CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR739068	Pseudomonas aeruginosa strain PcyII-29 isolate PcyII-29 chromosome PcyII-29	3 crisprs	csa3,DEDDh,cas3,WYL,DinG	3	11	8	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR739068_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR739068_1

347830-347943

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR739068_1

>merge|NZ_LR739068|1|347830-347943|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_LR739068|1|1|347830-347943|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR739068.1\|WP_003084339.1\|357610_358303_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LR739068.1\|WP_003112938.1\|339417_340170_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_LR739068.1\|WP_003118763.1\|353733_354753_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_LR739068.1\|WP_003107781.1\|336445_337507_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LR739068.1\|WP_003084320.1\|354772_355525_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739068.1\|WP_003084290.1\|340210_341569_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_LR739068.1\|WP_003084299.1\|343120_344224_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LR739068.1\|WP_003112945.1\|357113_357608_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_LR739068.1\|WP_003112942.1\|352515_353019_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_LR739068.1\|WP_003112941.1\|351484_352537_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_LR739068.1\|WP_003084327.1\|356293_356848_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739068.1\|WP_003107783.1\|335719_336385_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LR739068.1\|WP_003158441.1\|348986_351374_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_LR739068.1\|WP_003084303.1\|345794_346949_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_LR739068.1\|WP_003118762.1\|353123_353735_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_LR739068.1\|WP_003112937.1\|337762_339139_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_LR739068.1\|WP_003104505.1\|334678_335557_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_LR739068.1\|WP_003118141.1\|344642_345740_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LR739068.1\|WP_003084297.1\|341634_343005_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_LR739068.1\|WP_003118764.1\|355573_356272_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274

Protein	Function_ID	Function_description	E-value
NZ_LR739068.1\|WP_003084339.1\|357610_358303_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_LR739068.1\|WP_003112938.1\|339417_340170_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_LR739068.1\|WP_003118763.1\|353733_354753_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NZ_LR739068.1\|WP_003107781.1\|336445_337507_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_LR739068.1\|WP_003112945.1\|357113_357608_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_LR739068.1\|WP_003084290.1\|340210_341569_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_LR739068.1\|WP_003084299.1\|343120_344224_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_LR739068.1\|WP_003112941.1\|351484_352537_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_LR739068.1\|WP_003107783.1\|335719_336385_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.86557e-09
NZ_LR739068.1\|WP_003158441.1\|348986_351374_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_LR739068.1\|WP_003084303.1\|345794_346949_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_LR739068.1\|WP_003118762.1\|353123_353735_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_LR739068.1\|WP_003112937.1\|337762_339139_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_LR739068.1\|WP_003104505.1\|334678_335557_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_LR739068.1\|WP_003118141.1\|344642_345740_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_LR739068.1\|WP_003084297.1\|341634_343005_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_LR739068.1\|WP_003118764.1\|355573_356272_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78

>NZ_LR739068.1|WP_003084303.1|345794_346949_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_LR739068.1|WP_003118141.1|344642_345740_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVISKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_LR739068.1|WP_003084299.1|343120_344224_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_LR739068.1|WP_003084297.1|341634_343005_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_LR739068.1|WP_003084290.1|340210_341569_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_LR739068.1|WP_003112938.1|339417_340170_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_LR739068.1|WP_003112937.1|337762_339139_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_LR739068.1|WP_003107781.1|336445_337507_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_LR739068.1|WP_003107783.1|335719_336385_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_LR739068.1|WP_003104505.1|334678_335557_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYNITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_LR739068.1|WP_003158441.1|348986_351374_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLAVAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPTNGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWKGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTEHRETRADIVRTAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_LR739068.1|WP_003112941.1|351484_352537_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_LR739068.1|WP_003112942.1|352515_353019_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_LR739068.1|WP_003118762.1|353123_353735_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_LR739068.1|WP_003118763.1|353733_354753_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_LR739068.1|WP_003084320.1|354772_355525_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_LR739068.1|WP_003118764.1|355573_356272_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_LR739068.1|WP_003084327.1|356293_356848_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_LR739068.1|WP_003112945.1|357113_357608_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_LR739068.1|WP_003084339.1|357610_358303_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NZ_LR739068_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR739068_2

1522234-1523041

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTAAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAA	CRT

13 spacers

The CRISPR arrays of NZ_LR739068_2

>merge|NZ_LR739068|2|1522234-1523041|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTAAGAAAAATCGGGGCTTTCTTGATATCCGTCCAAGCCTGTTCACTGCCGTATAGGCAGCTAAGAAAAGGCACGCATTGCCTTGAAAGGCGTTCTCTTCGTTCACTGCCGTATAGGCAGCTAAGAAATATGATCATGCCCCGTCCTCCGGCTCCAATACGTTCACTGCCGTATAGGCAGCTAAGAAATGAAGGCCAACCCGCAAGTCAGCAAGGGCATCGTTCACTGCCGTATAGGCAGCTAAGAAAAGGTTCGTGGCGGACCGGAAAGACCTCAACCGGTTCACTGCCGTATAGGCAGCTAAGAAACTGGACGCAAGCAAGATCGTAGGGCGCTGCCCGTTCACTGCCGTATAGGCAGCTAAGAAAACCACCAAGATGGTCCAGGCCGTGCGTTCGATGTTCACTGCCGTATAGGCAGCTAAGAAAGGCCAACCAGATCGTCTACACCGCCAACGTGAGTTCACTGCCGTATAGGCAGCTAAGAAATTGATGGGTTTGTACTCAGGCCCGGAAAACTCGTTCACTGCCGTATAGGCAGCTAAGAAAATCAAGGTCAACCTGGGCTCCGGCGCCGGCGGGTTCACTGCCGTATAGGCAGCTAAGAAAAGGTCTTCGAACTCGAACAGCTTCGCGAACTGGTTCACTGCCGTATAGGCAGCTAAGAAATGTGTACCCCTGCGCGTGGAGCGCGGGGCGACGTTCACTGCCGTATAGGCAGCTAAGAAAGTCATGGGCGAGCTCTACGCCAACCCGCAAGCGTTCACTGCCGTATAGGCAGCTAAGAAA

>NZ_LR739068|2|1|1522234-1523041|PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAA	AATCGGGGCTTTCTTGATATCCGTCCAAGCCT
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGCACGCATTGCCTTGAAAGGCGTTCTCTTC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TATGATCATGCCCCGTCCTCCGGCTCCAATAC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGTTCGTGGCGGACCGGAAAGACCTCAACCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC
GTTCACTGCCGTATAGGCAGCTAAGAAA	ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	GGCCAACCAGATCGTCTACACCGCCAACGTGA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTGATGGGTTTGTACTCAGGCCCGGAAAACTC
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGTCTTCGAACTCGAACAGCTTCGCGAACTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTCATGGGCGAGCTCTACGCCAACCCGCAAGC
GTTCACTGCCGTATAGGCAGCTAAGAAA

>NZ_LR739068|2|2|1522234-1523041|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAA	AATCGGGGCTTTCTTGATATCCGTCCAAGCCT
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGCACGCATTGCCTTGAAAGGCGTTCTCTTC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TATGATCATGCCCCGTCCTCCGGCTCCAATAC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGTTCGTGGCGGACCGGAAAGACCTCAACCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC
GTTCACTGCCGTATAGGCAGCTAAGAAA	ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	GGCCAACCAGATCGTCTACACCGCCAACGTGA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTGATGGGTTTGTACTCAGGCCCGGAAAACTC
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGTCTTCGAACTCGAACAGCTTCGCGAACTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTCATGGGCGAGCTCTACGCCAACCCGCAAGC
GTTCACTGCCGTATAGGCAGCTAAGAAA

>NZ_LR739068|2|1|1522234-1523041|CRT
GTTCACTGCCGTATAGGCAGCTAAGAAA	AATCGGGGCTTTCTTGATATCCGTCCAAGCCT
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGCACGCATTGCCTTGAAAGGCGTTCTCTTC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TATGATCATGCCCCGTCCTCCGGCTCCAATAC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGTTCGTGGCGGACCGGAAAGACCTCAACCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC
GTTCACTGCCGTATAGGCAGCTAAGAAA	ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	GGCCAACCAGATCGTCTACACCGCCAACGTGA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTGATGGGTTTGTACTCAGGCCCGGAAAACTC
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGGTCTTCGAACTCGAACAGCTTCGCGAACTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTCATGGGCGAGCTCTACGCCAACCCGCAAGC
GTTCACTGCCGTATAGGCAGCTAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR739068.1\|WP_003119370.1\|1512372_1512702_-\|GlpM-family-protein	unknown	unknown	gnl\|CDD\|284382
NZ_LR739068.1\|WP_003092166.1\|1517168_1518008_-\|aquaporin	unknown	unknown	gnl\|CDD\|238204
NZ_LR739068.1\|WP_003092161.1\|1518806_1520291_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NZ_LR739068.1\|WP_003092157.1\|1523837_1524260_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739068.1\|WP_003104350.1\|1528795_1530289_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|130783
NZ_LR739068.1\|WP_003092173.1\|1514650_1515406_-\|DeoR/GlpR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
NZ_LR739068.1\|WP_003092155.1\|1524358_1524889_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NZ_LR739068.1\|WP_003092168.1\|1515611_1517129_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_LR739068.1\|WP_003104352.1\|1530304_1531201_+\|3-hydroxyisobutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|130753
NZ_LR739068.1\|WP_003122160.1\|1527740_1528664_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380391
NZ_LR739068.1\|WP_003113065.1\|1521648_1521963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739068.1\|WP_003092150.1\|1526251_1527430_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_LR739068.1\|WP_003092159.1\|1520486_1521272_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_LR739068.1\|WP_003098462.1\|1511369_1512356_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_LR739068.1\|WP_003104354.1\|1531302_1533189_+\|propionyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|341271
NZ_LR739068.1\|WP_003098459.1\|1518272_1518743_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_LR739068.1\|WP_003104346.1\|1527437_1527614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739068.1\|WP_003092152.1\|1525247_1525886_-\|efflux-system-transcriptional-repressor-NalD	unknown	unknown	gnl\|CDD\|182177
NZ_LR739068.1\|WP_003098460.1\|1512834_1514373_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NZ_LR739068.1\|WP_003092153.1\|1525071_1525269_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|238219

Protein	Function_ID	Function_description	E-value
NZ_LR739068.1\|WP_003119370.1\|1512372_1512702_-\|GlpM-family-protein	gnl\|CDD\|284382	pfam06942, GlpM, GlpM protein. This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa.	2.61005e-48
NZ_LR739068.1\|WP_003092153.1\|1525071_1525269_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	8.29036e-11
NZ_LR739068.1\|WP_003092161.1\|1518806_1520291_+\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_LR739068.1\|WP_003104350.1\|1528795_1530289_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|130783	TIGR01722, Methylmalonate-semialdehyde_dehydrogenase, methylmalonic acid semialdehyde dehydrogenase. Involved in valine catabolism, methylmalonate-semialdehyde dehydrogenase catalyzes the irreversible NAD+- and CoA-dependent oxidative decarboxylation of methylmalonate semialdehyde to propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase has been characterized in both prokaryotes and eukaryotes, functioning as a mammalian tetramer and a bacterial homodimer. Although similar in monomeric molecular mass and enzymatic activity, the N-terminal sequence in P.aeruginosa does not correspond with the N-terminal sequence predicted for rat liver. Sequence homology to a variety of prokaryotic and eukaryotic aldehyde dehydrogenases places MMSDH in the aldehyde dehydrogenase (NAD+) superfamily (pfam00171), making MMSDH's CoA requirement unique among known ALDHs. Methylmalonate semialdehyde dehydrogenase is closely related to betaine aldehyde dehydrogenase, 2-hydroxymuconic semialdehyde dehydrogenase, and class 1 and 2 aldehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus. [Energy metabolism, Amino acids and amines].	0
NZ_LR739068.1\|WP_003092173.1\|1514650_1515406_-\|DeoR/GlpR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	6.60771e-110
NZ_LR739068.1\|WP_003092155.1\|1524358_1524889_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	2.18545e-52
NZ_LR739068.1\|WP_003092168.1\|1515611_1517129_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_LR739068.1\|WP_003104352.1\|1530304_1531201_+\|3-hydroxyisobutyrate-dehydrogenase	gnl\|CDD\|130753	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase. 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). [Energy metabolism, Amino acids and amines].	9.97135e-158
NZ_LR739068.1\|WP_003122160.1\|1527740_1528664_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|380391	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain. This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included is MmsR, a bacterial transcriptional regulator thought to positively regulate the expression of the mmsAB operon. The mmsAB operon contains two structural genes involved in valine metabolism: mmsA which encodes methylmalonate-semialdehyde dehydrogenase, and mmsB which encodes 3-hydroxyisobutyrate dehydrogenase. The cupin domain of members of this subfamily does not contain a metal binding site.	3.4378e-23
NZ_LR739068.1\|WP_003092166.1\|1517168_1518008_-\|aquaporin	gnl\|CDD\|238204	cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.	1.2092e-74
NZ_LR739068.1\|WP_003092150.1\|1526251_1527430_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.83676e-119
NZ_LR739068.1\|WP_003092159.1\|1520486_1521272_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.55636e-94
NZ_LR739068.1\|WP_003098462.1\|1511369_1512356_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.15496e-24
NZ_LR739068.1\|WP_003104354.1\|1531302_1533189_+\|propionyl-CoA-synthetase	gnl\|CDD\|341271	cd05967, PrpE, Propionyl-CoA synthetase (PrpE). EC 6.2.1.17: propanoate:CoA ligase (AMP-forming) or propionate#CoA ligase (PrpE) catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of Salmonella enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency.	0
NZ_LR739068.1\|WP_003098459.1\|1518272_1518743_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.77717e-78
NZ_LR739068.1\|WP_003092152.1\|1525247_1525886_-\|efflux-system-transcriptional-repressor-NalD	gnl\|CDD\|182177	PRK09975, PRK09975, DNA-binding transcriptional regulator EnvR; Provisional.	8.64954e-35
NZ_LR739068.1\|WP_003098460.1\|1512834_1514373_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0

>NZ_LR739068.1|WP_003113065.1|1521648_1521963_+|hypothetical-protein
MAKPNDTSNPEVTESSPRFVPLLPTSQADMCPRSATLYVDTHALPTHLFDNAKVRLRSAINILAMTRLLDEKEEPGGTLAYINGALLSLLSDALSEIEAGHPSL
>NZ_LR739068.1|WP_003092159.1|1520486_1521272_+|PhzF-family-phenazine-biosynthesis-protein
MQLEFHQVDAFSSRPFSGNPAVVYRLDAWLADELMQMIATEHNLSETAFVVREGEAWRIRWFTPSVEVALCGHATLAAAHVLFEVYDEPGERLEFISRSGALRVNREDERLVLDFPAQYPSEVGSTVELEQALGLPPVDVLGSTDKLLVLLESEEAVRACRPDFAALARLPWRGVIVTARGLQKDFVSRFFAPAMGVDEDPVTGSAHCSLIPYWAQRLNKLSLTAQQCSARGGELWCRLEGERVSIAGHAVLVASGRIRLS
>NZ_LR739068.1|WP_003092161.1|1518806_1520291_+|glycerol-kinase-GlpK
MSHYLLAIDQGTTSSRAIVFSAQGLPVASCQQEFKQYFPKDGWVEHDGEEIWLTTLQVCRDALARKGLRAADIAAIGITNQRETTLVWDAASGDLIHPAIVWQDRRTADYCAELKAAGHEANVSARTGLLIDPYFSATKLRWILDNVPGARQRAERGELRFGTVDCFLLWRLTGGRSHRTDATNASRTLLFNIHSQDWDEELLALFEIPRSLLPEVLDCAAEFGVSEPSLLGAAIPVLGMAGDQQAALIGQACFQPGMVKSTYGTGCFMIQNTGEQPVTSKNRLLTTVGYRLDGKVSYAVEGSIFVAGAAVQWLRDGIKLIDHAHESEALAIQAGDSNGVYLVPAFTGLGAPYWDPKARGAIFGLTRDTGIKEIVTAGLQSVCYQTRDLLEAMRQDGTPPSALRVDGGMVVNNWVMQFLTDILGVTVERPEVTETTALGVAYMAGLKAGFYRDLDDIASHWHLQRRFAAHMAEERRGELYAGWQNAVRRVRSEA
>NZ_LR739068.1|WP_003098459.1|1518272_1518743_+|Cys-tRNA(Pro)-deacylase
MTPAIDLLKKARAAHKVLSYSHDPKAPSYGLEAAEKLGLDPQRVFKTLLAATEKGELLVAVVPVIGSLDLKALAHAAGAKKADMADPQAAQRATGYLVGGISPLGQKKRLRTFIDESARQYPSIHVSAGRRGLEVELAAEVLAQLTQGSFAAIGRE
>NZ_LR739068.1|WP_003092166.1|1517168_1518008_-|aquaporin
MTTAAPTPSLFGQCLAEFLGTALLIFFGTGCVAALKVAGASFGLWEISIIWGVGVSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRGPLAPLLIGLLIAVIGSAMGPLTGFAMNPARDFGPKLMTYLAGWGPIAFTGGREIPYFLVPIFAPILGACLGAGGYRVLIARHLPSAAAPAEAEPEKVRAS
>NZ_LR739068.1|WP_003092168.1|1515611_1517129_-|glycerol-kinase-GlpK
MTDKHNKKYVVALDQGTTSSRAIVFDRDANVVSQAQREFAQFYPQAGWVEHDPMEIWATQSSTLVEALAQASIEHDQVAAIGITNQRETTVVWDRHSGRPIHNAIVWQCRRSAAICAQLKRDGLEDYIRETTGLVTDPYFSGTKLKWILDNVEGARERARNGDLLFGTIDTWLIWKLTEGKVHVTDYTNASRTMLFNIHSLDWDARMLEVLDIPRSMLPEVRNSSEVYGNARIGGVGGGELPIAGIAGDQQAALFGQMCVEPGQAKNTYGTGCFLLMHTGDKAVKSTHGLLTTIACGPRGEVGYALEGAVFNGGSTVQWLRDELKVINDSFDSEYFATKVKDSNGVYLVPAFTGLGAPYWDPYARGAVFGLTRGVKADHLIRATLESIAYQTRDVLDAMQRDAGERLRALRVDGGAVANNFLMQFQADILGTRVERPVMRETTALGAAYLAGLACGFWSSLDELKSKAVIERVFEPECDEPRREKLYAGWKKAVERTRGWDDGEL
>NZ_LR739068.1|WP_003092173.1|1514650_1515406_-|DeoR/GlpR-family-transcriptional-regulator
MNLPPRQQSIIEEVRERGYLSIEEMAQMFAVTPQTIRRDINQLAEQGLLRRYHGGAAYDSSIENTAYTMRADQMRDEKQRIAEAVASLVPDNASLFINIGTTTEAIARALLNHRNLKIITNNLHVAATLSAKEDFEVLVAGGTVRSDGGIVGQAAVDFIQQFRVDFALVGISGIDEDGSLLDFDYQEVRVSQAIIDNARQVFLAADSSKFGRNAVVRLGPISLVNRVISDSPPPAAIARLMAQHKVHLDLV
>NZ_LR739068.1|WP_003098460.1|1512834_1514373_-|glycerol-3-phosphate-dehydrogenase
MSQAHTPSAPLAEVYDVAVVGGGINGVGIAADAAGRGLSVFLCEQHDLAQHTSSASSKLIHGGLRYLEHYEFRLVREALAEREVLLAKAPHIVKPLRFVLPHRPHLRPAWMIRAGLFLYDHLGKREKLPASRGLRFTGSSPLKAEIRRGFEYSDCAVDDARLVVLNAISAREHGAHVHTRTRCVSARRSKGLWHLHLERSDGSLYSIRARALVNAAGPWVARFIQDDLKQKSPYGIRLIQGSHIIVPKLYEGEHAYILQNEDRRIVFAIPYLDRFTMIGTTDREYQGDPAKVAISEEETAYLLQVVNAHFKQQLAAADILHSFAGVRPLCDDESDEPSAITRDYTLSLSAGNGEPPLLSVFGGKLTTYRKLAESALTQLQPFFANLGPAWTAKAPLPGGEQMQSVEALTEQLANRYAWLDRELALRWARTYGTRVWRLLDGVNGEADLGEHLGGGLYAREVDYLCKHEWAQDAEDILWRRSKLGLFLSPSQQVRLGQYLQSEHPHRPRVHAA
>NZ_LR739068.1|WP_003119370.1|1512372_1512702_-|GlpM-family-protein
MFKALIGAAVVVLLAVLSKTRNYYIAGLVPLFPTFALIAHYIVGKGRSLDDLKTTIVFGMWSIIPYFVYLAALYLLVERFRLETSLALAALAWLVAASVLVGLWVRLHA
>NZ_LR739068.1|WP_003098462.1|1511369_1512356_+|alpha/beta-hydrolase
MRAFIFLAALLCSLSSFAAARCDARVPTETVELGDVRLAYQSIGRDSDPALLLVMGLGGQLIHWPDEVVSALCEQGFRVIRYDNRDVGLSAWNVPVPSSRLTYEVVRYRLGLPVSAPYTLTDMAGDALHLLDALDIPQAHVLGASMGGMIAQHIADMAPQRLLSLTLVMTSSGAEGLPAPSESLLRLLARREAASREQAVEQQADLLAALGSPEVRDDRQQLLLQAARSYDRAFNPEGVQRQLLAILAEPSRVPLLNRLQVPTLVIHGTADPLLPVMHGVHVAAHIRGSELKLIPGLAHRFQEAFKEPLLAAVVPYLKAHRQASVVQL
>NZ_LR739068.1|WP_003092157.1|1523837_1524260_-|hypothetical-protein
MFPILRPLLHTAALACALPALAADPQPASGGWAQPDPAPIGYAVLNVSRERVESGTACDVGLYVHDELVGNLQPGASLALNLQPGAVDVRLAPNGPGDACRNGMTILAGQTLTLRAGEIRNLRIALGAGGLYLAPVADGY
>NZ_LR739068.1|WP_003092155.1|1524358_1524889_-|cytochrome-b
MSIRRYSPSQIALHWLSAVAVLLIIALPYGADFFAGLLGGKGNVFTLHKSLGVAVLLLTLTRLALRRVQGVPDTLEGNPDWQRAAAKAGHFLLYAVLIVMPLSGMLAGKRPLDLFWLVQIGPFDLPEAFKAFAGGTHVTVQYLLFALILGHAAAAIWHHRVQKDDVLRAMLPQRGA
>NZ_LR739068.1|WP_003092153.1|1525071_1525269_+|heavy-metal-associated-domain-containing-protein
MQVFKVQGMTCGHCVRAITHAVQAKDSAADVQVDLGAGEVRVASRLDSTQVLEAIREEGYGAELA
>NZ_LR739068.1|WP_003092152.1|1525247_1525886_-|efflux-system-transcriptional-repressor-NalD
MRRTKEDSEKTRTAILLAAEELFLEKGVSHTSLEQIARAAGVTRGAVYWHFQNKAHLFNEMLNQVRLPPEQLTERLSGCDGSDPLRSLYDLCLEAVQSLLTQEKKRRILTILMQRCEFTEELREAQERNNAFVQMFIELCEQLFARDECRVRLHPGMTPRIASRALHALILGLFNDWLRDPRLFDPDTDAEHLLEPMFRGLVRDWGQASSAP
>NZ_LR739068.1|WP_003092150.1|1526251_1527430_+|multidrug-effflux-MFS-transporter
MNLRILLILGALSAFGPLAIDFYLPSFPTLAKAFATDVEHVQLSLAAYFAGLSIGQLLYGPVADRYGRRLPLLVGVSIFTLASAACALAPSLEWLIAARFVQALGGCAGMVISRAVVRDLCDPIGAAKAFSQLMLVMGLAPILAPVAGGLLLDWQGWQSIFVCLTLFAALAGLGVALWLPETIPADGERPPLSGALGQYRRLFADRLFLAYGLSGGVAMAGMFAYIAGSPYVFIQLYGIPAEHYGWLFGSNAAGFIVMAQVNARLLRYRGPAFWLRRIIWGYLACGLALLGIASLQPATLWPLLVPLFGCVASLGCIIPNASACAMAGQGQHAGSASALMGSLQFSVAAGASALVGVLHDGTAIPMTLVIAVCGAVATLLAWQTGRLERQAA
>NZ_LR739068.1|WP_003104346.1|1527437_1527614_-|hypothetical-protein
MNILVRPSQTPKGQCWQVCLDQQAVNFRSESEARRFVDRLEARLRAPHVLPELKQRTA
>NZ_LR739068.1|WP_003122160.1|1527740_1528664_-|AraC-family-transcriptional-regulator
MDYIAEPATDMSHTSDWPLPADSLRLPIPAALLEKLAVHPLSRDLYPTSLGHYRRARDHRMSRERHDEHLLIYCSEGQGLLRVREGEAWREYRVGSGDLLWLPPGMAHDYAADDRQPWTIFWTHLRGDSATWLQHSAGYRDTPLRHWGLQHALLGGFEQLLEVRHSGYRFQHFLLAASRLRSLLCQLPLLRPLREGSLDLDGLHAYMREHLHARLELERLAAFCNLSKFHFVSRYKAITGRTPIQHFLHLKIEYACQLLDSSDQSVARVGQAVGYDDSYYFSRLFSKVMGLSPSAYRQRVRQGEGGA
>NZ_LR739068.1|WP_003104350.1|1528795_1530289_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MSVPVRHLIAGAFVEGLGAQRIPVSNPLDNSTLAEIACASAEQVEQAVASARETFASWKETPVSERARVMLRYQALLKEHHDELAKIVSSELGKTFEDAKGDVWRGIEVVEHACNVPSLLMGETVENVARNIDTYSITQPLGVCVGITPFNFPAMIPLWMFPLAIACGNAFILKPSEQVPLTSVRLAELFLEAGAPKGVLQVVHGGKEQVDQLLKHPQVKAVSFVGSVAVGQYVYHTGTAHNKRVQSFAGAKNHMVIMPDADKAQVISNLVGASVGAAGQRCMAISVAVLVGAAREWIPEIRDALAKVRPGPWDDSGASYGPVINPQAKARIERLIGQGVEEGAQLLLDGRGYKVEGYPDGNWVGPTLFAGVRPDMAIYREEVFGPVLCLAEVDSLEQAIRLINESPYGNGTSIFTSSGAAARTFQHHIEVGQVGINIPIPVPLPFFSFTGWKGSFYGDLHAYGKQGVRFYTETKTVTARWFDSDSVAGTNFSIQMR
>NZ_LR739068.1|WP_003104352.1|1530304_1531201_+|3-hydroxyisobutyrate-dehydrogenase
MTDIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLSLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKSLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAGGFQVRLMNKDLGLALANAQAVQASTPLGALARNLFSLHAQADAEHEGLDFSSIQKLYRGKD
>NZ_LR739068.1|WP_003104354.1|1531302_1533189_+|propionyl-CoA-synthetase
MTYLQQHARSIAEPAAFWAEQARSLAWYQAPANILESLPDGTHRWFADGRLNSAYLALDRQIEEGRGEQTALIYDSPVTGTQDRYSYLRLRDEVARLAGALRALGVGKGDRVIIYMPMVPQAAMAMLACARLGAVHSVVFGGFAPYELALRIDDATPKLVLTASCGLEFDRVIEYKPLVDKALELAIHQPAHVMVWQRPQAPARLHPGRDLDWQDCLAAAEPADPLPVASGDPLYIMYTSGTTGKPKGIVRDNGGHAVAVRYAVRTIYGMQAGDVWWGISDVGWVVGHSLIVYGPLMCGCTTVFYEGKPVRTPDAGAYWRVIEEHRVNSLFCAPTAIRAIRKEDPHGERVKRYDLGSLRHLFLAGEKLDSSTQHWLEEHTGRPVHDHWWQTETGWPVTAPCIGIAGHDLRAGSTNRAVPGYHVQVLDDEGRPLGANRQGAIVIALPLPPGCAQTLWGDHPRYLQAYLGNYPGYYHTGDGGYLDEDGFVYIMGRTDDVINVSGHRLSTGEMEERVAQHQAVAECAVIGVRDELKGHVPLGLVVLKDDAGIAAEQLQRELVALVREQIGALACFQRVVVVKRLPKTRSGKILRAVLRKIADGEDYAAPSTIDDPTILGEIEAALRVRKAG

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Crispr_ID: NZ_LR739068_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR739068_3

1897667-1897768

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LR739068_3

>merge|NZ_LR739068|3|1897667-1897768|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_LR739068|3|3|1897667-1897768|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR739068.1\|WP_003091540.1\|1899060_1899327_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_LR739068.1\|WP_003158338.1\|1894939_1896739_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_LR739068.1\|WP_003091533.1\|1904011_1904329_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739068.1\|WP_003116401.1\|1905221_1906121_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_LR739068.1\|WP_003091546.1\|1893194_1894850_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_LR739068.1\|WP_003114808.1\|1891811_1892669_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_LR739068.1\|WP_003109191.1\|1906130_1906466_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_LR739068.1\|WP_003114810.1\|1896735_1897362_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_LR739068.1\|WP_003114813.1\|1902048_1902876_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_LR739068.1\|WP_003114814.1\|1904475_1905117_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_LR739068.1\|WP_003109182.1\|1897470_1897629_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_LR739068.1\|WP_003114811.1\|1897903_1899028_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_LR739068.1\|WP_003114806.1\|1888985_1889789_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_LR739068.1\|WP_003091547.1\|1892886_1893198_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_LR739068.1\|WP_003158336.1\|1887988_1888846_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_LR739068.1\|WP_003091534.1\|1902882_1903812_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LR739068.1\|WP_003109184.1\|1899608_1901441_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR739068.1\|WP_003114812.1\|1901503_1902067_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_LR739068.1\|WP_003158337.1\|1889792_1891154_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_LR739068.1\|WP_003091551.1\|1891296_1891518_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746

Protein	Function_ID	Function_description	E-value
NZ_LR739068.1\|WP_003091540.1\|1899060_1899327_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_LR739068.1\|WP_003158338.1\|1894939_1896739_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_LR739068.1\|WP_003116401.1\|1905221_1906121_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_LR739068.1\|WP_003091546.1\|1893194_1894850_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_LR739068.1\|WP_003114808.1\|1891811_1892669_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117
NZ_LR739068.1\|WP_003109191.1\|1906130_1906466_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_LR739068.1\|WP_003114810.1\|1896735_1897362_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_LR739068.1\|WP_003114813.1\|1902048_1902876_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	9.99012e-42
NZ_LR739068.1\|WP_003114814.1\|1904475_1905117_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_LR739068.1\|WP_003109182.1\|1897470_1897629_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_LR739068.1\|WP_003114811.1\|1897903_1899028_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_LR739068.1\|WP_003114806.1\|1888985_1889789_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101
NZ_LR739068.1\|WP_003091547.1\|1892886_1893198_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_LR739068.1\|WP_003158336.1\|1887988_1888846_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	9.86419e-97
NZ_LR739068.1\|WP_003091534.1\|1902882_1903812_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_LR739068.1\|WP_003109184.1\|1899608_1901441_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_LR739068.1\|WP_003114812.1\|1901503_1902067_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_LR739068.1\|WP_003091551.1\|1891296_1891518_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33

>NZ_LR739068.1|WP_003109182.1|1897470_1897629_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_LR739068.1|WP_003114810.1|1896735_1897362_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_LR739068.1|WP_003158338.1|1894939_1896739_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARTDDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_LR739068.1|WP_003091546.1|1893194_1894850_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_LR739068.1|WP_003091547.1|1892886_1893198_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_LR739068.1|WP_003114808.1|1891811_1892669_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_LR739068.1|WP_003091551.1|1891296_1891518_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_LR739068.1|WP_003158337.1|1889792_1891154_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFVLPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_LR739068.1|WP_003114806.1|1888985_1889789_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_LR739068.1|WP_003158336.1|1887988_1888846_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGKRPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_LR739068.1|WP_003114811.1|1897903_1899028_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_LR739068.1|WP_003091540.1|1899060_1899327_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_LR739068.1|WP_003109184.1|1899608_1901441_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_LR739068.1|WP_003114812.1|1901503_1902067_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_LR739068.1|WP_003114813.1|1902048_1902876_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_LR739068.1|WP_003091534.1|1902882_1903812_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_LR739068.1|WP_003091533.1|1904011_1904329_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_LR739068.1|WP_003114814.1|1904475_1905117_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_LR739068.1|WP_003116401.1|1905221_1906121_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_LR739068.1|WP_003109191.1|1906130_1906466_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_LR739068_2	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	NZ_LR739068.1	4963482-4963513	1.0
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	NZ_LR739068.1	913712-913743	1.0
NZ_LR739068_2	2.13\|1522982\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522982-1523013	32	NZ_LR739068.1	901782-901813	1.0

1. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to position: 4963482-4963513, mismatch: 0, identity: 1.0

tgaaggccaacccgcaagtcagcaagggcatc	CRISPR spacer
tgaaggccaacccgcaagtcagcaagggcatc	Protospacer
********************************

2. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to position: 913712-913743, mismatch: 0, identity: 1.0

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcgtggagcgcggggcgac	Protospacer
********************************

3. spacer 2.13|1522982|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to position: 901782-901813, mismatch: 0, identity: 1.0

gtcatgggcgagctctacgccaacccgcaagc	CRISPR spacer
gtcatgggcgagctctacgccaacccgcaagc	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR739068_2	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	MK034952	Pseudomonas phage Dobby, complete genome	21544-21575	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	JX403939	Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome	9917-9948	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	KM389212	UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence	32358-32389	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	KM389324	UNVERIFIED: Pseudomonas phage F_ET2439sp/ET602 clone ctg7180000000166 genomic sequence	10435-10466	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	MK511012	Pseudomonas phage BR153, partial genome	29238-29269	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	KM389210	UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence	16742-16773	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	KM389463	UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence	17737-17768	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	KU310943	Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome	25076-25107	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NC_016762	Pseudomonas phage phi297, complete genome	30217-30248	0	1.0
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NC_030929	Pseudomonas phage JBD44, complete genome	14079-14110	0	1.0
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	JX403939	Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome	26563-26594	0	1.0
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	KU310943	Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome	41862-41893	0	1.0
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	NC_016762	Pseudomonas phage phi297, complete genome	14027-14058	0	1.0
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	MK510993	Pseudomonas phage BR201, partial genome	36974-37005	0	1.0
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	MK510971	Pseudomonas phage CF79, partial genome	39079-39110	0	1.0
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	MK510970	Pseudomonas phage CF67, partial genome	17581-17612	0	1.0
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	MK510990	Pseudomonas phage BR133, partial genome	20863-20894	0	1.0
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	MK510968	Pseudomonas phage CF55, partial genome	18930-18961	0	1.0
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	MK510969	Pseudomonas phage CF60, partial genome	3751-3782	0	1.0
NZ_LR739068_2	2.13\|1522982\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522982-1523013	32	KM389226	UNVERIFIED: Pseudomonas phage F_MX1987sp/MX560 clone contig00002 genomic sequence	4670-4701	0	1.0
NZ_LR739068_3	3.1\|1897692\|52\|NZ_LR739068\|CRISPRCasFinder	1897692-1897743	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0
NZ_LR739068_2	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	NC_003278	Pseudomonas phage phiCTX, complete genome	20774-20805	1	0.969
NZ_LR739068_2	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	Y13918	Pseudomonas aeruginosa phage phi CTX DNA, complete genome	20774-20805	1	0.969
NZ_LR739068_2	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	AB008550	Pseudomonas phage phiCTX DNA, complete genome	20774-20805	1	0.969
NZ_LR739068_2	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	KM389402	UNVERIFIED: Pseudomonas phage F_HA1961sp/Pa1641 clone contig00002 genomic sequence	833-864	1	0.969
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	MK510989	Pseudomonas phage BR322, partial genome	37725-37756	1	0.969
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	MK510966	Pseudomonas phage CF53, partial genome	37726-37757	1	0.969
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	MK510981	Pseudomonas phage BR143, partial genome	37746-37777	1	0.969
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	MK510967	Pseudomonas phage CF54, partial genome	11443-11474	1	0.969
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	MK510991	Pseudomonas phage BR141, partial genome	37707-37738	1	0.969
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	MK510980	Pseudomonas phage BR123, partial genome	37725-37756	1	0.969
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	MK510983	Pseudomonas phage BR178, partial genome	37726-37757	1	0.969
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	MK511008	Pseudomonas phage CF124, partial genome	3057-3088	1	0.969
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	MK511013	Pseudomonas phage BR161, partial genome	15762-15793	1	0.969
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	MK511002	Pseudomonas phage CF57, partial genome	15661-15692	1	0.969
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	MK511009	Pseudomonas phage CF136, partial genome	15617-15648	1	0.969
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	MK511003	Pseudomonas phage CF65, partial genome	15648-15679	1	0.969
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	MK511005	Pseudomonas phage CF81, partial genome	15753-15784	1	0.969
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	KM389212	UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence	15679-15710	1	0.969
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	KM389229	UNVERIFIED: Pseudomonas phage F_TK1718sp/PAK clone contig00001 genomic sequence	9242-9273	1	0.969
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	MK511012	Pseudomonas phage BR153, partial genome	16043-16074	1	0.969
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	KM389210	UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence	33421-33452	1	0.969
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	KM389463	UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence	34458-34489	1	0.969
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	KM389322	UNVERIFIED: Pseudomonas phage F_ET2439sp/ET602 clone ctg7180000000164 genomic sequence	1436-1467	1	0.969
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	NC_030929	Pseudomonas phage JBD44, complete genome	46385-46416	1	0.969
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	MK510965	Pseudomonas phage CF34, partial genome	31551-31582	2	0.938
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP020084	Blastomonas fulva strain T2 plasmid unnamed, complete sequence	2360-2391	5	0.844
NZ_LR739068_2	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	JX128258	Escherichia phage ECML-117, complete genome	44684-44715	6	0.812
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP012701	Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 1, complete sequence	144782-144813	6	0.812
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP016618	Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence	296551-296582	6	0.812
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1523247-1523278	7	0.781
NZ_LR739068_2	2.5\|1522502\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522502-1522533	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1504695-1504726	7	0.781
NZ_LR739068_2	2.7\|1522622\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522622-1522653	32	NZ_CP040762	Paracoccus sp. 2251 plasmid unnamed2, complete sequence	182931-182962	7	0.781
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP016462	Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence	150306-150337	7	0.781
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_AP017899	Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence	142753-142784	7	0.781
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	487407-487438	7	0.781
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4092024-4092055	7	0.781
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP009431	Sphingopyxis macrogoltabida strain 203 plasmid unnamed, complete sequence	118480-118511	7	0.781
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	505324-505355	7	0.781
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NZ_CP044073	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence	28588-28619	7	0.781
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	255090-255121	7	0.781
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	802071-802102	7	0.781
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	MN844877	Sphaerotilus phage vB_SnaP-R1, complete genome	32227-32258	7	0.781
NZ_LR739068_2	2.13\|1522982\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522982-1523013	32	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	133281-133312	7	0.781
NZ_LR739068_2	2.2\|1522322\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522322-1522353	32	NZ_CP022118	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence	37848-37879	8	0.75
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP015203	Rhodococcus sp. 008 plasmid pR8L1, complete sequence	355723-355754	8	0.75
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	806102-806133	8	0.75
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	473452-473483	8	0.75
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1638414-1638445	8	0.75
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	962070-962101	8	0.75
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	814137-814168	8	0.75
NZ_LR739068_2	2.8\|1522682\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522682-1522713	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1170305-1170336	8	0.75
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	514088-514119	8	0.75
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	24163-24194	8	0.75
NZ_LR739068_2	2.3\|1522382\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522382-1522413	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	277357-277388	9	0.719
NZ_LR739068_2	2.7\|1522622\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522622-1522653	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	2072647-2072678	9	0.719
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	455554-455585	9	0.719
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	308973-309004	9	0.719
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	4955-4986	9	0.719
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	49130-49161	9	0.719
NZ_LR739068_2	2.11\|1522862\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522862-1522893	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	415146-415177	9	0.719
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	NZ_CP026306	Streptomyces lunaelactis strain MM109 plasmid pSLUN2, complete sequence	26876-26907	9	0.719
NZ_LR739068_2	2.12\|1522922\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522922-1522953	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	112092-112123	9	0.719
NZ_LR739068_2	2.3\|1522382\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522382-1522413	32	NZ_LR134444	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 2, complete sequence	19641-19672	10	0.688
NZ_LR739068_2	2.13\|1522982\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522982-1523013	32	NC_015065	Granulicella tundricola MP5ACTX9 plasmid pACIX902, complete sequence	30983-31014	10	0.688
NZ_LR739068_2	2.10\|1522802\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522802-1522833	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	288932-288963	19	0.406

1. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK034952 (Pseudomonas phage Dobby, complete genome) position: , mismatch: 0, identity: 1.0

tgaaggccaacccgcaagtcagcaagggcatc	CRISPR spacer
tgaaggccaacccgcaagtcagcaagggcatc	Protospacer
********************************

2. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to JX403939 (Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

3. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389212 (UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

4. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389324 (UNVERIFIED: Pseudomonas phage F_ET2439sp/ET602 clone ctg7180000000166 genomic sequence) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

5. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511012 (Pseudomonas phage BR153, partial genome) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

6. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389210 (UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

7. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389463 (UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

8. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KU310943 (Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

9. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_016762 (Pseudomonas phage phi297, complete genome) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

10. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_030929 (Pseudomonas phage JBD44, complete genome) position: , mismatch: 0, identity: 1.0

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgccggcgg	Protospacer
********************************

11. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to JX403939 (Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome) position: , mismatch: 0, identity: 1.0

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcgaacagcttcgcgaactg	Protospacer
********************************

12. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KU310943 (Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome) position: , mismatch: 0, identity: 1.0

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcgaacagcttcgcgaactg	Protospacer
********************************

13. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_016762 (Pseudomonas phage phi297, complete genome) position: , mismatch: 0, identity: 1.0

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcgaacagcttcgcgaactg	Protospacer
********************************

14. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510993 (Pseudomonas phage BR201, partial genome) position: , mismatch: 0, identity: 1.0

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcgtggagcgcggggcgac	Protospacer
********************************

15. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510971 (Pseudomonas phage CF79, partial genome) position: , mismatch: 0, identity: 1.0

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcgtggagcgcggggcgac	Protospacer
********************************

16. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510970 (Pseudomonas phage CF67, partial genome) position: , mismatch: 0, identity: 1.0

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcgtggagcgcggggcgac	Protospacer
********************************

17. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510990 (Pseudomonas phage BR133, partial genome) position: , mismatch: 0, identity: 1.0

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcgtggagcgcggggcgac	Protospacer
********************************

18. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510968 (Pseudomonas phage CF55, partial genome) position: , mismatch: 0, identity: 1.0

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcgtggagcgcggggcgac	Protospacer
********************************

19. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510969 (Pseudomonas phage CF60, partial genome) position: , mismatch: 0, identity: 1.0

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcgtggagcgcggggcgac	Protospacer
********************************

20. spacer 2.13|1522982|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389226 (UNVERIFIED: Pseudomonas phage F_MX1987sp/MX560 clone contig00002 genomic sequence) position: , mismatch: 0, identity: 1.0

gtcatgggcgagctctacgccaacccgcaagc	CRISPR spacer
gtcatgggcgagctctacgccaacccgcaagc	Protospacer
********************************

21. spacer 3.1|1897692|52|NZ_LR739068|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

22. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_003278 (Pseudomonas phage phiCTX, complete genome) position: , mismatch: 1, identity: 0.969

tgaaggccaacccgcaagtcagcaagggcatc	CRISPR spacer
tgaaggccaacccgcaggtcagcaagggcatc	Protospacer
****************.***************

23. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to Y13918 (Pseudomonas aeruginosa phage phi CTX DNA, complete genome) position: , mismatch: 1, identity: 0.969

tgaaggccaacccgcaagtcagcaagggcatc	CRISPR spacer
tgaaggccaacccgcaggtcagcaagggcatc	Protospacer
****************.***************

24. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to AB008550 (Pseudomonas phage phiCTX DNA, complete genome) position: , mismatch: 1, identity: 0.969

tgaaggccaacccgcaagtcagcaagggcatc	CRISPR spacer
tgaaggccaacccgcaggtcagcaagggcatc	Protospacer
****************.***************

25. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389402 (UNVERIFIED: Pseudomonas phage F_HA1961sp/Pa1641 clone contig00002 genomic sequence) position: , mismatch: 1, identity: 0.969

tgaaggccaacccgcaagtcagcaagggcatc	CRISPR spacer
tgaaggccaacccgcaggtcagcaagggcatc	Protospacer
****************.***************

26. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510989 (Pseudomonas phage BR322, partial genome) position: , mismatch: 1, identity: 0.969

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
aggttcgtggcggaccggcaagacctcaaccg	Protospacer
****************** *************

27. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510966 (Pseudomonas phage CF53, partial genome) position: , mismatch: 1, identity: 0.969

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
aggttcgtggcggaccggcaagacctcaaccg	Protospacer
****************** *************

28. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510981 (Pseudomonas phage BR143, partial genome) position: , mismatch: 1, identity: 0.969

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
aggttcgtggcggaccggcaagacctcaaccg	Protospacer
****************** *************

29. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510967 (Pseudomonas phage CF54, partial genome) position: , mismatch: 1, identity: 0.969

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
aggttcgtggcggaccggcaagacctcaaccg	Protospacer
****************** *************

30. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510991 (Pseudomonas phage BR141, partial genome) position: , mismatch: 1, identity: 0.969

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
aggttcgtggcggaccggcaagacctcaaccg	Protospacer
****************** *************

31. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510980 (Pseudomonas phage BR123, partial genome) position: , mismatch: 1, identity: 0.969

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
aggttcgtggcggaccggcaagacctcaaccg	Protospacer
****************** *************

32. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510983 (Pseudomonas phage BR178, partial genome) position: , mismatch: 1, identity: 0.969

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
aggttcgtggcggaccggcaagacctcaaccg	Protospacer
****************** *************

33. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511008 (Pseudomonas phage CF124, partial genome) position: , mismatch: 1, identity: 0.969

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgctggcgg	Protospacer
**************************.*****

34. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511013 (Pseudomonas phage BR161, partial genome) position: , mismatch: 1, identity: 0.969

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgctggcgg	Protospacer
**************************.*****

35. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511002 (Pseudomonas phage CF57, partial genome) position: , mismatch: 1, identity: 0.969

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgctggcgg	Protospacer
**************************.*****

36. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511009 (Pseudomonas phage CF136, partial genome) position: , mismatch: 1, identity: 0.969

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgctggcgg	Protospacer
**************************.*****

37. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511003 (Pseudomonas phage CF65, partial genome) position: , mismatch: 1, identity: 0.969

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgctggcgg	Protospacer
**************************.*****

38. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511005 (Pseudomonas phage CF81, partial genome) position: , mismatch: 1, identity: 0.969

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
atcaaggtcaacctgggctccggcgctggcgg	Protospacer
**************************.*****

39. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389212 (UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence) position: , mismatch: 1, identity: 0.969

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcaaacagcttcgcgaactg	Protospacer
**************.*****************

40. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389229 (UNVERIFIED: Pseudomonas phage F_TK1718sp/PAK clone contig00001 genomic sequence) position: , mismatch: 1, identity: 0.969

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcaaacagcttcgcgaactg	Protospacer
**************.*****************

41. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK511012 (Pseudomonas phage BR153, partial genome) position: , mismatch: 1, identity: 0.969

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcgaaaagcttcgcgaactg	Protospacer
***************** **************

42. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389210 (UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence) position: , mismatch: 1, identity: 0.969

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcaaacagcttcgcgaactg	Protospacer
**************.*****************

43. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389463 (UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence) position: , mismatch: 1, identity: 0.969

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcaaacagcttcgcgaactg	Protospacer
**************.*****************

44. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to KM389322 (UNVERIFIED: Pseudomonas phage F_ET2439sp/ET602 clone ctg7180000000164 genomic sequence) position: , mismatch: 1, identity: 0.969

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcaaacagcttcgcgaactg	Protospacer
**************.*****************

45. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_030929 (Pseudomonas phage JBD44, complete genome) position: , mismatch: 1, identity: 0.969

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgaactcaaacagcttcgcgaactg	Protospacer
**************.*****************

46. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MK510965 (Pseudomonas phage CF34, partial genome) position: , mismatch: 2, identity: 0.938

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
tgtgtacccctgcgcattgagcgcggggcgac	Protospacer
***************.* **************

47. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020084 (Blastomonas fulva strain T2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
gatcgaccagatcgtctacaccgccaccggga	Protospacer
*..*.********************* ** **

48. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to JX128258 (Escherichia phage ECML-117, complete genome) position: , mismatch: 6, identity: 0.812

tgaaggccaacccgcaagtcagcaagggcatc-	CRISPR spacer
tgaaggacaacccgcaaggcagc-ggcacatct	Protospacer
****** *********** **** .* .****

49. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012701 (Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.812

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
gatcgaccagatcgtctacaccgccaccggca	Protospacer
*..*.********************* **  *

50. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

ggccaaccagatcgtctacaccgc-caacgtga	CRISPR spacer
cgccagccagatcatctacaccgcaccacttg-	Protospacer
 ****.*******.********** * ** **

51. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.781

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
tgcttccgagcggacgggaaagacgtcaaccg	Protospacer
 * ***  .****** ******** *******

52. spacer 2.5|1522502|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781

aggttcgtggcggaccggaaagacctcaaccg	CRISPR spacer
tgcttccgagcggacgggaaagacgtcaaccg	Protospacer
 * ***  .****** ******** *******

53. spacer 2.7|1522622|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040762 (Paracoccus sp. 2251 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

accaccaagatggtccaggccgtgcgttcgat---	CRISPR spacer
accaccgcgatggtccaggccgtcag---gatccc	Protospacer
******. ***************  *   ***

54. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 7, identity: 0.781

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
gatcgaccagatcgtctacaccgcgaccggca	Protospacer
*..*.******************* * **  *

55. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017899 (Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence) position: , mismatch: 7, identity: 0.781

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
gatcgaccagatcgtctacaccgcgaccggca	Protospacer
*..*.******************* * **  *

56. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 7, identity: 0.781

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
gcccaaccagctcgcctacaccgccaccccaa	Protospacer
* ******** ***.*********** * ..*

57. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
gccctgggagatcgtcgacaccgccatcgtga	Protospacer
* ** .  ******** ********* *****

58. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009431 (Sphingopyxis macrogoltabida strain 203 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
gatcgaccagatcgtctacaccgcgaccggca	Protospacer
*..*.******************* * **  *

59. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
gacctggtcaacctgggcttcggcggcggcgc	Protospacer
. *  **************.***** *****

60. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044073 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
accggcttcaacctgggctctggcggcggcgg	Protospacer
*.*..  *************.**** ******

61. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

---atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
cccatccgg---aacctgggctcccgctccggcgg	Protospacer
   *** .*   ************ ** *******

62. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.781

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
accaaggtcaaccagggcgccggcgacatggg	Protospacer
*.*********** **** ****** *.  **

63. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to MN844877 (Sphaerotilus phage vB_SnaP-R1, complete genome) position: , mismatch: 7, identity: 0.781

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aggtcttcgtactcgaactgcttggtgcgcag	Protospacer
********* ******** **** *.* .* *

64. spacer 2.13|1522982|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

gtcatgggcgagctctacgccaacccgcaagc	CRISPR spacer
gccctggccgagctctacgccgacccgaagac	Protospacer
*.* *** *************.***** *..*

65. spacer 2.2|1522322|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022118 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aggcacgcattgccttgaaaggcgttctcttc	CRISPR spacer
gtatacccattgccttgaaagacgttctccgc	Protospacer
. ..** **************.*******. *

66. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 8, identity: 0.75

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
cgacgaccagatcgtctacatcgccaaccacg	Protospacer
 * *.***************.*******   .

67. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
cgccaacgagatcgtctacgccgccggcatcg	Protospacer
 ****** ***********.*****..*.* .

68. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.75

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
cgccaacgagatcgtctacgccgccggcatcg	Protospacer
 ****** ***********.*****..*.* .

69. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
cgccaacgagatcgtctacgccgccggcatcg	Protospacer
 ****** ***********.*****..*.* .

70. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
cgccaacgagatcgtctacgccgccggcatcg	Protospacer
 ****** ***********.*****..*.* .

71. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
cgccaacgagatcgtctacgccgccggcatcg	Protospacer
 ****** ***********.*****..*.* .

72. spacer 2.8|1522682|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggccaaccagatcgtctacaccgccaacgtga	CRISPR spacer
cgccaacgagatcgtctacgccgccggcatcg	Protospacer
 ****** ***********.*****..*.* .

73. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 8, identity: 0.75

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
cgtccgaagacctcgcacagcttcgcgaactg	Protospacer
 * .*   ** **** ****************

74. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.75

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
aaaccggcgaacacgaacagcgtcgcgaacag	Protospacer
*...*  ***** ******** ******** *

75. spacer 2.3|1522382|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

tatgatcatgccccgtcctccggctccaatac	CRISPR spacer
ggcgctcatgccccgtcctcccgccccagcgc	Protospacer
 ..* **************** **.***...*

76. spacer 2.7|1522622|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.719

accaccaagatggtccaggccgtgc--gttcgat	CRISPR spacer
ggcacccagatggtcgaggccgtgctggccca--	Protospacer
. **** ******** *********  *..*.

77. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
gtgcgctccatcctgggcttcggcgccggcgg	Protospacer
.*  .  .** ********.************

78. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 9, identity: 0.719

atcaaggtcaacctgggctccggcgccggcgg	CRISPR spacer
ttcggctgcaaccttggcgccggcgccggcga	Protospacer
 **..   ****** *** ************.

79. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 9, identity: 0.719

atcaag--gtcaacctgggctccggcgccggcgg	CRISPR spacer
--cgggtcctcgacctgggctgcggcgccggcca	Protospacer
  *..*   **.********* ********** .

80. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
tagtcctcgaacccgaacagcttcgggcccgc	Protospacer
 .***.******.************ *  *

81. spacer 2.11|1522862|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

aggtcttcgaactcgaacagcttcgcgaactg	CRISPR spacer
tcgtgaccgaacgcgaccagcttcgcgaacgc	Protospacer
  **  .***** *** *************

82. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026306 (Streptomyces lunaelactis strain MM109 plasmid pSLUN2, complete sequence) position: , mismatch: 9, identity: 0.719

tgtgtac-----ccctgcgcgtggagcgcggggcgac	CRISPR spacer
-----acccgggccctgcgcctggagcgcggcgcgca	Protospacer
     **     ******** ********** ***

83. spacer 2.12|1522922|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tgtgtacccctgcgcgtggagcgcggggcgac	CRISPR spacer
gcggtgccgctgcgcgtggagcgcggcgaggt	Protospacer
   **.** ***************** * *..

84. spacer 2.3|1522382|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134444 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

tatgatcatgccccgtcctccggctccaatac	CRISPR spacer
cgtgatcatgccccggccgccggctgcggcga	Protospacer
..************* ** ****** *....

85. spacer 2.13|1522982|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NC_015065 (Granulicella tundricola MP5ACTX9 plasmid pACIX902, complete sequence) position: , mismatch: 10, identity: 0.688

gtcatgggcgagctctacgccaacccgcaagc	CRISPR spacer
cagaagggcgagctctacaccaccccgcttaa	Protospacer
   * *************.*** *****  .

86. spacer 2.10|1522802|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 19, identity: 0.406

atcaaggtcaacctgggctccggcgccggcgg----------------	CRISPR spacer
----------------tcgccggcgccggcgccaaggttgcagccgag	Protospacer
                 * ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

642225 : 694860

Pseudomonas_phage(24.0%)

tRNA,tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003099590.1\|642225_643251_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.1
WP_003085061.1\|643329_643899_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|643982_644336_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003099585.1\|644326_644869_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|644841_646074_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_003099582.1\|646117_646624_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|646717_648271_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|648267_649539_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|649639_651562_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|651840_652173_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003099572.1\|652216_653068_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2R4ALP3	Aeromonas_phage	2.4e-08	44.2
WP_003085085.1\|653067_653448_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003099569.1\|653484_654291_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003099567.1\|654406_655393_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|655389_656682_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003099560.1\|656662_659434_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003099554.1\|659560_660577_+	phosphotransferase	NA	NA	NA	NA
WP_003099549.1\|660573_661248_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|661249_662008_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_003099546.1\|662008_663070_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_003099544.1\|663221_665615_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|665660_666293_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|666421_667456_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003085109.1\|667689_668799_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|668854_669901_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003099537.1\|670014_671262_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|671367_672198_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|672321_672996_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|672995_673814_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003085126.1\|673886_675365_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003085128.1\|675552_675867_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_003085129.1\|675966_676737_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	6.1e-72	59.0
WP_003085132.1\|677194_677395_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003085135.1\|677442_677802_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|678164_678614_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003101620.1\|678635_679151_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
WP_003085141.1\|679147_679705_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
WP_003085143.1\|679857_680184_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003085151.1\|680180_681068_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_003137385.1\|681060_681594_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	5.2e-62	64.6
WP_003101626.1\|681595_683704_+\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	2.5e-224	52.1
WP_003085172.1\|683712_684153_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_003101628.1\|684195_685356_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	7.8e-188	83.6
WP_003085175.1\|685368_685872_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|685886_686231_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_003101633.1\|686400_688638_+	hypothetical protein	NA	NA	NA	NA
WP_003085182.1\|688647_689520_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-75	51.7
WP_003101635.1\|689494_689701_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003101637.1\|689758_690748_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.2e-106	55.8
WP_003085188.1\|690780_691410_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	3.2e-87	78.5
WP_003101639.1\|691406_691769_+	hypothetical protein	H2BDA0	Pseudomonas_phage	1.9e-15	47.9
WP_003118919.1\|691765_692023_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003101640.1\|692370_692976_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003085203.1\|692977_694027_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|694023_694860_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

875594 : 918206

Pseudomonas_phage(91.23%)

capsid,portal,integrase,terminase,protease,tRNA,tail,head,holin

attL 869566:869581|attR 901043:901058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
869566:869581	attL	NA	NA	NA	NA
WP_003129398.1\|875594_876644_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.3e-101	53.7
WP_031640221.1\|876643_876886_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-16	60.3
WP_034002387.1\|876869_877646_-	hypothetical protein	A0A0A0YUE3	Pseudomonas_phage	6.7e-111	88.6
WP_023092496.1\|877642_877834_-	hypothetical protein	A0A1W6JTB8	Pseudomonas_phage	1.2e-29	98.4
WP_023092499.1\|879498_879930_-	hypothetical protein	A0A0U1T4M5	Pseudomonas_phage	6.0e-61	90.0
WP_034002389.1\|879926_880373_-	hypothetical protein	Q6JIG5	Burkholderia_virus	6.2e-53	70.3
WP_034002391.1\|880369_882280_-	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	4.1e-287	94.7
WP_023092501.1\|882276_882705_-	hypothetical protein	A0A291AUJ5	Sinorhizobium_phage	1.3e-12	40.9
WP_003129627.1\|882749_883586_-	prohibitin family protein	A0A0A0YRT7	Pseudomonas_phage	2.9e-128	99.6
WP_023121762.1\|883582_883837_-	hypothetical protein	A0A0A0YUF2	Pseudomonas_phage	9.4e-38	96.4
WP_023085534.1\|883936_884170_-	hypothetical protein	A0A0A0YQ28	Pseudomonas_phage	2.1e-36	96.1
WP_033987591.1\|884172_884553_-	response regulator transcription factor	A0A1W6JTA9	Pseudomonas_phage	3.7e-30	62.0
WP_078451236.1\|884668_885439_-	helix-turn-helix transcriptional regulator	W6MVG5	Pseudomonas_phage	2.2e-61	51.9
WP_031691380.1\|886348_886660_+	hypothetical protein	A0A0A0YUF6	Pseudomonas_phage	1.8e-46	93.2
WP_034053192.1\|886656_886944_+	hypothetical protein	A0A0A0YQ33	Pseudomonas_phage	1.3e-43	98.9
WP_023085532.1\|886940_887249_+	hypothetical protein	A0A0A0YWH5	Pseudomonas_phage	1.2e-34	75.5
WP_023085531.1\|887245_887524_+	hypothetical protein	A0A0A0YR77	Pseudomonas_phage	8.4e-32	81.5
WP_003119035.1\|887516_887750_+	hypothetical protein	A0A0A0YRU7	Pseudomonas_phage	8.3e-33	94.8
WP_023083808.1\|887746_888547_+	Rha family transcriptional regulator	A0A1W6JTB2	Pseudomonas_phage	6.9e-119	84.6
WP_023083807.1\|888543_888774_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	1.7e-38	97.4
WP_052150899.1\|888770_889793_+	DUF1376 domain-containing protein	H2BD69	Pseudomonas_phage	1.3e-42	54.4
WP_003159056.1\|889776_890616_+	ATP-binding protein	A0A1W6JTD8	Pseudomonas_phage	1.2e-70	52.2
WP_003159057.1\|890612_892004_+	AAA family ATPase	A0A1W6JTB3	Pseudomonas_phage	3.1e-231	86.5
WP_003159059.1\|892000_893278_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	1.6e-101	46.3
WP_003159060.1\|893292_893577_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	4.0e-37	87.5
WP_003159061.1\|893573_894131_+	hypothetical protein	A0A0A0YRV6	Pseudomonas_phage	1.7e-60	80.7
WP_071534974.1\|894325_894865_+	DUF4124 domain-containing protein	A0A1B0Z2K9	Pseudomonas_phage	1.3e-76	83.8
WP_003119044.1\|895133_895469_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	2.2e-58	100.0
WP_034053194.1\|895465_896083_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	4.7e-107	93.7
WP_171947066.1\|896100_896532_+	hypothetical protein	A0A0U4JX95	Pseudomonas_phage	2.5e-51	89.2
WP_023981182.1\|896668_897073_+	HNH endonuclease	A0A0U4B0J6	Pseudomonas_phage	3.7e-28	52.7
WP_014602593.1\|897154_897637_+\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	1.4e-61	74.4
WP_034053197.1\|897640_899368_+\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	1.2e-269	76.3
WP_023092517.1\|899367_900591_+\|portal	phage portal protein	A0A2D1GNU4	Pseudomonas_phage	1.9e-189	81.0
WP_023092518.1\|900568_901222_+\|head,protease	HK97 family phage prohead protease	A0A2D1GNL2	Pseudomonas_phage	2.6e-100	82.6
901043:901058	attR	NA	NA	NA	NA
WP_023092519.1\|901232_902435_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	9.9e-178	76.8
WP_034053198.1\|902480_902759_+	hypothetical protein	A0A2D1GNQ9	Pseudomonas_phage	2.5e-15	41.6
WP_034053200.1\|902751_903072_+\|head,tail	phage gp6-like head-tail connector protein	A0A2D1GNK0	Pseudomonas_phage	2.6e-29	55.2
WP_023093247.1\|903094_903277_+	hypothetical protein	A0A0U4K5G7	Pseudomonas_phage	3.1e-11	55.9
WP_034053203.1\|903286_903838_+	hypothetical protein	NA	NA	NA	NA
WP_034053205.1\|903834_904428_+	hypothetical protein	A0A0U4J906	Pseudomonas_phage	1.8e-100	97.5
WP_023092524.1\|904440_904878_+	hypothetical protein	A0A0U4IBQ1	Pseudomonas_phage	2.0e-72	95.9
WP_034053207.1\|904901_905687_+	hypothetical protein	A0A0U4ISK2	Pseudomonas_phage	6.7e-143	96.9
WP_023092526.1\|905742_906108_+	hypothetical protein	A0A0U4KLC4	Pseudomonas_phage	3.1e-58	98.3
WP_003098505.1\|906152_906302_+	hypothetical protein	NA	NA	NA	NA
WP_034053208.1\|906291_908433_+	tape measure protein	A0A0U3TH20	Pseudomonas_phage	0.0e+00	98.9
WP_003098501.1\|908442_908946_+	hypothetical protein	A0A0U4IIK1	Pseudomonas_phage	1.8e-93	100.0
WP_079382100.1\|908947_910651_+	hypothetical protein	A0A0U4JP39	Pseudomonas_phage	7.9e-306	94.0
WP_034008369.1\|910653_911064_+	hypothetical protein	A0A1W6JT78	Pseudomonas_phage	9.1e-59	100.0
WP_023092530.1\|911063_911609_+	hypothetical protein	A0A1W6JT85	Pseudomonas_phage	1.7e-100	100.0
WP_023092531.1\|911619_912024_+	hypothetical protein	A0A0U4B0P9	Pseudomonas_phage	7.6e-66	98.5
WP_023092532.1\|912020_913679_+	hypothetical protein	A0A0A0YRR5	Pseudomonas_phage	0.0e+00	95.6
WP_003159081.1\|913699_914287_+	hypothetical protein	A0A1B0Z051	Pseudomonas_phage	1.5e-102	94.9
WP_003159082.1\|914279_914471_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	3.5e-29	98.4
WP_034008367.1\|914475_915036_+	hypothetical protein	A0A0U4JIY3	Pseudomonas_phage	7.2e-99	98.4
WP_023083623.1\|915036_915318_+	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	7.4e-44	95.7
WP_003124028.1\|916242_916542_+	hypothetical protein	A0A1B0YZW1	Pseudomonas_phage	3.7e-49	98.0
WP_034053211.1\|916538_916772_+	hypothetical protein	A0A0S3UFY6	Pseudomonas_phage	4.4e-34	97.3
WP_003105684.1\|916967_918206_+\|tRNA	tyrosine--tRNA ligase	A0A2C9CX69	Yersinia_phage	7.8e-53	33.3

DBSCAN-SWA_3

1470220 : 1479249

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1470220_1470856_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_003115226.1\|1470901_1471795_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1471899_1472904_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1473330_1473654_-	ferredoxin family protein	NA	NA	NA	NA
WP_003113873.1\|1473720_1476288_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003098486.1\|1476413_1477421_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1477568_1478075_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1478208_1479249_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_4

2584934 : 2591828

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003097631.1\|2584934_2586215_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003097630.1\|2586216_2587614_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097628.1\|2587618_2588593_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003097625.1\|2588680_2589664_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.0
WP_003119979.1\|2589660_2589996_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003090391.1\|2589992_2590298_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2590297_2590657_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003097619.1\|2590653_2591049_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.5e-47	71.3
WP_003090386.1\|2591159_2591828_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_5

2648904 : 2704137

Pseudomonas_phage(60.38%)

integrase,tail,terminase,holin

attL 2652730:2652789|attR 2704366:2704457

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020750450.1\|2648904_2651790_+	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	1.9e-33	27.6
WP_003099002.1\|2651880_2652414_+	hypothetical protein	NA	NA	NA	NA
2652730:2652789	attL	NA	NA	NA	NA
WP_031639986.1\|2652875_2653940_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	5.2e-114	58.4
WP_003158549.1\|2653941_2654175_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	5.6e-13	50.7
WP_003099004.1\|2654231_2654618_-	hypothetical protein	L7TJJ9	Pseudomonas_virus	1.0e-64	99.2
WP_003099016.1\|2656032_2656362_+	hypothetical protein	A0A1W6JTA1	Pseudomonas_phage	3.8e-39	71.3
WP_033871465.1\|2656436_2656931_-	DUF550 domain-containing protein	A0A2K8HR09	Pseudomonas_phage	5.1e-88	92.7
WP_108116075.1\|2657304_2657406_-	hypothetical protein	NA	NA	NA	NA
WP_003099020.1\|2657496_2657991_-	hypothetical protein	A0A2K8HVL6	Pseudomonas_phage	2.7e-73	93.8
WP_003099023.1\|2657987_2659985_-	DNA cytosine methyltransferase	A0A140IES2	Pseudomonas_phage	0.0e+00	91.1
WP_124171382.1\|2660100_2660427_+	hypothetical protein	NA	NA	NA	NA
WP_003099025.1\|2660594_2662340_-	AAA family ATPase	H2BD46	Pseudomonas_phage	1.6e-298	94.1
WP_003099027.1\|2662343_2663333_-	cell division protein FtsK	H2BD47	Pseudomonas_phage	7.5e-91	61.1
WP_003099029.1\|2663345_2663546_-	hypothetical protein	J7I437	Pseudomonas_phage	2.5e-30	98.5
WP_003099031.1\|2663552_2664440_-	recombination protein RecT	Q858E1	Salmonella_phage	2.4e-104	73.6
WP_003099033.1\|2664452_2665361_-	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	1.6e-124	72.0
WP_003099035.1\|2665371_2665581_-	hypothetical protein	NA	NA	NA	NA
WP_003099037.1\|2665577_2665799_-	hypothetical protein	H2BD53	Pseudomonas_phage	1.2e-33	100.0
WP_003099039.1\|2665782_2665935_-	hypothetical protein	A0A2K8HR67	Pseudomonas_phage	1.5e-11	93.8
WP_003099041.1\|2666514_2666886_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	8.5e-64	100.0
WP_071538254.1\|2667062_2667701_+	acetyltransferase	NA	NA	NA	NA
WP_020750452.1\|2667803_2668016_-	hypothetical protein	L7TKR9	Pseudomonas_virus	5.8e-33	97.1
WP_003099044.1\|2668071_2668314_-	hypothetical protein	NA	NA	NA	NA
WP_003099046.1\|2668351_2668555_-	hypothetical protein	NA	NA	NA	NA
WP_003099049.1\|2668554_2668746_-	hypothetical protein	NA	NA	NA	NA
WP_003099051.1\|2668936_2669143_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	8.7e-34	95.6
WP_003103353.1\|2669153_2669456_-	hypothetical protein	A0A0U4B0I0	Pseudomonas_phage	6.3e-49	98.0
WP_003103354.1\|2669805_2670681_-	hypothetical protein	NA	NA	NA	NA
WP_003103356.1\|2670677_2671559_-	hypothetical protein	NA	NA	NA	NA
WP_078451497.1\|2671536_2672091_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003103358.1\|2672200_2672404_+	Cro/Cl family transcriptional regulator	A0A0U1UNM4	Pseudomonas_phage	6.4e-13	61.7
WP_003103361.1\|2672643_2673135_-	hypothetical protein	J7HXA3	Pseudomonas_phage	7.5e-84	95.7
WP_003103363.1\|2673238_2673811_+	hypothetical protein	J7I4J9	Pseudomonas_phage	5.5e-102	100.0
WP_003103373.1\|2674747_2675356_+	hypothetical protein	A0A2H4J6S4	uncultured_Caudovirales_phage	3.4e-41	43.9
WP_003103374.1\|2675348_2675792_+	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	1.4e-76	98.6
WP_003103375.1\|2675820_2676690_+	hypothetical protein	J7HXH6	Pseudomonas_phage	2.9e-147	87.2
WP_003103376.1\|2676845_2677145_+	hypothetical protein	NA	NA	NA	NA
WP_003103377.1\|2677252_2677633_+	hypothetical protein	H2BDJ3	Pseudomonas_virus	4.8e-38	67.5
WP_003103378.1\|2677607_2677955_+\|holin	phage holin family protein	Q9MC42	Pseudomonas_phage	1.9e-25	61.3
WP_003103379.1\|2678021_2678477_+	hypothetical protein	NA	NA	NA	NA
WP_003103380.1\|2678534_2679134_+\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	3.3e-49	61.9
WP_020750445.1\|2679117_2680413_+\|terminase	phage terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-145	59.2
WP_003103384.1\|2680415_2681771_+	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	8.1e-96	45.8
WP_003103386.1\|2681767_2682847_+	hypothetical protein	A0A0S2SY77	Pseudomonas_phage	2.0e-201	97.8
WP_003103389.1\|2682975_2683719_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	2.2e-87	75.5
WP_003103391.1\|2683728_2684700_+	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	9.3e-110	64.7
WP_003103393.1\|2684741_2685227_+	hypothetical protein	NA	NA	NA	NA
WP_003103395.1\|2685210_2685675_+	hypothetical protein	H9EB35	Vibrio_phage	5.2e-10	39.3
WP_003103397.1\|2685674_2686064_+	hypothetical protein	A0A2H4JAS3	uncultured_Caudovirales_phage	2.8e-33	55.0
WP_003103399.1\|2686067_2686742_+	hypothetical protein	A0A0S2SY81	Pseudomonas_phage	1.3e-115	96.0
WP_003103401.1\|2686738_2687149_+	DUF4128 domain-containing protein	A0A1B0VMI0	Pseudomonas_phage	3.0e-25	44.1
WP_003103403.1\|2687216_2687870_+\|tail	phage tail protein	A0A2H4IZV5	uncultured_Caudovirales_phage	4.5e-60	52.8
WP_003103406.1\|2687879_2688260_+\|tail	phage tail assembly chaperone	A0A2H4IYQ5	uncultured_Caudovirales_phage	7.0e-29	51.2
WP_003103408.1\|2688322_2688586_+	DUF1799 domain-containing protein	A0A2R3UAE2	Siphoviridae_environmental_samples	3.6e-16	46.0
WP_003103414.1\|2688582_2691774_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	2.2e-155	41.1
WP_003103417.1\|2691779_2692118_+\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	1.5e-59	98.2
WP_003158546.1\|2692114_2692864_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	4.7e-146	98.0
WP_003103422.1\|2692866_2693625_+	C40 family peptidase	A0A0S2SY75	Pseudomonas_phage	5.7e-147	97.2
WP_003158545.1\|2694146_2694731_+\|tail	tail assembly protein	A0A0S2SYS2	Pseudomonas_phage	1.1e-100	96.9
WP_020750444.1\|2695066_2695759_+	hypothetical protein	NA	NA	NA	NA
WP_003106739.1\|2695818_2699379_+	DUF1983 domain-containing protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	75.7
WP_071536682.1\|2699375_2699660_+	hypothetical protein	NA	NA	NA	NA
WP_003106740.1\|2700549_2701317_+	hypothetical protein	A0A2H4J1J6	uncultured_Caudovirales_phage	7.9e-56	51.4
WP_003106743.1\|2701359_2701989_+	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	2.7e-110	95.2
WP_020750441.1\|2701985_2702354_+	hypothetical protein	H2BDD6	Pseudomonas_virus	2.0e-41	78.7
WP_003102452.1\|2702350_2702614_+	hypothetical protein	A0A0U4B0B7	Pseudomonas_phage	3.7e-37	97.7
WP_003102455.1\|2702649_2702916_+	hypothetical protein	L7TP56	Pseudomonas_virus	1.8e-44	98.9
WP_003102456.1\|2702897_2703584_-	SOS response-associated peptidase	A0A2K8I970	Pseudomonas_phage	1.0e-118	87.7
WP_003102458.1\|2703621_2704137_-	hypothetical protein	L7TIE6	Pseudomonas_virus	5.8e-95	94.7
2704366:2704457	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2973076 : 3011539

Planktothrix_phage(33.33%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003103608.1\|2973076_2974360_-\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA
WP_003103610.1\|2974382_2975729_-\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_020750571.1\|2975944_2977579_+	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_020989355.1\|2977627_2979052_-	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_003103616.1\|2979057_2981049_-	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	5.3e-35	39.3
WP_003089547.1\|2981048_2982224_-	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_003158770.1\|2982324_2983320_-	FecR family protein	NA	NA	NA	NA
WP_003103620.1\|2983483_2983963_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003103622.1\|2984095_2985427_+	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_003103624.1\|2985549_2987838_+	acylase	NA	NA	NA	NA
WP_003124571.1\|2988383_2989304_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003104946.1\|2989400_2990552_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003089526.1\|2990618_2990861_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003104944.1\|2991155_2991392_+	hypothetical protein	NA	NA	NA	NA
WP_003089521.1\|2991657_2992128_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003104941.1\|2992124_2994440_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003104937.1\|2994856_2996062_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003104935.1\|2996262_2996904_-	response regulator transcription factor	NA	NA	NA	NA
WP_003089513.1\|2997180_2997576_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003104933.1\|2997598_2998135_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_003104932.1\|2998145_3000152_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.7e-41	29.3
WP_003104930.1\|3000151_3000340_-	hypothetical protein	NA	NA	NA	NA
WP_003122693.1\|3000499_3001072_-	hypothetical protein	NA	NA	NA	NA
WP_003104929.1\|3001093_3003643_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.2e-76	29.4
WP_003104928.1\|3003644_3004661_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_003104926.1\|3004624_3006418_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003122696.1\|3006401_3006827_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003089495.1\|3006839_3007337_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003089494.1\|3007410_3008895_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003089493.1\|3008917_3009463_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003104701.1\|3009671_3010148_+	hypothetical protein	NA	NA	NA	NA
WP_020750612.1\|3010207_3011539_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_7

3181042 : 3210932

uncultured_Caudovirales_phage(30.77%)

integrase,plate,transposase,tail

attL 3200790:3200808|attR 3218695:3218713

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003100881.1\|3181042_3184009_-\|transposase	Tn3-like element ISPa38 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
WP_001247892.1\|3184167_3184458_+	nucleotidyltransferase	NA	NA	NA	NA
WP_003100872.1\|3184454_3184841_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_003465043.1\|3185077_3185434_+	cupin domain-containing protein	NA	NA	NA	NA
WP_003100858.1\|3185688_3186015_+	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|3186011_3186512_+	hypothetical protein	NA	NA	NA	NA
WP_003100853.1\|3186508_3186880_+	hypothetical protein	NA	NA	NA	NA
WP_003100847.1\|3186873_3187431_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003117254.1\|3187761_3188565_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	9.9e-33	35.4
WP_003117256.1\|3189089_3190154_+	hypothetical protein	A0A2H4J9E6	uncultured_Caudovirales_phage	8.2e-152	72.8
WP_003117257.1\|3190171_3190696_+\|plate	phage baseplate assembly protein	A0A2H4JFE0	uncultured_Caudovirales_phage	7.8e-63	67.2
WP_003117258.1\|3190762_3191113_+	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	4.2e-36	67.2
WP_170952975.1\|3191126_3192185_+\|plate	baseplate J/gp47 family protein	A0A2H4JC98	uncultured_Caudovirales_phage	1.7e-69	42.0
WP_003117260.1\|3192181_3192757_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	3.1e-28	39.0
WP_023121563.1\|3192756_3193968_+	hypothetical protein	NA	NA	NA	NA
WP_170952977.1\|3194054_3194513_+\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	1.3e-21	46.7
WP_003117263.1\|3194517_3195819_-	pyrroloquinoline quinone biosynthesis protein PqqF	A0A1V0SJA4	Klosneuvirus	1.7e-13	24.4
WP_003117264.1\|3195972_3196899_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003117265.1\|3197152_3198973_+	DUF1302 domain-containing protein	NA	NA	NA	NA
WP_003117266.1\|3198975_3200322_+	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_003117267.1\|3200383_3201775_+	DUF1254 domain-containing protein	M1I2Z8	Paramecium_bursaria_Chlorella_virus	5.1e-53	32.2
3200790:3200808	attL	NA	NA	NA	NA
WP_023121564.1\|3201925_3202972_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003117269.1\|3203115_3203376_-	hypothetical protein	NA	NA	NA	NA
WP_003117270.1\|3203435_3204686_-	chromate resistance efflux protein ChrA	NA	NA	NA	NA
WP_003117271.1\|3204856_3205801_-	chromate resistance protein	NA	NA	NA	NA
WP_003117272.1\|3206076_3206637_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	3.1e-57	95.2
WP_003117273.1\|3206640_3209607_+\|transposase	Tn3-like element ISPa40 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	92.6
WP_003111050.1\|3209960_3210932_+\|integrase	site-specific integrase	NA	NA	NA	NA
3218695:3218713	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4895784 : 4980251

Pseudomonas_virus(70.45%)

capsid,portal,plate,terminase,protease,integrase,tRNA,lysis,tail,head,holin

attL 4943696:4943742|attR 4980418:4980464

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003085581.1\|4895784_4896189_+\|protease	protease inhibitor I42 family protein	NA	NA	NA	NA
WP_003101979.1\|4896287_4897040_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003085577.1\|4897171_4897744_+	hypothetical protein	NA	NA	NA	NA
WP_003123029.1\|4897848_4898589_+	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A1B0XTP2	Freshwater_phage	6.4e-10	26.4
WP_003085573.1\|4898585_4899554_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_003101974.1\|4899642_4900389_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_003101972.1\|4900381_4901083_-	DNA repair protein RecO	NA	NA	NA	NA
WP_003085566.1\|4901143_4902061_-	GTPase Era	NA	NA	NA	NA
WP_003085565.1\|4902053_4902743_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.2e-24	31.4
WP_003085562.1\|4902739_4903117_-	DUF4845 domain-containing protein	NA	NA	NA	NA
WP_003101969.1\|4903285_4904140_-	signal peptidase I	NA	NA	NA	NA
WP_003101967.1\|4904145_4905945_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	1.1e-20	38.5
WP_003101964.1\|4906094_4907519_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	3.4e-28	32.0
WP_003101962.1\|4907558_4908014_-	SoxR reducing system RseC family protein	NA	NA	NA	NA
WP_003101960.1\|4908010_4908961_-	sigma factor AlgU regulatory protein MucB	NA	NA	NA	NA
WP_003101958.1\|4908969_4909554_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA
WP_003085543.1\|4909585_4910167_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_003101954.1\|4910575_4912192_+	L-aspartate oxidase	NA	NA	NA	NA
WP_003101950.1\|4912160_4912613_-	hypothetical protein	NA	NA	NA	NA
WP_003085532.1\|4912596_4912851_-	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_003101947.1\|4913123_4914068_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_003085528.1\|4914168_4915005_+	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	2.5e-26	36.6
WP_003101943.1\|4915013_4916396_-	sensor histidine kinase	NA	NA	NA	NA
WP_003085524.1\|4916388_4917060_-	response regulator	NA	NA	NA	NA
WP_003101939.1\|4917270_4918554_+	OprD family porin	NA	NA	NA	NA
WP_003085519.1\|4918583_4919567_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003101933.1\|4919615_4920086_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_003116509.1\|4920096_4921614_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_003106435.1\|4921606_4922644_+	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_003106436.1\|4922770_4923466_-	uracil-DNA glycosylase	A0A0A7D9F8	Equid_alphaherpesvirus	1.0e-49	45.2
WP_003106439.1\|4923565_4924387_-	VanW family protein	NA	NA	NA	NA
WP_003106441.1\|4924443_4925325_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003106449.1\|4925457_4926966_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_003085499.1\|4926977_4928141_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_003085498.1\|4928206_4929025_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_003106451.1\|4929083_4930187_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003116513.1\|4930298_4931195_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_003085490.1\|4931251_4931896_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_003098346.1\|4932011_4932653_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_003098348.1\|4932687_4934664_-	alkyl/aryl-sulfatase	M1I0S7	Paramecium_bursaria_Chlorella_virus	3.1e-160	44.8
WP_003098349.1\|4934766_4935681_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003098351.1\|4935684_4935873_-	hypothetical protein	NA	NA	NA	NA
WP_003085479.1\|4935995_4936241_-	DUF1145 domain-containing protein	NA	NA	NA	NA
WP_003098353.1\|4936356_4936806_-	hypothetical protein	NA	NA	NA	NA
WP_003098355.1\|4936901_4937081_-	hypothetical protein	NA	NA	NA	NA
WP_003098356.1\|4937313_4938390_+	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_003098357.1\|4938386_4939202_+	DUF4824 family protein	NA	NA	NA	NA
WP_020989334.1\|4939222_4939495_+	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_003098362.1\|4939494_4940187_+	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA
WP_003098363.1\|4940322_4941366_+	L,D-transpeptidase	NA	NA	NA	NA
WP_003085453.1\|4941445_4942183_+	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_003098365.1\|4942634_4943537_+	alpha/beta hydrolase	NA	NA	NA	NA
4943696:4943742	attL	NA	NA	NA	NA
WP_003098368.1\|4944529_4945255_+	zeta toxin family protein	NA	NA	NA	NA
WP_162836249.1\|4945263_4945422_+	hypothetical protein	NA	NA	NA	NA
WP_003098370.1\|4945492_4946548_-\|portal	phage portal protein	Q9ZXM6	Pseudomonas_virus	1.0e-194	96.0
WP_031299630.1\|4946547_4948308_-\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	0.0e+00	100.0
WP_003098374.1\|4948463_4949285_+\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	1.2e-129	96.0
WP_003098375.1\|4949320_4950337_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	8.6e-191	99.1
WP_003098376.1\|4950342_4951044_+\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	6.9e-123	97.9
WP_003098377.1\|4951147_4951609_+\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	2.8e-80	99.3
WP_003098378.1\|4951608_4951821_+\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	4.9e-32	94.1
WP_003098379.1\|4951845_4952199_+	hypothetical protein	Q9ZXL8	Pseudomonas_virus	6.0e-59	100.0
WP_003098380.1\|4952200_4952473_+\|holin	phage holin family protein	Q9ZXL7	Pseudomonas_virus	2.6e-38	97.8
WP_003098381.1\|4952469_4953276_+	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	5.4e-148	97.4
WP_003098382.1\|4953272_4953734_+\|lysis	LysB family phage lysis regulatory protein	Q9ZXL5	Pseudomonas_virus	8.1e-72	97.4
WP_003098383.1\|4953811_4954348_+\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	1.4e-94	98.3
WP_020750417.1\|4954340_4954799_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	1.6e-67	90.0
WP_003098385.1\|4954868_4955441_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	7.9e-93	90.5
WP_003098386.1\|4955437_4955782_+	GPW/gp25 family protein	Q9ZXK9	Pseudomonas_virus	1.4e-55	97.4
WP_003098387.1\|4955778_4956696_+\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	8.4e-145	87.8
WP_003098388.1\|4956692_4957310_+\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	7.7e-86	75.3
WP_003098390.1\|4959133_4959568_+\|tail	tail fiber assembly protein	Q9ZXK5	Pseudomonas_virus	1.5e-30	50.7
WP_003098391.1\|4959668_4960844_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	3.5e-220	99.0
WP_003098392.1\|4960900_4961416_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	3.9e-91	95.9
WP_003098393.1\|4961470_4961800_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	2.2e-47	93.6
WP_003098394.1\|4961808_4961928_+\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	1.8e-15	100.0
WP_023127624.1\|4961917_4964677_+\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	0.0e+00	92.2
WP_003098399.1\|4964681_4965122_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	1.8e-76	99.3
WP_003098400.1\|4965118_4966384_+	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	1.9e-235	97.9
WP_020750418.1\|4966411_4967593_-	hypothetical protein	A0A291AUQ1	Sinorhizobium_phage	3.9e-54	31.3
WP_020750419.1\|4967576_4968668_-	nucleoid-associated protein	A0A291AUQ0	Sinorhizobium_phage	1.2e-68	43.3
WP_128568923.1\|4968795_4969203_-	hypothetical protein	NA	NA	NA	NA
WP_003098404.1\|4969251_4969716_-	BRCT domain-containing protein	NA	NA	NA	NA
WP_100209530.1\|4969752_4970184_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020750421.1\|4970249_4970480_+	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA
WP_003098407.1\|4970509_4970980_+	hypothetical protein	Q9ZXJ2	Pseudomonas_virus	6.8e-74	96.2
WP_003098408.1\|4970976_4971270_+	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.1e-50	99.0
WP_003098409.1\|4971266_4971617_+	hypothetical protein	NA	NA	NA	NA
WP_003098410.1\|4971688_4971922_+	hypothetical protein	Q9ZXI9	Pseudomonas_virus	7.8e-39	100.0
WP_162290916.1\|4971918_4974639_+	toprim domain-containing protein	Q9ZXI8	Pseudomonas_virus	0.0e+00	99.1
WP_003098413.1\|4974683_4974956_+	hypothetical protein	NA	NA	NA	NA
WP_003098415.1\|4975015_4975369_+	hypothetical protein	Q9ZXI7	Pseudomonas_virus	3.8e-61	97.4
WP_003098417.1\|4975380_4975587_+	TraR/DksA family transcriptional regulator	Q9ZXI6	Pseudomonas_virus	7.3e-33	100.0
WP_003098418.1\|4975890_4977801_+	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	2.1e-259	88.3
WP_003098420.1\|4978104_4978281_+	hypothetical protein	Q38017	Pseudomonas_virus	5.5e-05	70.6
WP_003098421.1\|4978277_4978646_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	3.6e-30	50.4
WP_003098423.1\|4978838_4979042_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_003098425.1\|4979048_4980251_-\|integrase	integrase family protein	A0A248SL35	Klebsiella_phage	3.8e-36	30.9
4980418:4980464	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_LR739068.1|WP_003158163.1|5387240_5387615_+|hypothetical-protein

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Acr_ID: NZ_LR739068.1|WP_003158160.1|5389356_5389749_+|hypothetical-protein

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Acr_ID: NZ_LR739068.1|WP_003158159.1|5389767_5390091_+|hypothetical-protein

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Acr_ID: NZ_LR739068.1|WP_162836249.1|4945263_4945422_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_LR739068.1|WP_003158163.1|5387240_5387615_+|hypothetical-protein

5387240_5387615_+

124 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|27	1.0	1	1.0

NZ_LR739068.1|WP_003158160.1|5389356_5389749_+|hypothetical-protein

5389356_5389749_+

130 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|3	0.4251968503937008	0.9307692307692308	0.8785714285714286

NZ_LR739068.1|WP_003158159.1|5389767_5390091_+|hypothetical-protein

5389767_5390091_+

107 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|15	0.6213592233009708	0.9719626168224299	0.99

NZ_LR739068.1|WP_162836249.1|4945263_4945422_+|hypothetical-protein

4945263_4945422_+

52 aa aa

4895784-4980251

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LR739068_2	Orphan	2.4\|1522442\|32\|NZ_LR739068\|PILER-CR,CRISPRCasFinder,CRT	1522442-1522473	32	4963482-4963513	0

1. spacer 2.4|1522442|32|NZ_LR739068|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR739068 position: 4963482-4963513, mismatch: 0

tgaaggccaacccgcaagtcagcaagggcatc	CRISPR spacer
tgaaggccaacccgcaagtcagcaagggcatc	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR739068

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information