CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR739071	Pseudomonas aeruginosa strain C7-25 isolate C7-25 chromosome C7-25	3 crisprs	csa3,DEDDh,cas3,RT,DinG,WYL	0	1	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR739071_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR739071_1

338871-338984

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR739071_1

>merge|NZ_LR739071|1|338871-338984|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_LR739071|1|1|338871-338984|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR739071.1\|WP_003112937.1\|328803_330180_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_LR739071.1\|WP_003118762.1\|344164_344776_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_LR739071.1\|WP_003084299.1\|334161_335265_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LR739071.1\|WP_003084290.1\|331251_332610_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_LR739071.1\|WP_003112938.1\|330458_331211_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_LR739071.1\|WP_128654515.1\|348154_348649_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_LR739071.1\|WP_003121723.1\|346614_347313_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_LR739071.1\|WP_003118763.1\|344774_345794_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_LR739071.1\|WP_010792028.1\|343556_344060_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739071.1\|WP_003084297.1\|332675_334046_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_LR739071.1\|WP_128654516.1\|340027_342415_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_LR739071.1\|WP_003084327.1\|347334_347889_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739071.1\|WP_003121702.1\|326758_327424_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LR739071.1\|WP_003084320.1\|345813_346566_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739071.1\|WP_003118141.1\|335683_336781_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LR739071.1\|WP_003107781.1\|327486_328548_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_LR739071.1\|WP_003111119.1\|325717_326596_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_LR739071.1\|WP_033956749.1\|348651_349344_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LR739071.1\|WP_003112941.1\|342525_343578_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_LR739071.1\|WP_003084303.1\|336835_337990_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226

Protein	Function_ID	Function_description	E-value
NZ_LR739071.1\|WP_003112937.1\|328803_330180_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_LR739071.1\|WP_003118762.1\|344164_344776_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_LR739071.1\|WP_003084299.1\|334161_335265_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_LR739071.1\|WP_003084290.1\|331251_332610_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_LR739071.1\|WP_003112938.1\|330458_331211_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_LR739071.1\|WP_128654515.1\|348154_348649_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	1.50082e-66
NZ_LR739071.1\|WP_003121723.1\|346614_347313_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	9.16398e-77
NZ_LR739071.1\|WP_003118763.1\|344774_345794_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NZ_LR739071.1\|WP_003084297.1\|332675_334046_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_LR739071.1\|WP_128654516.1\|340027_342415_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_LR739071.1\|WP_003121702.1\|326758_327424_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.12191e-09
NZ_LR739071.1\|WP_003118141.1\|335683_336781_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_LR739071.1\|WP_003107781.1\|327486_328548_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_LR739071.1\|WP_003111119.1\|325717_326596_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_LR739071.1\|WP_033956749.1\|348651_349344_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.50703e-78
NZ_LR739071.1\|WP_003112941.1\|342525_343578_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_LR739071.1\|WP_003084303.1\|336835_337990_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0

>NZ_LR739071.1|WP_003084303.1|336835_337990_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_LR739071.1|WP_003118141.1|335683_336781_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVISKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_LR739071.1|WP_003084299.1|334161_335265_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_LR739071.1|WP_003084297.1|332675_334046_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_LR739071.1|WP_003084290.1|331251_332610_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_LR739071.1|WP_003112938.1|330458_331211_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_LR739071.1|WP_003112937.1|328803_330180_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_LR739071.1|WP_003107781.1|327486_328548_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_LR739071.1|WP_003121702.1|326758_327424_-|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARDLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLAGFISDLNR
>NZ_LR739071.1|WP_003111119.1|325717_326596_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_LR739071.1|WP_128654516.1|340027_342415_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSACQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAADADSPWWDDRRTERRETRADIVRAAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_LR739071.1|WP_003112941.1|342525_343578_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_LR739071.1|WP_010792028.1|343556_344060_-|hypothetical-protein
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAENVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_LR739071.1|WP_003118762.1|344164_344776_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_LR739071.1|WP_003118763.1|344774_345794_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_LR739071.1|WP_003084320.1|345813_346566_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_LR739071.1|WP_003121723.1|346614_347313_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAGIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLRVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_LR739071.1|WP_003084327.1|347334_347889_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_LR739071.1|WP_128654515.1|348154_348649_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEFAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_LR739071.1|WP_033956749.1|348651_349344_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALPLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NZ_LR739071_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR739071_2

1936230-1936331

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LR739071_2

>merge|NZ_LR739071|2|1936230-1936331|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_LR739071|2|2|1936230-1936331|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR739071.1\|WP_003116401.1\|1943784_1944684_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_LR739071.1\|WP_003114812.1\|1940066_1940630_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_LR739071.1\|WP_003114806.1\|1927450_1928254_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_LR739071.1\|WP_003091534.1\|1941445_1942375_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LR739071.1\|WP_003116398.1\|1933404_1935204_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_LR739071.1\|WP_003114814.1\|1943038_1943680_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_LR739071.1\|WP_128654498.1\|1936466_1937591_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_LR739071.1\|WP_003091533.1\|1942574_1942892_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739071.1\|WP_016263235.1\|1940611_1941439_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_LR739071.1\|WP_003091546.1\|1931659_1933315_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_LR739071.1\|WP_003109184.1\|1938171_1940004_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR739071.1\|WP_003114810.1\|1935200_1935827_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_LR739071.1\|WP_003116397.1\|1926452_1927310_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_LR739071.1\|WP_003114807.1\|1928257_1929619_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_LR739071.1\|WP_003109182.1\|1935935_1936094_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_LR739071.1\|WP_128654499.1\|1930276_1931134_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_LR739071.1\|WP_003091540.1\|1937623_1937890_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_LR739071.1\|WP_003109191.1\|1944693_1945029_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_LR739071.1\|WP_003091551.1\|1929761_1929983_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_LR739071.1\|WP_003091547.1\|1931351_1931663_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704

Protein	Function_ID	Function_description	E-value
NZ_LR739071.1\|WP_003116401.1\|1943784_1944684_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_LR739071.1\|WP_003114812.1\|1940066_1940630_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_LR739071.1\|WP_003114806.1\|1927450_1928254_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101
NZ_LR739071.1\|WP_003091534.1\|1941445_1942375_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_LR739071.1\|WP_003116398.1\|1933404_1935204_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_LR739071.1\|WP_003114814.1\|1943038_1943680_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_LR739071.1\|WP_128654498.1\|1936466_1937591_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_LR739071.1\|WP_016263235.1\|1940611_1941439_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.13225e-42
NZ_LR739071.1\|WP_003091546.1\|1931659_1933315_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_LR739071.1\|WP_003109184.1\|1938171_1940004_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_LR739071.1\|WP_003114810.1\|1935200_1935827_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_LR739071.1\|WP_003116397.1\|1926452_1927310_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_LR739071.1\|WP_003109182.1\|1935935_1936094_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_LR739071.1\|WP_128654499.1\|1930276_1931134_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.37437e-116
NZ_LR739071.1\|WP_003091540.1\|1937623_1937890_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_LR739071.1\|WP_003109191.1\|1944693_1945029_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_LR739071.1\|WP_003091551.1\|1929761_1929983_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_LR739071.1\|WP_003091547.1\|1931351_1931663_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48

>NZ_LR739071.1|WP_003109182.1|1935935_1936094_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_LR739071.1|WP_003114810.1|1935200_1935827_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_LR739071.1|WP_003116398.1|1933404_1935204_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_LR739071.1|WP_003091546.1|1931659_1933315_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_LR739071.1|WP_003091547.1|1931351_1931663_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_LR739071.1|WP_128654499.1|1930276_1931134_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKEFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_LR739071.1|WP_003091551.1|1929761_1929983_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_LR739071.1|WP_003114807.1|1928257_1929619_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_LR739071.1|WP_003114806.1|1927450_1928254_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_LR739071.1|WP_003116397.1|1926452_1927310_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_LR739071.1|WP_128654498.1|1936466_1937591_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAVEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_LR739071.1|WP_003091540.1|1937623_1937890_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_LR739071.1|WP_003109184.1|1938171_1940004_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_LR739071.1|WP_003114812.1|1940066_1940630_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_LR739071.1|WP_016263235.1|1940611_1941439_-|alpha/beta-fold-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGHYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRIIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_LR739071.1|WP_003091534.1|1941445_1942375_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_LR739071.1|WP_003091533.1|1942574_1942892_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_LR739071.1|WP_003114814.1|1943038_1943680_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_LR739071.1|WP_003116401.1|1943784_1944684_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_LR739071.1|WP_003109191.1|1944693_1945029_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

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Click the colored protein region to show detailed information

Crispr_ID: NZ_LR739071_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR739071_3

5665644-5665738

Orphan

Consensus_repeat	Method
GCCGACAACGGCAGCGAGCAGACCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR739071_3

>merge|NZ_LR739071|3|5665644-5665738|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGTCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAACAGACCGT

>NZ_LR739071|3|3|5665644-5665738|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGT	CGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTG
GCCGACAACGGCAGCGAACAGACCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR739071.1\|WP_003095513.1\|5667332_5667956_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR739071.1\|WP_003161885.1\|5664705_5665239_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_LR739071.1\|WP_003123551.1\|5672788_5673889_-\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812
NZ_LR739071.1\|WP_003095496.1\|5661523_5662336_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	unknown	unknown	gnl\|CDD\|226231
NZ_LR739071.1\|WP_162288716.1\|5665900_5666668_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_LR739071.1\|WP_003095492.1\|5660969_5661377_-\|Rho-termination-factor-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377850
NZ_LR739071.1\|WP_003121125.1\|5655499_5656363_-\|oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|225311
NZ_LR739071.1\|WP_003095483.1\|5659953_5660493_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_LR739071.1\|WP_003121132.1\|5671679_5672792_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|225779
NZ_LR739071.1\|WP_003099516.1\|5668761_5670153_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_LR739071.1\|WP_003107570.1\|5674047_5674677_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_LR739071.1\|WP_003095515.1\|5668093_5668783_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_LR739071.1\|WP_003136910.1\|5658194_5659211_-\|IS110-like-element-ISPa11-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_LR739071.1\|WP_003095526.1\|5674906_5675410_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_LR739071.1\|WP_058181180.1\|5662337_5664407_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_LR739071.1\|WP_003099398.1\|5656570_5657836_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_LR739071.1\|WP_003095519.1\|5670143_5671460_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_LR739071.1\|WP_003161310.1\|5666664_5667279_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_LR739071.1\|WP_003095479.1\|5659382_5659799_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183165
NZ_LR739071.1\|WP_003095488.1\|5660581_5660926_+\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058

Protein	Function_ID	Function_description	E-value
NZ_LR739071.1\|WP_003161885.1\|5664705_5665239_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	1.30318e-50
NZ_LR739071.1\|WP_003123551.1\|5672788_5673889_-\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.98791e-87
NZ_LR739071.1\|WP_003095496.1\|5661523_5662336_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.65802e-48
NZ_LR739071.1\|WP_162288716.1\|5665900_5666668_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	8.76702e-95
NZ_LR739071.1\|WP_003095492.1\|5660969_5661377_-\|Rho-termination-factor-N-terminal-domain-containing-protein	gnl\|CDD\|377850	pfam07498, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).	0.000208897
NZ_LR739071.1\|WP_003121125.1\|5655499_5656363_-\|oxaloacetate-decarboxylase	gnl\|CDD\|225311	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism].	1.3777e-87
NZ_LR739071.1\|WP_003095483.1\|5659953_5660493_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	5.52525e-29
NZ_LR739071.1\|WP_003121132.1\|5671679_5672792_-\|fatty-acid-desaturase	gnl\|CDD\|225779	COG3239, DesA, Fatty acid desaturase [Lipid metabolism].	7.76501e-66
NZ_LR739071.1\|WP_003099516.1\|5668761_5670153_+\|sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_LR739071.1\|WP_003107570.1\|5674047_5674677_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	4.59942e-41
NZ_LR739071.1\|WP_003095515.1\|5668093_5668783_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.43467e-112
NZ_LR739071.1\|WP_003136910.1\|5658194_5659211_-\|IS110-like-element-ISPa11-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.93861e-53
NZ_LR739071.1\|WP_003095526.1\|5674906_5675410_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.44267e-58
NZ_LR739071.1\|WP_058181180.1\|5662337_5664407_-\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0
NZ_LR739071.1\|WP_003099398.1\|5656570_5657836_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_LR739071.1\|WP_003095519.1\|5670143_5671460_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.70918e-108
NZ_LR739071.1\|WP_003161310.1\|5666664_5667279_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.20616e-69
NZ_LR739071.1\|WP_003095479.1\|5659382_5659799_-\|hypothetical-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.76735e-18
NZ_LR739071.1\|WP_003095488.1\|5660581_5660926_+\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	1.90142e-51

>NZ_LR739071.1|WP_003161885.1|5664705_5665239_+|bacterioferritin
MTTAQLTDVQTLRDRARKNIQEGAVTEGYSADRQTVLRLLNEALATELVCFLRYKRHYFMATGLKASIAAAEFLEHANQEMQHADQLAERIMQLGGEPDFNPRGLEERSHAEYVEGKTLKDMVTENLIAERIAIDSYREIITYLGNDDPTTRRIFEEILAQEEEHADDMADILDDLA
>NZ_LR739071.1|WP_058181180.1|5662337_5664407_-|AsmA-family-protein
MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLVVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLAPLPLLWQTIRIPQIKLTQPRAELLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLAGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR
>NZ_LR739071.1|WP_003095496.1|5661523_5662336_+|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR
MLTIGQLARIFEISTKTLRHYDAIGLFVPARTGSDNGYRYYQPEQIEQLSRILALRRLDVPLEAIDRLKRDGALDDPQRLRHFLQRHQHTLREEISARQRLLAELDRTLATLAHWRIRNMHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHDPEVSYGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPIY
>NZ_LR739071.1|WP_003095492.1|5660969_5661377_-|Rho-termination-factor-N-terminal-domain-containing-protein
MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMTREELMQLARKRDIRGRSTMRKAELIEALSRA
>NZ_LR739071.1|WP_003095488.1|5660581_5660926_+|osmotically-inducible-lipoprotein-OsmE
MYKQSLAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDARP
>NZ_LR739071.1|WP_003095483.1|5659953_5660493_+|MOSC-domain-containing-protein
MQQVIAVSLCATHAFSKQVRPAIRLLKGLGVEGDAHHGVTVKHRSRVRQDPTQPNLRQVHLIHEELHDELRASGFAIGPGTMGENITTRGVDLLGLPTGTRLRLGESALVELTGLRNPCSQLDNYQPGLTAAVLGRDEQGNLIRKAGVMAIVLEDGEVRPGDAIDIQLPPLPHRALEKV
>NZ_LR739071.1|WP_003095479.1|5659382_5659799_-|hypothetical-protein
MNILRIPMFVLAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPAGGKATAQQEKMKSCNADASAKSLKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALKGDERKAFMSTCLKK
>NZ_LR739071.1|WP_003136910.1|5658194_5659211_-|IS110-like-element-ISPa11-family-transposase
MNLSRIGLDLAKQVFQVHGVDRHEHVVCRRQLKRAQVRDFFRQLPPCLVAMEACGSAHYWARELRELGHTVRLIAPQFVKPYVKGDKHDAHDAEAICEAASRPSMRYVPVKSAEQQAVQSMHRVRSRLVRARTALCNEVRGLLGEFGLIATRRGRAATMALLETVMATEPASLPAPMGELLRELKDELQTLEARIARLERQIQAHVRGDARIQRLLAVEGIGPISASAVAASAGDARQFRTGRQFAAWLGLVPRQHSTGGQQRLGNISKRGDTYLRTLLIHGARAVVRCCANKTDARSRWLQGLLQRRPANVVAVALANKNARILWALLSRETCYRPG
>NZ_LR739071.1|WP_003099398.1|5656570_5657836_+|Hsp70-family-protein
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRLMRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDYERCIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG
>NZ_LR739071.1|WP_003121125.1|5655499_5656363_-|oxaloacetate-decarboxylase
MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE
>NZ_LR739071.1|WP_162288716.1|5665900_5666668_-|molybdopterin-dependent-oxidoreductase
MKGPEKKRAKIAIDPSSERQMVDLQRRLLLCGGLSLGALAMLSGYRLQDGDSVDKVLWAMSRWNDRVQAWLFSRTRLAPTFDPSQVASPFPFNAFYPAYNVPEIDLPEYRLQVSGRVRDKRPWSLEQLRRLPQASQVTQLICIEGWSAIGQWSGVPLRTFLELVGADTSAKYVGFKCADRYYSSLDMPSALHPQTLLALAMSGQALPEENGYPLRLRIPTKLGFKNAKHVVEIFVSNSNPGGYWEDQGYNWFSGV
>NZ_LR739071.1|WP_003161310.1|5666664_5667279_-|cytochrome-b/b6-domain-containing-protein
MNRALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAMWLLLGNGLCYLAHGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYWLVLALGALLVLSGLAIWKPVQLHGLTALFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLVPRTLLPMIIGREWRRGRRSEG
>NZ_LR739071.1|WP_003095513.1|5667332_5667956_-|hypothetical-protein
MLRLKASPALLFGLLLASAASFAAQPPAGMLQPLRGTIQQAADDHLQLKARNGQQLTVRLTDKTAIRAVSLAKPEDIQPDSFIGTAAVPQPDGTLKALEVHVFAPSLRGSGEGHRPWENADGSASTMTNGTVGNLVVSQGRRMTVKYGDGEKTVVVPDDVPIVSLEPGERSLLKPGAKVVLFPQKGADGSLTALAISVGKDGVTPPM
>NZ_LR739071.1|WP_003095515.1|5668093_5668783_+|heavy-metal-response-regulator-transcription-factor
MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGWQIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDMNFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEERPCPPAAP
>NZ_LR739071.1|WP_003099516.1|5668761_5670153_+|sensor-histidine-kinase
MPARRSLTLYAALLFAAVAALVVSAVGFYLYRSVEEAMLRRSDVMVAGRVEHFRNLLRDNLTLAELKARPRLFENMLGNEQDILLLGQPGEAPIVAVNPRHERLPSLRVVAAGQALNPSVVHAALTHDGIPMRVLAAEVLVGGREPLQITAAHLLLGETRMLAQYRDRVIAAVLLAFLGTALLGWLVLRHGLRPLRTLAAKAAEIHPTSLDTRLDVAAAPAELQQVAQSFNAMLERLDDGYQRLQQFSADLAHEIRTPIGSLMGHGQVALRQPRSNEEYQALIASNQEELERIARMVESILFLARADDVRAAVERSRLDLGEELRRQAEYFEGLAEERGLSLDVQVSGQLRADPQLFRRALSNLLANAIRYASADSLIEVRGLRRSGEFLLSVENACDRLPAEPLSRLFDRFYRGDAARSDAQSSGLGLAIVQAIMRLHGGRAEASAPAPGRIRFDLAFPAQD
>NZ_LR739071.1|WP_003095519.1|5670143_5671460_-|MFS-transporter
MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIRSYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLVLGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGAFYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPYWLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLVSGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAGEKPAQS
>NZ_LR739071.1|WP_003121132.1|5671679_5672792_-|fatty-acid-desaturase
MNRPASPAMRDDRELTPEQLAAFGAELDALRLRTLADLGADDARYIRRVRAAVRVCCWSGRALLMFGWLPPTWLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPEFAGRAYEWDIAGPSDFWRHTHNHIHHTYTNVLGKDDDVGYGVVRLFPEQRWKPFYRWQPLWVTLQALLFQYAVAIQHLRLDKYAKGRLDKAELMPLLRRLRAKLGRQWTKDYLLFPLLGLFAGGFGAVFVGNLLANVLRNLWTFTVIFCGHFTEKAVVFPPSVLEGETRGHWYLRQLRGSSNLEGGPLFHILTGNLSHQIEHHLYPDLPARRYAALSREVREIARRYGQTYNSGRLGRQFLTVLRRIWVYRLPPREPLPAGRG
>NZ_LR739071.1|WP_003123551.1|5672788_5673889_-|ferredoxin-reductase
MALLPLALLTPLLAPLRRLAARGWLREADVDGLLRHAHPLASLNRHYARVEARYWVADDMLALALRTAPGWPPARPGQHIQLLAERDGVRVGRSYSLTRVVGERLEIAVKRHPDGLLSPWLCEHLAVGQRVELQPAQGDLRWPMQAEAVCLLAAGSGLTPLLGLLREALENGYRGPVLWLHYVRHPGQRAWLGELEALAARHPNLELRWSLTRGARADGCLEGHFQPRHLDGWAADLARSQALACGPAAFVEAVGEQLGARFAGLQTESFSVPRWRSGEAPREVRLRFARSQREVSGDSAASLLEQAEAHGLRPAHGCRQGICASCTCVLLSGCVRDLRSGALCSEPGQPIRLCVSAAHGDLALDL
>NZ_LR739071.1|WP_003107570.1|5674047_5674677_+|TetR-family-transcriptional-regulator
MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLPG
>NZ_LR739071.1|WP_003095526.1|5674906_5675410_+|urease-accessory-protein-UreE
MLVIHQRLPARSPRWDEELHLTYEARSKSRLRCFAASGEEVGLFLERGQPPLADGDCLEARDGRLVRVVARSERLLHVTCASPLELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGATVEAIEAPFQPEHGAYGGGHHHSHHGEAEFNYAPRLHQFGVRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR739071_2	2.1\|1936255\|52\|NZ_LR739071\|CRISPRCasFinder	1936255-1936306	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 2.1|1936255|52|NZ_LR739071|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

650771 : 692521

Pseudomonas_phage(72.5%)

head,capsid,integrase,tRNA,tail,terminase,portal,plate

attL 642210:642224|attR 663480:663494

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
642210:642224	attL	NA	NA	NA	NA
WP_003121829.1\|650771_651845_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	3.2e-47	38.9
WP_019725766.1\|652422_652605_+	type II toxin-antitoxin system HicA family toxin	A0A2H4JDU5	uncultured_Caudovirales_phage	2.2e-09	54.2
WP_019725767.1\|652637_653060_+	type II toxin-antitoxin system HicB family antitoxin	A0A2H4JFV9	uncultured_Caudovirales_phage	6.1e-26	46.7
WP_033946036.1\|653305_654277_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	3.1e-174	94.7
WP_033946051.1\|654261_654954_-	hypothetical protein	A0A1D9CA29	Salinivibrio_phage	6.5e-41	37.0
WP_025982284.1\|654950_655493_-	hypothetical protein	A0A0U4J942	Pseudomonas_phage	1.0e-81	87.1
WP_033946052.1\|655489_656413_-	hypothetical protein	NA	NA	NA	NA
WP_033946054.1\|656409_656886_-\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	1.6e-35	55.0
WP_079383073.1\|656882_659516_-\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	3.0e-187	61.8
WP_033946055.1\|659525_660050_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	8.0e-92	93.7
WP_033946056.1\|660042_661215_-\|plate	baseplate J/gp47 family protein	A0A0U4JJ14	Pseudomonas_phage	2.7e-212	93.1
WP_033946057.1\|661211_661529_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	1.3e-44	93.2
WP_174249855.1\|661525_663823_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	1.2e-229	75.7
663480:663494	attR	NA	NA	NA	NA
WP_031631844.1\|663926_664067_-	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	1.5e-18	91.3
WP_023107708.1\|664090_664387_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	1.6e-33	78.7
WP_025982285.1\|664490_664679_-	hypothetical protein	A0A1B0VMJ0	Pseudomonas_phage	1.1e-06	50.8
WP_023122752.1\|664895_665357_-	lysozyme	A0A0U4JP67	Pseudomonas_phage	4.6e-75	95.4
WP_019725783.1\|665353_665659_-	hypothetical protein	A0A0H5AUD7	Pseudomonas_phage	7.6e-10	38.6
WP_162288637.1\|665655_665868_-	TraR/DksA C4-type zinc finger protein	A0A0U4IIN4	Pseudomonas_phage	2.1e-30	88.4
WP_023122750.1\|665867_666317_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	4.0e-68	85.2
WP_023107713.1\|666320_667436_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	6.5e-176	83.3
WP_023126976.1\|667447_668116_-	hypothetical protein	A0A0U4ISN1	Pseudomonas_phage	6.4e-110	92.6
WP_023122747.1\|668108_668546_-\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	3.6e-69	88.3
WP_033946064.1\|668545_669007_-\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	3.8e-77	95.4
WP_033945133.1\|669104_669848_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	8.9e-121	91.5
WP_012074147.1\|669844_670867_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	1.1e-193	100.0
WP_019725791.1\|670866_671820_-\|capsid	GPO family capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	2.7e-146	100.0
WP_121411715.1\|671977_674026_+\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	0.0e+00	99.3
WP_025297580.1\|673937_674792_+\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	1.2e-129	97.9
WP_023122741.1\|674837_675098_+	ogr/Delta-like zinc finger family protein	U3PB63	Vibrio_phage	2.1e-13	47.6
WP_012074151.1\|675073_675283_-	hypothetical protein	NA	NA	NA	NA
WP_033945127.1\|675641_675923_-	hypothetical protein	A0A0U4B0R1	Pseudomonas_phage	1.3e-32	75.3
WP_012074153.1\|675919_676150_-	hypothetical protein	NA	NA	NA	NA
WP_012074154.1\|676146_676362_-	hypothetical protein	NA	NA	NA	NA
WP_025297579.1\|676348_676762_-	hypothetical protein	NA	NA	NA	NA
WP_012074155.1\|676829_677186_-	hypothetical protein	A0A0U4JXA4	Pseudomonas_phage	6.3e-32	56.4
WP_012074156.1\|677201_677603_-	hypothetical protein	A0A0U4IIM6	Pseudomonas_phage	3.4e-50	72.9
WP_012074157.1\|677574_677775_-	hypothetical protein	NA	NA	NA	NA
WP_033945125.1\|678205_680899_-	toprim domain-containing protein	A0A0U3TH43	Pseudomonas_phage	2.0e-303	56.0
WP_012074159.1\|680909_681152_-	hypothetical protein	A0A0U4KLD7	Pseudomonas_phage	4.0e-14	56.2
WP_012074160.1\|681245_681482_+	helix-turn-helix transcriptional regulator	A0A0U4ISL7	Pseudomonas_phage	1.0e-17	57.7
WP_128654480.1\|682706_686444_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
WP_003085035.1\|686550_688404_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_003121834.1\|688483_690478_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
WP_003085042.1\|690560_691010_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.0e-18	38.8
WP_003085057.1\|691079_691295_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003099590.1\|691495_692521_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.1

DBSCAN-SWA_2

725238 : 759718

Pseudomonas_phage(26.09%)

holin,tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003109047.1\|725238_726009_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	7.9e-72	59.0
WP_003085132.1\|726466_726667_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003085135.1\|726714_727074_+	hypothetical protein	NA	NA	NA	NA
WP_128654483.1\|727436_727886_+\|holin	holin	B5TK61	Pseudomonas_phage	6.5e-26	53.3
WP_003085139.1\|727907_728423_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003121844.1\|728419_728977_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
WP_023091414.1\|729129_729456_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	4.1e-30	60.2
WP_003085151.1\|729452_730340_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_003142803.1\|730332_730866_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	6.7e-62	64.6
WP_128654484.1\|730867_732973_+\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	1.9e-221	52.4
WP_016852415.1\|732980_733421_+	hypothetical protein	NA	NA	NA	NA
WP_003109051.1\|733463_734624_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.7e-188	83.4
WP_128654494.1\|734636_735140_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	6.8e-64	72.8
WP_003085178.1\|735154_735499_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_128654485.1\|735668_737906_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_003085182.1\|737915_738788_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-75	51.7
WP_003101635.1\|738762_738969_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003113193.1\|739026_740016_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
WP_003113192.1\|740048_740678_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_003121852.1\|740674_741037_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
WP_003118919.1\|741033_741291_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003101640.1\|741638_742244_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003085203.1\|742245_743295_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|743291_744128_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
WP_003085214.1\|744189_744834_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003085219.1\|745105_745528_+	OsmC family protein	NA	NA	NA	NA
WP_003085223.1\|745847_746642_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003085224.1\|746696_747344_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003085225.1\|747443_747782_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003101642.1\|747860_749342_+	AAA family ATPase	U5XJW0	Phormidium_phage	6.7e-67	33.5
WP_003113172.1\|749381_750182_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003459458.1\|750242_751319_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_023086833.1\|751440_752409_-	nitronate monooxygenase	NA	NA	NA	NA
WP_023086834.1\|752425_752848_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_023086835.1\|753138_754173_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003085249.1\|754172_754892_+	hypothetical protein	NA	NA	NA	NA
WP_003120826.1\|754892_755315_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085254.1\|755392_755743_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_004352281.1\|755796_756888_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_004352283.1\|756890_758234_-	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	3.0e-18	44.1
WP_003113167.1\|758518_759718_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_3

1491115 : 1500144

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1491115_1491751_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_003115226.1\|1491796_1492690_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1492794_1493799_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1494225_1494549_-	ferredoxin family protein	NA	NA	NA	NA
WP_003113873.1\|1494615_1497183_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003098486.1\|1497308_1498316_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1498463_1498970_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1499103_1500144_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_4

2397115 : 2405879

Pseudomonas_phage(57.14%)

integrase,tRNA

attL 2390901:2390914|attR 2404263:2404276

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2390901:2390914	attL	NA	NA	NA	NA
WP_003114778.1\|2397115_2398300_+	SpoIIE family protein phosphatase	Q56AR1	Bacillus_thuringiensis_phage	7.3e-08	31.9
WP_003104052.1\|2398296_2398779_+	STAS domain-containing protein	NA	NA	NA	NA
WP_003090868.1\|2398866_2399790_-	transaldolase	A0A1D8KMI9	Synechococcus_phage	6.5e-12	30.0
WP_016562059.1\|2399869_2400850_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_023118651.1\|2400993_2402148_+\|integrase	site-specific integrase	A0A2K8I325	Pseudomonas_phage	1.4e-120	58.6
WP_003130859.1\|2402121_2402397_-	pyocin activator PrtN family protein	A0A2K8HN48	Pseudomonas_phage	3.4e-25	65.5
WP_071534265.1\|2402406_2403153_-	DNA cytosine methyltransferase	A0A2I7QZY6	Vibrio_phage	5.2e-60	51.4
WP_152990849.1\|2403241_2403817_+	hypothetical protein	NA	NA	NA	NA
WP_058150439.1\|2403833_2404019_-	hypothetical protein	NA	NA	NA	NA
WP_014603877.1\|2404587_2404773_-	hypothetical protein	NA	NA	NA	NA
2404263:2404276	attR	NA	NA	NA	NA
WP_162288652.1\|2404884_2405514_+	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	1.8e-77	71.3
WP_162288653.1\|2405510_2405879_+	hypothetical protein	A0A0S2SY58	Pseudomonas_phage	4.0e-37	69.7

DBSCAN-SWA_5

2624929 : 2631823

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003160440.1\|2624929_2626210_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.8e-98	45.4
WP_003160439.1\|2626211_2627609_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097628.1\|2627613_2628588_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003097625.1\|2628675_2629659_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.0
WP_003119979.1\|2629655_2629991_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003090391.1\|2629987_2630293_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2630292_2630652_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|2630648_2631044_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|2631154_2631823_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_6

2935600 : 2974866

Planktothrix_phage(33.33%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012614137.1\|2935600_2936878_-\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA
WP_012614138.1\|2936889_2938248_-\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_031629095.1\|2938462_2940100_+	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_162288665.1\|2940148_2941573_-	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_003114506.1\|2941578_2943570_-	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	4.1e-35	39.3
WP_033987312.1\|2943569_2944745_-	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_019484937.1\|2944845_2945841_-	FecR family protein	NA	NA	NA	NA
WP_003103620.1\|2946004_2946484_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003114509.1\|2946617_2947949_+	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_003122686.1\|2948071_2950360_+	acylase	NA	NA	NA	NA
WP_003114511.1\|2950905_2951826_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003104946.1\|2951922_2953074_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003089526.1\|2953139_2953382_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003104944.1\|2953676_2953913_+	hypothetical protein	NA	NA	NA	NA
WP_003089521.1\|2954177_2954648_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003144022.1\|2954644_2956960_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003104937.1\|2957376_2958582_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003110901.1\|2958782_2959424_-	response regulator transcription factor	NA	NA	NA	NA
WP_128654544.1\|2959700_2960096_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003104933.1\|2960118_2960655_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_128654543.1\|2960665_2962672_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.5e-42	29.5
WP_003124577.1\|2962708_2963776_-	hypothetical protein	NA	NA	NA	NA
WP_003124578.1\|2963814_2964348_-	hypothetical protein	NA	NA	NA	NA
WP_034015020.1\|2964421_2966971_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	9.3e-77	29.4
WP_003114517.1\|2966972_2967989_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_003089497.1\|2967952_2969746_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003089496.1\|2969729_2970155_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003089495.1\|2970167_2970665_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003089494.1\|2970738_2972223_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003089493.1\|2972245_2972791_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003089492.1\|2972998_2973475_+	hypothetical protein	NA	NA	NA	NA
WP_023086221.1\|2973534_2974866_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_7

3680299 : 3683587

Pseudomonas_phage(71.43%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162288679.1\|3680299_3680812_+	hypothetical protein	Q5QF67	Pseudomonas_virus	1.2e-92	93.5
WP_022579894.1\|3680815_3681082_-	hypothetical protein	L7TP56	Pseudomonas_virus	8.3e-45	98.9
WP_071574367.1\|3681120_3681618_-	DUF4124 domain-containing protein	A0A2K8IBL8	Pseudomonas_phage	2.4e-90	100.0
WP_015975464.1\|3681693_3682287_-	DUF1737 domain-containing protein	A0A0U1VYP2	Pseudomonas_phage	2.4e-76	100.0
WP_015975463.1\|3682297_3682816_-	hypothetical protein	A0A0U1UNS0	Pseudomonas_phage	1.2e-71	100.0
WP_015975424.1\|3682812_3683346_-	glycoside hydrolase family protein	A0A0U1UNS2	Pseudomonas_phage	1.1e-101	100.0
WP_162288680.1\|3683329_3683587_-\|holin	holin	A0A0U1UNM6	Pseudomonas_phage	1.8e-36	98.8

DBSCAN-SWA_8

3697741 : 3749407

Pseudomonas_phage(67.86%)

terminase,tRNA,integrase

attL 3680043:3680059|attR 3744192:3744208

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3680043:3680059	attL	NA	NA	NA	NA
WP_023464858.1\|3697741_3699634_-	hypothetical protein	A0A0U1SZM6	Pseudomonas_phage	4.2e-183	99.7
WP_174249850.1\|3699634_3700798_-	hypothetical protein	A0A0U1VZM6	Pseudomonas_phage	2.0e-98	98.5
WP_162288682.1\|3700790_3703388_-	hypothetical protein	A0A0U1W0G7	Pseudomonas_phage	0.0e+00	99.7
WP_058164261.1\|3703392_3703983_-	hypothetical protein	A0A0U1VYN6	Pseudomonas_phage	3.7e-101	99.5
WP_004349219.1\|3704050_3705241_-	hypothetical protein	A0A0U1UNT0	Pseudomonas_phage	7.4e-226	100.0
WP_058143574.1\|3705240_3708204_-	hypothetical protein	A0A0U1W084	Pseudomonas_phage	0.0e+00	99.9
WP_004349215.1\|3708206_3709064_-	hypothetical protein	Q5QF52	Pseudomonas_virus	1.2e-156	100.0
WP_015975453.1\|3709063_3709489_-	hypothetical protein	Q5QF44	Pseudomonas_virus	5.9e-85	100.0
WP_004349209.1\|3709512_3709920_-	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	8.7e-70	100.0
WP_004349207.1\|3709900_3710107_-	hypothetical protein	A0A0U1SXT5	Pseudomonas_phage	1.3e-29	100.0
WP_015975451.1\|3710103_3710781_-	hypothetical protein	Q5QF47	Pseudomonas_virus	1.1e-130	100.0
WP_015975450.1\|3710777_3711650_-	hypothetical protein	Q5QF40	Pseudomonas_virus	4.8e-166	100.0
WP_015975422.1\|3711714_3712194_-	hypothetical protein	A0A0U1W0G3	Pseudomonas_phage	2.9e-80	100.0
WP_010793303.1\|3712252_3713545_-	DUF4043 family protein	L7TIC0	Pseudomonas_virus	5.0e-252	100.0
WP_044262436.1\|3713557_3714688_-	hypothetical protein	Q5QF43	Pseudomonas_virus	1.9e-178	97.9
WP_094893575.1\|3714834_3717150_-	hypothetical protein	Q5QF74	Pseudomonas_virus	0.0e+00	98.4
WP_109421553.1\|3717160_3718786_-\|terminase	terminase	Q5QF75	Pseudomonas_virus	0.0e+00	100.0
WP_102969874.1\|3718795_3719686_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	9.9e-151	99.6
WP_023980885.1\|3719838_3720063_+	hypothetical protein	A0A0U1UNS7	Pseudomonas_phage	2.7e-33	98.6
WP_004349189.1\|3720065_3720560_-	hypothetical protein	A0A0U1VYN2	Pseudomonas_phage	3.2e-82	99.4
WP_004354944.1\|3720638_3721253_-	recombination protein NinG	A0A0U1VZM0	Pseudomonas_phage	4.3e-113	100.0
WP_023082372.1\|3721308_3721860_-	hypothetical protein	A0A2K8I9A9	Pseudomonas_phage	1.7e-100	99.5
WP_044059411.1\|3721852_3722710_-	hypothetical protein	A0A0U1UNR3	Pseudomonas_phage	7.1e-146	98.6
WP_162288683.1\|3722696_3723701_-	phage replication protein	A0A0U1UNR4	Pseudomonas_phage	2.2e-146	97.6
WP_004349179.1\|3723702_3723903_-	Cro/Cl family transcriptional regulator	A0A2K8HL98	Pseudomonas_phage	1.8e-28	100.0
WP_015975417.1\|3724010_3724808_+	helix-turn-helix transcriptional regulator	A0A2K8HKD5	Pseudomonas_phage	1.9e-148	100.0
WP_004349174.1\|3724844_3725111_-	DUF1654 domain-containing protein	A0A2K8HZW3	Pseudomonas_phage	2.3e-42	100.0
WP_004349171.1\|3725522_3725696_+	hypothetical protein	A0A0U1W076	Pseudomonas_phage	1.1e-24	100.0
WP_044059410.1\|3725739_3725955_+	hypothetical protein	NA	NA	NA	NA
WP_034055146.1\|3726017_3726230_+	hypothetical protein	A0A0U1VYM8	Pseudomonas_phage	8.3e-32	95.7
WP_004354960.1\|3726264_3726636_+	carbon storage regulator CsrA	A0A0U1UNS3	Pseudomonas_phage	2.7e-62	100.0
WP_004354963.1\|3726763_3727267_+	hypothetical protein	J7I0S8	Pseudomonas_phage	8.5e-99	97.6
WP_020750786.1\|3727263_3727413_+	hypothetical protein	A0A0U1T4N1	Pseudomonas_phage	2.5e-14	100.0
WP_004354968.1\|3727396_3727618_+	hypothetical protein	A0A0U1SZL8	Pseudomonas_phage	2.2e-35	100.0
WP_162288684.1\|3727614_3727986_+	hypothetical protein	A0A2K8HNX4	Pseudomonas_phage	3.7e-59	98.4
WP_016263618.1\|3728098_3728251_+	hypothetical protein	A0A0U1W0F8	Pseudomonas_phage	8.9e-20	100.0
WP_021264621.1\|3728268_3729003_+	hypothetical protein	A0A0U1UNQ9	Pseudomonas_phage	4.5e-141	100.0
WP_021264620.1\|3729007_3730024_+	DUF1351 domain-containing protein	A0A0U1UNR0	Pseudomonas_phage	5.5e-121	98.8
WP_033957418.1\|3730153_3730759_+	3'-5' exonuclease	A0A0U1W072	Pseudomonas_phage	6.2e-112	99.5
WP_162288685.1\|3730762_3731266_+	single-stranded DNA-binding protein	A0A0U1VYM4	Pseudomonas_phage	4.2e-90	99.4
WP_162288686.1\|3731292_3732219_+	recombination-associated protein RdgC	A0A0U1SXS1	Pseudomonas_phage	8.4e-169	99.7
WP_010793328.1\|3732245_3733301_+	nucleoid-associated protein YejK	A0A2K8HR80	Pseudomonas_phage	1.9e-201	100.0
WP_010793329.1\|3733297_3733507_+	hypothetical protein	A0A0U1UNR9	Pseudomonas_phage	8.2e-32	100.0
WP_162962009.1\|3733925_3735098_+	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	9.6e-170	71.0
WP_162288688.1\|3735111_3737175_+	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	0.0e+00	99.6
WP_094069735.1\|3737171_3737978_+	class I SAM-dependent methyltransferase	A0A2K8I312	Pseudomonas_phage	1.3e-154	98.9
WP_162288689.1\|3737974_3738418_+	hypothetical protein	J7I440	Pseudomonas_phage	3.1e-76	96.6
WP_162288729.1\|3738567_3739062_+	DUF550 domain-containing protein	A0A2K8HR09	Pseudomonas_phage	5.4e-90	95.1
WP_162288690.1\|3739058_3739382_+	DUF4406 domain-containing protein	A0A2K8I958	Pseudomonas_phage	4.8e-55	98.1
WP_058202048.1\|3739378_3740137_+	hypothetical protein	Q5QF32	Pseudomonas_virus	1.2e-144	96.4
WP_033961728.1\|3742136_3742607_+	hypothetical protein	Q5QF39	Pseudomonas_virus	1.1e-79	98.1
WP_172626328.1\|3742630_3742792_+	AlpA family phage regulatory protein	H2BDA4	Pseudomonas_phage	2.6e-25	96.2
WP_015975425.1\|3742792_3744028_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q5QF66	Pseudomonas_virus	1.8e-235	100.0
WP_003087898.1\|3744812_3745667_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.0e-27	34.7
3744192:3744208	attR	NA	NA	NA	NA
WP_003113587.1\|3745724_3747107_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	6.9e-42	31.6
WP_003098032.1\|3747116_3748787_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	4.8e-199	60.3
WP_003087890.1\|3748909_3749407_+	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.4e-13	32.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR739071

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection