTCTCGGCGATGGCCTTGGTGTCGCCGATGAGGCCGAGGATGTGGGTGTCGCTGCCCTTGGAGTCGTTGATCTGCAGGCCCATGCCTTCCAGCTCGGTGCAGAATTCATGGATCTTCTCTTTGGGGGCGTCCTGTTTGAGTACGATGATCATGGCGGGTTCTCCTTTTCCTGTTCTGGTACGGCAGGGGAGATGAGGCCGCCTTGCCGTTGATGTTTCAGTATCGTGAACTTCAGTATCGTGAAGTGATTGGGCATGGACATAGCATAGCACTTCAGTTTCATGAAGTCAATAGCCTTTCCGAAATTTTTTGAATTTTGGGAGAGAAAGTGGTAAAATAAAGTAGCCCTCTCAGGCCGCTTCGCGTCCAGCTTCCCCTTTAGGGGAGCTGTCGAGCAGAGCGAGACTGAGAGGGCCATCCTAACAATTATAGAGGTCTTACATATGGGCAAAGAAGCAAAAACCAACGCCATGCGCATTCTGGAGCGGGCCAAGGTGGCCTACACCGCGCATGAATATCCCCACGAAGAGGGCGTGGCCGTGGACGGCGTGACCGTCGCCGCCAGCATCGGTGAAGACCCTGCCTGCGTCTACAAGACGCTGGTGACGCAGGGAAACAGCAAGAACTACTTCGTCTTCGTCATTCCGGTGGCGGCAGAGCTGGATCTGAAAGCCGCCGCCCGCAGCGTGGGCGAAAAGAGCGTAGCGATGATACACGTCGCTGACATCAACAAAGTCACCGGCTATGTCCGGGGCGGCTGCAGCCCGGTGGGCATGAAAAAGCAGTACACCACCGTCTTCGATGAGAGCGTGCTGAGCCAGCCGAAGGTCTACGTTTCCGGCGGGCGCATCGGTACGCAGGTCTGCTGCGCTCCTGCCGACCTCATCAAGGCCGCACGGGCGACTACGGCAAAGATCATCTTCTGAAAGCCTCTCCCAAGGGGAGAACCTTTAAGAGGATATTTATTATAAAAAGATTTTCTGATAAGTCGTACTTAAAAAGAAAAACAGTGTCGAAACTGCACAAAATTTTTGAAAGTTTTTTGACAGCAGGGAACACAAGGGAAAATTTGCCCGAACGCTCTTTGCAAAGGCGTTTTTTTGCCGTATACTGTAGTCAGACGGCGGACGGAAGAGCGCATGAACTCTTTTTCAGCCGGAGAAGAACAGCGTGGACAACGAGGTTTGCGGAGGATGAGCAGAATGCGAAATGAGCTGCTGGGTACCATGTGCCGTCCCGGTACGGGAATGCATCAGGGGCTCCGTGTAACCTGCTGCGGGTCCAGTCTGTCCAGAATGAAATAAAAGGCCGTGGTGTAAGTGCATCACAGCCTTTTTTGTTTTTCGTCGCGGGAGATAGAGAAAGAGAGGTTGGATACAGATGATTCGTAAAGTGGCAGTCATTATGGGTTCGGACAGCGACTGGCCGGTGGTGAAAGGTGCCTGCGCTCAGCTCAAGGCGCTGGACATCCCCTTTGAGGCGCACATCCTGTCGGCCCACCGCACCCCTGCCGAGGCAGCGGAGTTTGCAAAGAATGCCAGGGCCAACGGCTTCGGCGTCATCCTCTGTGCAGCAGGCATGGCGGCCCATCTGGCCGGTGCTTTTGCCGCAAACACCACCCTGCCGGTCATCGGCATCCCGATGAAGGGCGGCGCGATGGACGGCCTGGACGCCCTGCTGGCCACCGTCCAGATGCCCAGCGGCATCCCGGTGGCCACAGTGGCCCTGAACGGCGCGAAGAACGCCGCCTGGCTGGCTGCTGAGATCCTGGCCCTCGGCGATGAGGCACTGGCTGCGAAGCTGGATGCTGAGCGCGTCGCCATGGCCCGGCAGATCGCCGCCAAGGAAGAAAAACTGCAGAAAGAGATCGAGGAACTGTAATGTCTGATTTTGCATACCCGCTTCACGAAGAGTGCGGCGTTTTCGGCATCTATGACCGTGCCGGCACCGAGGACGTGGCCGCTGCCGCCTACTCGGCCCTGTACGCGCTGCAGCATCGCGGACAGGAGAGCTGCGGCATCGCCGTGAACGACGACGGCGTCATCAACGGCCACCGGGACCTCGGCCTTGTCAATGAGGTGTTCACCCCGGCGGTGCTGGGCTCGCTGGCAAAGCCCACGGCCCATATGGCCACCGGCCATGTCCGCTACGCCACCTCCGGCAGCCGCGTCCGGGCCAACGCCCAGCCCATGATCGTCCGCCATGGCCGGGGTACCATGGCCCTCTGCCACAACGGCAATCTGACCAACGCTCTGGAGCTGCGCCGCCAGCTGGAAAACGAGGGTGCCATCTTCCATGGCTCCTCCGATACCGAGGTCATCTGCTACCTCGTCACCCGCAACCGCCTGCGGATGGGCAGCATTGAAATCGCCATCAGCAAGACGATGGACGTCCTCGAAGGTGCTTACAGCCTCGTGGTCATGTCGGCCACTAAGCTTATCGCGGCCCGTGACCCCCGCGGTTATCGCCCTCTCTGCATCGGCACCCTGCCGGGCGGCGGCTACGTCTTTGCCAGCGAGAGCTGCGCATTGGATGCGGTGGGCGCGACCCTGCTGCGGGACGTGGAACCCGGCGAGATCGTCATCACCGACACCAAGACCGGTGAACTGCGCTCCATCAAAGACCACTGCGGCCGTCCCGACCGCCAGATGTGCGTCTTCGAGTTCATCTATTTCGCCCGCCCCGACAGCATCATCGAGGGCAGCTCGGTGCATGAGGCCCGCAAGCAGGCAGGCCGCTTCCTGGCCCAGGAACACCCCGTGGAGGCCGATGTGGTCATCGGTGTGCCGGACTCCGGCCTCGACGCCGCCCTTGGCTACTCTCAGGAGAGCGGCATCCCCTACGGCATCGGCTTTATTAAAAATAAGTACATCGGCCGCACCTTTATCCAGGGCAGCCAGAAGCAGCGCGAGAACAGCGTCCGTATCAAGCTGAACGTCGTGACCAGCACCGTCAAGGGCAAGCGGGTCGTGCTGGTGGATGACTCCATCGTGCGCGGTACCACCTCTGCCCGCATCATCAAGCTGCTGCGGGACGCCGGAGCAAAGGAAGTCCACTTCCGCGTTTCGGCACCCCCCTTCAAATATCCCTGCTACTTTGGCACCGACATCCCCGACCAGAAGCTTCTGGTCGCTACCGGCCGCACGGTGGACCAGATCAACGAGATCATTGGCGCCGACACGCTGGGCTACCTCTCTACGGAGCACGTCGTCCAGCTGGCCCAGAACGCCAACTGCGGCTTCTGCACCGCCTGCTTCACCGGCAAATACGCTGTGAAGCCGGAAGAGGTGCTTTCCACCGATATTCATGAACGCCACCTGAATGACCGTCCCAAGGACGAGAAAAAGTTAGGAGAGTAACAATGGAAAAGAGCTATTCGGAAAGCTATGCAGCCGCAGGTGTGGACATCACCGCCGGCTATCGTTCGGTCGAACTCATGAAGCAGTATGTGGCCCGCACCATGAACGAGCACTGCATTGGTGGTCTGGGCGGCTTCGGTGGCCTGTTTGAGCTGGACTGCACCGGCTACAAGCACCCCGTCCTCATCTCTGGCACCGACGGCGTCGGCACCAAGCTGAAGATCGCCATGATCATGGACAAGCACGACACTATCGGCATCGACTGCGTGGCTATGTGCGTCAACGACGTCATCTGCGCCGGTGCAAAACCGCTGGTCTTCCTCGACTACATCGCCTGCGGCCGCAACATCCCCGAGAAGATCGCCGAGATCGTCAAGGGCGTGTCCGAGGGCTGCGTCCAGGCTGACTGTTCTCTGGTGGGCGGCGAGACCGCTGAGCACCCGGGCATGATGCCGGAGGACGAGTACGATCTGGCCGGTTTCACCGTGGGCGTTGTGGACAAGGAAAAGATCCTCAATAACGAGACCATGAAGCCCGGCGATGTCATCATCGCCCTGCCCTCCACCGGCGTCCATTCCAACGGTTTCTCGCTTGTGCGCAAAATTTTTGACATCGACGGCGATCCAGCCGTCCTGAAAACGGCCCCCGCAGAGCTGGGCGGCAAGACCCTCGGCGAGGCCCTGCTGGCCCCCACCAAGATCTACGTCAAGCCTGTGCTGAAAGTGCTGGAAGAAGTGGATGTCAAGGGCATCTCTCACATCACCGGCGGCGGCTTCTACGAGAATATCCCCCGCAGCCTGAAGAAGGGCTGCTGCGCCCGCATCAAGAAGGAGGATGTCCGCACCCCGGCCCTTTTCCATCTGATGCAGAAGACCGGCAGCATCTCTGAGCACGATATGTTCAACACCTTCAATATGGGCGTCGGCATGGTGCTGACCGTCCCCGCTGAGCAGGCCGACAAGGCACTGGAGATCCTCCATGCCAACGGCGAGCCGGAAGCTTACCGTCTGGGCGTCATCGCAGAAGGTGAGGGTGTCGAGCTGTGCTGAACATTGCAGTGTTAGTGTCCGGCGGCGGCACCAATTTGCAGGCGCTGCTGGACAGCGAGGCCCGGGGCGAGAACCCCAATGGCAAGATCAGGCTTGTCGTGGCCTCCAAACCCGGCGTCTACGCGCTGGAACGCGCCGCCAATGCGGGCGTCGAGGGTGTGGTGGTCCGCCGGAAGGATTACGCTTCCAGTGAGGATTTTGACGCCGCACTGCTGAAAACGCTGAAAGAACATAACATTGACCTTGTGGTTCTGGCGGGCTTTTTGTCCGTGTTAGGCCCCAGCGTCATCGAGGCCTATCCCCGTCGCATCCTGAATATCCACCCCGCCCTCATCCCGTCCTTCTGCGGGCCGGGAATGTACGGCCTGCGTCCCCACGAGGCCGCGCTGGCCCGGGGCTGCAAGGTGACGGGCGCTACCGTCCACTTCGTCAATGAGGAGTGCGACGGCGGGCCTATCCTGCTGCAGAAGGCCGTGGACATCCTACCCGGCGACACCCCCGAGGTGCTGCAGAAGCGTGTAATGGAGCAGGCTGAATGGAAGCTGCTGCCGAAGGCTGTGGCAATGGTGTGCAGCGGAGAGATAAAGTAAAGGACAGCAGGGCGTTGTTTCAGCCTCTCCCTTTGGGAGAGGTGGCACGGTGTCAGCCGTGACGGAGAGGTTTAACAATAGGAGAATTTGACATGGAAAAAATCAACCTGAACGAATATCTGGCCGCGAACGAGTACCCCGGCCGCGGCATCGCGGTGGCAAAGGCTCCGGATGGCCGTCAGGTGTTCATCGGCTATTTCATCATGGGCCGCAGCGAGAACAGCCGCAACCGCGTCTTCGACCCGGTGCCGGAGCGCGGCGGCATCTGCACCATGGCTGCCGACCCGGCCAAGCTCGAGGACCCCAGCCTCATCATCTATAACCCTGTGCTGACCCTCGGCAAGACCCATATCGTCACCAACGGCGACCAGACCGACACCATCTTTGACGAGATGAGCCGGGGCAAGAGCTTCGCCGACGCCCTGCGCACCCGCACCTTTGAGCCGGACGAGCCCAACTACACCCCCCGCATCTCCGCTGTGGTGTACGCAGACGGCAGCTACCAGATGAGCATCCTCAAGTCTGCCGACGGCAACGGCGAGAGCGTCCAGCGCTATTTCTTCGACTACCCCCAGCCCGTGGCCGGTGAAGGCCACTTCATCAGCACCTACAAGCACAACGGCAATCCCATCCCCAGCTTTGAGGGGGAGCCGCTCCGCTTCGCCTGCCCCCGCACCATCGGCGACTTCGCCCACGGTCTGTGGCAGAACCTGAACCCCGACAACAAAGTCAGCCTCTTCGCCCGGGTCATCGACCTGGAGACCGGCGAGAGCGGCGACATGATCTTCAACAAATACGACGCTGTGTGCAGCGACCTCGACGACCCCGAGGAGCCGGAGCTGCTGCCCGAAGAGCTGGAACTGCTCAAAAAGCTCGACGCCGAGGAAGAATAACCTAAGACACAAGGAGGATGCACCAATGAATGAACTCGCACTGAAGTACGGCTGCAACCCCAACCAGAAGCCCAGCCGCATCTATATGGAGGATGGCTCTGACCTGCCCGTCACCGTCCTGAACGGCAAGCCCGGCTACATCAATTTTCTGGATGCTCTGAACTCCATCCAGCTGGTCAAGGAGCTGAAGGAGGCCTGCGGCCTGCCCGCTGCCGCCTCCTTCAAGCATGTCTCCCCGGCCGGCGCAGCTCTCGGTCTGCCTCTGAGCGAGGTGGAGCGGAAGATGTACCACATTGCCCCGGACATGGAGCTTTCGCCGCTGGCCTGCGCTTATGCCCGCGCCCGCGGTGCGGACCGGATGTCCTCCTTCGGCGACTGGATCGCTCTCTCTGACGTCTGCGATGTGCCGACTGCAAAGCTCATCCAGCACGAAGTGTCTGACGGCATCATCGCCCCGGGCTATGAGCCGGAGGCACTGACCATCCTCGCCGGAAAGAAGAAGGGCAATTACAATGTGGTCGCCATCGACCCGGCCTACAAGCCGAACCCCGTGGAGCACAAGCAGGTCTACGGCATCACCTTCGAGCAGGGCCGCAACGAGCTGGCCATCAACGCCGACACCATGCTGACCAACTGGGTCACCGAGAACAAGACCGTGACCGAGGAGCAGAAGCGCGACCTCATCATTGCGCTCATCACCCTGAAATACACCCAGTCCAACAGCGTCTGCTACACCGCAGGCGGCCAGACCATCGGCGTGGGCGCCGGCCAGCAGAGCCGTATCCACTGCACCCGTCTGGCAGGCCAGAAGGCCGACAACTGGCAGCTGCGCCATATGCCGAAGGTGCTGGAGCTGCCCTTCCGTGACGATGTGGCAAAGCCCAACCGCGACAACGCCATTGATGTTTACATCGGCGACACCCCCGAGGACGTCATCGGCGACGACGTCTGGGCCGAGACCTTCACCCGTCAGCCCGAGCCGCTGACCGCTGAGGAAAAGAAAGAGTACCTGAGCCATGTCACCGGCGTCTGCCTCGGTTCGGATGCATTCTTCCCCTTCGGCGACAACATTGAGCGCGCACGCCGTTCCGGCGTGACGGCCATCGTCCAGCCCGGCGGCTCCATCCGCGACCAGCAGGTCATCGACACCTGCAACAAGTACGGCATCGCAATGGCATTCTGCGGCATCCGGCTGTTCCATCACTAA

Protein sequences of DBSCAN-SWA_3

>NZ_LR699017|2339029:2346989|2341271_2341772_+|WP_149794091.1|DBSCAN-SWA
MIRKVAVIMGSDSDWPVVKGACAQLKALDIPFEAHILSAHRTPAEAAEFAKNARANGFGVILCAAGMAAHLAGAFAANTTLPVIGIPMKGGAMDGLDALLATVQMPSGIPVATVALNGAKNAAWLAAEILALGDEALAAKLDAERVAMARQIAAKEEKLQKEIEEL
>NZ_LR699017|2339029:2346989|2341771_2343250_+|WP_158396628.1|DBSCAN-SWA
MSDFAYPLHEECGVFGIYDRAGTEDVAAAAYSALYALQHRGQESCGIAVNDDGVINGHRDLGLVNEVFTPAVLGSLAKPTAHMATGHVRYATSGSRVRANAQPMIVRHGRGTMALCHNGNLTNALELRRQLENEGAIFHGSSDTEVICYLVTRNRLRMGSIEIAISKTMDVLEGAYSLVVMSATKLIAARDPRGYRPLCIGTLPGGGYVFASESCALDAVGATLLRDVEPGEIVITDTKTGELRSIKDHCGRPDRQMCVFEFIYFARPDSIIEGSSVHEARKQAGRFLAQEHPVEADVVIGVPDSGLDAALGYSQESGIPYGIGFIKNKYIGRTFIQGSQKQRENSVRIKLNVVTSTVKGKRVVLVDDSIVRGTTSARIIKLLRDAGAKEVHFRVSAPPFKYPCYFGTDIPDQKLLVATGRTVDQINEIIGADTLGYLSTEHVVQLAQNANCGFCTACFTGKYAVKPEEVLSTDIHERHLNDRPKDEKKLGE
>NZ_LR699017|2339029:2346989|2344981_2345782_+|WP_158396632.1|DBSCAN-SWA
MEKINLNEYLAANEYPGRGIAVAKAPDGRQVFIGYFIMGRSENSRNRVFDPVPERGGICTMAADPAKLEDPSLIIYNPVLTLGKTHIVTNGDQTDTIFDEMSRGKSFADALRTRTFEPDEPNYTPRISAVVYADGSYQMSILKSADGNGESVQRYFFDYPQPVAGEGHFISTYKHNGNPIPSFEGEPLRFACPRTIGDFAHGLWQNLNPDNKVSLFARVIDLETGESGDMIFNKYDAVCSDLDDPEEPELLPEELELLKKLDAEEE
>NZ_LR699017|2339029:2346989|2345807_2346989_+|WP_015563617.1|DBSCAN-SWA
MNELALKYGCNPNQKPSRIYMEDGSDLPVTVLNGKPGYINFLDALNSIQLVKELKEACGLPAAASFKHVSPAGAALGLPLSEVERKMYHIAPDMELSPLACAYARARGADRMSSFGDWIALSDVCDVPTAKLIQHEVSDGIIAPGYEPEALTILAGKKKGNYNVVAIDPAYKPNPVEHKQVYGITFEQGRNELAINADTMLTNWVTENKTVTEEQKRDLIIALITLKYTQSNSVCYTAGGQTIGVGAGQQSRIHCTRLAGQKADNWQLRHMPKVLELPFRDDVAKPNRDNAIDVYIGDTPEDVIGDDVWAETFTRQPEPLTAEEKKEYLSHVTGVCLGSDAFFPFGDNIERARRSGVTAIVQPGGSIRDQQVIDTCNKYGIAMAFCGIRLFHH
>NZ_LR699017|2339029:2346989|2344292_2344889_+|WP_158396630.1|DBSCAN-SWA
MLNIAVLVSGGGTNLQALLDSEARGENPNGKIRLVVASKPGVYALERAANAGVEGVVVRRKDYASSEDFDAALLKTLKEHNIDLVVLAGFLSVLGPSVIEAYPRRILNIHPALIPSFCGPGMYGLRPHEAALARGCKVTGATVHFVNEECDGGPILLQKAVDILPGDTPEVLQKRVMEQAEWKLLPKAVAMVCSGEIK
>NZ_LR699017|2339029:2346989|2339029_2340043_-|WP_149794094.1|DBSCAN-SWA
MIIVLKQDAPKEKIHEFCTELEGMGLQINDSKGSDTHILGLIGDTKAIAESWVLANPVVETCRRVSEPYKKANRKFHPDDSVIDVEGVKIGGGSFAVIAGPCSIESEEQITYCAQRVKAAGASLLRGGAFKPRTSPYSFQGMRSEGLDLLKLARRATGSPIVTEIMNTEHLPLFENVDLIQVGARNMQNFELLKAVGRQKKPVLLKRGLANTLEEFVMSAEYIMAEGNENVILCERGIRTFETSMRNTLDLAGVVMLHKMTHLPVIVDPSHACGHAWMVPQLAKAAVAAGADGLMIEVHNDPAKAKCDGAQSLTPDQFDELMGFIRKEVEFFGKKMN
>NZ_LR699017|2339029:2346989|2340334_2340817_+|WP_158387997.1|tRNA|DBSCAN-SWA
MGKEAKTNAMRILERAKVAYTAHEYPHEEGVAVDGVTVAASIGEDPACVYKTLVTQGNSKNYFVFVIPVAAELDLKAAARSVGEKSVAMIHVADINKVTGYVRGGCSPVGMKKQYTTVFDESVLSQPKVYVSGGRIGTQVCCAPADLIKAARATTAKIIF
>NZ_LR699017|2339029:2346989|2343252_2344299_+|WP_149794089.1|DBSCAN-SWA
MEKSYSESYAAAGVDITAGYRSVELMKQYVARTMNEHCIGGLGGFGGLFELDCTGYKHPVLISGTDGVGTKLKIAMIMDKHDTIGIDCVAMCVNDVICAGAKPLVFLDYIACGRNIPEKIAEIVKGVSEGCVQADCSLVGGETAEHPGMMPEDEYDLAGFTVGVVDKEKILNNETMKPGDVIIALPSTGVHSNGFSLVRKIFDIDGDPAVLKTAPAELGGKTLGEALLAPTKIYVKPVLKVLEEVDVKGISHITGGGFYENIPRSLKKGCCARIKKEDVRTPALFHLMQKTGSISEHDMFNTFNMGVGMVLTVPAEQADKALEILHANGEPEAYRLGVIAEGEGVELC

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149794094.1|2339029_2340043_-	3-deoxy-7-phosphoheptulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.7e-18	30.3
WP_158387997.1|2340334_2340817_+|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_149794091.1|2341271_2341772_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.1e-17	39.0
WP_158396628.1|2341771_2343250_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-57	32.7
WP_149794089.1|2343252_2344299_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.9e-66	43.4
WP_158396630.1|2344292_2344889_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-23	34.6
WP_158396632.1|2344981_2345782_+	IMP cyclohydrolase	NA	NA	NA	NA
WP_015563617.1|2345807_2346989_+	phosphoribosylaminoimidazolecarboxamide formyltransferase	Q58MG4	Prochlorococcus_phage	8.3e-12	50.0