CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_LR699553	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome I	3 crisprs	WYL,cas3,DinG,DEDDh,csa3	0	1	4
NZ_LR699555	Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI	0 crisprs	csa3	0	0	1
NZ_LR699554	Paraburkholderia sp. Msb3 isolate PDMSB31 chromosome II	2 crisprs	csa3,WYL,DinG,cas3,RT	1	1	1
NZ_LR699556	Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pII	0 crisprs	NA	0	0	1
NZ_LR699557	Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pIII	0 crisprs	RT	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR699553_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699553_1

900739-900833

Orphan

Consensus_repeat	Method
CATGCGCAGGAGCCGGCGTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR699553_1

>merge|NZ_LR699553|1|900739-900833|CRISPRCasFinder
CATGCGCAGGAGCCGGCGTTCGCAGCTCAGCCGGTGCATGCACAAGAGCCCGCGTTCGCGCCTCAGCCGGAGCATGCGCAGGAGCCAGCGTTCGC

>NZ_LR699553|1|1|900739-900833|CRISPRCasFinder
CATGCGCAGGAGCCGGCGTTCGC	AGCTCAGCCGGTGCATGCACAAGAGCCCGCGTTCGCGCCTCAGCCGGAG
CATGCGCAGGAGCCAGCGTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699553.1\|WP_165184953.1\|905981_906716_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|226002
NZ_LR699553.1\|WP_165184928.1\|887133_888450_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|225448
NZ_LR699553.1\|WP_165184940.1\|898444_899956_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_LR699553.1\|WP_165184944.1\|901499_901838_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|227001
NZ_LR699553.1\|WP_007175959.1\|888508_889267_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|235711
NZ_LR699553.1\|WP_165184946.1\|902006_903680_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_LR699553.1\|WP_165184955.1\|908094_908457_-\|ATPase	unknown	unknown	gnl\|CDD\|130902
NZ_LR699553.1\|WP_165184933.1\|893799_894192_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368682
NZ_LR699553.1\|WP_165184951.1\|904968_905874_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_LR699553.1\|WP_011487122.1\|896057_897206_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_LR699553.1\|WP_165184957.1\|909013_910888_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|226664
NZ_LR699553.1\|WP_165184959.1\|910939_912004_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_LR699553.1\|WP_028200473.1\|907783_908098_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NZ_LR699553.1\|WP_091796450.1\|900014_900431_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_LR699553.1\|WP_165184948.1\|903853_904840_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176144
NZ_LR699553.1\|WP_165184935.1\|894513_895503_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_LR699553.1\|WP_165184937.1\|895674_896046_-\|cobalamin-biosynthesis-protein-CbiX	unknown	unknown	gnl\|CDD\|239509
NZ_LR699553.1\|WP_007175951.1\|897209_898307_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_LR699553.1\|WP_165184931.1\|889273_892474_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366600
NZ_LR699553.1\|WP_132375720.1\|906891_907350_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|225498

Protein	Function_ID	Function_description	E-value
NZ_LR699553.1\|WP_165184953.1\|905981_906716_-\|SIMPL-domain-containing-protein	gnl\|CDD\|226002	COG3471, COG3471, Predicted periplasmic/secreted protein [Function unknown].	2.8214e-44
NZ_LR699553.1\|WP_165184928.1\|887133_888450_+\|sulfate-adenylyltransferase	gnl\|CDD\|225448	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism].	0
NZ_LR699553.1\|WP_165184940.1\|898444_899956_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_LR699553.1\|WP_165184944.1\|901499_901838_-\|c-type-cytochrome	gnl\|CDD\|227001	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion].	5.30906e-17
NZ_LR699553.1\|WP_007175959.1\|888508_889267_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|235711	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase.	7.10558e-115
NZ_LR699553.1\|WP_165184946.1\|902006_903680_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_LR699553.1\|WP_165184955.1\|908094_908457_-\|ATPase	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	0.00242386
NZ_LR699553.1\|WP_165184933.1\|893799_894192_+\|hypothetical-protein	gnl\|CDD\|368682	pfam05954, Phage_GPD, Phage late control gene D protein (GPD). This family includes a number of phage late control gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences.	1.54892e-28
NZ_LR699553.1\|WP_165184951.1\|904968_905874_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	3.25007e-119
NZ_LR699553.1\|WP_011487122.1\|896057_897206_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	3.00112e-112
NZ_LR699553.1\|WP_165184957.1\|909013_910888_+\|TonB-dependent-receptor	gnl\|CDD\|226664	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism].	3.28082e-163
NZ_LR699553.1\|WP_165184959.1\|910939_912004_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.79414e-66
NZ_LR699553.1\|WP_028200473.1\|907783_908098_-\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	1.35536e-19
NZ_LR699553.1\|WP_091796450.1\|900014_900431_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	6.6585e-56
NZ_LR699553.1\|WP_165184948.1\|903853_904840_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176144	cd08453, PBP2_IlvR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold. The IlvR is an activator of the upstream and divergently transcribed ilvD gene, which encodes dihydroxy acid dehydratase that participates in isoleucine, leucine, and valine biosynthesis. As in the case of other members of the LysR family, the expression of ilvR gene is repressed in the presence of its own gene product. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.82894e-88
NZ_LR699553.1\|WP_165184935.1\|894513_895503_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	4.34163e-53
NZ_LR699553.1\|WP_165184937.1\|895674_896046_-\|cobalamin-biosynthesis-protein-CbiX	gnl\|CDD\|239509	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.	7.21978e-29
NZ_LR699553.1\|WP_007175951.1\|897209_898307_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	4.21868e-128
NZ_LR699553.1\|WP_165184931.1\|889273_892474_-\|hypothetical-protein	gnl\|CDD\|366600	pfam01375, Enterotoxin_a, Heat-labile enterotoxin alpha chain.	8.065e-35
NZ_LR699553.1\|WP_132375720.1\|906891_907350_-\|EVE-domain-containing-protein	gnl\|CDD\|225498	COG2947, COG2947, Uncharacterized conserved protein [Function unknown].	1.74733e-73

>NZ_LR699553.1|WP_091796450.1|900014_900431_+|DNA-polymerase-III-subunit-chi
MTRIDFHSNVGDSLLYACRLIRKAYQAGQPTIVLAEPARLKAFDEQLWTFSPLDFVPHCMAGTPLAAQTPIVLASTLDDVPHHQVLLNLGATVPAQFARFERLLEVVGNAHEELAAGRERYRFYRDRGYALNNYKQGS
>NZ_LR699553.1|WP_165184940.1|898444_899956_+|leucyl-aminopeptidase
MDFSIKACDWTKGSSNGFLTGKSDCIVIGVFESQTLSGAALEIDAATKGLLTRIIKAGDMDGKAGTTLFLHEVSGIGASRVLLVGLGKQDAFNQKAYGDAARAAWRALLSTKIVQVTFTLAQLPILERSADWAVRAAILALRELTYKFTQMKSKPDTSARALKRIVFSVNTGDEKAAKLAAKQGAALANGMDLTRDLGNLPSNVCTPTYLANTAKKLAKDWKLKVEVLGEKQCEALKMGSFLSVTAGSVEPAQFIVLQYQGGAAKAAPVVLVGKGVTFDTGGISLKPGEGMDEMKYDMCGAGSVLGTLRAVAEMGLKINVVGIIPAVENMPSATATKPGDIVTSMKGLTIEVLNTDAEGRLILCDALTYAERFKPAAVIDIATLTGACIIALGHHNSGLFSKDDALAGELLDASREASDPAWRMPLDDEYQDQLKSNFADLANIGGRPAGSVTAACFLSRFTEAYPWAHLDIAGTAWKSGAAKGATGRPVPLLAQFLIDRAAQ
>NZ_LR699553.1|WP_007175951.1|897209_898307_-|LPS-export-ABC-transporter-permease-LptF
MIFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLAIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGWPWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTENGKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVNTPTTTGTPTLTLLRNPTNDNLAEFAWRAGLPLIALNLMLLAIPLAHQNPRRSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLRVRNRPLFTRAMFSRSQGA
>NZ_LR699553.1|WP_011487122.1|896057_897206_-|LPS-export-ABC-transporter-permease-LptG
MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSRFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQSLRSLLKIGIPLVLLTYLIGEVVGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATISNVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYRAKEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLLYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAATPGLVYLVLGLVGLKWVDRH
>NZ_LR699553.1|WP_165184937.1|895674_896046_-|cobalamin-biosynthesis-protein-CbiX
MAMHGIVLFGHGARDVRWREPFERLAGKVRGAASESGPVALAFLELMEPDLPTAVSDLVAQGCEVVTVVPVFFGQGGHVRKDLPLVIEQCQALHPSVLIKCAVAVGEDEAVLDAVAEYCLRQV
>NZ_LR699553.1|WP_165184935.1|894513_895503_+|type-VI-secretion-system-tip-protein-VgrG
MLGLQTGRTFLLTDHPEPTLNAEYLVVSTTIDIHNASGSTGSVGARDEHQLQCVTDFVLQPRDRFFRNRPRKKPRCYAETAIVVGPKDHTTWVDEYGRVKISYLRDLDGPRNTTASCWVRVSSGWQGQSFGSIYVPRSGQEVTVNYHEGDPDKPYIADRMINRLQQPPWKLPANHALSGTRTRDLGGLQANQILADDTPGKLQVRVSSDYAQSRLVLGRNTRIDGNEGRKEERGEGWELATDSWGVARANKGLLVTTETRPGATAPVKDMGETVQRLTPARELHEDLAQLAQQHKAQDARASPRDATQAIRAQNDAFRGGAPTYDDPSP
>NZ_LR699553.1|WP_165184933.1|893799_894192_+|hypothetical-protein
MTISVEFDGKGRSVTGIASYGSAANAGAGVRKISGIISKAELTGADERHLYYRLIVRPTLWLTTRNSRSRIFQNKSVLDITVDVLRDYPVVYDMRACAFKLEDGYLRRDFVRQMWESDFDFLTRLWRECA
>NZ_LR699553.1|WP_165184931.1|889273_892474_-|hypothetical-protein
MDRGGSALKEGAVDSEPIDQRNYPESQGQVHGGLCEGMVREVMRRVDQATGRGVPTTASPTGRMLPLTAVQGMRADAGRSSPARDAMFTRINNFQNNRTALRFQHHTRQAPFTFDRTGSKKRRIERFLDSLHSSLQNPNDMAYIQLALVRGDMRRGHALLIQRGSDNRYSIFDPNNGAFQYADWQHMAHALDGYLNSTFQTRQASGSPPSNVRENQYDVMPFKMQVYSTARQTGKEVDELPPQQGAAGLGPPEADCDDGIYKEHATESSDISLDVLFPQGAAKSGLHSPNESVGGYVLQEVESGRAINLIAATTQLHGSLGNPYGHQNIVYALNVRHERCQTASTTILPNHTRHSGVLHTANAGDLVNDLRIHFSGPYVSEDATRHRNDFAVVDLTLNPRAASGSSREPSRPVIIQRMNTTDDFTSDQYQVYDPNSGVFVYQGFDNLASTMRRIYDTGYSGEGGVHHATTTWYSNDSSIAGTSVPVAERRPPSPVRNVTLDRAEHAGGLEHVNDGAHVPERFNLPPEPADNRPSIQEYVRTHTDDLKKRSTDSQPDAEPRLLFRPSTETPEEVNRRGGFDAEWTPLSEINLQMHNFDVASHQGETDSAGYLGTFALPSVAVIRQQHQSRAGYIYVIAASPNMVDVNGSLGPHALERRDKEYAAMGHIDNTQIVGWWRTEDLHNNPAMKYTPNPHFRWDVYGHLRTAGAQPQLARFPIDSPAWQQPAYRPFATSRQLDGQTSAVIPKEDPNRTQAAFYLNAMMKLDQAAVKQSNGEDYRGPMTIQAYGGGQYILYTDGYDRPYIAKKSYADSYPENNRQFAMGDDGRFHFPKDYNKVLLVGSGGYLYVGPIPQHSWDLNGVFRFSGGRLIHVKDNRYLNVGYGSSPFVANYQNGSWSQWGLKDPAGHTVTPPTINRNSYSLEADAYNRRKLYAFSQDPDSALPAGATHFVTQMELLGFPIDNMQPTVGYLQRYGGVEIIAPELFKENAAWLFKDGYYATATSENELEVRTVSGELIWQATYQGGTRWTWKQAGPVASTGFPISDEIWNGIRAREIGRLNLEDNLAKV
>NZ_LR699553.1|WP_007175959.1|888508_889267_+|uroporphyrinogen-III-C-methyltransferase
MGKVYLIGAGPGAADLITVRGARLLGSADVVLHDALVEPAMLDYAPSHARRIAVGKRCGQLSTAQQFINKQIVDAAREHDVVVRLKGGDPMLFGRADEEMRALEAAGIEYDVVPGITAALASAASLKRSLTLRGVSRSVALATFSRAPGSEEIREQVKADSLVFYMGRDSGVEIARQLIEAGRDIGTPVAIVEACSTERERTLTLTLERLAAGEAVGWVETSQPSLLMIGEAFAARLADAEVRSADGMLVAA
>NZ_LR699553.1|WP_165184928.1|887133_888450_+|sulfate-adenylyltransferase
MSGIHQPEDLGVLRFITAGSVDDGKSTLIGRLLYDSKAVLSDQLSALSRAKNKRTVGDEIDLSLLTDGLEAEREQGITIDVAYRYFATAKRKFIIADTPGHEQYTRNMVTGASTAHAAIILVDATRVTFVDGVAQLLPQTKRHSAIVKLLGLQHAIVAINKMDLVDYSEQRFNEIRDAYVELARQLGLNDVRFVPVSALKGDNIVTASERMPWYAGEPLLDLLEALPVEVPTGQALRFPVQWVARQDGSQADDFRGYMGRVEAGEVKLGDTIVVLPANREATVAEIIAPVPGGTAAVDRAFAGQTVTIRLAEDVDVSRGDTFVLREAAPEPAKKLEADLCWFDDTPLSTQRKYLLKQTTNTVFARIGAIKEVLDVHTLSQATDRKDLTMNDIGRVALTLQKPLVCDVYDSHQGTGAFVLIDEATHHTVAAGMIRAFSA
>NZ_LR699553.1|WP_165184944.1|901499_901838_-|c-type-cytochrome
MKSMSHTALAAAVVLGAALSAGSPAAHAEATGLALAQQENCMSCHSVTRSFMGPALRDVAAKYADREDAANYLKHKILDGSTGVWGVVPMPANTQLTPDQAATLASWVLTLK
>NZ_LR699553.1|WP_165184946.1|902006_903680_-|dihydroxy-acid-dehydratase
MPYNRRSKNITQGVARSPNRSMYYALGYEKADFDKPMIGIANGHSTITPCNAGLQRLADAAVAAIKGADANPQIFGTPTISDGMSMGTEGMKYSLVSREVISDCIETCVQGQWMDGVVVIGGCDKNMPGGMIGMLRTNVPSIYVYGGTIRPGNWKGTDLTIVSSFEAVGEFTAGRMSQEDFEGVEQNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLVDAVKKDLKPRDIVTRKSIENAVAVIMATGGSTNAVLHFLAIAHAAEVEWSIEDFERMRKKVPVICNLKPSGQFVATDLHKAGGIPQVMKILLDAGMLHGDCITITGRTLAEELKDVPARPRADQQVIFPVEKALYKEGHLAILKGNLAVDGAVAKITGLKNPVITGPARVFDDEQSALEAILADRIVAGDVVVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGLITDGRFSGGTWGMVVGHVAPEAFVGGTIAFVQEGDSITIDAHKLLLQLNIDDAELARRRAAWQQPKPRYTRGVLAKYSALALPANKGAVTG
>NZ_LR699553.1|WP_165184948.1|903853_904840_+|LysR-family-transcriptional-regulator
MLPAIPDLRQLRYFVTVAEEKHFGRAAVRLSMTQPPLSQAIRALEETLGVALFARTKRSVELTPVGADLLPEVQRLLASAEGLRPLAQSLARGEAGVLSLAFVSTADYGLLPLLLRDFGVRHPRVRLELTEATSDVQVDELVAGRIDAGLVIAPLPSRHAAQLSWLPIAREPLVIAMSTEMAARVASGSGSRADPGAEWLDTPISLRDVADAPLVIFPRRLAPGFYDIIMDCYGVAGLAPRIGQEAIQMQTIVSLVSAGMGVALVPQSLRNLRRTGVVYRPLSESVPAIETGLVWRTAEVSPVLAGFIEIVRAHAATVEAPQSAAPRV
>NZ_LR699553.1|WP_165184951.1|904968_905874_+|prolipoprotein-diacylglyceryl-transferase
MLIHPNFDPIAIHLGPLAVRWYGLMYLVAFIAAIVVGRLRLRLPYVAAQGWTAKDIDDMLFYGVLGTILGGRLGYVLFYKASFYFAHPLDIFKVWEGGMSFHGGFLGVTLAMVLFAYQRKRSWLQVTDFVAPMVPTGLAAGRLGNFINGELWGRVTDPTAPWAMLFPGAAPDDAAWLATHPQLAAQWHLNEVFAQYHMLPRHPSELYEIALEGVALFFVLFFFSRKPKPMGAISAMFLIGYGLARFTVEFAREPDDFLGLLAMGLSMGQWLSLPMILVGIGMLVWSYRRARREPAQAVSAS
>NZ_LR699553.1|WP_165184953.1|905981_906716_-|SIMPL-domain-containing-protein
MTKNTARALALAFVCAAPAALALTPAMARAQAVAQYQPAGVLSLNAQASAEVPQDVVEITLFYEQEASDPSALTSTLNQRADSALQKAKGVSGVTARTGSFSIYPSTDRDGRISAWRGRTEIVLESHDFAAASKLAGQMASIMQVGNVQFSLSPEAQRAAEQKLTGEAIRSFREQAASSAQAFGYSGYSIREVNVGHNGVMPRPMMMMMSARAMGADAKASAPVPIEGGTSTVTVNVSGSVQMK
>NZ_LR699553.1|WP_132375720.1|906891_907350_-|EVE-domain-containing-protein
MRYWLMKSEPDEASIDHLANAPHRTLPWTGVRNYQARNFMRDMMQVGDGVLFYHSSCPEPGIAGIAEVSSTAYPDPTQFDKKSPYYDAKSSQETPRWVLVDVVFKKKIPLIPLAALREHDELKDMRVLAKGNRLSITPVTEAEWRFITKRLA
>NZ_LR699553.1|WP_028200473.1|907783_908098_-|cell-division-protein-ZapA
MTTKQIEVSILGVPYRLACSPETEGALLEAVARVDAEMSKIRNSSNVRGTDRIAVMAALSLASELLKLQSSVRHGEAFPAEEIRRTMHQMNEQLGTVIQQYSMQ
>NZ_LR699553.1|WP_165184955.1|908094_908457_-|ATPase
MLTELETLSQNIGKLIAISQRHNEARVALEEQLAQSRADVEATRTELAMLREERNALQAERDALSAKIDDAQVRLNAILEKLPRARAHSEPDNQLDLLEPAQHEVAAGAESDATRHGENA
>NZ_LR699553.1|WP_165184957.1|909013_910888_+|TonB-dependent-receptor
MLSPIARAVLLAFASLPIVVHAQAASSSSSSSAADSSATVLSPVVVTAERGPQALADTIPQTALFDQQDIADTTATDLPGLLQLAPGAQISRTGGPGSTTSLFLRGASSTQSLLLIDGVRVDSVGLGSAQLAQIPLDQIDHVEVVNGNVSALYGSGAIGGVVQVFTKEGGDHPPRFNFSLGYGSYHTQTQQAGVNGALDKDGNTTFSISLARSKDDGFSSLNPREAPAANPNANGYLNESISASLRHKFNDRWDAGASYFQSNGNNSYDNAYGVPTDLNNLYSKVRQVSVFANGKLTDWWTTHFIVSEGDDRSVSNTNGVYNGRFDTDNRQYTWQNDFALAAQQKLQVGYEHLDQSLDSDTFAAPDRHVDSGFVGYTGRFGRSQIQANVRRDQYSDFGGANSYYLGYGFDITGHWKVSASYSDSFRAPSFDDLYYPLSGNPSIQPERSHSIEAALQYASNALGVMRLTAFQTRYSNLIDYEQVTPGIYLAENVGHAKVQGLEGSWSGHVGKTDVRASVTLQNPVDLDNDVDLVRRARRFGSLTVNRSIAGWRVGGEWIVSGARDDSSGKLGGYGVVNLSARYNITRAWYVAAQIQNLLNKDYETAYSYNSPRRGAYLTVGWQQQ
>NZ_LR699553.1|WP_165184959.1|910939_912004_+|iron-ABC-transporter-permease
MSRQASRHSGAIPAALRVMSAKRAAAIWLALGVIALAVLMASLALGSVSLAPLRVLAALLPSHGPSAGSADLTAEIVRTLRLPRALAGFACGALLALAGALLQVLLRNPLAEPYVLGVSGGAASFALVAMIAGCAWWIVDASAFAGAFVSILLVLGLARRELWRGEPQDTSPRLLLTGAVIAAGWGALITLLLNLAPDNRLRGMLFWLTGDLNGGAMPWTALAALVVVLVAIMPAAPRLNVLLRGDAAAQALGVAVMPLRLRVYLVASLAAAAAVTTAGTIGFVGLVVPHMLRLAFGNDQRMLLPAAALGGGVAVMGADLVARTVIAPAQLPVGAITSIIGVPVFLWMLLRRRR

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Crispr_ID: NZ_LR699553_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699553_2

936589-936704

Orphan

Consensus_repeat	Method
AACGCCGGGCCGCCCCAAGTTTTCTCACCCCCCTCGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR699553_2

>merge|NZ_LR699553|2|936589-936704|CRISPRCasFinder
AACGCCGGGCCGCCCCAAGTTTTCTCACCCCCCTCGGGGGGCTGGCGCGTAGCGACAGATTGGGGGGCGCTCCTGGAACGCCGGGCCGCCCCAAGTTTTCTCACCCCCTCGGGGGC

>NZ_LR699553|2|2|936589-936704|CRISPRCasFinder
AACGCCGGGCCGCCCCAAGTTTTCTCACCCCCCTCGGGGG	GCTGGCGCGTAGCGACAGATTGGGGGGCGCTCCTGG
AACGCCGGGCCGCCCCAAGTTTTCTCACCCCCTCGGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699553.1\|WP_165187354.1\|945273_946527_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_LR699553.1\|WP_165184982.1\|934493_935147_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NZ_LR699553.1\|WP_165184972.1\|924152_925028_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_LR699553.1\|WP_165184993.1\|940681_941413_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758
NZ_LR699553.1\|WP_165184974.1\|925630_927466_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_LR699553.1\|WP_165185004.1\|946564_947611_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_LR699553.1\|WP_165184991.1\|938393_940679_+\|arginine/lysine/ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
NZ_LR699553.1\|WP_165184996.1\|941449_942376_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226304
NZ_LR699553.1\|WP_007175927.1\|921913_922552_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_LR699553.1\|WP_165184979.1\|931983_934119_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_LR699553.1\|WP_007175923.1\|925032_925218_-\|DUF3460-family-protein	unknown	unknown	gnl\|CDD\|378768
NZ_LR699553.1\|WP_165184998.1\|942446_943289_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_LR699553.1\|WP_165185001.1\|943429_944338_+\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
NZ_LR699553.1\|WP_165184988.1\|936856_937390_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_LR699553.1\|WP_007175909.1\|944407_945235_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_LR699553.1\|WP_007175926.1\|922694_923081_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_LR699553.1\|WP_165184976.1\|927494_931826_+\|translocation-and-assembly-module-protein-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_LR699553.1\|WP_007175915.1\|937736_938306_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NZ_LR699553.1\|WP_165184970.1\|923131_923965_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_LR699553.1\|WP_165184985.1\|935496_936585_+\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270

Protein	Function_ID	Function_description	E-value
NZ_LR699553.1\|WP_165187354.1\|945273_946527_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.46052e-80
NZ_LR699553.1\|WP_165184982.1\|934493_935147_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	3.60085e-47
NZ_LR699553.1\|WP_165184972.1\|924152_925028_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.86944e-68
NZ_LR699553.1\|WP_165184993.1\|940681_941413_+\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	3.0825e-05
NZ_LR699553.1\|WP_165184974.1\|925630_927466_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	1.88336e-102
NZ_LR699553.1\|WP_165185004.1\|946564_947611_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.98972e-73
NZ_LR699553.1\|WP_165184991.1\|938393_940679_+\|arginine/lysine/ornithine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NZ_LR699553.1\|WP_165184996.1\|941449_942376_-\|hypothetical-protein	gnl\|CDD\|226304	COG3781, COG3781, Predicted membrane protein [Function unknown].	4.09621e-146
NZ_LR699553.1\|WP_007175927.1\|921913_922552_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	6.10717e-34
NZ_LR699553.1\|WP_165184979.1\|931983_934119_-\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_LR699553.1\|WP_007175923.1\|925032_925218_-\|DUF3460-family-protein	gnl\|CDD\|378768	pfam11943, DUF3460, Protein of unknown function (DUF3460). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.	5.67357e-22
NZ_LR699553.1\|WP_165184998.1\|942446_943289_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	3.69447e-28
NZ_LR699553.1\|WP_165185001.1\|943429_944338_+\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	4.25262e-103
NZ_LR699553.1\|WP_165184988.1\|936856_937390_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	5.21961e-33
NZ_LR699553.1\|WP_007175909.1\|944407_945235_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.85351e-76
NZ_LR699553.1\|WP_007175926.1\|922694_923081_-\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	8.97037e-77
NZ_LR699553.1\|WP_165184976.1\|927494_931826_+\|translocation-and-assembly-module-protein-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	8.11705e-115
NZ_LR699553.1\|WP_007175915.1\|937736_938306_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	4.19897e-113
NZ_LR699553.1\|WP_165184970.1\|923131_923965_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	9.68889e-155
NZ_LR699553.1\|WP_165184985.1\|935496_936585_+\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	9.52949e-158

>NZ_LR699553.1|WP_165184985.1|935496_936585_+|iron-sulfur-cluster-carrier-protein-ApbC
MSIDRALVDAALAAVADPNTGRPYAAAKNIKNVAVQDATVSVDVVLGYPAMRQFDAIRAQFSDALRAVPGVADARVQVSQHIAAHTVQRGVKLLPNVKNIVAVASGKGGVGKSTTAVNLALALASEGASIGILDADIYGPSLPMMLGIVGRPESPDEKSMNPMTGHGLQANSIGFLIEQDNPMVWRGPMATSALEQLLRQTNWHDLDYLIVDMPPGTGDIQLTLSQRVPVTGAVIVTTPQDIALLDAKKGLKMFEKVGIPILGIVENMGTHICSNCGHEEHIFGAGGGERMGKEYGVDVLGSLPLDIGIREQADSGKPTVVADPEGRIAEIYRSIARKVAIHIAERARDMTSKFPNIVVQNT
>NZ_LR699553.1|WP_165184982.1|934493_935147_-|OmpA-family-protein
MNAKIMTRLAVFAVAGSLLAGCATQQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGITGYNWQAIHNKLSGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELIAQVVGHTDSTGQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSAQGMGQTQPIADNNTEAGRAANRRVEIYLRATAQHTTQ
>NZ_LR699553.1|WP_165184979.1|931983_934119_-|methionine--tRNA-ligase
MSAPATDLSAGAPSGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYVGADDTHGTPVMLRAEKEGLTPKQLIDRVWQEHKRDFDSFGISFDNYYSTDSEENRVLSENVYLALKEAGLIDARDIEQAYDPVKEMFLPDRFIKGECPKCGAKDQYGDSCEVCGSTYLPTELINPYSVVSGATPIRKTSTHYFFRLSDPRCENFLRAWVGGLAQPEATNKMREWLGDAGEAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLAEKRGLDFDAWVRKGSKAEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSLIETGLNPEWLRYYFAAKLNSTMEDLDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMQHPLLTSLRAAVPQIAANYEAREYNRALRQTMELADAVNAYVDTAKPWDQAKDPANGVALHETCSVSIEAFRLLSLALKPVLPKLAEAVEGFLAIEPLVWADANVPLSSTRPINAYKHLMTRVDPKQIEALLAANRDSLQATPEAAAPADAKGKSKAAKAAAAEKDETPGVISIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGMSEGMVLAASATDEKAEPGLYVLEPDSGAKPGMRVK
>NZ_LR699553.1|WP_165184976.1|927494_931826_+|translocation-and-assembly-module-protein-TamB
MTTDVSAQPPAQPPGAHPPGEPPRQPPGQQPPPEGPAPRRRLGRLLLKSLAWTVAVVVLLLALAAGLLYGALTTERGTAYAWQAAVKLLGGKLSGTLESGALANGLQLRQVRWRSLDGSGTDIQIDRVAGRWALARQPWRFTVDYLHVGTVDARIGASSSSSGPMKLPQDLRLPIQLDIRDVQVDKLLLHQGASTTEFSRFVFHGRSDGRHHEAAIERLDTPFGAVTAAAKLDGVRPFPLSGDIGYSGKVNNEAVQVGGHLSGSLENLIAELDASGMKLAGHARVEAEPFGDVPLQRATLTFDHINPQAFSPGAPQADLAVRAELQPVGQGAAEAAVSGASGASGASAAQRAIAASGEHSAQPRASGKSTAGFAVAGHVSIVNAKPGAIDQNLLPLIDANADVRLDAQTQRISNLNVRLVKSATLTGGGALSGKHGQFDLQVAGLDLNALQATVRPTQLSGPISVRLNDDVQSVTLDLADPKAALRAQGKITFDPARMSFNDVRITSGKGRIDLSGALKHDANSTYNLKAQLTDFDPLTLTSQMPSRTPVAGPAPAASSAGKSGTAQATAQAGSTAGAKSAAPADKAAAAVKNTAKAAVRTEVAQRKTPAPKRGAPPARKIEARVNGTLSAAGMLGPVFTTKADFKLGPSVYDGLPLTGSGTVQLAGSRILPSRANLSVAGNQVDVQGSFGARGDRLKFRVDAPELERLGFGLAGLVAADGDITGSFAHPNVVLNYKADSVVFSSNRIGHAEGHAELRDGANGALVFTTDARNVSAGGVDLSTLTARLSGTRANHTLEAAATGKLQDRPLDLTLAANGKLTEAREGTRWDGTVTRLQNRGTPSFNLESPLAVSAGPQHLTLGATRLTLEGAVLSLKTFAFDHGKIQSAGSLTDISAVRLQDLRRQITGEPPIVKTDLVFDGDWDFTLGSTASGHIQLKRRSGDVTVEIGRGLASLGISDISARAEFSGGNRLNATVHAQASRIGVIDADAHTTLVMRDGFLTVNEEGALTGNVNANVPSLKTTGGLFGPSYLLDGHLALKLALGGTVAKPNLTGSLLGDGISATMVDQGVQLKDGVVRIALSQNLVDFQQVEFHGASGTLRATGRVRLDGAQPDLTASIVADKLELFAAPDRNLSLSGSATVANGGTLGGMEINGKFVVDHALFDMPEQSAPKLGDDVVVVRPDGSVAGERPRPVAGTNKPIGPFAPRANIDINLGNSFRFRGQGADLGLSGTITAMSAPNLPLRAVGNVRVTPGSTYTAFGRKLNIENGFFTFNGPVANPGINILAMRRNQQVEAGVQVTGTVQFPTAKLVSEPNVPDNEKLSWLLFGHGTDQGNNLGQQSTMTTALALLGSASGKRIAQTFGLDEFSIGRSEVGLTDPQVVMVSKAINEWLVIGYEQGLQSASNAIKATVNLTRYWSVAAYGGTFDGLDLLYTRRFDRIHW
>NZ_LR699553.1|WP_165184974.1|925630_927466_+|outer-membrane-protein-assembly-factor
MAGCAIDKPRLRRGKAGFRRGPRTPMRHWLRAWLAFGLVMLTLAAGHAHAAKAAASYKVDIEATPRSLRKLLEAHLDIARFAKRPDISDDQFEFLITATPQQVRDLASTQGYFTPVVRTDVRTVDDTKRVTVSVDPGPQTLISSISLSFRGPVLTEDPAQENAARFAFSLHEGDPFSQGGWDDAKNASLKALQARRYLGAKIYHSEARVDPRTHEAKLSVTYESGPTFTMGKLDVSGTRRYPEQIVDNVNPISVGDIYDVQRVAELQRQLQNTPYYASVAIDVDSDPAKPVETPMHVKVSEYPYNSIRGGVGYSTDNGPLVQGSYSYLDTFGKAWPFTVEGRVDQIQQYGQIELSMPPGRRAWTNSMLASYTTTDVSDTRIYSIRGGVQRARTSQFIDYNYALLFYQDRLDQNAAAPTTSRALVPSWSWTRRNTDDPLFPRKGNLIHVEAGFAVKGVLTDQTFIRGYARGQQYLPIGKEDLVLIRAELGGVFTSGPSSGIPASLLFRAGGSNSVRGYGYQSIGNNVDGSVLPTKYLVTAAAEYQHWFNHDWGAAAFFDVGTATDTWGEKVFYPGVGVGARWRSPVGPVNVDVAYGIRNRSVRPYLTLGIAF
>NZ_LR699553.1|WP_007175923.1|925032_925218_-|DUF3460-family-protein
MYQSDITQFLNQLKQQKPNLEAEQRRGRALLWDKQPIDLEERAEQKASRVEQTPYSYYQNF
>NZ_LR699553.1|WP_165184972.1|924152_925028_-|segregation/condensation-protein-A
MSHADEAHGAPPAPADAALAAPATDSTPDTVDGIAFARLYGEPLFKMPTDLYIPPDALEVFLETFEGPLDLLLYLIRKQNFNVLDIPMADVTVQYLGYVDQLRQTNLELASEYLLMAAMLIEIKSRMLLPVKKADSGEEAEDPRAELVRRLLEYEQMKLAAQRIDQLPQLGRDFLRAEVYIEQSITPRFPDVNSEDLRAAWADVIKRAKLVQHHRISREELSVREHMSSILRQLQNARFIEFSDLFDTSKGVPVVVVNFIAVLELCRESLVEITQAEPFAPIYVRLAYLPA
>NZ_LR699553.1|WP_165184970.1|923131_923965_-|pantoate--beta-alanine-ligase
MKVISSIHELRDQLRGQNRTAFVPTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTMEADIEKLQKENVYVLFAPTEKDLYPEPQEYRVHPPHDLGDILEGEFRPGFFQGVCTVVMKLMSCVQPRVAVFGKKDYQQLMIVRRMCNQFALPTDIIAAETVRDADGLALSSRNRYLQSAERAEAPRLAAELNQVREAVLGGERDFAKIERAAMAALATRGWQPDYIAVRKRSNLLPPGPEDANAELVVLAAAKLGATRLIDNLEI
>NZ_LR699553.1|WP_007175926.1|922694_923081_-|aspartate-1-decarboxylase
MQRNMLKSKIHRVAVTHCELHYEGSCAIDEDLLEAANIVENERIDIWNINNGERFSTYAIKGERGSGMISLNGSAARRAQLGDLVIIAAFAVVDEAELKAGWKPDLVFVDDNNRIKGSRDHVPTQNWT
>NZ_LR699553.1|WP_007175927.1|921913_922552_+|ParA-family-protein
MTVIVVANPKGGVGKSTLSTNLAGYFAAAGEWVALADLDKQQSAHAWLSLRPDTLPAIETWEVNLDAPVKPPKGLEHAVIDTPAGLHGNRLNIALDLADKVIVPLQPSMFDILATQEFLERLAKEKAVRKGAIEIGVVGMRVDARTRSAEQLHRFVEGLKLPVLGFLRDTQNYVQLAAHGLTLWDVAKSRVEKDLEQWQPIVEWTSGAGRKG
>NZ_LR699553.1|WP_165184988.1|936856_937390_+|superoxide-dismutase-family-protein
MGKRIDGQAVHAFIVLAATSVLLCGCSAFLRPQEKRADAQLLPTVGNQARGLVTFIERSDGVQVTYNLAGMPPNSDHALQVHERGDCNAADGSSAGQVFSPAAERLKTGARVEGDLGNIHADANGVATGFIVAPDVSLDGIRSVLQRAVVLHHDATDPYAYPQHGAGPALACGVIRQ
>NZ_LR699553.1|WP_007175915.1|937736_938306_+|dCTP-deaminase
MTIKSDKWIRRMAESHKMIEPFAPDQVRVSEDGRKIVSYGTSSYGYDIRCADEFKIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTVCLGKSTYARCGIIVNVTPFEPEWEGHVTLEFSNTTPLPAKIYANEGVAQVLFFESDEICETSYADRGGKYQGQHGVTLPRT
>NZ_LR699553.1|WP_165184991.1|938393_940679_+|arginine/lysine/ornithine-decarboxylase
MKFRFPVVIIDEDFRSENISGSGIRALAEAIEKEGAEVLGLTSYGDLTSFAQQSSRASCFILSIDDDELLPYVDNVVVEGETPELAAAIVALRAFVTEVRRRNADIPIFLYGETRTSRHLPNDILRELHGFIHMFEDTPEFVARHIIRETKVYLDSLAPPFFKELVQYADEGSYSWHCPGHSGGVAFLKSPLGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFSADHVFFVTNGTSTSNKIVWHGTVAPGDIVLVDRNCHKSILHAITMTGSIPVFLTPTRNNFGIIGPIPRSEFEPENIKKKILANPFAREALAKNPELKPRILTITQSTYDGVIYNVEMIKEMLGDWLDTLHFDEAWLPHAEFHEFYQDMHAIGAGRPRIGAMVFATHSTHKLLAGISQASQIVVQDSKNSRFDKHRFNEAYLMHTSTSPQYAIIASCDVAAAMMEAPGGTALVEESIAEALDFRRAMSKVDAEYGDDWFFKVWGPDQFAEEGIGSREDWMLRPNDPWHGFGPLADGFNMLDPIKATIVTPGLDMDGGFGESGIPAAIVTKYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNSMVTELQQFKDDYDNNQPLWRVLPEFVSHHPMYERVGLRDLCEQIHSVYRANDIARLTTEMYLSSMEPAMKPSDAFAKLAHREIDRVPIDELEGRVTSILLTPYPPGIPLLIPGERFNRTIVNYLRFAREFNERFPGFHTDIHGLVGETINGRIEYFVDCVRG
>NZ_LR699553.1|WP_165184993.1|940681_941413_+|DUF1311-domain-containing-protein
MRRAKSPLGAGGPQRAFCALALAAAAVFGAASLPAHAEVAAADPIDASMRACLARSDMSSTVGQVQCMDNARIGWRTALDNAWQQLQQKVPPAQRKQWEKSQASWQASRDAEKPLLAAVFATTRGSMYVLAEADMQLQPVRDRALALRSAVAKASAGGDPPRRVRACRADAQCEHAMFDLNRYYRRLQSKMPVRTRPTLARAQKAWTVYLNATTPVIDERGRIDIIGARVATLKRLSETVGNS
>NZ_LR699553.1|WP_165184996.1|941449_942376_-|hypothetical-protein
MIIRPHLHWFRMLLAWRGSVLPQLLPRLFLIFCISIVAVAAHDHLLPISLNLNTTAPFSLIGIALAVFLGFRNNASYDRWWEARKLWGQLLNESRSLTRQVLTLPVRPLPKEDVREFFTALGALPHALRHQLRKSDPREDLAARLPQALFERVMASRYKPATLMLYLGEWVQRHARAGAIDPMAVIAFDRNLNGISDVIGGCERIVSTPLPFAYSVMIHRTVYFFCASLPFGLVDSIGIFTPVFAVFVAYTFMAHEAIASQIEEPFGTDDNDLALHTMSMVIEDAMRDLLGEPALPLPSPEAEGYILN
>NZ_LR699553.1|WP_165184998.1|942446_943289_-|EamA-family-transporter
MLSYTGGLVLLAALLHASWNAMLHGNRDRFLSMTWMSIAIATVSSFVVMFTPWPTGAAWPYIVVSGLLHIVYNMTLVRAYRRSDLAQAYPIARGSSPLLVTLGAALFAHEAIGALHALGIAMISGGIIAIALQGGRVSRAGALAALTTGATIALYTVIDGIGVRLSEGRALTYTAWMFLFYWLMPLLFVAMRGLAALWTPVRAAPIAVGSSLVGGLVSIAAYGIVIWAMQSGAMGAVSALRETSVVFAVLIGRVFLREAVSAKRWLACVIVAAGAVCLGV
>NZ_LR699553.1|WP_165185001.1|943429_944338_+|transcriptional-regulator-GcvA
MKRVLPPLNALRAFEAAGRLGSFKEAAAELHVTHGAVSQQVRLLEEWLGAPLFERHNRRVVLTAAAKAYLGEIGPLFEQLSQATARYGFPETVSRTLSVNAPATFTLRWLVPRLAKFRAVHPDVDVKVETSNESAESLKDIYDIVIRGGPDTFYGYSMRPFLSEERLPVCSPALLQRLPLRTPDDMQEHTLLHTSSLPRLWPDWLASAKIPALRPAAALTFDHFYLTLQAAIDGIGIAMGPTALVSDDLAAGRLVAPFAGPRLPSRSYCTYVPEGKSADDLVVLFRSWLEREGMCSRAETNL
>NZ_LR699553.1|WP_007175909.1|944407_945235_-|ABC-transporter-permease
MQEQRNKVLTERIATRWVRLHTAVVLFFLIAPILAIIPLSFNSGSYFSYPMQGFSFRWYEQALTSADWQRSLLNSIGIGAASTLIATCLGTLAALGLSRAQFPLRSLIMPIIISPMIVPIVVVAAGFYLIFAPLGLVNSYPGVVLAHAALGTPFVVITVTASLLSFDQSLLRAASGLGAAPWVTFRRVTLPLIMPAVATGSVFAFATSFDEVIVILFIGGPDQTTVPRQMWSGIRDSIDPSILAVATMLIVFAVLLFASINWLRGRAAAASSALT
>NZ_LR699553.1|WP_165187354.1|945273_946527_-|ABC-transporter-permease
MPASARATAVGSPTRADGGASFQKARRRASVRALLLALPLIVFLVSTFIAPIALLLARSVQNHEMSNGMPALTRALDAWDGRGVPDEPMFALLAAGLREAQQSGQLGTVARRLNFDQAEFRSLLMRTARQLPADAPPAWKPALIELDERWNSPEIWRLLKRAAASPTPDYLLAAVDAQVTQQGSVAFVPDNASIYRQAFARTISISATVTLLCLVLGYPVAWLLANLPAKSSNRLMLFVIVPFWTSLLVRTTAWYVLLQPGGVINSLLTGLGLATHPLPLIFNRTGVLIGMTHVLLPYMILAIYSVMKSVSPVYVRAAQSLGAHPFTAFVRVYIPQTLPGVGAGCFLVFVLALGYYITPALLGGAGDEMISQLIAIQTNTQLNWGLAGALSAYLVIFTAIFYFLFNRIVGIDRLRFG
>NZ_LR699553.1|WP_165185004.1|946564_947611_-|ABC-transporter-substrate-binding-protein
MRNNLKAQCAALAVLAFTAAASQAAETLSVVTFGGAYEAAAKKAYFEPFTQATGIGFSTESYDGGLAKLSAMEQAKNTTWDLIDLETNDAITACDEGLLQKFDKKSLGKTSDFIPGSISDCAVASMVWSTVYAYDASKLKTAPTTVNDFFDLQKFPGKRGLRKSPKVSMEWALIADGVDPKDVYKVLGTPAGVDRAFKKLDTIKKSIVWWESGAQAPQLLADGAVVMTQAYNGRIDDAAKKDNKPFKAVWDAQVYDFDWWGVPTGAKHADDAAKFIVSASQPKAYADLSKYIAYAPPRKDAIALVDKQRLADLPTSPQNFKRALQINATFWADNADQINKRFQVWLTQ

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Crispr_ID: NZ_LR699553_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699553_3

2060767-2060897

Orphan

Consensus_repeat	Method
ACGGCAAAGCCGAAGGCGAAGAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LR699553_3

>merge|NZ_LR699553|3|2060767-2060897|CRISPRCasFinder
ACGGCAAAGCCGAAGGCGAAGATACGGGCGATGGTGATCAGAACCGCGAAAACGGCGATGGCAAAGCCGAAGGCGAAGATCCACCGCCGGACGACAAGGGCGGAAAGAAGGGCAAAGCGAAGGGCGAAGAC

>NZ_LR699553|3|3|2060767-2060897|CRISPRCasFinder
ACGGCAAAGCCGAAGGCGAAGAT	ACGGGCGATGGTGATCAGAACCGCGAAA
ACGGCGATGGCAAAGCCGAAGGC	GAAGATCCACCGCCGGACGACAAGGGCGGAAAGA
AGGGCAAAGCGAAGGGCGAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699553.1\|WP_165185857.1\|2054600_2054858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185891.1\|2065387_2066215_+\|exotoxin	unknown	unknown	gnl\|CDD\|132846
NZ_LR699553.1\|WP_165184128.1\|2063438_2064020_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185875.1\|2059741_2060623_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132933
NZ_LR699553.1\|WP_165185861.1\|2055899_2056457_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185851.1\|2053916_2054348_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119346
NZ_LR699553.1\|WP_165185896.1\|2066436_2066817_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185872.1\|2058089_2059745_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377468
NZ_LR699553.1\|WP_165185899.1\|2066840_2067518_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_LR699553.1\|WP_011487633.1\|2062027_2063065_+\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NZ_LR699553.1\|WP_165185866.1\|2056929_2057181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185880.1\|2061294_2061951_+\|head-decoration-protein	unknown	unknown	gnl\|CDD\|376964
NZ_LR699553.1\|WP_165185863.1\|2056522_2056933_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185869.1\|2057820_2058090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376942
NZ_LR699553.1\|WP_165185889.1\|2064929_2065391_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185894.1\|2066238_2066433_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185854.1\|2054344_2054584_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699553.1\|WP_165185886.1\|2064029_2064224_+\|DUF2635-domain-containing-protein	unknown	unknown	gnl\|CDD\|378516
NZ_LR699553.1\|WP_165185859.1\|2054859_2055867_-\|phage-Gp37/Gp68-family-protein	unknown	unknown	gnl\|CDD\|377854
NZ_LR699553.1\|WP_165185883.1\|2063068_2063419_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LR699553.1\|WP_011487633.1\|2062027_2063065_+\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.16062e-101
NZ_LR699553.1\|WP_165185851.1\|2053916_2054348_-\|ASCH-domain-containing-protein	gnl\|CDD\|119346	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.	2.14254e-35
NZ_LR699553.1\|WP_165185891.1\|2065387_2066215_+\|exotoxin	gnl\|CDD\|132846	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomonas. Even though VipD shows high sequence similarity with several functional regions of ExoU (e.g. oxyanion hole, active site serine, active site aspartate), it has been shown to have no phospholipase activity. This family includes ExoU from Pseudomonas aeruginosa and VipD of Legionella pneumophila.	6.12855e-43
NZ_LR699553.1\|WP_165185875.1\|2059741_2060623_+\|S49-family-peptidase	gnl\|CDD\|132933	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	3.20445e-98
NZ_LR699553.1\|WP_165185872.1\|2058089_2059745_+\|phage-portal-protein	gnl\|CDD\|377468	pfam05136, Phage_portal_2, Phage portal protein, lambda family. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage capsid and the tail proteins.	5.99503e-107
NZ_LR699553.1\|WP_165185869.1\|2057820_2058090_+\|hypothetical-protein	gnl\|CDD\|376942	pfam02831, gpW, gpW. gpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking gpW contain DNA-filled heads, and active tails, but no infectious virions. gpW is required for the addition of gpFII to the head, which is, in turn, required for the attachment of tails. Since gpFII and tails are known to be attached at the connector, gpW is also likely to assemble at this site. The addition of gpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that gpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in gpW (its calculated pI is 10.8) is consistent with a role in DNA interaction.	7.95704e-08
NZ_LR699553.1\|WP_165185899.1\|2066840_2067518_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	1.61351e-32
NZ_LR699553.1\|WP_165185886.1\|2064029_2064224_+\|DUF2635-domain-containing-protein	gnl\|CDD\|378516	pfam10948, DUF2635, Protein of unknown function (DUF2635). This is a family of phage proteins with unknown function.	9.91997e-16
NZ_LR699553.1\|WP_165185859.1\|2054859_2055867_-\|phage-Gp37/Gp68-family-protein	gnl\|CDD\|377854	pfam07505, DUF5131, Protein of unknown function (DUF5131). This is a family of bacterial and phage proteins of unknown function. There are three highly conserved cysteine residues in the disposition, Cx6Cxxc, amongst many highly conserved residues.	2.64651e-119
NZ_LR699553.1\|WP_165185880.1\|2061294_2061951_+\|head-decoration-protein	gnl\|CDD\|376964	pfam02924, HDPD, Bacteriophage lambda head decoration protein D.	1.9233e-16

>NZ_LR699553.1|WP_165185875.1|2059741_2060623_+|S49-family-peptidase
MSNYPHLATRLFNVPIAIAPQKAEIVMAALADRFGIAKMFRGSGDMVVLADGGAQAFLQSADTSRADYRPYEVVEGVAIVPIEGTLVHKLGELRPYSGMTGYDGIRANLSMAMADEGVRAIVLDIDSPGGEVAGCFDLVDSIYAARDVKPIWAICTESAYSAAYAIATAASRIIVPRTGGTGSVGVICMHVDFSQALTKAGIEVELIYFGDKKADGSDMKPLSKDARARFQSDVNAMGQLFVETVARNRGLTTANVRGTQAGTFLGAAGVEIGFADAVMSPDEAFASLLDELG
>NZ_LR699553.1|WP_165185872.1|2058089_2059745_+|phage-portal-protein
MSSATTLVDASGRPLRARANTGAGPGNLANNVGRAFFPYQAADWQTQEMGAWLPWIRSPDAEINQFRDRMVARSRDQVRNDGRSSGGITRILDNAVGASLRLSAAPDYRALAEISGAAFDIKWANEFRRAVEARWRLFSNDFGRYNDVSRQLTVSQQLRLALRHKLIDGEDLVINYWMPERVGRGGARYATAYLVVDPDRLSNPNQMVDTRHMRNGVEVDENGVPLAYHIRKAHQNDWYNSVESMIWERVEREDDDGWLRVIHDFERDRAGQNRGVGVFIPVLAHAKMLARYYGIELQAAALAASIGTYVTSPYDPSEVQDAVGGEDHELGYYQGLRAEWNEERPAMFNGVRVPALAPGEDIKALTSDHPHNGFTEFVHEMQGCVASALGISLEQVTQDWSRSNYSNMRGSLLESWKTLIRRRLEFSAGTATPMYAVWLRESMENGELPLPNGAPDFLDGVTAYAGCSWLGPARGWVDPVKEPQGSILKMDAALTTLKQEAAEQGSDWEELLDQRQIEIEAFRERGIPLPEWGGSEMATRTDEPPQQPQAA
>NZ_LR699553.1|WP_165185869.1|2057820_2058090_+|hypothetical-protein
MATNDLCSPLYGMTDAQLQAALAAAQQAYIDLRTGDKAVTVAYAQGDGSRSVTFQTTNLAAVRMFISDLQAALNPGVKMCKRRRMVPLF
>NZ_LR699553.1|WP_165185866.1|2056929_2057181_-|hypothetical-protein
MNDIMSDHREIEPQHRKSMNDVAAVMANIFKGYGFALFIFPLDGDGGRMNYISNAERADMLVALKEFIANNEGRVHSAPESKQ
>NZ_LR699553.1|WP_165185863.1|2056522_2056933_-|hypothetical-protein
MNNPILIGQAEEIDLLQPQVRAMLGKEGVYIGGDTKNPDLLVPLVSQGGRVFCLAIDHELAPDRFLSTLTLHGPYVPQPPATSGDHLELLEKAHAAIDGLFAQLIITDPNFRPSKSKYWPDMVAISNAVKQARGEA
>NZ_LR699553.1|WP_165185861.1|2055899_2056457_+|hypothetical-protein
MIRVVNRYVALVMAAIVGMLLYDRIDWAKLDAASIAAWVQAVGSIIAIVIAVAVPMVQQKRDRELRAQTEKEIAGRQGLILVSIAARVERAVQRAIADFTQGVGNDHMDTGEIDELLTRLTDAQQTAHGIAAQRLVFQMHELARRVRVQVTTHPFERNDYWTAEFRMWQNNARDAISKAMAMMVN
>NZ_LR699553.1|WP_165185859.1|2054859_2055867_-|phage-Gp37/Gp68-family-protein
MSANSNIEWTDHTFNPWEGCQKVSPGCDHCYAEARNARFAGGTAINWGPGALRRRTSAANWRKPLQWNANHRAFFADHGRRQRVFCASLADVFDNAVPDGWRSDLLDLIARTPDLDWLLLTKRIGNAEHLLRQLTSTGDREDGLSHVESKSEHWGHCVAHDWLAGMPPNNVWLGATIVNQEEADRDIRKLLSIPARVRFLSMEPLLGPVNLTRLLHGDESDLDALRGQVVYTSQRFAVPPEPLGKAISWVIVGGESGPAARPMHPQWVRSLRNQCAAAQVPFLFKQNGEWVSVSEVAGVGAHHQFEDGSTVRRIGKRAAGRKLDGRSHDEFPEVL
>NZ_LR699553.1|WP_165185857.1|2054600_2054858_-|hypothetical-protein
MATRTKRPSSRDIACIRIGFEHYLLDADKAMQVLKLMRESISCNRDFKGRRMLYIAGAEPDLELSMVKASEVVVPGSQLALDDMR
>NZ_LR699553.1|WP_165185854.1|2054344_2054584_-|hypothetical-protein
MSIRTLIEVNHDLLHRLQDSPEIIAEILARLGGSYYNGALNEANEAGRSLDIWNGVRIVHQYHHSTRLTVKTDYAKIKL
>NZ_LR699553.1|WP_165185851.1|2053916_2054348_-|ASCH-domain-containing-protein
MKALSIRQPWAWLIVNGHKDIENRTWPTRFRGRVLIHAGKGMTRAEFEDAAHFIAMISPIDPLPLADMAKAARGGIVGVATITGCLPGAQKVSPWHMGDQFGFQIADARPLPFLECKGALGFFDVPSDVAAQLRQMHDLGAIT
>NZ_LR699553.1|WP_165185880.1|2061294_2061951_+|head-decoration-protein
MTQTPLIEGRHDGGFLVSESRGHRSRDRGTLSGAAKIQAGQVLGRKVGGTAAAAAKAGNTGNGTFTLDATTPVVGNAQPGVYVVRCATAAANGGTFRVFDPTGDVIGDVAVGATFNDQIKFVIADGATDFVVGDEFDVTVSALSKAYVPLSLTATDGSQVASAISFANVDATLADQTGTVVTRDCEVNGFELFWPTGASANQISAGTAQLAALGIIVR
>NZ_LR699553.1|WP_011487633.1|2062027_2063065_+|major-capsid-protein
MASLDVFHQDAFTTIQLTTAVDKYPFQPTGLGDLNIFEPDPIRTTALAVEQRQGKLVVVPFSERGQEGTQRTTEQREARYFKVPRIMHADTLYANEIQDIRAFGTESELMQVQAEVARRLNGPTGLTSNIEYTWEYHRLAAVQGMLLDADGTVKYNWFDEFGITPPSLVPFNLSAQTPNSLRPIVNGIRRTMARKAQGAFLPTTKIFALCGDLFYDELTNHTDVIRTYLNWSAASELRDDSQGAAFEAFPFAGVTWSNYRGSDDNTTLKIPDDEVHFFPVGAPGVFRVAYAPGESFEWVNTPGKPIYVIPIYDRDRNSFWKMEAYSYPLHICTRPEVLQKGHAGA
>NZ_LR699553.1|WP_165185883.1|2063068_2063419_+|hypothetical-protein
MPFNWRAVTDKMNGVVMQTFGENVRVLYMPASGATPYEVDGVFDEAFLDLAVVDGVQVATVQPRLGIQVSQFEAAPVQDDQLQIKRTGLIYVVREARLDGWGGGGLMLNLIGGDGG
>NZ_LR699553.1|WP_165184128.1|2063438_2064020_+|hypothetical-protein
MRKMVVAAFQAAAAAPTIQSPGDWSTPPAKLPAILVRCGDDQKASIGNIGETQFNTDFVIEIRGIVSGPTGEAAQDALEDLGATIEDILLRNIAIRAQTQDFPMIATVTEIKSDGRLHFGAVSMAVHFQIYEAFDPDVETTLERMTVTADLRNVFDASGTYPNPPFPDAVQPAPRTSGPDGRAEGGFDVELPQ
>NZ_LR699553.1|WP_165185886.1|2064029_2064224_+|DUF2635-domain-containing-protein
MFVKPAPGLKIRDPELKDLIPDEGRNVSADDLYWHRRLRDGDVVLVESTGVPPAAEAARITGSE
>NZ_LR699553.1|WP_165185889.1|2064929_2065391_+|hypothetical-protein
MKRLSMLLAAGLVAAVALVGCASAPTQTPAQIAANICPGVQSEIDVLQKSGVFTGGAQATLTNQIQPDVDAVCAAGAALTVTTVDIRKLVQATFPIVVAVIANSSLTDQQKLQATLAVGVVVTGINTALSLQPATSTTTPGPALTPASGAIAS
>NZ_LR699553.1|WP_165185891.1|2065387_2066215_+|exotoxin
MSKPIRVAFSGSGFKVPAHVGALQAIADAGYQAVELAGTSGGSICAALYAAGMPLSDMKTLALTHDWSNMMSFSPLAALRLRGFCDGSTLLAWMKEHTGGKTFAELDIDLTAVASNVANEGAFDFSRTATPDVPIALAVRSSTSIPFIFEPVAIADALLSDGGMVNNIPVDRLKVDDVPRLGVQLVSLELPLKPKARLLPHQFVMRLIDLMLSACESTHVSAAQAAGACMAFVETGYASTLDRNMPLEVRQRLYDDGYAATKTALTSIPAQSAKL
>NZ_LR699553.1|WP_165185894.1|2066238_2066433_-|hypothetical-protein
MTLDELKGTGIVVSHIVDAELGNKSIACVGIVTPGGIRSNDGQYWLGDSDIEAASRCYEAVFTR
>NZ_LR699553.1|WP_165185896.1|2066436_2066817_-|hypothetical-protein
MIVPDATRKFLDILYIHTVFLKAMRHHRPLTAADLAEIYDREPTPTVLRLLREIHRLRATVLRANQIRNMIGKQGSAFVAGTVWECFERELDAEPCIRDPLTPRQEQRVESTMQRLAEWRKNGRRD
>NZ_LR699553.1|WP_165185899.1|2066840_2067518_+|SOS-response-associated-peptidase
MCTNYRPPEADLFEAFTDFPVPRFEYPPEIYKDYVAPILRLTDGARLTDPATFAMIPRKRIPPGVKVFDTMNARAESVGEKRSYSSAWKKLQLCLIPCATFYEPNYETGKPVRWRIGVEGGRPFAIAGLWRAWEDPDGVSLSFTMLTVNANEHPLMKRFHRPGDEKRSLVILRPEEYEDWLGARSTDEARSFLNLFPAEEMFAEAAPKPQKVTKPTGEGGDLFAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR699553_3	3.1\|2060790\|28\|NZ_LR699553\|CRISPRCasFinder	2060790-2060817	28	MG009575	Mycobacterium phage Kumao, complete genome	67275-67302	5	0.821
NZ_LR699553_3	3.1\|2060790\|28\|NZ_LR699553\|CRISPRCasFinder	2060790-2060817	28	NZ_CP020613	Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T plasmid unnamed, complete sequence	64885-64912	8	0.714

1. spacer 3.1|2060790|28|NZ_LR699553|CRISPRCasFinder matches to MG009575 (Mycobacterium phage Kumao, complete genome) position: , mismatch: 5, identity: 0.821

acgggcgatggtgatcagaaccgcgaaa	CRISPR spacer
tgcggcaatggtgatcagaaccacgaaa	Protospacer
   ***.***************.*****

2. spacer 3.1|2060790|28|NZ_LR699553|CRISPRCasFinder matches to NZ_CP020613 (Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.714

acgggcgatggtgatcagaaccgcgaaa	CRISPR spacer
ctcggcgatggtgatcggaaccgccggg	Protospacer
 . *************.******* ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

598511 : 607767

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007179200.1\|598511_600473_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	7.8e-148	49.3
WP_007179199.1\|600744_601887_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	3.6e-28	40.2
WP_165184443.1\|601912_603835_+	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	5.6e-50	34.4
WP_007179197.1\|604052_604868_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	9.1e-34	28.8
WP_007179196.1\|604906_605587_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	5.7e-05	29.1
WP_007179195.1\|605583_606132_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_165184446.1\|606180_607767_-	polynucleotide adenylyltransferase PcnB	A0A172Q0J1	Acinetobacter_phage	4.4e-16	30.1

DBSCAN-SWA_2

2763905 : 2796973

Burkholderia_phage(57.14%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165186338.1\|2763905_2765741_-	hypothetical protein	A0A2H4J9C6	uncultured_Caudovirales_phage	9.8e-36	28.8
WP_165186339.1\|2765922_2766204_-	hypothetical protein	NA	NA	NA	NA
WP_165186340.1\|2766258_2766795_-	hypothetical protein	NA	NA	NA	NA
WP_165186341.1\|2766806_2767724_-	hypothetical protein	A9YX14	Burkholderia_phage	1.1e-16	36.1
WP_165186343.1\|2767782_2768445_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.0e-83	66.2
WP_165186345.1\|2768451_2769627_-	hypothetical protein	A9YX12	Burkholderia_phage	4.4e-130	61.9
WP_165186347.1\|2769623_2769977_-	hypothetical protein	A9YX11	Burkholderia_phage	2.5e-28	55.6
WP_165186349.1\|2769986_2770742_-	hypothetical protein	A9YX06	Burkholderia_phage	1.1e-78	61.4
WP_165186352.1\|2770728_2771658_-	hypothetical protein	A9YX04	Burkholderia_phage	4.6e-66	51.1
WP_165186354.1\|2771723_2772038_-	hypothetical protein	NA	NA	NA	NA
WP_165186356.1\|2772034_2772589_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	3.0e-36	46.4
WP_165186358.1\|2772585_2774679_-	glycoside hydrolase family 104 protein	A0A2H4J9N7	uncultured_Caudovirales_phage	5.1e-89	33.7
WP_165186361.1\|2774668_2774848_-	hypothetical protein	NA	NA	NA	NA
WP_165186363.1\|2774844_2775384_-	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	4.2e-11	29.8
WP_165186365.1\|2775380_2775830_-	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	5.0e-42	61.6
WP_165186367.1\|2775845_2777669_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	2.7e-110	42.4
WP_165186369.1\|2777740_2778322_-	hypothetical protein	A9YX29	Burkholderia_phage	1.1e-54	55.7
WP_165186371.1\|2778314_2778698_-	hypothetical protein	A9YX28	Burkholderia_phage	1.6e-33	60.2
WP_165186373.1\|2778697_2779231_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.0e-38	53.1
WP_165186375.1\|2779235_2779619_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	4.4e-39	64.2
WP_165186378.1\|2779652_2780132_-	hypothetical protein	NA	NA	NA	NA
WP_165186380.1\|2780133_2781222_-	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	4.8e-131	75.7
WP_165186382.1\|2781291_2781798_-	hypothetical protein	NA	NA	NA	NA
WP_165186384.1\|2781807_2783283_-	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	5.2e-128	62.5
WP_165186386.1\|2783309_2784053_-\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	2.0e-72	58.0
WP_165186388.1\|2784043_2785534_-	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	7.1e-194	68.5
WP_165186390.1\|2785556_2787104_-\|terminase	phage terminase large subunit	B5AX37	Iodobacteriophage	7.8e-111	46.7
WP_165187470.1\|2787460_2788741_-	site-specific DNA-methyltransferase	K4HZA5	Acidithiobacillus_phage	5.5e-94	45.3
WP_165186392.1\|2788873_2789131_+	hypothetical protein	NA	NA	NA	NA
WP_165186394.1\|2789307_2789829_-	hypothetical protein	NA	NA	NA	NA
WP_165186396.1\|2790092_2790689_-	DNA-binding protein	A9YWZ1	Burkholderia_phage	4.5e-75	71.5
WP_165186398.1\|2790705_2791182_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	5.8e-57	68.2
WP_165186400.1\|2791233_2791431_-	hypothetical protein	NA	NA	NA	NA
WP_165186402.1\|2791465_2792125_+	hypothetical protein	NA	NA	NA	NA
WP_165186404.1\|2792434_2792650_-	hypothetical protein	NA	NA	NA	NA
WP_165186406.1\|2792646_2793774_-	YdaU family protein	A9YWY6	Burkholderia_phage	3.1e-48	57.6
WP_165186408.1\|2793770_2794769_-	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	2.9e-151	76.5
WP_165186411.1\|2794765_2795524_-	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	1.9e-62	51.1
WP_165186413.1\|2795600_2795900_-	DNA-binding protein	NA	NA	NA	NA
WP_165186416.1\|2796093_2796360_+	hypothetical protein	NA	NA	NA	NA
WP_165186418.1\|2796472_2796973_+	hypothetical protein	A0A127KNL4	Pseudomonas_phage	2.0e-23	39.6

DBSCAN-SWA_3

2801009 : 2806475

Pseudomonas_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165186436.1\|2801009_2801216_+	hypothetical protein	W6MVG2	Pseudomonas_phage	5.3e-15	59.4
WP_165186438.1\|2801479_2801653_+	hypothetical protein	NA	NA	NA	NA
WP_165186440.1\|2801680_2801971_+	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	2.2e-27	74.4
WP_165186442.1\|2801967_2802768_+	PD-(D/E)XK nuclease family protein	J7HXJ4	Pseudomonas_phage	5.0e-85	55.4
WP_165186444.1\|2802778_2803993_+	hypothetical protein	J7HXB6	Pseudomonas_phage	7.3e-80	60.2
WP_165186447.1\|2804019_2804721_+	cell division protein FtsK	J7I0T4	Pseudomonas_phage	2.1e-23	44.6
WP_165186449.1\|2804717_2806475_+	AAA family ATPase	H2BD46	Pseudomonas_phage	3.3e-73	33.8

DBSCAN-SWA_4

3641866 : 3651406

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007180615.1\|3641866_3644164_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-168	41.5
WP_006050100.1\|3644160_3644475_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	5.8e-13	44.6
WP_007180614.1\|3645025_3645232_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.4e-23	81.8
WP_007180613.1\|3645506_3646763_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.3e-12	64.8
WP_007180612.1\|3647095_3647665_+	pseudouridine synthase	NA	NA	NA	NA
WP_011489640.1\|3648121_3648316_+	hypothetical protein	NA	NA	NA	NA
WP_007180611.1\|3648461_3648968_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	9.4e-13	39.2
WP_007180610.1\|3649300_3651406_+	elongation factor G	E4ZFJ7	Streptococcus_phage	4.5e-61	26.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LR699555

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

134154 : 191463

uncultured_Mediterranean_phage(21.43%)

protease,transposase,tail,integrase

attL 151945:151961|attR 195617:195633

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165187363.1\|134154_135255_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_165190002.1\|135924_136377_+	hypothetical protein	NA	NA	NA	NA
WP_165190004.1\|136373_136583_+	hypothetical protein	NA	NA	NA	NA
WP_165190006.1\|136610_136886_-	hypothetical protein	NA	NA	NA	NA
WP_165190008.1\|138667_139789_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	4.4e-39	34.8
WP_165190010.1\|139811_140225_-	hypothetical protein	NA	NA	NA	NA
WP_165190012.1\|140296_141655_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_165190014.1\|141665_142451_-	ParA family protein	F0PIG8	Enterococcus_phage	8.5e-13	24.3
WP_165190016.1\|142467_142869_-	hypothetical protein	NA	NA	NA	NA
WP_165190018.1\|143453_143636_+	hypothetical protein	NA	NA	NA	NA
WP_165190020.1\|143723_143966_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_165190022.1\|144002_145271_-	replication protein O	NA	NA	NA	NA
WP_165190156.1\|145538_146396_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_165190024.1\|146519_147704_-	AAA family ATPase	A0A0A8WFQ8	Clostridium_phage	7.3e-08	31.5
WP_165190026.1\|147943_149863_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_165190028.1\|149859_150627_-	hypothetical protein	NA	NA	NA	NA
WP_165190030.1\|151055_151862_+	hypothetical protein	NA	NA	NA	NA
151945:151961	attL	NA	NA	NA	NA
WP_165190032.1\|152620_153016_+	hypothetical protein	A0A2H4J643	uncultured_Caudovirales_phage	5.6e-13	51.1
WP_165190042.1\|153052_158215_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	1.4e-47	22.5
WP_165190044.1\|158211_161067_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	4.0e-36	26.7
WP_165190046.1\|161063_165380_+	restriction endonuclease	A0A1B1IUC6	uncultured_Mediterranean_phage	7.5e-18	26.9
WP_165190048.1\|165363_167334_+	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_165190050.1\|167788_169417_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_165190052.1\|169425_170295_+	AAA family ATPase	NA	NA	NA	NA
WP_165190054.1\|170272_170800_+	hypothetical protein	NA	NA	NA	NA
WP_165190056.1\|170839_171880_-	hypothetical protein	NA	NA	NA	NA
WP_165190058.1\|172239_173259_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_165190060.1\|173427_174273_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_165190062.1\|174426_174888_-	phage virion morphogenesis protein	E5FFH6	Burkholderia_phage	3.7e-56	77.5
WP_165190064.1\|174809_175322_-\|tail	phage tail protein	E5FFH7	Burkholderia_phage	9.0e-64	83.3
WP_165190158.1\|175438_175882_-	hypothetical protein	E5FFH9	Burkholderia_phage	2.9e-42	76.0
WP_165190066.1\|176210_176633_-	hypothetical protein	NA	NA	NA	NA
WP_165190077.1\|176825_178307_-	diguanylate cyclase	G3MA91	Bacillus_virus	1.2e-12	33.1
WP_165190162.1\|179053_179410_-	host attachment protein	NA	NA	NA	NA
WP_165190160.1\|179498_180656_-	alkene reductase	NA	NA	NA	NA
WP_165190079.1\|181215_182043_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_165190081.1\|182185_183451_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.4e-103	51.4
WP_165190083.1\|183879_184008_+	maleylacetate reductase	NA	NA	NA	NA
WP_165190085.1\|185118_185613_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	1.8e-13	35.9
WP_154566746.1\|185703_186138_-	PRC-barrel domain containing protein	NA	NA	NA	NA
WP_165190087.1\|186434_187010_+	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_165190089.1\|187160_187793_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_165190091.1\|188116_188608_+	hypothetical protein	NA	NA	NA	NA
WP_165190093.1\|188628_191463_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	9.0e-121	33.9
195617:195633	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_LR699554

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LR699554_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699554_1

28367-28454

Orphan

Consensus_repeat	Method
AAAGGTGAGCGTTTTCGGGAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR699554_1

>merge|NZ_LR699554|1|28367-28454|CRISPRCasFinder
AAAGGTGAGCGTTTTCGGGAGCAGTTCAACGCGCACTTCACGCAGGATCCCAAGCGCTCCATGCCAAAGGTGAGTGTTTTCGGGAGCA

>NZ_LR699554|1|1|28367-28454|CRISPRCasFinder
AAAGGTGAGCGTTTTCGGGAGCA	GTTCAACGCGCACTTCACGCAGGATCCCAAGCGCTCCATGCC
AAAGGTGAGTGTTTTCGGGAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699554.1\|WP_007178667.1\|29498_30257_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180796
NZ_LR699554.1\|WP_007178670.1\|32564_33290_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_LR699554.1\|WP_165187547.1\|36735_37653_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183045
NZ_LR699554.1\|WP_007178672.1\|34732_35650_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_LR699554.1\|WP_007178663.1\|25877_26420_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699554.1\|WP_007178659.1\|19921_20617_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132881
NZ_LR699554.1\|WP_007178662.1\|25146_25881_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_LR699554.1\|WP_007178666.1\|28673_29420_+\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_LR699554.1\|WP_007178671.1\|33451_34672_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|178031
NZ_LR699554.1\|WP_165187538.1\|20659_22435_-\|phospholipase	unknown	unknown	gnl\|CDD\|197270
NZ_LR699554.1\|WP_165187536.1\|18973_19492_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_LR699554.1\|WP_007178669.1\|31567_32206_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|188314
NZ_LR699554.1\|WP_165187550.1\|37828_39157_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_LR699554.1\|WP_007178665.1\|27449_27815_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_LR699554.1\|WP_007178658.1\|19517_19925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699554.1\|WP_165187545.1\|30368_31328_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_LR699554.1\|WP_165187540.1\|22710_25101_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|340393
NZ_LR699554.1\|WP_007178656.1\|17921_18440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699554.1\|WP_007178673.1\|35807_36707_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_LR699554.1\|WP_165187543.1\|26457_27429_+\|chemotaxis-protein-CheX	unknown	unknown	gnl\|CDD\|379336

Protein	Function_ID	Function_description	E-value
NZ_LR699554.1\|WP_007178667.1\|29498_30257_-\|SDR-family-oxidoreductase	gnl\|CDD\|180796	PRK07023, PRK07023, SDR family oxidoreductase.	1.94775e-133
NZ_LR699554.1\|WP_007178670.1\|32564_33290_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.00031e-46
NZ_LR699554.1\|WP_165187547.1\|36735_37653_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|183045	PRK11233, PRK11233, nitrogen assimilation transcriptional regulator; Provisional.	3.58195e-65
NZ_LR699554.1\|WP_007178672.1\|34732_35650_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.86995e-28
NZ_LR699554.1\|WP_007178659.1\|19921_20617_+\|DNA-alkylation-repair-protein	gnl\|CDD\|132881	cd07064, AlkD_like_1, A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this family, AlkC and AlkD from Bacillus cereus, are distant homologues and are composed of six variant HEAT (Huntington/Elongation/ A subunit/Target of rapamycin) repeats. HEAT motifs are ~45-amino acid sequences that form antiparallel alpha-helices, which are packed by a conserved hyrophobic interface and are tandemly repeated to form superhelical alpha-structures. AlkD and AlkC are specific for removal of 3-methyladenine (3mA) and 7-methylguanine (7mG) from the DNA by base excision repair. Homologues of AlkC and AlkD were also identified in other organisms.	2.89982e-92
NZ_LR699554.1\|WP_007178662.1\|25146_25881_+\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.95069e-12
NZ_LR699554.1\|WP_007178666.1\|28673_29420_+\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	1.66799e-71
NZ_LR699554.1\|WP_007178671.1\|33451_34672_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|178031	PLN02409, PLN02409, serine--glyoxylate aminotransaminase.	3.08932e-151
NZ_LR699554.1\|WP_165187538.1\|20659_22435_-\|phospholipase	gnl\|CDD\|197270	cd09173, PLDc_Nuc_like_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium. Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins, which show high sequence homology to the endonuclease from Salmonella typhimurium and vertebrate phospholipase D6. Nuc and PLD6 belong to the phospholipase D (PLD) superfamily. They contain a short conserved sequence motif, the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which characterizes the PLD superfamily and is essential for catalysis. Nuc and PLD6 utilize a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit. However, proteins in this subfamily have two HKD motifs in a single polypeptide chain.	2.6456e-41
NZ_LR699554.1\|WP_165187536.1\|18973_19492_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.96584e-17
NZ_LR699554.1\|WP_007178669.1\|31567_32206_+\|HD-domain-containing-protein	gnl\|CDD\|188314	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.	6.97693e-08
NZ_LR699554.1\|WP_165187550.1\|37828_39157_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.44958e-61
NZ_LR699554.1\|WP_007178665.1\|27449_27815_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.14816e-41
NZ_LR699554.1\|WP_165187545.1\|30368_31328_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	8.17448e-90
NZ_LR699554.1\|WP_165187540.1\|22710_25101_+\|HAMP-domain-containing-protein	gnl\|CDD\|340393	cd16916, HATPase_CheA-like, Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases. This family includes the cytoplasmic histidine kinase (HK) CheA, a transmembrane receptor which, together with cytoplasmic adaptor protein (CheW), forms the lattice at the core of the chemosensory array that controls the cellular chemotaxis of motile bacteria and archaea. CheA forms a two-component signal transduction system (TCS) with the response regulator CheY. Proteins having this CheA-like HATPase domain generally also have a histidine-phosphotransfer domain, a histidine kinase homodimeric domain, and a regulatory domain; some are hybrid sensor histidine kinases as they contain a REC signal receiver domain.	6.47903e-45
NZ_LR699554.1\|WP_007178673.1\|35807_36707_+\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	1.16417e-26
NZ_LR699554.1\|WP_165187543.1\|26457_27429_+\|chemotaxis-protein-CheX	gnl\|CDD\|379336	pfam13690, CheX, Chemotaxis phosphatase CheX. CheX is very closely related to the CheC chemotaxis phosphatase, but it dimerizes in a different way, via a continuous beta sheet between the subunits. CheC and CheX both dephosphorylate CheY, although CheC requires binding of CheD to achieve the activity of CheX. The ability of bacteria to modulate their swimming behaviour in the presence of external chemicals (nutrients and repellents) is one of the most rudimentary behavioural responses known, but the the individual components are very sensitively tuned.	5.49343e-13

>NZ_LR699554.1|WP_007178665.1|27449_27815_+|response-regulator
MSKILVVDDSSTVRDEVAGFLKKNGLDVDTAVDGKDGLAKLKASPGIKLVISDVNMPNMDGLTMVEKIRGELANKTVNVIMLTTESSPAMKERGKAAGVKGWIVKPFKGDAVLETFRKLAS
>NZ_LR699554.1|WP_165187543.1|26457_27429_+|chemotaxis-protein-CheX
MNMNKPVSKVLVLDDCPAHKEALKRFCDENNLVGVKVAKNRLQSVLRSNIDLGAVLFSERYGGSPEASAEIAIRINAVRPELPIIMRRDNDPGMDDLPEGLRRVVCAAYVAHDMAPLRQVIDEYIFSLDYPNALVRGIADMTQAILGDVFKDLTITCDTPHIVRDRIIFGEVFSLIPLESAWCRGYMMMQAEETPILELLDRHQMIDNTQRGEADFRDLNSVLGEVTNLIWGSFRNRYVGDADAWARSQVQVPLLVNHKHKYISFGSGNPQLCFTYWLKDPKSTRAVKLHQRFVFSLSWSPEDFKEVADDVGAMVEAGELDLF
>NZ_LR699554.1|WP_007178663.1|25877_26420_+|hypothetical-protein
MISVHAKDSFDRIFRKAAQARLPLDAGDLCEIAPIADASVGVSKDTQVVVLTISSIVFRLLLILHFDEDESTRAYYLKDAADERPFQEVFLEICNLCCGAMNQELLRYFPDLGMSTPYVLNARCLPHLHELKPGLLSSYSVTLNGTVRLAATVCVCAYAPIDFVADTSALEETGGELELF
>NZ_LR699554.1|WP_007178662.1|25146_25881_+|chemotaxis-protein
MIQQYVLAVAASSAVTALLAFAAHKLHSAKLTARLHAKAQARIDTLEAAQAGHGAAIAERERAEQELQALTTQLRDELALQTANAEELRAALKAATEDKDQLAHQAQKIAGEAERLKSLGATFERWHEQMISLMTQNNDMHAKNQELSSIVRHVVIVSLNASIEAARAGPAGRGFAVVASEVRALAARSEELSKSYRDSLHRNDLTTTSTFQDIQAGGKMIAASLASVESLANQFHSKLHEVAV
>NZ_LR699554.1|WP_165187540.1|22710_25101_+|HAMP-domain-containing-protein
MTIRHRITLLVVLMFVALSAIGGYAVYQTRGSAGEVRKVTEGVVPSALASADLVSQVKDVQLATMTLVYAPDANMVAQAQDELNKKRASLQQALALQDKDAASHAQKGLVSQANDSLQNYFSAIAETAKMKAEGKNELAQAYLFANVAQYRDELEGIVETLRVEKNREKDEAITTLNATLATTTTAIAAVTGIAIILLTFIGALLYRQITRPLSRMQAMMSEIASSQDFTRRVPVGRLDEIGHSIVAFNGMIEKIQESSAQLKQKTADIQAMLQNMQQGILTVIDGAVIHAEYSAYLEDIFETKDIAGRGLMDLVFADTDIGSDALSQVDAAVHACLGEDCINFAFNQHLLVGEISKRMPDGRVKILDLSWSAITDENDVIVRLMLCVRDVTELRKLAAEASEQRRRLDMIGEILAVSEEKFHHFIESSAGFISENERIIRKHSAADHAAIAELFRNMHTIKGNARTYNLQHLTNVVHETEQSYHELRQPDAGRSWDQEHLMRELTRVREAIESYAKINEQSLGRKGKGQANEAGNSGHYVMVAREHIQHTLSMLEQTNAGELQELQSMRDALRRTLRALGSESVRDALSGVLDSLPSLASELGKPAPSVRVDDNGYRLRGEAGGTLNNVFMHLLRNSMDHGIETAETRSAHGKAPAGSIRIEVGLDSGALQITLSDDGRGLALERIRGIATERGWIGPDDTLSDEAIADFIFRPGFSTAETVTELSGRGVGMDAVRDFLKRANGSIELRFTDDQKGAAYRQFQTIVCLPDSIAVDTLGVEARGEAGALQLDAMAD
>NZ_LR699554.1|WP_165187538.1|20659_22435_-|phospholipase
MNVSVRSYLSPTLVLLAFDWPEGGTREDFLGFAIKRTPGFLATDGQEREASSWLPNRLTFKGAVPDTQKDAPSNEAPIQKFMWWDARIDEADREKSFTYLVYPVIGNPEAPQLLHAQKGECKLSLPAHMEESIGSWFNRAVVSSQAFARKVAALHLAPHAAPSTEQALRLRTWLANDLQEAFALTLDHAQRAASAVYHLTDPLWAIPAFEAFGKKQGKASLAVVYDSHKVSQKGKPPAPSPNQPAVDELGDVATFAPRDKTHIMHDKFIVVNNGNGAASPARVLTGSANFTTEGITEQANVLHLFDSPELATLYSDRAKALAGNPTIAATAKLTPGWSDSIRIGSAQVRVCFSPEEKDSRLQIDTIVDAISKAKHSVVFCLFMPTDAPLREACFAAGDKGLMMFGLVNHISPKSAEAAEEAEKNGQIVSTTALANMELYHRGRDKRDVIDAEYFSPATVPAGFEPELRLFPGEHPPEYAPVIIHHKFLVIDAEGTNPVVYTGSANMSNNSEHFNDENLLEIRDRRIAGTYLAEFLRLYEHYRARALAIRQKKNDDTHERLMLAPDGSWAKKYFIADSPEDKARVALAHGGD
>NZ_LR699554.1|WP_007178659.1|19921_20617_+|DNA-alkylation-repair-protein
MTPDAFAREIKAALAPHADAERALAMRAYMRHHFEFIGVPTPLRRQAVLPVLKALQVENADHLLVYANVLWTMPAREYQYVATDLLARKWKTLALGDIARLLTIAQHASWWDSVDPLAAVVGGVLKAARVEAPQAQAAMDTALQHESLWVRRIAMIHQLGWRGHTDEDRLFGYARALAAESDFFIRKAIGWALRDYARHAPDVVSGFLSASRDLISPLTLREASKHLPPIR
>NZ_LR699554.1|WP_007178658.1|19517_19925_+|hypothetical-protein
MSAKLNEASRRAAENCAHQSHNGTIDFGSVVRALGEAGIESYFTDYRRGEHTYYAPGGETHVIALPLPDVAIANAFDADAVTQAVRGAQSGAVKYAEFVSRTLAAGCVGYFVWITGRQVQYFGRRGEVHVERFPQ
>NZ_LR699554.1|WP_165187536.1|18973_19492_+|winged-helix-turn-helix-transcriptional-regulator
MQGSRQKDNANTPARKKPAADRKKPVSGLESHVGYWLRFVSNHVSHGFQMKVEAHGVTVSEWVLLREIYGSGPTSATALAARTGMSKGTVSKLLARIEAKALLERETVEEDRRNHVVALSASGLKLVPELARLADQNDEEFFGHLPASVKTAIVDAMKNVVAVHGLKAVPIE
>NZ_LR699554.1|WP_007178656.1|17921_18440_+|hypothetical-protein
MHFRQINKNIRRAALALVASLAAASAAHAGNWCEGGVWVDAMLGSYHINPDPNTHFEQFNPGLGVECWLNNQWALTAGGFRNSLRRPSYYGGGVWAPEFAHWGIVRIAAIGGIISGYNYGNWGLGRNHTIGPVVAPIVMVEYKRVGANFIVIPPIPSDDLPFTIGFQLKVKF
>NZ_LR699554.1|WP_007178666.1|28673_29420_+|response-regulator
MSQHILFVGADAGLTAVVGESLRGQGCGVSARPPGAGLKHVVEMERPSLLVLDISAPHGDGLAVLRDLRMGGNDVPVILLSASSKAIDRVIGLELGADDFMSKPADPAELLARIRVLLRRRGAVAPGAPETRPPYRFGRCELNFSARELRRDNEHFALRSSEFALLKIFVNHAMTVLTRMQLNEKLRGNSVLHQGRSLDVSIWRLRRLIEIDPSEPRYVQTVWGRGYVFVPHGELGAAERTVMVAPGA
>NZ_LR699554.1|WP_007178667.1|29498_30257_-|SDR-family-oxidoreductase
MTTSSPIRAIVTGHTRGLGAALAEQLLARGIAVLGLSRSRHATLKARFPALLEEIELELADTARVTQWIATDALRAFASGAQTVLLINNAGMVQPIGPIEGQDAAAIANAVSLNVATPLMLASALAAAAVDATDRRIVHISSGAARNAYAGWSIYCATKAALDHHARAVSLDANRALRICSLAPGVIDTNMQAEIRGSGVEQFPMREKFEDLKRNGQLATPEQCATQLLDYALSDAFGQTPVADIREIARPA
>NZ_LR699554.1|WP_165187545.1|30368_31328_-|GlxA-family-transcriptional-regulator
MPTVAIAIFPGVQALDVAGPVDVFSEANRFIAPDDRYEVTLLGAESAPLRASNGMTLVADATFSEARHAFDLALVAGGPALPDHAPDARVLDWLANVASQCGRYGSICTGAFALGHAGLLDGHNVTTHWQHAAQLAAQFPNARVDFDRIYLRDGPLVTSAGVTAGIDLSLALVAEDHGPQIALAVAKRLVVFAQRQGGQSQFSPYLTAPADETSPVAKVQAHAMERIRESFTVKQLADVAGMSARNFARVFVQETGVTPHEFVERARVDAARKLLESSGAALKAIAYDCGFGTADRMRIVFTKRIGATPMQYRERFRSP
>NZ_LR699554.1|WP_007178669.1|31567_32206_+|HD-domain-containing-protein
MTTIAGIQIPDSMMAREATQLVRDTETELLYHHSRRVFLFGSLAGARKQLKYDAELLYIGAMFHDMGLVAPYSSEHDRFEVDGANAARDFLRRYGIGEDDIDQVWNSIALHTTPGIPQHMKPVIALVTAGVEMDVLGLTYDEFSEHQRHEVIHAHPRGAHFKEGIIDAFAQGTIHKPETTFGNVKADVLAVKDPHYHRENFCTMILGSAWKD
>NZ_LR699554.1|WP_007178670.1|32564_33290_-|GntR-family-transcriptional-regulator
MQNSGFETGIAPSPLMPKVERQRLHDTVVEHIRRFIVEGALEAGKKLNERELCETLGISRTPLREALKVLAAEGLIEISPNRGASVSKMSEAELRETFELMSGLEAFSGELAAERMTAAELSEIKALHYAMLACRTQNDLPGYYSRNQAIHDKINEAARNSALRQTYMAVNRRLQALRFRSNFQVPKWDRAIHDHDEMLKALEARDGKKLSAILRQHLLDKRDAVLQVQSQEAAAASPLKT
>NZ_LR699554.1|WP_007178671.1|33451_34672_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MLKLDFHPAGRHFLQIPGPSPVPDRILRAMSYPTIDHRGPEFGELGLTVLDGIKKIFKTQQPVVIYPASGTGAWEAALSNTLSPGDHVLMFETGHFATLWKKMADSLGLKPEFLGLPGIEGWRRGVQPQMIEERLRADPQHAIKAVCVVHNETSTGVTSDIAAVRHAIDAAGHPALLLVDTISGLACADYRHDEWGVDVTVSGSQKGLMLPPGISFNAISPKAVAASKQASLPRSFWDWAEIVEMNKTGYWPYTPNTNLLYGLSEALEMILGEGLDNVFARHERLAEAARRAVRAWGLEIQCADPAVYSPVLTGVMMPDGVDADAVRKVIYERFDMSLGTGLGKMKGRMFRIGHLGDCNDLMLLATLAGCEMGLRLAGVPLKESGLPAAMEWLSQAATALGLKVAA
>NZ_LR699554.1|WP_007178672.1|34732_35650_-|helix-turn-helix-transcriptional-regulator
MNTRPPAPATHSTETPFGLQSVCHTLSSANANLDRFAWLGDRLAIAVWTRDTEEAETVYERPGHHTLSCYLDGGYRTERQKMPGHYGAPSRLCALPGDHESRWWVRGHMHFMHLYFLPEHFTQRAVQELDREPRELTLADRTYFEDARIASLCQSLANEDWENPDGLLRTNETAHQVLSLLLRAQGVRRTDASLKGGLSVATRRRLRDYIESHLSQTLTLGELAGVAALSEFHLARMFRTSFGLPPAAWIAQQRLERARTLLRTTTLPLAQVAEQCGYANASHFSHRFRESVGVAPTAYRQALAA
>NZ_LR699554.1|WP_007178673.1|35807_36707_+|EamA-family-transporter
MNLSLYISTVLIWGTTWIAIKWQLGDVPPPVSIAWRFWIAALVLFALLRIMRRPIWPPRAAWRFLVAQGLALFCLNFLCFYYAEQVVPSGLVAVVFSTAPLLNSINGRLFMGRPLQPTAIAGALLGLVGIVCLFVQQMAGHLGDHAAWFGLGIAFLGTLCFSAGNLLSSRMQSMGLHPFATNSWAMLIGAGVLTVGSALAGFSFAVEPSARYLGALAYLAIFGSVIGFTAYLMLVGRIGPERAAYCTVLFPIVALAVSTVFEGYQWSALAVVGLLLVVAGNLVAFDLTRRIFVRRVRTS
>NZ_LR699554.1|WP_165187547.1|36735_37653_-|LysR-family-transcriptional-regulator
MDLRQLRYFVKVVECGNVTRASEALHIAQPAISQQMRNLETDLGMQLLERSVHGVAPTAAGQTLYRHAVELLRQADGTRELLRQDAELPQGRVSVAMPSSTTRMVAIPLARTIRDRYPGIALELIEAPSADLAKLIGGGRVELAVVVDAVETRGVASQKLLTEALYLIAWPEFAMPQEPVPIAELARMPLILPSAPNTIRSRVEWALREAGQPCEILFEASSTALLFAAVMAKLGVTILPWTAAHVELDEHKLKLAKVDHPLFSRDLSLCWHDTALLSNAVQKVKATILEVFDSLGKRPEWIGAD
>NZ_LR699554.1|WP_165187550.1|37828_39157_+|MFS-transporter
MAKVIAASTPALKPRRTPLTREQIGGFWAVYSGWVMDGVDSVIYALVLVPALAELLPASGIAATPGNLGMYGSILFALFLIGWGLSFIWGPLADRFGRVKTLAASILIYSVFTGAAAFAHNVWELAAFRLIAGIGVGGEWALAGTYVAESWPEDRRKMGAGYLQTGYYLGFFLAALLNYTIGATYGWRAMFLCGLAPALLAIFTVLKVKEPGQWRKATHGIGQTSAPPVRARRPLLEIFAPAYRRRTLTSASLVGVAIIGLWAGSVYEASAVVTLATRAGIGRVGAVHLASIGAAVLSVGTILGCLAAPWLAERLGRRLALGAYFAGMAVSIVFAFGWVFYLPNGLNLFMVSLLFLGFFGGNFAIFSLWLPEQYPTRIRATAFAFNASVGRLLGAGVNFLLAAAIHWQGSLGLPVAWTAAAFVIGLLILPFAIETRHQTLPE

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Crispr_ID: NZ_LR699554_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699554_2

238855-238928

Orphan

Consensus_repeat	Method
CTGTCGACCAGAGTTGGCGCTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR699554_2

>merge|NZ_LR699554|2|238855-238928|CRISPRCasFinder
CTGTCGACCAGAGTTGGCGCTTTAGCGCCTTACTCTGGTCCCATGCAAAGCGGTCGACCAGAGTTGGCGCTTTA

>NZ_LR699554|2|2|238855-238928|CRISPRCasFinder
CTGTCGACCAGAGTTGGCGCTTTA	GCGCCTTACTCTGGTCCCATGCAAAG
CGGTCGACCAGAGTTGGCGCTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699554.1\|WP_007178834.1\|232625_235367_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_LR699554.1\|WP_165187620.1\|230695_231265_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|376780
NZ_LR699554.1\|WP_007178844.1\|245979_247197_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_LR699554.1\|WP_007178839.1\|240495_240804_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_LR699554.1\|WP_007178846.1\|247739_248186_+\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_LR699554.1\|WP_007178838.1\|239103_240210_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NZ_LR699554.1\|WP_035516903.1\|231362_231824_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_LR699554.1\|WP_007178843.1\|244827_245856_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_LR699554.1\|WP_007178830.1\|228580_230107_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_LR699554.1\|WP_011490537.1\|231880_232624_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_LR699554.1\|WP_007178831.1\|230168_230699_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|376780
NZ_LR699554.1\|WP_007178847.1\|248266_250135_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_LR699554.1\|WP_007178842.1\|243938_244745_+\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_LR699554.1\|WP_007178837.1\|237976_238846_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_LR699554.1\|WP_007178840.1\|240800_241682_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|182567
NZ_LR699554.1\|WP_035516905.1\|241767_243675_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_LR699554.1\|WP_165187621.1\|235535_236885_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_LR699554.1\|WP_007178829.1\|227985_228381_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699554.1\|WP_007178836.1\|236988_237861_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|366780
NZ_LR699554.1\|WP_007178845.1\|247265_247478_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707

Protein	Function_ID	Function_description	E-value
NZ_LR699554.1\|WP_007178834.1\|232625_235367_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_LR699554.1\|WP_165187620.1\|230695_231265_-\|chromate-transporter	gnl\|CDD\|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	3.81325e-30
NZ_LR699554.1\|WP_007178844.1\|245979_247197_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	2.84217e-178
NZ_LR699554.1\|WP_007178839.1\|240495_240804_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	9.55856e-23
NZ_LR699554.1\|WP_007178846.1\|247739_248186_+\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	3.72412e-63
NZ_LR699554.1\|WP_007178838.1\|239103_240210_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	1.46793e-52
NZ_LR699554.1\|WP_035516903.1\|231362_231824_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.73546e-36
NZ_LR699554.1\|WP_007178843.1\|244827_245856_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_LR699554.1\|WP_007178830.1\|228580_230107_+\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_LR699554.1\|WP_011490537.1\|231880_232624_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.2493e-62
NZ_LR699554.1\|WP_007178831.1\|230168_230699_-\|chromate-transporter	gnl\|CDD\|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	4.19872e-30
NZ_LR699554.1\|WP_007178847.1\|248266_250135_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_LR699554.1\|WP_007178842.1\|243938_244745_+\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	4.61933e-160
NZ_LR699554.1\|WP_007178837.1\|237976_238846_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	3.33356e-91
NZ_LR699554.1\|WP_007178840.1\|240800_241682_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|182567	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase.	4.82427e-88
NZ_LR699554.1\|WP_035516905.1\|241767_243675_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_LR699554.1\|WP_165187621.1\|235535_236885_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	4.93585e-127
NZ_LR699554.1\|WP_007178836.1\|236988_237861_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	2.01528e-73
NZ_LR699554.1\|WP_007178845.1\|247265_247478_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	3.00307e-17

>NZ_LR699554.1|WP_007178837.1|237976_238846_-|sulfurtransferase
MPHTHYTTLISATNLAERLAAAPGSVFVIDCRFDLADPEAGEKAYLAGHLPGAHYLHLDRDLSGPKNGQSGRHPLPDRARLVETLESRGLKQGQQVVAYDAQGGMYAARAWWLLRWLGHDAVALLDGGLQAWEAGGYPLTQDAPAQNTGDFKAGAPLSVTVDAQTVERNLGSKERVVVDARAADRYRGENETLDRVGGHIPGALNRFFKDNLTADNRFKPAHTLREEFHALLADTPPEHVILQCGSGVTACVNALAMEVAGLHGAALYAGSWSEWSSDPKRPVATGPNP
>NZ_LR699554.1|WP_007178836.1|236988_237861_+|dienelactone-hydrolase-family-protein
MLKPEIDSLVPHVPFDRRTFIKAALGTGFAAAVLPVSAQTIHTDSDGLEAGEVAVRSGDTLVPAYRAQPKGKTHLPVIIVVHEIFGVHEHIADVCRRFAKQGYLAIAPNLYERQGDPTVYTSMQQLNEQLVSKVPDDQVMGDLDATVAWAGEHGGDLNRLGVNGFCWGGRIAWLYAEHNPRLKAGVAWYGRVTGAKNAMTPANPLDEVAQLHAPVLGLYGLQDQSIPQDTLEQMKQAIAQGPQAGRGSQFVVYDDAGHAFFADYRPSYKKADAEDGWRRALVWFKQHGVA
>NZ_LR699554.1|WP_165187621.1|235535_236885_+|NAD(P)/FAD-dependent-oxidoreductase
MHRFIVVGGGAGGLELATRLGDRYAPHKNKGAVRAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANRRLTLGTVLDDDGAELLPERELEYDTLIIAIGSTTAFFGVKGASEFSLALDTVSQAERFRKRLIAACMRAEHQVHEPVESAPGTPSTDEPRIQVAIVGGGATGVELSAELRNTAQVLSAYGLHKLDPRHDVGIVLIEAGPRILPALQERVSTATAELLTKLGVKLMTSETVAEVAPGVIRTASGKTVRADLTVWAAGIKAPAILSELDGLPVNRLGQLVVRRTLQTEIDDNIFALGDCAACPWPGNERNVPPRAQAAHQQASFLMKALTARLDGRPLPEFTYRDFGSLVSLGHFSAVGNLMGGVIGGNMLIEGLFARFMYMSLYRLHIAALHGYARMVLDTFAHWLRRTTLPRVKLH
>NZ_LR699554.1|WP_007178834.1|232625_235367_+|DNA-polymerase-I
MPEERSLEGKTLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLVGDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLPMAKKLVTVERNCDLTDHIVSIEESLQSQPESRAELREVFTRHGFKTWLREVEIADAVEGPETDVPPALSVDHERHYDTVQTWEQFDAWLETINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVLARLKPWLESVEHKKVGQHLKYDEQVLANYGIEMRGIEHDTLLQSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVADLKVPLVAEVGAGLNWEEAH
>NZ_LR699554.1|WP_011490537.1|231880_232624_-|TIGR00730-family-Rossman-fold-protein
MTKRKVIPSLRSLADQERATAKKARASWQMFTIMAEFIEATEYLSEIRPAVSIYGSARLKPNSPYYKLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELPHEQSGNQWQDISLRFRHFFTRKVTFVKNSDAVIVMPGGFGTLDELAEVLTLIQTKKSRHVPIILVGAEFWEGLLAWFRNSLTPMGLINPADMDLMQVIDDPDQVLEAVLKFYEDREEAEPQPTKSDEDRMFYL
>NZ_LR699554.1|WP_035516903.1|231362_231824_+|LysR-family-transcriptional-regulator
MARNPPPFPALRAFEAAARHQSFTAAANELHVTHGAISRQVAAFETWLGVQVFQRRGKRVRLTDGGRRYLSALQAAVDGLGVALGPLPLLADELLSGRLVVPLAGPRIDARGYWWVARREVAHAPLVEQFCEWQQAQGDQTQENETGSVEATR
>NZ_LR699554.1|WP_165187620.1|230695_231265_-|chromate-transporter
MDHDLTTPEPALARPPTVWEIFGGFLGLGLISFGGALPLARRALVEQRRWLSAEKFTDLLGLCQFLPGGSVINLSVAVGMRFRGVPGALAGLLGLIAGPSLIVIGLGVLYEHTQNDPHVRHLFAGLAAAAAGLLISMAVKILLPLRHKPVAALIAALGFIAIAIMRLPLLPTMLVLTPFSIYIASRKAR
>NZ_LR699554.1|WP_007178831.1|230168_230699_-|chromate-transporter
MNDTLISLAVIFSQLSLLAFGGGNTILPEMQRQVVDVHHWMPASEFSALFALAQAAPGPNLMVVTLVGWHVAGWAGMLVTSVAKFGPSSLVTVLAMHAWERCKDRPWRRYAQLGLVPVTAGVVAASAALIAEASNPTAIAWAITAFTAVMAIKTRIHPLWLLAAGSLIGLTGIGQL
>NZ_LR699554.1|WP_007178830.1|228580_230107_+|AMP-nucleosidase
MNNDTNQRAVQTPANSFPTESFEDATEAVTRLSAIYEANTSFLRDAFARYRRNELFQSRVRACYPFVRVCTEVNTHIDSRRSYGFVAGPGVFETTVTRPDLFGNYYREQLRLLAKNHHVQIEVGVSDQPIPIHFAFAEGIHLEGDLDRERLFLMRDVFDTPDLALLDDRIVNGTYEPLPGEPHPLALFTAARVDFSLHRLKHYTATSPTHCQNYVLYTNYQFYIDEFVKLGRTMMAHTDDEELRAYRSEYTSFVEPGDVVTYNENLGEQAQEGTAPPRLPQMPAYHLKRADGSGITMVNIGVGPSNAKTITDHIAVLRPHAWIMLGHCAGLRNTQRLGDYVLAHGYVREDHVLDDDLPLWVPIPALAEVQVALERAVAQVTQLDGVELKRVMRTGTVASVDNRNWELRDHREPVQRLSQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMADQFYRAQVDQHLQIGVKAMELLRMNGLHRLHSRKLRSFAEVAFQ
>NZ_LR699554.1|WP_007178829.1|227985_228381_-|hypothetical-protein
MKPLLPVAVALALAFGNAAMAAQPVDDTPPPGAPQSANERAGLPDLEKINRPAAEVSSKVEINVPRTPSFYERSANGTEITEYRDKGKPVEINVHSNLGTRYQMSAPLDTSPTVRDNGRASTRLPSVHLTY
>NZ_LR699554.1|WP_007178838.1|239103_240210_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MSNLSNALQLRSVHSQLPVTAYFDEALLTREIDTLFKKGPRYIGHDLMVPEAGNYFALPSESEGRVLVRNQQSQVELLSNVCRHRQAIMLNGRGQTENIVCPLHRWTYDLNGQLLGAPHFADNPCLNLGATPLQNWQGLLFEAQGRDVARDLARLGTKEHFDFSGFMFDHVEVHECNYNWKTFIEVYLEDYHVAPFHPGLGSFVNCDDLTWEFGDWYSVQTVGVHKDLEQPGSPTYRKWHDEVLRFRGGNPPDFGAIWMVYYPGIMIEWYPHVLVVSWLIPRGPQKTTNVVEFYYPEEIALFEREFVEAERAAYMETAREDDEIAERMDAGRRALMNRGESQVGPYQSPMEDGMQHFHEFLRRELGTI
>NZ_LR699554.1|WP_007178839.1|240495_240804_+|exodeoxyribonuclease-VII-small-subunit
MAKTASKDTAATPAEGVDTTPLPENYEAAQAELEGLVARMESGNLSLEESLTAYRRGAALVAFCQQQLEKVEQQVRVLDGETLKPLPMNTAGTAATESGDDL
>NZ_LR699554.1|WP_007178840.1|240800_241682_+|polyprenyl-synthetase-family-protein
MTFEQWMRSVLERVETALEHYLPGEATEPATLHEAMRYAVLGGGKRVRPLLCHAAGELTGARAECLDAAAAALEMIHVYSLVHDDMPCMDDDALRRGKPTVHVKYDEATALLVGDALQSQAFVALTSEVLAPAQQAALVRELALASGSIGMCGGQAIDLASVGHTLTRTQLETMHRMKTGALLRAAVRMGALAGETPDADAMRSLDAYSAAVGLAFQVVDDILDVTTDSATLGKTAGKDAKDGKPTYVSIIGLDASRALAAQLRSDAHAALAPFGARAQRLAELADLVVNRVS
>NZ_LR699554.1|WP_035516905.1|241767_243675_+|1-deoxy-D-xylulose-5-phosphate-synthase
MYDLLKTIDDPAALRRLDRRQLQPLADELRAFVLDSVSQTGGHLSSNLGTVELTIALHYVFDTPHDRIVWDVGHQTYPHKILTGRRDQMHTLRQLGGISGFPKRDESEYDTFGTAHSSTSISAALGMAIASKLQGDNRMGIAVIGDGAMTAGMAFEALNNAGVEDDVPLLVILNDNDMSISPPVGALNRHLARLMSGRFYAAARAGVERVLRVAPPMLDLARKLEEHAKGMIVPATLFEEFGFNYIGPIDGHDLDSLIPTLQNIKELRGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPAEGIKPATTPSKKTYTQVFGEWLCDAAELDARVIGITPAMREGSGMVEFEKRFPDRYFDVGIAEQHAVTFAGGLAAEGMKPVVAIYSTFLQRAYDQLIHDVALQNLPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLYTALQQPNPTAVRYPRGSGTGVATIKQMTALPLGKGEIRRETSQPAGKRIAILAFGTMVAPSLAAAEQLDATVANMRFVKPLDADLIRQLAETHDAIVTVEEGCVMGGAGSACVEALLASGVTRPVLQLGLPDRFIDHGDPAKLLAACGLDAVGITKSIRERFLLSGAVGGQSSVKRVA
>NZ_LR699554.1|WP_007178842.1|243938_244745_+|GTP-cyclohydrolase-I-FolE2
MNQMNPAFVMPDVQSTPDTRQIPIQRVGVKAVRHPLTVRTQGGEVQPTVGTWNLDVHLPADQKGTHMSRFVALLEENKAPLEPATFRTMLAAMLEKLEAEAGRIEVSFPYFVNKTAPVSGVQSLLDYEVTLTGETRNGATRLFLRVQVPVTSLCPCSKKISQYGAHNQRSHVTINAELAGDVAVEELIRIAEEEASCELWGLLKRPDEKFVTERAYENPKFVEDLVRDVAQRLNADERIVAYVLEAENFESIHNHSAYAVIERDKRAG
>NZ_LR699554.1|WP_007178843.1|244827_245856_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MLVLGIESSCDETGLALYDTEHGLLAHALHSQIAMHREYGGVVPELASRDHIRRALPLLEEVMERAGTASGDIDAIAYTQGPGLAGALLVGASVANALAMAWDKPTIGIHHLEGHLLSPLLVDEPPPFPFVALLVSGGHTQLMRVTDVGVYETLGETLDDAAGEAFDKTAKLLGLGYPGGPEVSRMAEFGTPGAVVLPRPMLHSGDLDFSFSGLKTAVLTNAKKLGGANICEQAKADLARGFVDAAVEVLAAKSLAALKKSGLNRLVVAGGVGANRQLREALSAAAKKRNFYVHYPDLSLCTDNGAMIALAGALRLQRWPDQSGKDYAFTVKPRWDLTSLAR
>NZ_LR699554.1|WP_007178844.1|245979_247197_+|NAD(P)/FAD-dependent-oxidoreductase
MESFDIAVIGAGAAGMMCAAVAGQLGRRVVLIDHSQRLAEKIRISGGGRCNFTNLYAGPANYLSANPHFCRSALARYTPRDFMSLLKRHHVTWHEKHKGQLFCDQSSDAVINVLKSECDAGRVAWRTPLSVEQVRQDAEGRFTLDTRSGPIAARALVIATGGLSIPKIGATDFAYRLARQFGHKLIDTRPALVPLTFAAADWEPFSALSGVSLEVQLATGNKKTGAEFNEDLLLTHRGLSGPGVLQISSYWQPGEPIHINLLPEQDATTALLEAKTGTKRQIANLLSEWVPQRLAHVWLEAHQVPAEARVADLPDKTLHRVGEALSRWTLTPNGTEGYRKAEVTRGGVDTRELSSSTMMSARAPGLYFIGEAVDVTGWLGGYNFQWAWASGVAAGQAAAEYVQGA
>NZ_LR699554.1|WP_007178845.1|247265_247478_+|30S-ribosomal-protein-S21
MTTIRVKDNEPFEVAMRRFKRTMEKTGLLTELRAREFYEKPTAERKRKKAAAVKRHFKRLRGQMLPKKFY
>NZ_LR699554.1|WP_007178846.1|247739_248186_+|GatB/YqeY-domain-containing-protein
MSLKDRINDDMKAAMRARETERLGTIRLLLAAIKQREVDERITLDDTAITAVIDKMIKQRKDSISQFEAAGRTDLADKEKAELAILSAYMPEQMSEAEIVAEVQAAVAQTGAAGPQDMGKVMGVLKPKLAGRADMTAVSAQVKAALAK
>NZ_LR699554.1|WP_007178847.1|248266_250135_+|DNA-primase
MIPPSFLQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLMEHVGSSFPEAVNELAQSVGLTVPNEPSPGYGGGGSGGYAPAASKAVTTALSDVMQTACDFYRKQLRSAPVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEAAFPNYRDDSLVESGLVIVSEKSDAQGQNRRYDRFRERVMFPIRNVKGQVIGFGGRVLDGGEPKYLNSPETPLFNKGSELYGLFEARLAIREQHYVLVVEGYMDVVALAQLGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTIRFLFLPAEHDPDSYVREYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDAKPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTGIEEKTLRNLVMHPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARALGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERIVGEELKAAILKMRYDAYCDRLEQLSRQSRHTPEEFAELSELNRKRADMKRRLGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_LR699553.1	2432319-2432344	2	0.923
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_LR699553.1	3825957-3825982	2	0.923

1. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to position: 2432319-2432344, mismatch: 2, identity: 0.923

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactccggtcccatgcacag	Protospacer
***********.*********** **

2. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to position: 3825957-3825982, mismatch: 2, identity: 0.923

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgcgttactccggtcccatgcaaag	Protospacer
**** ******.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1258621-1258646	2	0.923
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1258669-1258694	2	0.923
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1263290-1263315	2	0.923
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1263338-1263363	2	0.923
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	865558-865583	3	0.885
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	870238-870263	3	0.885
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1040786-1040811	4	0.846
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	601884-601909	4	0.846
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1079716-1079741	5	0.808
NZ_LR699554_2	2.1\|238879\|26\|NZ_LR699554\|CRISPRCasFinder	238879-238904	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1084396-1084421	5	0.808

1. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 2, identity: 0.923

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactccgatcccatgcaaag	Protospacer
***********.*.************

2. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 2, identity: 0.923

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactccgatcccatgcaaag	Protospacer
***********.*.************

3. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 2, identity: 0.923

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactccgatcccatgcaaag	Protospacer
***********.*.************

4. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 2, identity: 0.923

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactccgatcccatgcaaag	Protospacer
***********.*.************

5. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 3, identity: 0.885

-gcgccttactctggtcccatgcaaag	CRISPR spacer
agcg-cttactctggtcccatgcaata	Protospacer
 *** ******************** .

6. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 3, identity: 0.885

-gcgccttactctggtcccatgcaaag	CRISPR spacer
agcg-cttactctggtcccatgcaata	Protospacer
 *** ******************** .

7. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 4, identity: 0.846

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactctggtcccatgcctga	Protospacer
**********************  ..

8. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 4, identity: 0.846

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactctggtcccatgcctga	Protospacer
**********************  ..

9. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 5, identity: 0.808

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactctggtcccataccgct	Protospacer
********************.* .

10. spacer 2.1|238879|26|NZ_LR699554|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 5, identity: 0.808

gcgccttactctggtcccatgcaaag	CRISPR spacer
gcgccttactctggtcccataccgct	Protospacer
********************.* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1708669 : 1714815

Lake_Baikal_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165188385.1\|1708669_1709923_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	7.4e-35	38.0
WP_007177253.1\|1709985_1710432_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.1e-49	75.0
WP_007177254.1\|1710459_1710834_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.3e-22	50.9
WP_007177255.1\|1710841_1711165_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	6.3e-23	50.0
WP_007177256.1\|1711188_1713063_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.1e-95	41.4
WP_007177257.1\|1713120_1713453_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_007177258.1\|1713678_1714815_+	homocitrate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	8.6e-06	35.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_LR699556

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 80495

Leptospira_phage(16.67%)

integrase,transposase

attL 18921:18938|attR 60108:60125

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165187048.1\|0_1629_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.5e-61	34.2
WP_165190169.1\|3726_4320_+	hypothetical protein	NA	NA	NA	NA
WP_165190171.1\|4807_5590_+	hypothetical protein	NA	NA	NA	NA
WP_165190301.1\|5682_6312_-	hypothetical protein	NA	NA	NA	NA
WP_165190173.1\|6421_6769_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007176182.1\|7056_7893_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-76	57.2
WP_039339357.1\|7889_8936_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.6e-75	45.3
WP_165190175.1\|9528_9849_-	hypothetical protein	NA	NA	NA	NA
WP_165190177.1\|10113_11544_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	4.5e-52	30.4
WP_165190179.1\|11691_12375_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_165190181.1\|12390_13728_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_165190183.1\|13771_14686_-	UDP-3-O-acyl N-acetylglycosamine deacetylase	NA	NA	NA	NA
WP_165190185.1\|14685_22344_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	1.7e-28	31.9
18921:18938	attL	NA	NA	NA	NA
WP_165190187.1\|22340_23876_-	LTA synthase family protein	NA	NA	NA	NA
WP_165190189.1\|23876_24671_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_165190191.1\|24663_25869_-	capsular biosynthesis protein	NA	NA	NA	NA
WP_165190193.1\|26253_27696_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_165190195.1\|27802_28450_-	ABC transporter ATP-binding protein	Q66093	Chlorella_virus	4.9e-06	26.3
WP_165190197.1\|28446_29250_-	ABC transporter permease	NA	NA	NA	NA
WP_165190199.1\|29252_30407_-	hypothetical protein	NA	NA	NA	NA
WP_165190201.1\|30603_35886_-	glycosyltransferase	NA	NA	NA	NA
WP_165190203.1\|35962_36943_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_165190205.1\|36998_38306_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_165190207.1\|38355_39552_-	polysaccharide export protein	NA	NA	NA	NA
WP_165190303.1\|39670_40822_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_165190209.1\|40818_42681_+	capsular biosynthesis protein	NA	NA	NA	NA
WP_165190165.1\|43430_45098_+	hypothetical protein	Q6UKA1	Burkholderia_virus	1.9e-70	36.6
WP_165190305.1\|45615_46329_-	replication initiation protein	NA	NA	NA	NA
WP_165190211.1\|46911_47268_-	hypothetical protein	NA	NA	NA	NA
WP_165190213.1\|48782_49118_+	hypothetical protein	NA	NA	NA	NA
WP_165190215.1\|49104_49926_+	AAA family ATPase	Q8JL10	Natrialba_phage	3.0e-16	34.6
WP_165190217.1\|49918_50800_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	1.0e-14	35.7
WP_165190219.1\|51228_51384_+	hypothetical protein	NA	NA	NA	NA
WP_165190221.1\|51901_52174_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_165190223.1\|52170_52470_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_165190243.1\|52595_54491_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_165190245.1\|54722_54920_-	hypothetical protein	NA	NA	NA	NA
WP_165190307.1\|55304_55538_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_165190247.1\|56416_57367_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	2.1e-18	29.8
WP_165190309.1\|57341_57611_-	hypothetical protein	NA	NA	NA	NA
WP_165190167.1\|58201_58444_-	hypothetical protein	NA	NA	NA	NA
WP_165190249.1\|58412_59627_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A167RG65	Powai_lake_megavirus	2.3e-25	29.7
WP_165190251.1\|59866_62038_+	cellulose synthase	NA	NA	NA	NA
60108:60125	attR	NA	NA	NA	NA
WP_165190253.1\|62049_64176_+	glycosyl transferase family protein	NA	NA	NA	NA
WP_165190311.1\|64211_64997_+	hypothetical protein	NA	NA	NA	NA
WP_165190255.1\|64993_67846_+	hypothetical protein	NA	NA	NA	NA
WP_165190257.1\|67858_68542_+	cell division protein FtsQ	NA	NA	NA	NA
WP_165190259.1\|68553_69939_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	8.1e-59	34.4
WP_165190261.1\|69833_71006_+	hypothetical protein	NA	NA	NA	NA
WP_165190263.1\|71002_72016_+	twin-arginine translocation pathway signal	NA	NA	NA	NA
WP_165190265.1\|73292_74579_+	HNH endonuclease	NA	NA	NA	NA
WP_165190267.1\|74813_76595_+	flagellin	NA	NA	NA	NA
WP_165190269.1\|76741_78562_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_165190271.1\|78583_78883_+	flagellar protein FliT	NA	NA	NA	NA
WP_165190273.1\|78969_79158_-	hypothetical protein	NA	NA	NA	NA
WP_165190275.1\|79469_80495_+\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR699553

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LR699555

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_LR699554

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_LR699556

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection