CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_LR745045	Klebsiella pneumoniae isolate Kpn2166 chromosome Kpn2166	0 crisprs	RT,csa3,cas3,DEDDh,DinG,WYL	7
NZ_LR745046	Klebsiella pneumoniae isolate Kpn2166 plasmid pVIR_Kpn2166	0 crisprs	NA	2
NZ_LR745047	Klebsiella pneumoniae isolate Kpn2166 plasmid pCTX-M15_Kpn2166	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1324638 : 1339360

Morganella_phage(50.0%)

tail,integrase

attL 1324391:1324411|attR 1344455:1344475

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1324391:1324411	attL	NA	NA	NA	NA
WP_004213157.1\|1324638_1325892_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.2e-147	60.4
WP_004213158.1\|1325987_1326995_+	hypothetical protein	NA	NA	NA	NA
WP_004213159.1\|1327125_1327344_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004213160.1\|1327343_1327778_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.4e-25	55.3
WP_004213161.1\|1327791_1328394_+	hypothetical protein	A0A1W6JPH8	Morganella_phage	1.2e-54	57.8
WP_004213162.1\|1328393_1328573_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_023302683.1\|1328569_1329535_+	ash family protein	A0A291AWU3	Escherichia_phage	3.9e-07	44.3
WP_004213165.1\|1329531_1330035_+	hypothetical protein	NA	NA	NA	NA
WP_004213166.1\|1330031_1330241_+	hypothetical protein	NA	NA	NA	NA
WP_004213167.1\|1330237_1330864_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.6e-25	37.8
WP_004213168.1\|1330873_1331224_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	3.4e-38	70.0
WP_004213169.1\|1331216_1333979_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.8e-292	56.1
WP_032424539.1\|1334318_1334765_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_004213171.1\|1334745_1335129_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_004213172.1\|1335133_1335607_+	hypothetical protein	NA	NA	NA	NA
WP_004213173.1\|1335790_1335961_+	hypothetical protein	NA	NA	NA	NA
WP_004213174.1\|1335960_1336287_+	hypothetical protein	NA	NA	NA	NA
WP_004213175.1\|1336294_1339360_+\|tail	phage tail length tape measure family protein	B1GS57	Salmonella_phage	2.0e-94	40.5
1344455:1344475	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1347473 : 1382633

Salmonella_phage(35.9%)

tail,terminase,integrase

attL 1345722:1345736|attR 1355623:1355637

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1345722:1345736	attL	NA	NA	NA	NA
WP_004151980.1\|1347473_1348940_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1349007_1350585_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_032457443.1\|1350776_1352027_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	2.6e-205	84.9
WP_032457442.1\|1352043_1352235_-	hypothetical protein	NA	NA	NA	NA
WP_032457440.1\|1352231_1352825_-	adenine methylase	T1SA14	Salmonella_phage	2.1e-109	91.9
WP_032457439.1\|1352814_1353000_-	DUF1317 family protein	A0A193GYJ8	Enterobacter_phage	2.6e-21	89.3
WP_023339275.1\|1352992_1353286_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
WP_004144294.1\|1353395_1353644_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_032457438.1\|1353692_1354628_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	4.4e-141	76.4
WP_032457437.1\|1354624_1355446_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A193GYK2	Enterobacter_phage	1.4e-130	80.6
WP_032441408.1\|1355442_1355742_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	8.8e-19	52.5
1355623:1355637	attR	NA	NA	NA	NA
WP_004164037.1\|1355738_1355888_-	hypothetical protein	G9L6A5	Escherichia_phage	7.9e-13	84.2
WP_004144290.1\|1356108_1356690_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_004152538.1\|1356844_1357078_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1357224_1357434_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_032457436.1\|1357433_1358201_+	primosomal protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_032457435.1\|1358197_1358983_+	replication protein	A0A193GYX1	Enterobacter_phage	1.1e-132	87.4
WP_023339267.1\|1359102_1359447_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.5e-51	84.2
WP_162484370.1\|1359639_1360056_+	hypothetical protein	A0A2H4N7F5	Pectobacterium_phage	5.0e-20	80.7
WP_032457433.1\|1360048_1360444_+	ead/Ea22-like family protein	Q716F4	Shigella_phage	6.4e-09	39.4
WP_023339691.1\|1360443_1360632_+	hypothetical protein	A0A192Y8X2	Salmonella_phage	3.7e-23	88.7
WP_077253820.1\|1360759_1361317_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_130952493.1\|1361313_1361514_+	hypothetical protein	NA	NA	NA	NA
WP_032457431.1\|1361506_1361845_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	2.7e-48	86.4
WP_023301597.1\|1361921_1362251_+	hypothetical protein	K7PGV5	Enterobacterial_phage	8.7e-28	55.1
WP_032457429.1\|1362308_1362893_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	5.8e-91	89.1
WP_032457428.1\|1362889_1364365_+	hypothetical protein	Q858H3	Salmonella_phage	1.2e-278	92.3
WP_032457427.1\|1364376_1364649_-	hypothetical protein	NA	NA	NA	NA
WP_032457426.1\|1364727_1365159_-	hypothetical protein	A0A248SKX0	Klebsiella_phage	3.7e-34	53.5
WP_004141368.1\|1365895_1366102_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_032457425.1\|1366116_1367799_+\|tail	tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.6
WP_004141364.1\|1367795_1368095_+	hypothetical protein	T1SBI9	Salmonella_phage	3.1e-32	68.4
WP_032457424.1\|1368091_1368415_+	hypothetical protein	NA	NA	NA	NA
WP_032457423.1\|1368426_1369131_+	peptidase	G9L6C4	Escherichia_phage	1.0e-65	74.4
WP_032413483.1\|1369145_1370132_+	phage protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_020953461.1\|1370185_1370623_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_032457422.1\|1370633_1370975_+	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
WP_032457421.1\|1371025_1371349_+	hypothetical protein	G9L6C8	Escherichia_phage	3.5e-45	84.1
WP_004141350.1\|1371348_1371954_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	1.4e-87	77.5
WP_032457420.1\|1371953_1374431_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.7
WP_032457419.1\|1374430_1374895_+	hypothetical protein	Q858G2	Salmonella_phage	1.0e-69	81.2
WP_004152437.1\|1374894_1375434_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	6.1e-71	80.0
WP_032457418.1\|1375444_1377979_+	bacteriophage protein	Q858G0	Salmonella_phage	0.0e+00	81.4
WP_032457417.1\|1377978_1379877_+	hypothetical protein	Q858F9	Salmonella_phage	0.0e+00	89.0
WP_032457416.1\|1379876_1382633_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	93.1

DBSCAN-SWA_3

1386358 : 1393243

Salmonella_phage(57.14%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032457410.1\|1386358_1386652_-	hypothetical protein	T1SA06	Salmonella_phage	8.0e-25	65.5
WP_004197353.1\|1389059_1389239_+	hypothetical protein	A0A1I9SEW0	Klebsiella_phage	5.6e-05	39.0
WP_004146394.1\|1389375_1389780_+	membrane protein	T1SA79	Salmonella_phage	9.3e-56	84.1
WP_032457409.1\|1389766_1390072_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	1.7e-38	80.4
WP_032418560.1\|1390061_1390691_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.5e-92	78.4
WP_032457408.1\|1390687_1391188_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	5.3e-69	89.4
WP_004152009.1\|1391374_1393243_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1721944 : 1728849

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|1721944_1722808_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004214747.1\|1722818_1723592_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
WP_004151134.1\|1723832_1724729_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1724971_1726333_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004201558.1\|1726651_1727374_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004214740.1\|1727370_1728849_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.4e-29	28.3

DBSCAN-SWA_5

2757070 : 2767957

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209809.1\|2757070_2760178_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
WP_004176258.1\|2760232_2761498_+	MFS transporter	NA	NA	NA	NA
WP_004209813.1\|2761528_2762617_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.0e-210	99.7
WP_004176262.1\|2762703_2762964_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|2763261_2764122_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_004209817.1\|2764142_2764904_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.5e-134	99.6
WP_002903955.1\|2765164_2766067_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004183946.1\|2766078_2767344_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002210516.1\|2767336_2767957_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_6

2803164 : 2898483

101

Escherichia_phage(18.6%)

holin,tail,integrase,head,transposase,capsid,protease,portal,terminase

attL 2821342:2821360|attR 2871793:2871811

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209779.1\|2803164_2803977_+\|protease	serine protease	NA	NA	NA	NA
WP_002903685.1\|2803990_2804107_+	hypothetical protein	NA	NA	NA	NA
WP_002903683.1\|2804150_2804480_-	multidrug efflux SMR transporter subunit KpnF	NA	NA	NA	NA
WP_002903681.1\|2804466_2804829_-	multidrug efflux SMR transporter subunit KpnE	NA	NA	NA	NA
WP_002903679.1\|2805271_2806306_+	AI-2E family transporter	NA	NA	NA	NA
WP_002903677.1\|2806530_2808186_+	malonate decarboxylase subunit alpha	NA	NA	NA	NA
WP_004143107.1\|2808185_2809028_+	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA
WP_002903639.1\|2809045_2809345_+	malonate decarboxylase acyl carrier protein	NA	NA	NA	NA
WP_004143105.1\|2809337_2810171_+	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA
WP_004209782.1\|2810170_2810971_+	biotin-independent malonate decarboxylase subunit gamma	NA	NA	NA	NA
WP_004209783.1\|2811107_2812067_+	AEC family transporter	A0A0U2C0Y4	Salmonella_phage	2.7e-53	90.3
WP_004209784.1\|2812070_2812688_+	malonate decarboxylase holo-ACP synthase	NA	NA	NA	NA
WP_162484386.1\|2812687_2813590_+	malonate decarboxylase subunit epsilon	NA	NA	NA	NA
WP_004148289.1\|2813579_2814506_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_022615525.1\|2814663_2816319_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_032457363.1\|2816583_2817504_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_004179716.1\|2817667_2818024_-	hypothetical protein	NA	NA	NA	NA
WP_004183910.1\|2818179_2819796_+	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
WP_004176303.1\|2819792_2820512_+	two-component system response regulator DcuR	NA	NA	NA	NA
WP_004209794.1\|2820492_2821443_-	FAD:protein FMN transferase	NA	NA	NA	NA
2821342:2821360	attL	NA	NA	NA	NA
WP_004209796.1\|2821510_2824288_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	6.8e-65	31.0
WP_002903581.1\|2825005_2826442_+	anion permease	NA	NA	NA	NA
WP_004152246.1\|2826496_2828149_+	class I fumarate hydratase	NA	NA	NA	NA
WP_023302609.1\|2828311_2829928_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_004143067.1\|2830972_2831362_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_004215412.1\|2831354_2832119_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_020316475.1\|2832108_2833461_-	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA
WP_004214878.1\|2833470_2834673_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_004176317.1\|2834683_2835340_-	CoA transferase subunit B	NA	NA	NA	NA
WP_002903522.1\|2835350_2836037_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_004151560.1\|2836206_2837013_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004143055.1\|2837009_2837573_-	DNA endonuclease SmrA	NA	NA	NA	NA
WP_004148273.1\|2837674_2838583_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004214881.1\|2838749_2840060_+	M20 family metallo-hydrolase	NA	NA	NA	NA
WP_022615524.1\|2840059_2841505_+	amidohydrolase	NA	NA	NA	NA
WP_022615523.1\|2841624_2842743_+	AbgT family transporter	NA	NA	NA	NA
WP_004214887.1\|2842871_2843972_+\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	8.3e-115	56.8
WP_004214894.1\|2845172_2845472_-	hypothetical protein	NA	NA	NA	NA
WP_022615522.1\|2845639_2846284_+	hypothetical protein	NA	NA	NA	NA
WP_022615521.1\|2846339_2847074_-	hypothetical protein	NA	NA	NA	NA
WP_138983668.1\|2847101_2849240_-	hypothetical protein	B5TAB2	Burkholderia_phage	4.7e-90	42.2
WP_016530179.1\|2849312_2852390_-	hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	61.5
WP_022615519.1\|2852386_2852767_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.6e-57	80.2
WP_004864228.1\|2852779_2853256_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	4.8e-51	65.8
WP_004177132.1\|2853242_2853716_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-55	62.1
WP_016530181.1\|2853736_2857126_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	60.6
WP_016530182.1\|2857186_2857420_-	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_016530183.1\|2857493_2857799_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_016530184.1\|2857801_2858206_-\|tail	phage tail assembly chaperone	K7PKV6	Enterobacterial_phage	3.2e-32	57.4
WP_016530185.1\|2858236_2858941_-	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	6.6e-81	67.4
WP_016530186.1\|2858997_2859345_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
WP_016530187.1\|2859341_2859791_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	7.4e-62	81.9
WP_016530188.1\|2859787_2860126_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	7.8e-40	70.5
WP_016530189.1\|2860134_2860452_-\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	1.8e-22	51.0
WP_004104235.1\|2860529_2861768_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	6.8e-158	69.2
WP_000999827.1\|2861777_2862377_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
WP_016530190.1\|2862369_2863596_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.2e-208	85.3
WP_016530191.1\|2863585_2863747_-	hypothetical protein	NA	NA	NA	NA
WP_025108055.1\|2863743_2865495_-\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	4.0e-252	72.5
WP_016530193.1\|2865498_2865996_-\|terminase	phage terminase small subunit P27 family	A0A1W6JP17	Morganella_phage	5.7e-63	73.9
WP_016530194.1\|2866153_2866504_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	7.8e-51	79.8
WP_016530196.1\|2867137_2867764_-	hypothetical protein	NA	NA	NA	NA
WP_022615516.1\|2867768_2868704_-	DUF4747 family protein	NA	NA	NA	NA
WP_016530199.1\|2868927_2869203_-	hypothetical protein	G8C7W1	Escherichia_phage	1.7e-05	36.0
WP_016530200.1\|2869210_2869840_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.4e-103	88.0
WP_016530201.1\|2869839_2870121_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.6e-30	71.0
WP_004213330.1\|2870107_2870503_-\|holin	phage holin family protein	G8C7V8	Escherichia_phage	1.5e-45	73.1
WP_032427780.1\|2870595_2871168_-	hypothetical protein	NA	NA	NA	NA
WP_004213332.1\|2871279_2871858_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.5e-48	56.1
2871793:2871811	attR	NA	NA	NA	NA
WP_032427779.1\|2871871_2872852_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.6e-133	66.3
WP_004184734.1\|2872864_2873242_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
WP_016530204.1\|2873251_2874061_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	4.5e-110	68.9
WP_016530205.1\|2874057_2874996_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.6e-101	74.5
WP_004184738.1\|2874985_2875165_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.6e-15	75.0
WP_004213338.1\|2875402_2875864_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_016530206.1\|2875889_2876087_-	Cro/Cl family transcriptional regulator	H9C161	Pectobacterium_phage	2.7e-16	66.1
WP_016530207.1\|2876179_2876839_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	7.3e-74	62.7
WP_004213349.1\|2877606_2877906_+	hypothetical protein	K7PJS4	Enterobacterial_phage	9.4e-13	46.7
WP_004213351.1\|2877905_2878691_+	hypothetical protein	C7BGF1	Burkholderia_phage	5.3e-63	52.9
WP_004213355.1\|2878818_2879163_+	hypothetical protein	NA	NA	NA	NA
WP_016530208.1\|2879155_2879818_+	hypothetical protein	Q71T76	Escherichia_phage	2.2e-54	56.0
WP_004213359.1\|2879814_2880000_+	hypothetical protein	NA	NA	NA	NA
WP_016530209.1\|2880119_2880380_+	pyocin activator PrtN family protein	A0A1L5C290	Pseudoalteromonas_phage	1.5e-11	43.7
WP_002903398.1\|2880991_2881150_-	hypothetical protein	NA	NA	NA	NA
WP_004213367.1\|2881442_2881958_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.0e-23	54.9
WP_002903394.1\|2882152_2882905_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_002903391.1\|2883043_2883994_+	universal stress protein UspE	NA	NA	NA	NA
WP_002903388.1\|2884103_2884292_-	hypothetical protein	NA	NA	NA	NA
WP_002903386.1\|2884440_2885829_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_004148265.1\|2885839_2887369_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_004140012.1\|2887711_2887894_+	hypothetical protein	NA	NA	NA	NA
WP_002903384.1\|2887890_2888841_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004183892.1\|2889018_2890401_+	amino acid permease	NA	NA	NA	NA
WP_004140019.1\|2890437_2891160_+	dihydromonapterin reductase	NA	NA	NA	NA
WP_002903379.1\|2891156_2891492_-	GlpM family protein	NA	NA	NA	NA
WP_002903377.1\|2891620_2892340_+	two-component system response regulator RstA	NA	NA	NA	NA
WP_002903374.1\|2892582_2892945_+	hypothetical protein	NA	NA	NA	NA
WP_004140030.1\|2893201_2894503_+	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	1.3e-18	24.3
WP_004148259.1\|2894578_2895511_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_004176339.1\|2895500_2896901_-	class II fumarate hydratase	NA	NA	NA	NA
WP_104716484.1\|2897119_2898483_-\|transposase	IS3-like element ISKpn1 family transposase	A0A1B1P773	Bacillus_phage	1.5e-73	51.1

DBSCAN-SWA_7

3181264 : 3227491

Enterobacteria_phage(56.25%)

plate,tail,tRNA,head,integrase,capsid,portal,terminase

attL 3186492:3186509|attR 3223758:3223775

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213129.1\|3181264_3181765_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3181881_3182328_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|3182311_3183106_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324105.1\|3183213_3184389_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3184420_3185113_-	CTP synthase	NA	NA	NA	NA
WP_004176547.1\|3185258_3185768_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|3185772_3186111_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|3186100_3186340_-	DUF333 domain-containing protein	NA	NA	NA	NA
3186492:3186509	attL	NA	NA	NA	NA
WP_004213128.1\|3186604_3186856_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_032457354.1\|3186899_3188039_-	phage late control D family protein	B9A7A9	Serratia_phage	1.2e-145	71.0
WP_032457353.1\|3188193_3189366_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.0e-158	70.7
WP_032414481.1\|3189365_3189881_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.7e-57	61.2
WP_004131585.1\|3189926_3190244_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_053086776.1\|3190264_3190402_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	5.8e-10	65.9
WP_050594806.1\|3190388_3193364_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.9e-222	46.9
WP_032457467.1\|3193378_3193870_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	5.6e-55	62.7
WP_032457352.1\|3194185_3195673_+	hypothetical protein	NA	NA	NA	NA
WP_032457351.1\|3195922_3197020_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.3e-11	29.0
WP_009486478.1\|3197019_3197232_-	hypothetical protein	NA	NA	NA	NA
WP_032457350.1\|3197228_3200255_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_032457349.1\|3200244_3201168_-\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	9.9e-53	43.6
WP_032411305.1\|3201169_3201520_-	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	2.1e-27	54.8
WP_032457348.1\|3201516_3202104_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.2e-61	61.0
WP_032457347.1\|3202100_3202736_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	6.6e-56	50.5
WP_023328065.1\|3202732_3203200_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	5.4e-47	59.5
WP_157835119.1\|3203200_3203536_-	peptidase	B6SD31	Bacteriophage	9.6e-06	33.3
WP_023339943.1\|3203722_3204268_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_004213110.1\|3204264_3204549_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|3204539_3204740_-\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_004213109.1\|3204739_3205255_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
WP_032457346.1\|3205367_3206225_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.1e-69	58.1
WP_004213107.1\|3206274_3207309_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	6.2e-96	50.0
WP_004213106.1\|3207318_3208158_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	5.6e-95	66.3
WP_004213105.1\|3208314_3210042_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	3.1e-233	68.3
WP_004213104.1\|3210035_3211097_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.1e-143	68.4
WP_032457345.1\|3211547_3212066_-	PIN domain-containing protein	NA	NA	NA	NA
WP_032457344.1\|3212055_3213201_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_032457343.1\|3214107_3216222_-	DUF91 domain-containing protein	NA	NA	NA	NA
WP_023328077.1\|3218898_3219834_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	3.2e-83	53.8
WP_032457342.1\|3220066_3220633_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.8e-13	31.5
WP_032457341.1\|3220629_3220854_-	hypothetical protein	NA	NA	NA	NA
WP_004131520.1\|3220922_3221195_-	hypothetical protein	NA	NA	NA	NA
WP_032457340.1\|3221210_3221588_-	hypothetical protein	NA	NA	NA	NA
WP_004131515.1\|3221603_3221822_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	4.7e-06	49.1
WP_017898643.1\|3221842_3222121_-	hypothetical protein	Q1JS60	Enterobacteria_phage	2.0e-41	87.6
WP_048024533.1\|3222242_3222542_+	helix-turn-helix transcriptional regulator	Q1JS83	Enterobacteria_phage	3.0e-43	85.9
WP_017898644.1\|3222657_3223641_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	8.4e-151	79.8
WP_004176549.1\|3223906_3224920_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
3223758:3223775	attR	NA	NA	NA	NA
WP_004150782.1\|3224977_3225079_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3225078_3225153_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3225270_3225396_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3225454_3225718_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3225848_3226487_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3226576_3227491_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LR745046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

123660 : 183739

Caulobacter_phage(16.67%)

integrase,protease,transposase

attL 122097:122124|attR 156604:156631

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
122097:122124	attL	NA	NA	NA	NA
WP_004213560.1\|123660_124440_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	89.4
WP_004213558.1\|124584_125514_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.6e-72	52.4
WP_077250517.1\|125826_125985_+	hypothetical protein	A0A0U2RK18	Escherichia_phage	2.2e-05	69.7
WP_011154535.1\|126099_127068_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-171	91.0
WP_004213252.1\|127767_128595_+	ABC transporter ATP-binding protein	M1HV27	Acanthocystis_turfacea_Chlorella_virus	2.2e-11	28.4
WP_004213250.1\|128616_129573_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004902166.1\|129572_130577_+	iron ABC transporter permease	NA	NA	NA	NA
WP_004902162.1\|132425_133625_-	GTP-binding protein	NA	NA	NA	NA
WP_004902159.1\|133722_134109_+	hypothetical protein	NA	NA	NA	NA
WP_004213915.1\|134333_134651_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_004145290.1\|135200_135710_-	peptide deformylase	E3SLL2	Synechococcus_phage	8.8e-19	41.9
WP_004213918.1\|136570_136765_-	hypothetical protein	NA	NA	NA	NA
WP_023302795.1\|137462_138662_-	MFS transporter	NA	NA	NA	NA
WP_004213920.1\|138818_140543_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_004213921.1\|140543_141491_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_004213922.1\|141490_143224_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_004213923.1\|143227_144505_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_004213924.1\|144586_146788_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_004213925.1\|147454_147715_+	DUF1471 domain-containing protein	A0A1B2IE60	Erwinia_phage	1.1e-06	51.0
WP_004213927.1\|147756_148317_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004902152.1\|148354_148783_+	DUF417 family protein	NA	NA	NA	NA
WP_004213932.1\|148866_149142_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011251327.1\|149204_149696_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_004213934.1\|149744_150665_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004213072.1\|153461_153905_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004213073.1\|153901_154132_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_004213075.1\|154739_155873_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_004213076.1\|155888_156182_+	hypothetical protein	NA	NA	NA	NA
WP_004213077.1\|156171_156378_-	hypothetical protein	NA	NA	NA	NA
WP_004213078.1\|156729_157020_+	hypothetical protein	NA	NA	NA	NA
156604:156631	attR	NA	NA	NA	NA
WP_004225022.1\|157009_157909_+	nucleotide-binding protein	NA	NA	NA	NA
WP_004215174.1\|157957_160183_-	exclusion suppressor FxsA	NA	NA	NA	NA
WP_004215173.1\|160184_161087_-	hypothetical protein	NA	NA	NA	NA
WP_004225020.1\|161170_161353_+	hypothetical protein	NA	NA	NA	NA
WP_004215188.1\|161371_161833_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_004215186.1\|161948_162896_+	DMT family transporter	NA	NA	NA	NA
WP_004225018.1\|163231_164227_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.1e-20	28.7
WP_004210218.1\|164432_165446_-	NAD(P)-dependent alcohol dehydrogenase	M1PHA2	Moumouvirus	5.8e-06	26.0
WP_077250518.1\|166099_169057_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	2.3e-50	22.8
WP_004144375.1\|169898_170759_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.0e-08	21.7
WP_004210231.1\|172490_173138_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_004210233.1\|173474_174716_-	VWA domain-containing protein	A0A2D1GNA9	Pseudoalteromonas_phage	4.8e-10	25.1
WP_004026611.1\|174800_175376_-	tellurium resistance cAMP binding protein TerE	K4JRX3	Caulobacter_phage	9.6e-30	42.6
WP_004026609.1\|175476_176055_-	tellurium resistance membrane protein TerD	K4JRX3	Caulobacter_phage	1.9e-33	40.8
WP_004026607.1\|176093_177134_-	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	1.8e-71	46.5
WP_004026604.1\|177157_177613_-	tellurium resistance membrane protein TerB	NA	NA	NA	NA
WP_011154617.1\|177635_178787_-	tellurium resistance system protein TerA	NA	NA	NA	NA
WP_004210240.1\|178783_179368_-	TerD family protein	K4JRX3	Caulobacter_phage	1.8e-12	29.9
WP_023302789.1\|179679_180738_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004210246.1\|180749_181892_+	phosphoribosyltransferase domain-containing protein	A0A172Q0Y1	Acinetobacter_phage	6.3e-33	28.2
WP_004181732.1\|181884_182658_+	hypothetical protein	NA	NA	NA	NA
WP_004210251.1\|182659_183739_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.1e-39	33.8

DBSCAN-SWA_2

218529 : 225942

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213807.1\|218529_219498_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
WP_004902302.1\|219766_221359_-\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_004189161.1\|221389_221740_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004215130.1\|221736_222177_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
WP_004117790.1\|223804_224776_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
WP_004211841.1\|224775_225942_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	2.0e-223	97.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR745045

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LR745046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection