CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_LR792631	Klebsiella pneumoniae isolate SB5881 plasmid SB5881_III	0 crisprs	NA	0	0
NZ_LR792630	Klebsiella pneumoniae isolate SB5881 plasmid SB5881_I	0 crisprs	NA	0	0
NZ_LR792628	Klebsiella pneumoniae isolate SB5881 chromosome SB5881_omosome	3 crisprs	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,DEDDh,DinG,WYL	12	7
NZ_LR792629	Klebsiella pneumoniae isolate SB5881 plasmid SB5881_II	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11438 : 103733

Shigella_phage(13.33%)

integrase,transposase

attL 11410:11428|attR 35902:35920

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
11410:11428	attL	NA	NA	NA	NA
WP_016530750.1\|11438_12179_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	9.1e-25	58.6
WP_016530749.1\|12939_13476_-	hypothetical protein	NA	NA	NA	NA
WP_046042002.1\|14735_15752_+\|transposase	IS110-like element ISKpn2 family transposase	NA	NA	NA	NA
WP_016529496.1\|21410_23585_-	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	2.8e-05	30.6
WP_016529497.1\|24044_25274_-	esterase family protein	NA	NA	NA	NA
WP_046042014.1\|25379_29024_-	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	2.5e-46	29.7
WP_016529499.1\|29166_30282_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_074160420.1\|30297_30525_-\|transposase	transposase	NA	NA	NA	NA
WP_016529500.1\|30631_31276_-	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	2.1e-54	53.2
WP_016529501.1\|31260_32493_-	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	6.3e-63	34.0
WP_004181898.1\|33326_33485_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_004117900.1\|34125_34293_-	hypothetical protein	NA	NA	NA	NA
WP_016529123.1\|36345_36999_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
35902:35920	attR	NA	NA	NA	NA
WP_171819463.1\|38232_39237_-	iron ABC transporter permease	NA	NA	NA	NA
WP_032446641.1\|39236_40193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046042034.1\|40214_41042_-	ABC transporter ATP-binding protein	M1HV27	Acanthocystis_turfacea_Chlorella_virus	1.3e-11	28.4
WP_077251134.1\|41806_41911_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_016530671.1\|44391_44670_-\|transposase	transposase	Q71TE9	Escherichia_phage	4.3e-28	68.2
WP_016530670.1\|45295_46288_-	DsbA family protein	NA	NA	NA	NA
WP_042941664.1\|51498_52020_+	CSS-motif domain-containing protein	NA	NA	NA	NA
WP_171819462.1\|52202_53051_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004144375.1\|53549_54410_-	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.0e-08	21.7
WP_016529083.1\|54516_55134_-	recombinase family protein	A0A219Y912	Aeromonas_phage	2.7e-22	35.3
WP_004026629.1\|59285_59684_+	H-NS histone family protein	NA	NA	NA	NA
WP_004181928.1\|60445_60757_-	hypothetical protein	NA	NA	NA	NA
WP_016529087.1\|60773_61502_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_016529091.1\|65115_66153_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_046042027.1\|67223_67601_-	hypothetical protein	NA	NA	NA	NA
WP_016530173.1\|67793_68549_-	hypothetical protein	NA	NA	NA	NA
WP_004026319.1\|69144_69609_+	hypothetical protein	NA	NA	NA	NA
WP_016530174.1\|69608_70397_+	hypothetical protein	NA	NA	NA	NA
WP_042940293.1\|73556_73874_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_004145290.1\|74422_74932_-	peptide deformylase	E3SLL2	Synechococcus_phage	8.8e-19	41.9
WP_032105366.1\|75299_75944_-	hypothetical protein	NA	NA	NA	NA
WP_032105367.1\|75955_76387_-	hypothetical protein	NA	NA	NA	NA
WP_032105368.1\|76392_76749_-	hypothetical protein	NA	NA	NA	NA
WP_158414502.1\|76772_76931_-	hypothetical protein	NA	NA	NA	NA
WP_108523659.1\|77797_78997_-	MFS transporter	NA	NA	NA	NA
WP_032105369.1\|79153_80878_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_016528828.1\|80878_81826_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_016528829.1\|81825_83559_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_174893464.1\|83562_84897_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_032105370.1\|84922_87124_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_004145307.1\|87783_88044_+	DUF1471 domain-containing protein	A0A1B2IE60	Erwinia_phage	1.1e-06	51.0
WP_016529247.1\|88086_88647_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004902152.1\|88683_89112_+	DUF417 family protein	NA	NA	NA	NA
WP_016529248.1\|89199_89475_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_042940632.1\|89537_90029_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_016529250.1\|90077_90998_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004145313.1\|91641_92220_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.5e-26	39.1
WP_128972610.1\|95341_95623_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.1e-10	55.0
WP_004213635.1\|95845_96367_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_032105434.1\|97403_99530_+	TonB-dependent receptor family protein	NA	NA	NA	NA
WP_016528985.1\|99604_99760_+	hypothetical protein	NA	NA	NA	NA
WP_016528984.1\|99904_100126_+	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	8.5e-19	66.2
WP_016528982.1\|100824_101268_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_016528981.1\|101264_101735_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_016528980.1\|101845_102106_-	hypothetical protein	NA	NA	NA	NA
WP_115217266.1\|102505_103733_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.1e-168	95.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LR792628

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR792628_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR792628_2

1185346-1185923

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

9 spacers

cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_LR792628_2

>merge|NZ_LR792628|2|1185346-1185923|PILER-CR,CRT,CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGGTCACGAAGGAGGGGGCCGAGGGAGCAGTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCATATATTCGGCATTAATTGAGGTTCCACCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCCGGCACAATCGCCATCACGTAAAACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCGAGCAGCAATTGCGTGATCACCCGGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAGGTTAGACATTGGTTAGTTCCTCATTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCATAATCAGGAGCAAATCAGATGAGCTATAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTAACGGGACGCGGAACCGACAGGAAGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATCAACAGGTGCGGAACCGGTTCAAGAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGATATCACCGAACTGGCTCGGGCCATGAAGTGTTCCCCGCATTCGCGAGGATAAGCCC

>NZ_LR792628|2|2|1185346-1185862|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAAGGAGGGGGCCGAGGGAGCAGTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATATTCGGCATTAATTGAGGTTCCACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCCGGCACAATCGCCATCACGTAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGAGCAGCAATTGCGTGATCACCCGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAGGTTAGACATTGGTTAGTTCCTCATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATAATCAGGAGCAAATCAGATGAGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTAACGGGACGCGGAACCGACAGGAAGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATCAACAGGTGCGGAACCGGTTCAAGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_LR792628|2|2|1185346-1185923|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAAGGAGGGGGCCGAGGGAGCAGTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATATTCGGCATTAATTGAGGTTCCACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCCGGCACAATCGCCATCACGTAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGAGCAGCAATTGCGTGATCACCCGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAGGTTAGACATTGGTTAGTTCCTCATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATAATCAGGAGCAAATCAGATGAGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTAACGGGACGCGGAACCGACAGGAAGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATCAACAGGTGCGGAACCGGTTCAAGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGATATCACCGAACTGGCTCGGGCCATGAA
GTGTTCCCCGCATTCGCGAGGATAAGCCC

>NZ_LR792628|2|2|1185407-1185923|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATATTCGGCATTAATTGAGGTTCCACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCCGGCACAATCGCCATCACGTAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGAGCAGCAATTGCGTGATCACCCGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAGGTTAGACATTGGTTAGTTCCTCATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATAATCAGGAGCAAATCAGATGAGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTAACGGGACGCGGAACCGACAGGAAGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATCAACAGGTGCGGAACCGGTTCAAGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGATATCACCGAACTGGCTCGGGCCATGAA
GTGTTCCCCGCATTCGCGAGGATAAGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR792628.1\|WP_002915160.1\|1191952_1192861_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LR792628.1\|WP_016529005.1\|1182009_1182756_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LR792628.1\|WP_016529006.1\|1178829_1180386_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_LR792628.1\|WP_009308513.1\|1180943_1181999_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_LR792628.1\|WP_004174642.1\|1171603_1173403_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_LR792628.1\|WP_002915158.1\|1194297_1194903_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LR792628.1\|WP_004181094.1\|1192870_1194298_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LR792628.1\|WP_002915157.1\|1194953_1195280_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_LR792628.1\|WP_074185947.1\|1190536_1191943_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_LR792628.1\|WP_009308506.1\|1189234_1190290_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LR792628.1\|WP_016529008.1\|1173402_1175115_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LR792628.1\|WP_016529000.1\|1188011_1189199_-\|DUF3142-domain-containing-protein	unknown	unknown	gnl\|CDD\|371478
NZ_LR792628.1\|WP_002915156.1\|1195420_1195738_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LR792628.1\|WP_004174645.1\|1195757_1196468_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LR792628.1\|WP_002915177.1\|1175213_1175948_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_LR792628.1\|WP_016529007.1\|1176154_1178818_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_LR792628.1\|WP_009308509.1\|1184304_1184598_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LR792628.1\|WP_016529002.1\|1183384_1184305_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LR792628.1\|WP_042940406.1\|1186003_1188025_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349729
NZ_LR792628.1\|WP_004142782.1\|1180382_1180925_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
NZ_LR792628.1\|WP_002915160.1\|1191952_1192861_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LR792628.1\|WP_016529005.1\|1182009_1182756_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.1934e-46
NZ_LR792628.1\|WP_016529006.1\|1178829_1180386_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.39928e-164
NZ_LR792628.1\|WP_009308513.1\|1180943_1181999_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.74653e-134
NZ_LR792628.1\|WP_004174642.1\|1171603_1173403_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_LR792628.1\|WP_002915158.1\|1194297_1194903_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.18847e-150
NZ_LR792628.1\|WP_004181094.1\|1192870_1194298_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LR792628.1\|WP_002915157.1\|1194953_1195280_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.97707e-47
NZ_LR792628.1\|WP_074185947.1\|1190536_1191943_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_LR792628.1\|WP_009308506.1\|1189234_1190290_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LR792628.1\|WP_016529008.1\|1173402_1175115_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LR792628.1\|WP_016529000.1\|1188011_1189199_-\|DUF3142-domain-containing-protein	gnl\|CDD\|371478	pfam11340, DUF3142, Protein of unknown function (DUF3142). This bacterial family of proteins has no known function.	5.08031e-88
NZ_LR792628.1\|WP_002915156.1\|1195420_1195738_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.98223e-63
NZ_LR792628.1\|WP_004174645.1\|1195757_1196468_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.4215e-118
NZ_LR792628.1\|WP_002915177.1\|1175213_1175948_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.60207e-138
NZ_LR792628.1\|WP_016529007.1\|1176154_1178818_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.5983e-145
NZ_LR792628.1\|WP_009308509.1\|1184304_1184598_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.32738e-63
NZ_LR792628.1\|WP_016529002.1\|1183384_1184305_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.36012e-156
NZ_LR792628.1\|WP_042940406.1\|1186003_1188025_-\|hypothetical-protein	gnl\|CDD\|349729	cd18422, BTB_POZ_KCNG3, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily G member 3 (KCNG3). KCNG3, also called voltage-gated potassium channel subunit Kv6.3 or voltage-gated potassium channel subunit Kv10.1, is an electrically silent modulatory subunit that can form functional heterotetrameric channels with KCNB1 (also known as Kv2.1), and further promotes a reduction in the rate of activation and inactivation of the delayed rectifier voltage-gated potassium channel KCNB1. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNG3 is a regulatory alpha subunit that cannot form a functional homo-tetrameric channel. It forms hetero-tetrameric channels (with other functional alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.	0.00490417
NZ_LR792628.1\|WP_004142782.1\|1180382_1180925_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.4294e-28

>NZ_LR792628.1|WP_009308509.1|1184304_1184598_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLMVVTENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQVIQLSDGGNVVMAWATNSESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_LR792628.1|WP_016529002.1|1183384_1184305_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREAPPARRSVEQLRGIEGSRVRQTYALLAKRYGVKWHGRNYDPKDWARGDVVNQCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAASHPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLSVGEIEPPQPPPDMLPPAIPEPESMGDKGHRGHG
>NZ_LR792628.1|WP_016529005.1|1182009_1182756_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDVPGEVRHSHELPSRSALLGLLLAALGIRREEEQRLNAFNQHYSFLLCASSEPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVAVTPDAPYSLEQLHEALRYPVFPLYLGRKSHPLALPLMPLLLEGHAAEVLRQAYRQYQERFNLLRLSLRQLQDQCWWEGEHAGLVANKILRRRDCPLNRQHWLFGERSMNQGTWLSKEETCTSQE
>NZ_LR792628.1|WP_009308513.1|1180943_1181999_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVMLGGATRLRISSQSLKRAWRTSELFEHALAGHIGIRSGRIAREAAEILVKSGIEPRKAVDYVKAIGECFGKVKTKADQNDPLKCSETEQLAHISPAEFDAVKALAHRLAEEKRAATKEEAALLRHDRMAVDIAMFGRMLADQPTYNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVNNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYQPINGGDQLDVAVQRITALRENMNTVYGQQTAFQHFDVMNKQGSMNDVLDFICA
>NZ_LR792628.1|WP_004142782.1|1180382_1180925_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNVVSDEHKATLRQWHEELQEKRGLRASLRRSATLNDVCLSEGFHSLMVQTHSLWNTQGKAWRFTALALVAALAAQVKTIDDRQTFAAQLGQKTGDTPVMSRLRFARLSAVKTPDELLRQLRRAISLLHGSVNLLSLAEDIFRWCREQDDLLNHRRRQQRPIEFIRIRWALDYYQAGDAE
>NZ_LR792628.1|WP_016529006.1|1178829_1180386_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNTFSLLTTAWLPVRYRDGTTGKLAPVGLTDEDVVDIAATRADLQGAAWQFLIGLLQCAVAPKNRNGWEDTWEEGLSAETLVAALAPQEAAFQFGPDTPSFMQDFDSLGGDKVSIASLLPEVPGAQTTKFNKDHFIKRGVTNSFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLIELQEYEGERLTPLWRKLWLNVLPQDAADMPLPAAYDESVFPWLAPTRTSEQASAITTPEQVDKLQAYWGMPRRIRLDFAATQPGTCDICASESDGLLSQMAVKNYGINYDGWRHPLTPYRLALKGDGGFFSVKPQPGGLIWRDWLGLSQDNQTESNSEYPAQVVKVFNARGLRNIKAGLWGFGADFDNMKIRCWYEHHFPLLTDESTIPDLRKAAQTAARLLSLLRSALKEAWFDDPKGARGDFSFIDIDFWNQTQPLFLNLIHELENGQPAQERLDKWQRELWLFVRRCFDDRVFTNPYENNDLARCMAARKKYFATSAEKQSAKAAKAKKQEAAQ
>NZ_LR792628.1|WP_016529007.1|1176154_1178818_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYNYWGKTRQGEPGGGDDYHLLCWHSLDVAAMGYWMVKRDIYGLAGYFRRLGINDIENAAQFFAWLLCWHDIGKFSRSFQQLYTHDNLCVQKDSRNTYEKISHASLGYWLWNSHFSDCPELFPNSSLSIRKLKRVITLWMPLTTGHHGRPPVGMRALDNFHPSDIKAAHDFLLAIKSLFPDMEIPSFWDDDAGVELFSHLSWFISAAVVLADWTGSSTRFFPRVSQRMQLDVYWRQANAQAEQAVNVFPPAAAVAPFTGIETLFPFIQHPTPLQKAVLELDISQPGPQLFILEDVTGAGKTEAALILTHRLMSAGKAQGLFFGLPTMATANAMFDRLAQSWLALYQSDARPSLVLAHSARGLMEGFNQRIWPGAVSGSEEPDDEQSFSQGCAAWFADSNKKALLAEVGVGTLDQALMAVMPFKHNNLRLLGLDNKVLLADEIHAYDAYMSRILESLIEQQARSGNCVILLSATLSQQQRDKLVASFSRGSGCALAAPLLGDDDYPWLTQVAGREVISRYVATRKEVERSVNIGWLDNEEACLTRIEQSASEGRCIAWIRNSIDDAVRIYRQLLARGAIPAEKISLFHSRFAFYDRQRIETETLSHFGKDDSTQRAGRVLIATQVIEQSLDIDMDDMISDLAPIDLLIQRAGRLQRHIRDRRGRLKIGGEDERAAPQLLILAPEWDEAPQEEWLTSALRNSAYVYPDHGRLWLTQRVLRQQGAIRMPQSARLLIESVYGEDIGIPDGLAKAEQAQLAKYYCDRAFAHQMLLNFKPGYSPDSSDFLADKLSTRLAEESITLWLAKNVDGQLLPYACGEHQWEMSMLRVRESWWRKHKAEFTLLAEKPLQQWCVQQHQNPDFAVVIIVTDSPDCGYSASEGLIGTMEV
>NZ_LR792628.1|WP_002915177.1|1175213_1175948_+|phosphoadenosine-phosphosulfate-reductase
MSVLDLNALNALPKVERILALAETNAQLEKLDAEGRVAWALENLPGNYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAAESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRATLPVLAVQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LR792628.1|WP_016529008.1|1173402_1175115_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAAENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQKKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIVASVPEDQKARIEKLARDHGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDKVEGVMSKHGVSDEHIVTRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHIGGNRNGTRIPRMYRENITESEILDSLDEPVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_LR792628.1|WP_004174642.1|1171603_1173403_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPPSNLLPLNPEQLARLQAATTDFTPTQLAWVSGYFWGVLNQQSGTAVAAPAPAAEVPTITLISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIAAEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPKLDGTAFAVFGLGDTSYEFFCQSGKDFDNKLAELGAERLLDRVDADVEYQAAAAEWRARVVEALKARAPVAAPAQLATSGAVNDIHTSPYTKEAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPQLVKELVELLWLKGDEPVTVEGKTLPLSEALQWHFELTVNTATIVENYATLTRSESLLPLVGDKAQLQQYAAATPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYEIEGRARAGGASSFLADRVEEDGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAQGKNWLFFGNPHFTEDFLYQVEWQSYVKEGLLTRIDLAWSRDQQQKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVENTLLEVIAEYGAMDAEAADEFLSELRVERRYQRDVY
>NZ_LR792628.1|WP_042940406.1|1186003_1188025_-|hypothetical-protein
MLTRKLPLAAFLAATLVAASSHACGPFFPNYLLADRQANLLYLPEGSFALESSRLVLADPRLPQWRDTSADKPAAPTAQDLLLKEIRASGSLAAPEKMAADLPTASRLYVLGAVAFAERDSRARDYFRQLLALPVEQQGEWGLKARYSLARDLMRDYPLTDSRSSHGSEQELREAFDLYQQIIDAVREGQQDPELLSLASLGQQGRIKHWQSDPIAAAHLYARQAAQGSPSGSLSLRYTVDVLNHPENEQFLQPGLDDPVIQQLLIASFFTRSSNLLYEPEPRPFDPTEVKNYHNELIAKLAQKVDRDMAGSDRLIALAYRNGQYPLVTLMLKNAKENGLTAWVRAKMALRAGDVNAAAAWYAKAAASFPPNETWGFQSYSDDIVGEEFVTPVCRIHAEQAILALNRDDYLQAMRLMYQAKENYWPDVAHIAERVLTVNELLAFVDKYVPAPSPSAPTTPKNAGRDSADARLRNLLARRLMRAGQYQKALAYFALAEDRDAARAFIDAFPKKGHKTAQAQGWWQAALILRHQGMELTGYEMAPDFALYGGGYSWPYYNQGPEDNSAVTSWISDGERQRVQRSLPKQDSHFLHYRWQAVTLAEKAADLLPYKSQAYAAVLCNATGWVWGRDAQLTKRLYQRYVKYGAPFPWAENFGRDCPEPDFSAIQETVKKQ
>NZ_LR792628.1|WP_016529000.1|1188011_1189199_-|DUF3142-domain-containing-protein
MINLRCSGVFFLLLAASAGALADSQVYIWQRVWNDQHKTALQQSQALFATLRVLGIQFHPQEGVRLARVNTSLLQQDGRPVWLVVRLDGSLTQLDTTTMLPQIKRLVTHWRKAGVNLTAIEIDYDAPTSRLSDYQRLLMAMRQGLPSDITLSITALPTWLTSPGLRPLLKAVDSSVLQLHSVQSPGTGLFDPTLARRWSRQYALIAPHPFYLALPAYGSALIAAPGQPASVESESPLWIAAEKQELSVSPQQIDTFIRELEQQPPYHFSGIVWFRLPLDNDTRAWSLSTLAAVIRHQPLTSCWQWLALPDKASASAESTLYELAIKNTGNIDAPLPAKITLTTEDCLAADGAGSYRFSEQTFSLTAPALLRAGRTQAIGWARCSTPPQGKFHVNP
>NZ_LR792628.1|WP_009308506.1|1189234_1190290_-|aminopeptidase
MFSALCRRLLPLALGTGFVFAAAPAFSALGDTASSQARHIATVFPGRMTGTPPEMLSADYLRQQFALMGYQSDVRSFNTRYIYTDSNQRKNWHNATGSTVIAAHEGKVRQQIIIMAHLDTYAPQSDKDVENNLGGLTLQGIDDNAMGLGVLLELAEHLKNVPTRYGIRFIATSGEEEGRLGAQNLLQRMSEAEKKNTLLVINLDNLVVGDKLYFNSGRSTPASVRKLTRDRALAIARSKGIAAYTNPGLNPAYPKGTSCCNDASVFDNAGIPVLSVEATNWSLGKKDGYQQRSKSASFPQGTSWHDVQLDNQQYIDHALPGRIEHRGREVVKVMLPLVKELAKVEKPSSLK
>NZ_LR792628.1|WP_074185947.1|1190536_1191943_+|uroporphyrinogen-III-C-methyltransferase
MPLFAELKQRPVLVIGGGEIAERKIKFLLRAQAQVQVVAETLSPALADLAARQALSWRATEFSDSLVDDVFLVIAATEDEALNQRVFAAANARYRLVNVVDNQALCSFVFPSIVDRSPLLVAISSSGKAPVLSRILREKIEALLPTNLGRLAESASYWRNHLKTRLTTTEARRRFWERVFTGRFASLMVAGNSAEAEKALQDELDKPERETGEIILVGAGPGDAGLLTLRGLQVIQQADVVFHDHLVTQPVLELVRRDAELICVGKRAGEHSVPQHETNQLLVEAAKAGKTVVRLKGGDPFIFGRGAEELQAAAEAGIPFQVVPGVTAAAGATAYAGIPLTHRDYAQSAVFVTGHYKPDSAPFDWSLLAKSQQTLAIYMGTMKAAEISAQLIAHGRDSDTPVAVISRGTRDDQQTITGTLQQLEHLAKDAPMPALLVVGEVVQLHQQLAWFQHTSSAEGFNASVVNLA
>NZ_LR792628.1|WP_002915160.1|1191952_1192861_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMMYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTELDIWQYIYLENIEIVPLYLAAERPVLERDGMLMMIDDDRIDLQPGEVIEKRMVRFRTLGCWPLTGAVESEAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_LR792628.1|WP_004181094.1|1192870_1194298_+|sulfate-adenylyltransferase-subunit-CysN
MNTTIAQQIANEGGVEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAVNKMDLVEFSEARFNEIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSANMPWYSGPTLLEVLETVEIQRVVESQPLRFPVQYVNRPNLDFRGFSGTVASGTVQVGQRLKVLPSGVESSVARIVTFDGDLQEAAAGEAITLVLKDEIDISRGDLLVDAQASLPAVQSASIDVVWMAEQPLTPGQSYDIKIAGKKTRARVDAIRYQVDINNLTQREVESLPLNGIGLVELTFDEPLVLDPYQQNPVTGGLIFIDRLTNVTVGAGMVNEPHLQASTSASQYSAFELELNQLIRKHFPHWDARDLLGGK
>NZ_LR792628.1|WP_002915158.1|1194297_1194903_+|adenylyl-sulfate-kinase
MAQHDENVVWHAHPVTQQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHERGVSTYLLDGDNVRHGLCSDLGFSDEDRKENIRRVGEVARLMVDAGLVVLTAFISPHRAERQMVRERLGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPEKAEIHLDGEQLVTNLVHQLLDLLQQSDIIRS
>NZ_LR792628.1|WP_002915157.1|1194953_1195280_+|DUF3561-family-protein
MRNTQNLSIIRSEPPPAIGDETTWSLSGAAVGFISWLLALGIPFLLYGSNTLFFLLYTWPFFLALMPVAVVVGIALHSLLNGKLLYSVSATILTVGLMFALLFLWLLG
>NZ_LR792628.1|WP_002915156.1|1195420_1195738_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGLHDYTRVNDDVTAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTRPGETFYRLVPDASKRNQASGQQQNNR
>NZ_LR792628.1|WP_004174645.1|1195757_1196468_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATFPGVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHAVAALLADARVQRVVIAVSPGDRRFSQLPLAQHPQITVVDGGAERADSVLAGLQALPEAQWVLVHDAARPCLHQDDLSRLLSLCETSRVGGILAAPVRDTMKRAEPGKTAIAHTVDRNDLWHALTPQLFPRELLVDCLTRALNEGATITDEASALEYCGFHPQLVAGRADNIKVTRPEDLALAEFYLTRSRHQEKA

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Crispr_ID: NZ_LR792628_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR792628_1

1184695-1185334

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_LR792628_1

>merge|NZ_LR792628|1|1184695-1185334|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCACAAAGTCGACGGTAACCCGTGGAGCAAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATTTCAGAGAGTGCACACCCGCTTGATGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTGGTTCAGCAGGTTAAACCGCTGGCGCAAGTGTTCCCCGCGCCAGCGGGGATAAACCTGATTCGCGCCAGCTGAAAGTGTGGGCGCGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCCGCCATAATTGTCAGAAATATATATTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGAGATCGGGCAAGCCGCTCGTTTATGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTGTGAGCTGCCCGCGAGGGTCCGCAAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAATTCTGATTTTTTTACCGTGGATTTCCACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTATGGGAGTTAATGACATGGAACAGAAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTAAAAGTCGGCGACGTCACCCTCTGCCAGGTGTTCCCCGCGCCAGCAACTTTTCGCAGG

>NZ_LR792628|1|1|1184695-1185272|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAGTCGACGGTAACCCGTGGAGCAAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTTCAGAGAGTGCACACCCGCTTGATGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTGGTTCAGCAGGTTAAACCGCTGGCGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GATTCGCGCCAGCTGAAAGTGTGGGCGCGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGCCATAATTGTCAGAAATATATATTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGAGATCGGGCAAGCCGCTCGTTTATGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGTGAGCTGCCCGCGAGGGTCCGCAAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAATTCTGATTTTTTTACCGTGGATTTCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTATGGGAGTTAATGACATGGAACAGAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_LR792628|1|1|1184695-1185334|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAGTCGACGGTAACCCGTGGAGCAAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTTCAGAGAGTGCACACCCGCTTGATGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTGGTTCAGCAGGTTAAACCGCTGGCGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GATTCGCGCCAGCTGAAAGTGTGGGCGCGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGCCATAATTGTCAGAAATATATATTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGAGATCGGGCAAGCCGCTCGTTTATGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGTGAGCTGCCCGCGAGGGTCCGCAAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAATTCTGATTTTTTTACCGTGGATTTCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTATGGGAGTTAATGACATGGAACAGAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTAAAAGTCGGCGACGTCACCCTCTGCCAG
GTGTTCCCCGCGCCAGCAACTTTTCGCAGG

>NZ_LR792628|1|1|1184695-1185272|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAGTCGACGGTAACCCGTGGAGCAAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTTCAGAGAGTGCACACCCGCTTGATGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTGGTTCAGCAGGTTAAACCGCTGGCGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GATTCGCGCCAGCTGAAAGTGTGGGCGCGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGCCATAATTGTCAGAAATATATATTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGAGATCGGGCAAGCCGCTCGTTTATGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGTGAGCTGCCCGCGAGGGTCCGCAAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAATTCTGATTTTTTTACCGTGGATTTCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTATGGGAGTTAATGACATGGAACAGAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR792628.1\|WP_002915160.1\|1191952_1192861_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LR792628.1\|WP_016529005.1\|1182009_1182756_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LR792628.1\|WP_016529006.1\|1178829_1180386_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_LR792628.1\|WP_009308513.1\|1180943_1181999_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_LR792628.1\|WP_004174642.1\|1171603_1173403_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_LR792628.1\|WP_002915158.1\|1194297_1194903_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LR792628.1\|WP_004181094.1\|1192870_1194298_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LR792628.1\|WP_002915157.1\|1194953_1195280_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_LR792628.1\|WP_074185947.1\|1190536_1191943_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_LR792628.1\|WP_009308506.1\|1189234_1190290_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LR792628.1\|WP_016529008.1\|1173402_1175115_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LR792628.1\|WP_016529000.1\|1188011_1189199_-\|DUF3142-domain-containing-protein	unknown	unknown	gnl\|CDD\|371478
NZ_LR792628.1\|WP_002915156.1\|1195420_1195738_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LR792628.1\|WP_004174645.1\|1195757_1196468_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LR792628.1\|WP_002915177.1\|1175213_1175948_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_LR792628.1\|WP_016529007.1\|1176154_1178818_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_LR792628.1\|WP_009308509.1\|1184304_1184598_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LR792628.1\|WP_016529002.1\|1183384_1184305_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LR792628.1\|WP_042940406.1\|1186003_1188025_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349729
NZ_LR792628.1\|WP_004142782.1\|1180382_1180925_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
NZ_LR792628.1\|WP_002915160.1\|1191952_1192861_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LR792628.1\|WP_016529005.1\|1182009_1182756_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.1934e-46
NZ_LR792628.1\|WP_016529006.1\|1178829_1180386_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.39928e-164
NZ_LR792628.1\|WP_009308513.1\|1180943_1181999_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.74653e-134
NZ_LR792628.1\|WP_004174642.1\|1171603_1173403_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_LR792628.1\|WP_002915158.1\|1194297_1194903_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.18847e-150
NZ_LR792628.1\|WP_004181094.1\|1192870_1194298_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LR792628.1\|WP_002915157.1\|1194953_1195280_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.97707e-47
NZ_LR792628.1\|WP_074185947.1\|1190536_1191943_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_LR792628.1\|WP_009308506.1\|1189234_1190290_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LR792628.1\|WP_016529008.1\|1173402_1175115_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LR792628.1\|WP_016529000.1\|1188011_1189199_-\|DUF3142-domain-containing-protein	gnl\|CDD\|371478	pfam11340, DUF3142, Protein of unknown function (DUF3142). This bacterial family of proteins has no known function.	5.08031e-88
NZ_LR792628.1\|WP_002915156.1\|1195420_1195738_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.98223e-63
NZ_LR792628.1\|WP_004174645.1\|1195757_1196468_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.4215e-118
NZ_LR792628.1\|WP_002915177.1\|1175213_1175948_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.60207e-138
NZ_LR792628.1\|WP_016529007.1\|1176154_1178818_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.5983e-145
NZ_LR792628.1\|WP_009308509.1\|1184304_1184598_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.32738e-63
NZ_LR792628.1\|WP_016529002.1\|1183384_1184305_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.36012e-156
NZ_LR792628.1\|WP_042940406.1\|1186003_1188025_-\|hypothetical-protein	gnl\|CDD\|349729	cd18422, BTB_POZ_KCNG3, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily G member 3 (KCNG3). KCNG3, also called voltage-gated potassium channel subunit Kv6.3 or voltage-gated potassium channel subunit Kv10.1, is an electrically silent modulatory subunit that can form functional heterotetrameric channels with KCNB1 (also known as Kv2.1), and further promotes a reduction in the rate of activation and inactivation of the delayed rectifier voltage-gated potassium channel KCNB1. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNG3 is a regulatory alpha subunit that cannot form a functional homo-tetrameric channel. It forms hetero-tetrameric channels (with other functional alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.	0.00490417
NZ_LR792628.1\|WP_004142782.1\|1180382_1180925_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.4294e-28

>NZ_LR792628.1|WP_009308509.1|1184304_1184598_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLMVVTENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQVIQLSDGGNVVMAWATNSESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_LR792628.1|WP_016529002.1|1183384_1184305_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREAPPARRSVEQLRGIEGSRVRQTYALLAKRYGVKWHGRNYDPKDWARGDVVNQCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAASHPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLSVGEIEPPQPPPDMLPPAIPEPESMGDKGHRGHG
>NZ_LR792628.1|WP_016529005.1|1182009_1182756_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDVPGEVRHSHELPSRSALLGLLLAALGIRREEEQRLNAFNQHYSFLLCASSEPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVAVTPDAPYSLEQLHEALRYPVFPLYLGRKSHPLALPLMPLLLEGHAAEVLRQAYRQYQERFNLLRLSLRQLQDQCWWEGEHAGLVANKILRRRDCPLNRQHWLFGERSMNQGTWLSKEETCTSQE
>NZ_LR792628.1|WP_009308513.1|1180943_1181999_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVMLGGATRLRISSQSLKRAWRTSELFEHALAGHIGIRSGRIAREAAEILVKSGIEPRKAVDYVKAIGECFGKVKTKADQNDPLKCSETEQLAHISPAEFDAVKALAHRLAEEKRAATKEEAALLRHDRMAVDIAMFGRMLADQPTYNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVNNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYQPINGGDQLDVAVQRITALRENMNTVYGQQTAFQHFDVMNKQGSMNDVLDFICA
>NZ_LR792628.1|WP_004142782.1|1180382_1180925_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNVVSDEHKATLRQWHEELQEKRGLRASLRRSATLNDVCLSEGFHSLMVQTHSLWNTQGKAWRFTALALVAALAAQVKTIDDRQTFAAQLGQKTGDTPVMSRLRFARLSAVKTPDELLRQLRRAISLLHGSVNLLSLAEDIFRWCREQDDLLNHRRRQQRPIEFIRIRWALDYYQAGDAE
>NZ_LR792628.1|WP_016529006.1|1178829_1180386_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNTFSLLTTAWLPVRYRDGTTGKLAPVGLTDEDVVDIAATRADLQGAAWQFLIGLLQCAVAPKNRNGWEDTWEEGLSAETLVAALAPQEAAFQFGPDTPSFMQDFDSLGGDKVSIASLLPEVPGAQTTKFNKDHFIKRGVTNSFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLIELQEYEGERLTPLWRKLWLNVLPQDAADMPLPAAYDESVFPWLAPTRTSEQASAITTPEQVDKLQAYWGMPRRIRLDFAATQPGTCDICASESDGLLSQMAVKNYGINYDGWRHPLTPYRLALKGDGGFFSVKPQPGGLIWRDWLGLSQDNQTESNSEYPAQVVKVFNARGLRNIKAGLWGFGADFDNMKIRCWYEHHFPLLTDESTIPDLRKAAQTAARLLSLLRSALKEAWFDDPKGARGDFSFIDIDFWNQTQPLFLNLIHELENGQPAQERLDKWQRELWLFVRRCFDDRVFTNPYENNDLARCMAARKKYFATSAEKQSAKAAKAKKQEAAQ
>NZ_LR792628.1|WP_016529007.1|1176154_1178818_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYNYWGKTRQGEPGGGDDYHLLCWHSLDVAAMGYWMVKRDIYGLAGYFRRLGINDIENAAQFFAWLLCWHDIGKFSRSFQQLYTHDNLCVQKDSRNTYEKISHASLGYWLWNSHFSDCPELFPNSSLSIRKLKRVITLWMPLTTGHHGRPPVGMRALDNFHPSDIKAAHDFLLAIKSLFPDMEIPSFWDDDAGVELFSHLSWFISAAVVLADWTGSSTRFFPRVSQRMQLDVYWRQANAQAEQAVNVFPPAAAVAPFTGIETLFPFIQHPTPLQKAVLELDISQPGPQLFILEDVTGAGKTEAALILTHRLMSAGKAQGLFFGLPTMATANAMFDRLAQSWLALYQSDARPSLVLAHSARGLMEGFNQRIWPGAVSGSEEPDDEQSFSQGCAAWFADSNKKALLAEVGVGTLDQALMAVMPFKHNNLRLLGLDNKVLLADEIHAYDAYMSRILESLIEQQARSGNCVILLSATLSQQQRDKLVASFSRGSGCALAAPLLGDDDYPWLTQVAGREVISRYVATRKEVERSVNIGWLDNEEACLTRIEQSASEGRCIAWIRNSIDDAVRIYRQLLARGAIPAEKISLFHSRFAFYDRQRIETETLSHFGKDDSTQRAGRVLIATQVIEQSLDIDMDDMISDLAPIDLLIQRAGRLQRHIRDRRGRLKIGGEDERAAPQLLILAPEWDEAPQEEWLTSALRNSAYVYPDHGRLWLTQRVLRQQGAIRMPQSARLLIESVYGEDIGIPDGLAKAEQAQLAKYYCDRAFAHQMLLNFKPGYSPDSSDFLADKLSTRLAEESITLWLAKNVDGQLLPYACGEHQWEMSMLRVRESWWRKHKAEFTLLAEKPLQQWCVQQHQNPDFAVVIIVTDSPDCGYSASEGLIGTMEV
>NZ_LR792628.1|WP_002915177.1|1175213_1175948_+|phosphoadenosine-phosphosulfate-reductase
MSVLDLNALNALPKVERILALAETNAQLEKLDAEGRVAWALENLPGNYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAAESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRATLPVLAVQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LR792628.1|WP_016529008.1|1173402_1175115_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAAENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQKKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIVASVPEDQKARIEKLARDHGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDKVEGVMSKHGVSDEHIVTRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHIGGNRNGTRIPRMYRENITESEILDSLDEPVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_LR792628.1|WP_004174642.1|1171603_1173403_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPPSNLLPLNPEQLARLQAATTDFTPTQLAWVSGYFWGVLNQQSGTAVAAPAPAAEVPTITLISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIAAEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPKLDGTAFAVFGLGDTSYEFFCQSGKDFDNKLAELGAERLLDRVDADVEYQAAAAEWRARVVEALKARAPVAAPAQLATSGAVNDIHTSPYTKEAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPQLVKELVELLWLKGDEPVTVEGKTLPLSEALQWHFELTVNTATIVENYATLTRSESLLPLVGDKAQLQQYAAATPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYEIEGRARAGGASSFLADRVEEDGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAQGKNWLFFGNPHFTEDFLYQVEWQSYVKEGLLTRIDLAWSRDQQQKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVENTLLEVIAEYGAMDAEAADEFLSELRVERRYQRDVY
>NZ_LR792628.1|WP_042940406.1|1186003_1188025_-|hypothetical-protein
MLTRKLPLAAFLAATLVAASSHACGPFFPNYLLADRQANLLYLPEGSFALESSRLVLADPRLPQWRDTSADKPAAPTAQDLLLKEIRASGSLAAPEKMAADLPTASRLYVLGAVAFAERDSRARDYFRQLLALPVEQQGEWGLKARYSLARDLMRDYPLTDSRSSHGSEQELREAFDLYQQIIDAVREGQQDPELLSLASLGQQGRIKHWQSDPIAAAHLYARQAAQGSPSGSLSLRYTVDVLNHPENEQFLQPGLDDPVIQQLLIASFFTRSSNLLYEPEPRPFDPTEVKNYHNELIAKLAQKVDRDMAGSDRLIALAYRNGQYPLVTLMLKNAKENGLTAWVRAKMALRAGDVNAAAAWYAKAAASFPPNETWGFQSYSDDIVGEEFVTPVCRIHAEQAILALNRDDYLQAMRLMYQAKENYWPDVAHIAERVLTVNELLAFVDKYVPAPSPSAPTTPKNAGRDSADARLRNLLARRLMRAGQYQKALAYFALAEDRDAARAFIDAFPKKGHKTAQAQGWWQAALILRHQGMELTGYEMAPDFALYGGGYSWPYYNQGPEDNSAVTSWISDGERQRVQRSLPKQDSHFLHYRWQAVTLAEKAADLLPYKSQAYAAVLCNATGWVWGRDAQLTKRLYQRYVKYGAPFPWAENFGRDCPEPDFSAIQETVKKQ
>NZ_LR792628.1|WP_016529000.1|1188011_1189199_-|DUF3142-domain-containing-protein
MINLRCSGVFFLLLAASAGALADSQVYIWQRVWNDQHKTALQQSQALFATLRVLGIQFHPQEGVRLARVNTSLLQQDGRPVWLVVRLDGSLTQLDTTTMLPQIKRLVTHWRKAGVNLTAIEIDYDAPTSRLSDYQRLLMAMRQGLPSDITLSITALPTWLTSPGLRPLLKAVDSSVLQLHSVQSPGTGLFDPTLARRWSRQYALIAPHPFYLALPAYGSALIAAPGQPASVESESPLWIAAEKQELSVSPQQIDTFIRELEQQPPYHFSGIVWFRLPLDNDTRAWSLSTLAAVIRHQPLTSCWQWLALPDKASASAESTLYELAIKNTGNIDAPLPAKITLTTEDCLAADGAGSYRFSEQTFSLTAPALLRAGRTQAIGWARCSTPPQGKFHVNP
>NZ_LR792628.1|WP_009308506.1|1189234_1190290_-|aminopeptidase
MFSALCRRLLPLALGTGFVFAAAPAFSALGDTASSQARHIATVFPGRMTGTPPEMLSADYLRQQFALMGYQSDVRSFNTRYIYTDSNQRKNWHNATGSTVIAAHEGKVRQQIIIMAHLDTYAPQSDKDVENNLGGLTLQGIDDNAMGLGVLLELAEHLKNVPTRYGIRFIATSGEEEGRLGAQNLLQRMSEAEKKNTLLVINLDNLVVGDKLYFNSGRSTPASVRKLTRDRALAIARSKGIAAYTNPGLNPAYPKGTSCCNDASVFDNAGIPVLSVEATNWSLGKKDGYQQRSKSASFPQGTSWHDVQLDNQQYIDHALPGRIEHRGREVVKVMLPLVKELAKVEKPSSLK
>NZ_LR792628.1|WP_074185947.1|1190536_1191943_+|uroporphyrinogen-III-C-methyltransferase
MPLFAELKQRPVLVIGGGEIAERKIKFLLRAQAQVQVVAETLSPALADLAARQALSWRATEFSDSLVDDVFLVIAATEDEALNQRVFAAANARYRLVNVVDNQALCSFVFPSIVDRSPLLVAISSSGKAPVLSRILREKIEALLPTNLGRLAESASYWRNHLKTRLTTTEARRRFWERVFTGRFASLMVAGNSAEAEKALQDELDKPERETGEIILVGAGPGDAGLLTLRGLQVIQQADVVFHDHLVTQPVLELVRRDAELICVGKRAGEHSVPQHETNQLLVEAAKAGKTVVRLKGGDPFIFGRGAEELQAAAEAGIPFQVVPGVTAAAGATAYAGIPLTHRDYAQSAVFVTGHYKPDSAPFDWSLLAKSQQTLAIYMGTMKAAEISAQLIAHGRDSDTPVAVISRGTRDDQQTITGTLQQLEHLAKDAPMPALLVVGEVVQLHQQLAWFQHTSSAEGFNASVVNLA
>NZ_LR792628.1|WP_002915160.1|1191952_1192861_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMMYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTELDIWQYIYLENIEIVPLYLAAERPVLERDGMLMMIDDDRIDLQPGEVIEKRMVRFRTLGCWPLTGAVESEAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_LR792628.1|WP_004181094.1|1192870_1194298_+|sulfate-adenylyltransferase-subunit-CysN
MNTTIAQQIANEGGVEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAVNKMDLVEFSEARFNEIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSANMPWYSGPTLLEVLETVEIQRVVESQPLRFPVQYVNRPNLDFRGFSGTVASGTVQVGQRLKVLPSGVESSVARIVTFDGDLQEAAAGEAITLVLKDEIDISRGDLLVDAQASLPAVQSASIDVVWMAEQPLTPGQSYDIKIAGKKTRARVDAIRYQVDINNLTQREVESLPLNGIGLVELTFDEPLVLDPYQQNPVTGGLIFIDRLTNVTVGAGMVNEPHLQASTSASQYSAFELELNQLIRKHFPHWDARDLLGGK
>NZ_LR792628.1|WP_002915158.1|1194297_1194903_+|adenylyl-sulfate-kinase
MAQHDENVVWHAHPVTQQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHERGVSTYLLDGDNVRHGLCSDLGFSDEDRKENIRRVGEVARLMVDAGLVVLTAFISPHRAERQMVRERLGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPEKAEIHLDGEQLVTNLVHQLLDLLQQSDIIRS
>NZ_LR792628.1|WP_002915157.1|1194953_1195280_+|DUF3561-family-protein
MRNTQNLSIIRSEPPPAIGDETTWSLSGAAVGFISWLLALGIPFLLYGSNTLFFLLYTWPFFLALMPVAVVVGIALHSLLNGKLLYSVSATILTVGLMFALLFLWLLG
>NZ_LR792628.1|WP_002915156.1|1195420_1195738_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGLHDYTRVNDDVTAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTRPGETFYRLVPDASKRNQASGQQQNNR
>NZ_LR792628.1|WP_004174645.1|1195757_1196468_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATFPGVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHAVAALLADARVQRVVIAVSPGDRRFSQLPLAQHPQITVVDGGAERADSVLAGLQALPEAQWVLVHDAARPCLHQDDLSRLLSLCETSRVGGILAAPVRDTMKRAEPGKTAIAHTVDRNDLWHALTPQLFPRELLVDCLTRALNEGATITDEASALEYCGFHPQLVAGRADNIKVTRPEDLALAEFYLTRSRHQEKA

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Crispr_ID: NZ_LR792628_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR792628_3

4486801-4486940

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR792628_3

>merge|NZ_LR792628|3|4486801-4486940|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>NZ_LR792628|3|3|4486801-4486940|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR792628.1\|WP_002889733.1\|4481998_4482457_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_LR792628.1\|WP_004145825.1\|4494992_4495574_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_LR792628.1\|WP_004177335.1\|4488421_4489018_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_LR792628.1\|WP_016530028.1\|4493439_4494180_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_LR792628.1\|WP_002889726.1\|4484669_4485725_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_LR792628.1\|WP_004177332.1\|4480192_4480591_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_LR792628.1\|WP_002889742.1\|4480648_4481893_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_LR792628.1\|WP_004178678.1\|4486967_4487183_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_LR792628.1\|WP_016530034.1\|4482714_4484172_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_LR792628.1\|WP_016530033.1\|4484214_4484667_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_LR792628.1\|WP_002889720.1\|4487185_4488409_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_LR792628.1\|WP_002889696.1\|4494150_4494918_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_LR792628.1\|WP_004177331.1\|4479414_4480107_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_LR792628.1\|WP_004147186.1\|4490442_4491681_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_LR792628.1\|WP_004177336.1\|4489655_4490450_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_LR792628.1\|WP_002889716.1\|4489024_4489663_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_LR792628.1\|WP_004147193.1\|4476549_4477833_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
NZ_LR792628.1\|WP_016530032.1\|4485884_4486745_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_LR792628.1\|WP_002889795.1\|4477968_4479369_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_LR792628.1\|WP_002889702.1\|4491684_4493028_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426

Protein	Function_ID	Function_description	E-value
NZ_LR792628.1\|WP_002889733.1\|4481998_4482457_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_LR792628.1\|WP_004145825.1\|4494992_4495574_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_LR792628.1\|WP_004177335.1\|4488421_4489018_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_LR792628.1\|WP_016530028.1\|4493439_4494180_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	2.04203e-109
NZ_LR792628.1\|WP_002889726.1\|4484669_4485725_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_LR792628.1\|WP_004177332.1\|4480192_4480591_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
NZ_LR792628.1\|WP_002889742.1\|4480648_4481893_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_LR792628.1\|WP_004178678.1\|4486967_4487183_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	4.00668e-29
NZ_LR792628.1\|WP_016530034.1\|4482714_4484172_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_LR792628.1\|WP_016530033.1\|4484214_4484667_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	9.00839e-84
NZ_LR792628.1\|WP_002889720.1\|4487185_4488409_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_LR792628.1\|WP_002889696.1\|4494150_4494918_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_LR792628.1\|WP_004177331.1\|4479414_4480107_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
NZ_LR792628.1\|WP_004147186.1\|4490442_4491681_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_LR792628.1\|WP_004177336.1\|4489655_4490450_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_LR792628.1\|WP_002889716.1\|4489024_4489663_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_LR792628.1\|WP_004147193.1\|4476549_4477833_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_LR792628.1\|WP_016530032.1\|4485884_4486745_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.05583e-128
NZ_LR792628.1\|WP_002889795.1\|4477968_4479369_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_LR792628.1\|WP_002889702.1\|4491684_4493028_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0

>NZ_LR792628.1|WP_016530032.1|4485884_4486745_+|glycerophosphoryl-diester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSGLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>NZ_LR792628.1|WP_002889726.1|4484669_4485725_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_LR792628.1|WP_016530033.1|4484214_4484667_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAMVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAAHGEWFINYRMEKRVALW
>NZ_LR792628.1|WP_016530034.1|4482714_4484172_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLLEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_LR792628.1|WP_002889733.1|4481998_4482457_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_LR792628.1|WP_002889742.1|4480648_4481893_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_LR792628.1|WP_004177332.1|4480192_4480591_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_LR792628.1|WP_004177331.1|4479414_4480107_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_LR792628.1|WP_002889795.1|4477968_4479369_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_LR792628.1|WP_004147193.1|4476549_4477833_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>NZ_LR792628.1|WP_004178678.1|4486967_4487183_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVIFGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_LR792628.1|WP_002889720.1|4487185_4488409_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_LR792628.1|WP_004177335.1|4488421_4489018_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_LR792628.1|WP_002889716.1|4489024_4489663_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_LR792628.1|WP_004177336.1|4489655_4490450_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_LR792628.1|WP_004147186.1|4490442_4491681_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_LR792628.1|WP_002889702.1|4491684_4493028_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_LR792628.1|WP_016530028.1|4493439_4494180_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPISKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_LR792628.1|WP_002889696.1|4494150_4494918_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_LR792628.1|WP_004145825.1|4494992_4495574_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR792628_1	1.10\|1185273\|32\|NZ_LR792628\|CRISPRCasFinder	1185273-1185304	32	MK448234	Klebsiella phage ST11-VIM1phi8.2, complete genome	38525-38556	0	1.0
NZ_LR792628_1	1.10\|1185273\|32\|NZ_LR792628\|CRISPRCasFinder	1185273-1185304	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	43386-43417	1	0.969
NZ_LR792628_1	1.3\|1184846\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1184846-1184877	32	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	119375-119406	6	0.812
NZ_LR792628_2	2.5\|1185619\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185619-1185650	32	MG592545	Vibrio phage 1.178.O._10N.286.45.E12, partial genome	39503-39534	7	0.781
NZ_LR792628_1	1.5\|1184968\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1184968-1184999	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	845467-845498	8	0.75
NZ_LR792628_1	1.10\|1185273\|32\|NZ_LR792628\|CRISPRCasFinder	1185273-1185304	32	NZ_LR134452	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence	280634-280665	8	0.75
NZ_LR792628_2	2.7\|1185741\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185741-1185772	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	747174-747205	8	0.75
NZ_LR792628_2	2.7\|1185741\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185741-1185772	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1581095-1581126	8	0.75
NZ_LR792628_2	2.7\|1185741\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185741-1185772	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1021595-1021626	8	0.75
NZ_LR792628_2	2.7\|1185741\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185741-1185772	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1110780-1110811	8	0.75
NZ_LR792628_1	1.3\|1184846\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1184846-1184877	32	NZ_CP010057	Hymenobacter sp. DG25B plasmid, complete sequence	75828-75859	9	0.719
NZ_LR792628_1	1.6\|1185029\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185029-1185060	32	NC_014718	Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence	312337-312368	9	0.719
NZ_LR792628_1	1.9\|1185212\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185212-1185243	32	MN176229	Bacillus phage 055SW001, complete genome	17717-17748	9	0.719
NZ_LR792628_2	2.3\|1185497\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185497-1185528	32	NZ_CP010615	Phaeobacter inhibens strain P92 plasmid pP92_e, complete sequence	44598-44629	9	0.719
NZ_LR792628_2	2.3\|1185497\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185497-1185528	32	NZ_CP010634	Phaeobacter inhibens strain P78 plasmid pP78_e, complete sequence	44598-44629	9	0.719
NZ_LR792628_2	2.3\|1185497\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185497-1185528	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	639190-639221	9	0.719
NZ_LR792628_2	2.3\|1185497\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185497-1185528	32	NZ_CP010606	Phaeobacter inhibens strain P83 plasmid pP83_g, complete sequence	44606-44637	9	0.719
NZ_LR792628_2	2.3\|1185497\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185497-1185528	32	NZ_CP010712	Phaeobacter inhibens strain P66 plasmid pP66_g, complete sequence	44622-44653	9	0.719
NZ_LR792628_2	2.5\|1185619\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185619-1185650	32	MK977703	Arthrobacter phage Kumotta, complete genome	30085-30116	9	0.719
NZ_LR792628_2	2.5\|1185619\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185619-1185650	32	MN855819	Bacteriophage sp. isolate 156, complete genome	5617-5648	9	0.719
NZ_LR792628_2	2.7\|1185741\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185741-1185772	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	653626-653657	9	0.719
NZ_LR792628_2	2.8\|1185802\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185802-1185833	32	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	467616-467647	9	0.719
NZ_LR792628_1	1.5\|1184968\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1184968-1184999	32	NC_022880	Enterococcus mundtii QU 25 plasmid pQY039, complete sequence	15967-15998	10	0.688
NZ_LR792628_1	1.5\|1184968\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1184968-1184999	32	MN694051	Marine virus AFVG_250M33, complete genome	33103-33134	10	0.688
NZ_LR792628_1	1.8\|1185151\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185151-1185182	32	NZ_CP022249	Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT1, complete sequence	24125-24156	10	0.688
NZ_LR792628_1	1.8\|1185151\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185151-1185182	32	NZ_CP022249	Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT1, complete sequence	34415-34446	10	0.688
NZ_LR792628_1	1.9\|1185212\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185212-1185243	32	MN176226	Bacillus phage 035JT001, complete genome	18391-18422	10	0.688
NZ_LR792628_1	1.10\|1185273\|32\|NZ_LR792628\|CRISPRCasFinder	1185273-1185304	32	NC_021086	Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence	20665-20696	10	0.688
NZ_LR792628_1	1.10\|1185273\|32\|NZ_LR792628\|CRISPRCasFinder	1185273-1185304	32	NZ_CP012356	Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence	20518-20549	10	0.688
NZ_LR792628_2	2.4\|1185558\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185558-1185589	32	KJ025957	Serratia phage PS2, complete genome	59268-59299	10	0.688
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	369252-369283	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1564162-1564193	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1435671-1435702	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	369261-369292	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	438180-438211	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NC_017791	Deinococcus gobiensis I-0 plasmid P2, complete sequence	371740-371771	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	438176-438207	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1618879-1618910	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1547633-1547664	11	0.656
NZ_LR792628_1	1.7\|1185090\|32\|NZ_LR792628\|PILER-CR,CRISPRCasFinder,CRT	1185090-1185121	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1560624-1560655	11	0.656
NZ_LR792628_2	2.3\|1185497\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185497-1185528	32	NZ_CP013105	Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence	310830-310861	11	0.656
NZ_LR792628_2	2.3\|1185497\|32\|NZ_LR792628\|PILER-CR,CRT,CRISPRCasFinder	1185497-1185528	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1509663-1509694	11	0.656

1. spacer 1.10|1185273|32|NZ_LR792628|CRISPRCasFinder matches to MK448234 (Klebsiella phage ST11-VIM1phi8.2, complete genome) position: , mismatch: 0, identity: 1.0

tcgtaaaagtcggcgacgtcaccctctgccag	CRISPR spacer
tcgtaaaagtcggcgacgtcaccctctgccag	Protospacer
********************************

2. spacer 1.10|1185273|32|NZ_LR792628|CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 1, identity: 0.969

tcgtaaaagtcggcgacgtcaccctctgccag	CRISPR spacer
tcgtaaaagtcggcgacgtctccctctgccag	Protospacer
******************** ***********

3. spacer 1.3|1184846|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 6, identity: 0.812

atgt-ggttcagcaggttaaaccgctggcgcaa	CRISPR spacer
-tgtcgattcatcaggttaaacagctggcgcgc	Protospacer
 *** *.**** ********** ********.

4. spacer 2.5|1185619|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to MG592545 (Vibrio phage 1.178.O._10N.286.45.E12, partial genome) position: , mismatch: 7, identity: 0.781

taaaggttagacattggttagttcctcattgt	CRISPR spacer
ttaactttagacatttgttatttcctcattca	Protospacer
* **  ********* **** *********

5. spacer 1.5|1184968|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 8, identity: 0.75

ccgccgccataattgtcagaaatatatatttt	CRISPR spacer
attgcaccataattttcagcaatatatattta	Protospacer
 .  *.******** **** ***********

6. spacer 1.10|1185273|32|NZ_LR792628|CRISPRCasFinder matches to NZ_LR134452 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtaaaagtcggcgacgtcaccctctgccag	CRISPR spacer
accagcacgtcggcgatgtcaccctcggccag	Protospacer
 *  . * ********.********* *****

7. spacer 2.7|1185741|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtaacgggacgcggaaccgacaggaagccc	CRISPR spacer
ccccggcgggccgcggacccgacaggaagcct	Protospacer
 * ...**** ****** *************.

8. spacer 2.7|1185741|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtaacgggacgcggaaccgacaggaagccc	CRISPR spacer
cccgggcgggccgcggacccgacaggaagcct	Protospacer
 *  ..**** ****** *************.

9. spacer 2.7|1185741|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtaacgggacgcggaaccgacaggaagccc	CRISPR spacer
ccccggcgggccgcggacccgacaggaagcct	Protospacer
 * ...**** ****** *************.

10. spacer 2.7|1185741|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtaacgggacgcggaaccgacaggaagccc	CRISPR spacer
ccccggcgggccgcggacccgacaggaagcct	Protospacer
 * ...**** ****** *************.

11. spacer 1.3|1184846|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010057 (Hymenobacter sp. DG25B plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

atgtggttcagcaggttaaaccgctggcgcaa	CRISPR spacer
cggcttttcagcaggtcaaaacgctggcgctg	Protospacer
  *.  **********.*** ********* .

12. spacer 1.6|1185029|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NC_014718 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence) position: , mismatch: 9, identity: 0.719

gtgagagatcgggcaagccgctcgtttatgat	CRISPR spacer
ttgagatatcggtcaagccgctcgcgcgtgtc	Protospacer
 ***** ***** ***********. ..** .

13. spacer 1.9|1185212|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to MN176229 (Bacillus phage 055SW001, complete genome) position: , mismatch: 9, identity: 0.719

gctatgggagttaatgacatggaacagaaatt	CRISPR spacer
atgcctgtagttaatgacatggttcagaaatt	Protospacer
..  . * **************  ********

14. spacer 2.3|1185497|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP010615 (Phaeobacter inhibens strain P92 plasmid pP92_e, complete sequence) position: , mismatch: 9, identity: 0.719

gcgccggcacaatcgccatcacgtaaaacaaa	CRISPR spacer
aaaccatgacaatcggcatcacgcaaaacaac	Protospacer
. .**.  ******* *******.*******

15. spacer 2.3|1185497|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP010634 (Phaeobacter inhibens strain P78 plasmid pP78_e, complete sequence) position: , mismatch: 9, identity: 0.719

gcgccggcacaatcgccatcacgtaaaacaaa	CRISPR spacer
aaaccatgacaatcggcatcacgcaaaacaac	Protospacer
. .**.  ******* *******.*******

16. spacer 2.3|1185497|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.719

gcgccggcacaatcgccatcacgtaaaacaaa	CRISPR spacer
gcgccggcatgatcgccatcacggccaatggc	Protospacer
*********..************   **...

17. spacer 2.3|1185497|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP010606 (Phaeobacter inhibens strain P83 plasmid pP83_g, complete sequence) position: , mismatch: 9, identity: 0.719

gcgccggcacaatcgccatcacgtaaaacaaa	CRISPR spacer
aaaccatgacaatcggcatcacgcaaaacaac	Protospacer
. .**.  ******* *******.*******

18. spacer 2.3|1185497|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP010712 (Phaeobacter inhibens strain P66 plasmid pP66_g, complete sequence) position: , mismatch: 9, identity: 0.719

gcgccggcacaatcgccatcacgtaaaacaaa	CRISPR spacer
aaaccatgacaatcggcatcacgcaaaacaac	Protospacer
. .**.  ******* *******.*******

19. spacer 2.5|1185619|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to MK977703 (Arthrobacter phage Kumotta, complete genome) position: , mismatch: 9, identity: 0.719

taaaggttagacattggttagttcctcattgt	CRISPR spacer
tggaggttacacattggtttgttccttggttc	Protospacer
*..****** ********* ******.. * .

20. spacer 2.5|1185619|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to MN855819 (Bacteriophage sp. isolate 156, complete genome) position: , mismatch: 9, identity: 0.719

taaaggttagacattggttagttcctcattgt	CRISPR spacer
atgcggttagtcattggttggttcctcttgat	Protospacer
  . ****** ********.******* * .*

21. spacer 2.7|1185741|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtaacgggacgcggaaccgacaggaagccc	CRISPR spacer
acaggatcggactcggcaccgacaggaagcca	Protospacer
.*. .*. **** *** **************

22. spacer 2.8|1185802|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

caatcaacaggtgcggaaccggttcaagaata	CRISPR spacer
gaagttccacgtgcggaacctgttcaagaagc	Protospacer
 ** .  ** ********** *********

23. spacer 1.5|1184968|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NC_022880 (Enterococcus mundtii QU 25 plasmid pQY039, complete sequence) position: , mismatch: 10, identity: 0.688

ccgccgccataattgtcagaaatatatatttt	CRISPR spacer
acaaaagtataattttaagaaatatatatttc	Protospacer
 *.  . .****** * **************.

24. spacer 1.5|1184968|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to MN694051 (Marine virus AFVG_250M33, complete genome) position: , mismatch: 10, identity: 0.688

ccgccgccataattgtcagaaatatatatttt	CRISPR spacer
gacacaccattattgtcagatatatatatcag	Protospacer
    *.**** ********* ********.

25. spacer 1.8|1185151|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022249 (Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaattctgatttttttaccgtggatttccac	CRISPR spacer
ctttttctgatttttttaccgttgattctggt	Protospacer
    ****************** ****.. ..

26. spacer 1.8|1185151|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022249 (Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaattctgatttttttaccgtggatttccac	CRISPR spacer
ctttttctgatttttttaccgttgattctggt	Protospacer
    ****************** ****.. ..

27. spacer 1.9|1185212|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to MN176226 (Bacillus phage 035JT001, complete genome) position: , mismatch: 10, identity: 0.688

gctatgggagttaatgacatggaacagaaatt	CRISPR spacer
atgccagtcgttaatgacatggttcagaaatt	Protospacer
..  ..*  *************  ********

28. spacer 1.10|1185273|32|NZ_LR792628|CRISPRCasFinder matches to NC_021086 (Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tcgtaaaagtcggcgacgtcaccctctgccag	CRISPR spacer
agctcaaagtcggcgacctcatcctctgggga	Protospacer
   * ************ ***.******  ..

29. spacer 1.10|1185273|32|NZ_LR792628|CRISPRCasFinder matches to NZ_CP012356 (Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tcgtaaaagtcggcgacgtcaccctctgccag	CRISPR spacer
agctcaaagtcggcgacctcatcctctgggga	Protospacer
   * ************ ***.******  ..

30. spacer 2.4|1185558|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to KJ025957 (Serratia phage PS2, complete genome) position: , mismatch: 10, identity: 0.688

gttcgagcagcaattgcgtgatcacccggatc	CRISPR spacer
gttcgagcagcaattccgtgttctgaacaaca	Protospacer
*************** **** **     .*.

31. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

32. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

33. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

34. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

35. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

36. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NC_017791 (Deinococcus gobiensis I-0 plasmid P2, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
gggccagtcgctgcccgagggggtccgcaagg	Protospacer
......   ******** *.************

37. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

38. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

39. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

40. spacer 1.7|1185090|32|NZ_LR792628|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

aaattgtgagctgcccgcgagggtccgcaagg	CRISPR spacer
ctcgcccaggctgcccgcgagcgtctgcaagg	Protospacer
    . ...************ ***.******

41. spacer 2.3|1185497|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP013105 (Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence) position: , mismatch: 11, identity: 0.656

gcgccggcacaatcgccatcacgtaaaacaaa	CRISPR spacer
gcgccggcacgaacgccatcacggggtcgcgg	Protospacer
**********.* ********** ..    ..

42. spacer 2.3|1185497|32|NZ_LR792628|PILER-CR,CRT,CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

gcgccggcacaatcgccatcacgtaaaacaaa	CRISPR spacer
gcgccggcacaaaggccatcacggggtcgcgc	Protospacer
************  ********* ..    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1784019 : 1790926

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042940510.1\|1784019_1784883_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|1784893_1785667_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|1785909_1786806_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_016529104.1\|1787048_1788410_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	8.8e-207	94.5
WP_016529103.1\|1788728_1789451_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|1789447_1790926_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

1887930 : 1990499

104

Enterobacteria_phage(23.08%)

terminase,transposase,integrase,tRNA,tail,portal,holin,protease

attL 1887816:1887840|attR 1917916:1917940

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1887816:1887840	attL	NA	NA	NA	NA
WP_085955508.1\|1887930_1889051_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-51	42.4
WP_004899307.1\|1889390_1890197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016529980.1\|1890273_1892313_+	FUSC family protein	NA	NA	NA	NA
WP_004899298.1\|1892302_1892518_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_004899294.1\|1892514_1893378_+	HlyD family secretion protein	NA	NA	NA	NA
WP_016530710.1\|1896908_1897715_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_016530711.1\|1897887_1899075_+	MFS transporter	NA	NA	NA	NA
WP_004899261.1\|1899051_1901826_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016529049.1\|1902061_1902919_-	EamA family transporter	NA	NA	NA	NA
WP_004899254.1\|1902918_1903803_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_004899253.1\|1903879_1904776_+	oxidoreductase	NA	NA	NA	NA
WP_032105408.1\|1904787_1905510_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_004899245.1\|1905659_1906928_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	9.7e-75	40.7
WP_004151469.1\|1907357_1908794_+	EmmdR/YeeO family multidrug/toxin efflux MATE transporter	NA	NA	NA	NA
WP_004148975.1\|1909159_1910614_-	AMP nucleosidase	NA	NA	NA	NA
WP_004141189.1\|1910743_1910989_-	signal transduction protein PmrD	NA	NA	NA	NA
WP_042940675.1\|1911261_1912884_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004184763.1\|1912794_1913727_-	hypothetical protein	NA	NA	NA	NA
WP_009484420.1\|1913847_1914825_-	oxidoreductase	NA	NA	NA	NA
WP_016530080.1\|1914821_1915526_-	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_016530081.1\|1916117_1917752_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_001560582.1\|1918108_1918600_+	hypothetical protein	NA	NA	NA	NA
1917916:1917940	attR	NA	NA	NA	NA
WP_115217266.1\|1918900_1920129_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.1e-168	95.0
WP_014228879.1\|1920735_1921080_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_016160636.1\|1921122_1921317_-	DUF1482 family protein	NA	NA	NA	NA
WP_012542200.1\|1922159_1922549_-	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
WP_012542199.1\|1922650_1922866_+	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_014907826.1\|1922868_1923423_+	hypothetical protein	NA	NA	NA	NA
WP_171819471.1\|1924243_1924915_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.9e-61	69.5
WP_016528969.1\|1924928_1925369_+	hypothetical protein	NA	NA	NA	NA
WP_016528968.1\|1925747_1926329_+	ComF family protein	NA	NA	NA	NA
WP_016528967.1\|1926331_1926886_+	hypothetical protein	NA	NA	NA	NA
WP_016528966.1\|1927308_1928013_-	hypothetical protein	A0A1B1IPD9	uncultured_Mediterranean_phage	2.5e-19	41.6
WP_012542186.1\|1928365_1928599_+	DinI family protein	K7PM44	Enterobacteria_phage	1.7e-25	71.1
WP_077253592.1\|1928610_1928901_+	hypothetical protein	H6WRY6	Salmonella_phage	1.4e-16	56.9
WP_016528965.1\|1928941_1929334_+	LexA DNA binding domain-containing protein	K7PHB4	Enterobacterial_phage	6.8e-11	35.6
WP_174893368.1\|1929534_1930566_+	DUF968 domain-containing protein	S5MW46	Escherichia_phage	9.9e-94	48.4
WP_016528963.1\|1930578_1930926_+	antitermination protein from phage origin	A0A0P0ZCW0	Stx2-converting_phage	3.1e-52	83.6
WP_016528962.1\|1930944_1931829_-	hypothetical protein	NA	NA	NA	NA
WP_023159888.1\|1931838_1932351_-	hypothetical protein	NA	NA	NA	NA
WP_016528961.1\|1933303_1933540_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	2.1e-28	87.0
WP_042940377.1\|1933517_1934048_+	lysozyme	G9L6J6	Escherichia_phage	3.1e-83	83.2
WP_046044041.1\|1934080_1934557_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_165454527.1\|1934638_1934803_+	hypothetical protein	NA	NA	NA	NA
WP_016528958.1\|1934786_1935119_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.6e-53	83.6
WP_016528957.1\|1935100_1935421_+	hypothetical protein	NA	NA	NA	NA
WP_016528956.1\|1935420_1935843_+	hypothetical protein	Q6UAS0	Klebsiella_phage	1.0e-41	63.5
WP_016530358.1\|1936074_1936563_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	2.5e-71	87.0
WP_016530357.1\|1936562_1938665_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	84.0
WP_016530356.1\|1938661_1938874_+	hypothetical protein	A5LH28	Enterobacteria_phage	2.2e-24	80.0
WP_016530355.1\|1938873_1940376_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	6.2e-246	83.0
WP_071609143.1\|1940326_1942348_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	81.8
WP_016530353.1\|1942431_1942758_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	8.1e-34	66.7
WP_023342887.1\|1942750_1943026_+	hypothetical protein	K7PH43	Enterobacteria_phage	1.1e-23	57.1
WP_016530351.1\|1943029_1943608_+\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.7e-79	81.2
WP_016530350.1\|1943604_1944006_+\|tail	minor tail family protein	K7PHM6	Enterobacterial_phage	2.7e-55	75.6
WP_016530349.1\|1944014_1944758_+\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	1.7e-111	83.0
WP_072216832.1\|1944768_1945197_+\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	2.7e-37	60.0
WP_071609142.1\|1945217_1945532_+\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	5.0e-41	75.0
WP_174893369.1\|1945515_1948659_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	72.9
WP_016530343.1\|1948663_1949011_+\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	1.4e-39	67.0
WP_016530342.1\|1949007_1949763_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.3e-130	84.1
WP_023342884.1\|1949764_1950475_+	C40 family peptidase	Q6UAW4	Klebsiella_phage	1.1e-136	90.7
WP_016530340.1\|1950506_1951097_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.5e-81	77.0
WP_174893370.1\|1951159_1959964_+	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	44.1
WP_016532336.1\|1960025_1961522_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	3.4e-127	64.2
WP_004892953.1\|1961676_1961829_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_004224172.1\|1962101_1962815_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004190914.1\|1962811_1963204_-	hypothetical protein	NA	NA	NA	NA
WP_004150797.1\|1963196_1963520_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_042942835.1\|1963639_1963816_-	hypothetical protein	NA	NA	NA	NA
WP_004140530.1\|1963969_1964197_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004140529.1\|1964309_1965503_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004150795.1\|1966124_1966310_+	general stress protein	NA	NA	NA	NA
WP_004148027.1\|1966400_1966895_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004140514.1\|1966921_1967428_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004179357.1\|1967444_1968332_+	manganese catalase family protein	NA	NA	NA	NA
WP_004140511.1\|1968387_1969794_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_046043052.1\|1969790_1970801_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140506.1\|1970916_1971114_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|1971680_1972313_+	DNA-binding protein	NA	NA	NA	NA
WP_004140501.1\|1972352_1972532_+	hypothetical protein	NA	NA	NA	NA
WP_174893371.1\|1972929_1973634_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004150789.1\|1973746_1973911_-	hypothetical protein	NA	NA	NA	NA
WP_016532342.1\|1973944_1975453_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_016532343.1\|1975573_1976464_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046043054.1\|1976470_1978255_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004140494.1\|1978328_1979537_-	HD domain-containing protein	NA	NA	NA	NA
WP_046043056.1\|1979839_1980883_+	type II asparaginase	NA	NA	NA	NA
WP_004148038.1\|1981543_1982458_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150783.1\|1982547_1983186_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004140489.1\|1983316_1983580_+	DUF2534 family protein	NA	NA	NA	NA
WP_016531462.1\|1983639_1983759_-	hypothetical protein	NA	NA	NA	NA
WP_004213093.1\|1983876_1983951_-	protein YoaJ	NA	NA	NA	NA
WP_004150782.1\|1983950_1984052_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_016531463.1\|1984109_1985123_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.1e-12	33.8
WP_016531464.1\|1985423_1985663_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|1985652_1985991_-	DUF488 family protein	NA	NA	NA	NA
WP_004176547.1\|1985995_1986505_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004140471.1\|1986650_1987343_+	CTP synthase	NA	NA	NA	NA
WP_171819493.1\|1987374_1988550_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004224197.1\|1988657_1989452_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002901080.1\|1989435_1989882_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901088.1\|1989998_1990499_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

2293683 : 2374797

Escherichia_phage(19.05%)

terminase,transposase,integrase,tail,capsid,head,portal,holin,protease

attL 2284197:2284213|attR 2346173:2346189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2284197:2284213	attL	NA	NA	NA	NA
WP_002903396.1\|2293683_2294199_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	4.6e-23	53.5
WP_002903398.1\|2294491_2294650_+	hypothetical protein	NA	NA	NA	NA
WP_016530209.1\|2295261_2295522_-	pyocin activator PrtN family protein	A0A1L5C290	Pseudoalteromonas_phage	1.5e-11	43.7
WP_004213359.1\|2295641_2295827_-	hypothetical protein	NA	NA	NA	NA
WP_016530208.1\|2295823_2296486_-	hypothetical protein	Q71T76	Escherichia_phage	2.2e-54	56.0
WP_004213355.1\|2296478_2296823_-	hypothetical protein	NA	NA	NA	NA
WP_004213351.1\|2296950_2297736_-	hypothetical protein	C7BGF1	Burkholderia_phage	5.3e-63	52.9
WP_004213349.1\|2297735_2298035_-	hypothetical protein	K7PJS4	Enterobacterial_phage	9.4e-13	46.7
WP_016530207.1\|2298802_2299462_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	7.3e-74	62.7
WP_016530206.1\|2299554_2299752_+	Cro/Cl family transcriptional regulator	H9C161	Pectobacterium_phage	2.7e-16	66.1
WP_004213338.1\|2299777_2300239_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_004184738.1\|2300476_2300656_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.6e-15	75.0
WP_016530205.1\|2300645_2301584_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.6e-101	74.5
WP_016530204.1\|2301580_2302390_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	4.5e-110	68.9
WP_004184734.1\|2302399_2302777_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
WP_004213334.1\|2302789_2303770_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.1e-134	66.6
WP_004213332.1\|2303783_2304362_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.5e-48	56.1
WP_129015083.1\|2304473_2305046_+	hypothetical protein	NA	NA	NA	NA
WP_004213330.1\|2305138_2305534_+\|holin	phage holin family protein	G8C7V8	Escherichia_phage	1.5e-45	73.1
WP_016530201.1\|2305520_2305802_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.6e-30	71.0
WP_016530200.1\|2305801_2306431_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.4e-103	88.0
WP_016530199.1\|2306438_2306714_+	hypothetical protein	G8C7W1	Escherichia_phage	1.7e-05	36.0
WP_077260995.1\|2306996_2307872_+	DUF4747 family protein	NA	NA	NA	NA
WP_016530196.1\|2307876_2308503_+	hypothetical protein	NA	NA	NA	NA
WP_016530194.1\|2309136_2309487_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	7.8e-51	79.8
WP_016530193.1\|2309644_2310142_+\|terminase	phage terminase small subunit P27 family	A0A1W6JP17	Morganella_phage	5.7e-63	73.9
WP_016530192.1\|2310145_2311897_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	6.7e-252	72.5
WP_016530191.1\|2311893_2312055_+	hypothetical protein	NA	NA	NA	NA
WP_016530190.1\|2312044_2313271_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.2e-208	85.3
WP_000999827.1\|2313263_2313863_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
WP_004104235.1\|2313872_2315111_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	6.8e-158	69.2
WP_016530189.1\|2315188_2315506_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	1.8e-22	51.0
WP_016530188.1\|2315514_2315853_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	7.8e-40	70.5
WP_016530187.1\|2315849_2316299_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	7.4e-62	81.9
WP_016530186.1\|2316295_2316643_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
WP_016530185.1\|2316699_2317404_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	6.6e-81	67.4
WP_016530184.1\|2317434_2317839_+\|tail	phage tail assembly chaperone	K7PKV6	Enterobacterial_phage	3.2e-32	57.4
WP_016530183.1\|2317841_2318147_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_016530182.1\|2318220_2318454_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_016530181.1\|2318514_2321904_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	60.6
WP_004177132.1\|2321924_2322398_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-55	62.1
WP_004864228.1\|2322384_2322861_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	4.8e-51	65.8
WP_022615519.1\|2322873_2323254_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.6e-57	80.2
WP_016530179.1\|2323250_2326328_+	hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	61.5
WP_039108567.1\|2326400_2328554_+	hypothetical protein	B5TAB2	Burkholderia_phage	4.8e-90	42.2
WP_022615521.1\|2328566_2329301_+	hypothetical protein	NA	NA	NA	NA
WP_046043215.1\|2329356_2330001_-	hypothetical protein	NA	NA	NA	NA
WP_004214894.1\|2330168_2330468_+	hypothetical protein	NA	NA	NA	NA
WP_004214887.1\|2331668_2332769_-\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	8.3e-115	56.8
WP_022615523.1\|2332897_2334016_-	AbgT family transporter	NA	NA	NA	NA
WP_046043218.1\|2334135_2335581_-	amidohydrolase	NA	NA	NA	NA
WP_004892311.1\|2335580_2336891_-	M20 family metallo-hydrolase	NA	NA	NA	NA
WP_046043221.1\|2337057_2337966_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004143055.1\|2338067_2338631_+	DNA endonuclease SmrA	NA	NA	NA	NA
WP_004151560.1\|2338627_2339434_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025368161.1\|2339603_2340290_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_016530130.1\|2340300_2340957_+	CoA transferase subunit B	NA	NA	NA	NA
WP_025368159.1\|2340967_2342170_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_046043228.1\|2342179_2343532_+	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA
WP_016529532.1\|2343521_2344286_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_004143067.1\|2344278_2344668_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_016530664.1\|2345711_2346956_-	mechanosensitive ion channel	NA	NA	NA	NA
2346173:2346189	attR	NA	NA	NA	NA
WP_023316278.1\|2346980_2347328_-	hypothetical protein	NA	NA	NA	NA
WP_004152246.1\|2347491_2349144_-	class I fumarate hydratase	NA	NA	NA	NA
WP_046044049.1\|2349198_2350635_-	anion permease	NA	NA	NA	NA
WP_046043231.1\|2351351_2354129_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	1.2e-66	31.3
WP_016531700.1\|2354196_2355147_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_004176303.1\|2355127_2355847_-	two-component system response regulator DcuR	NA	NA	NA	NA
WP_046043233.1\|2355843_2357460_-	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
WP_016529947.1\|2357615_2357972_+	hypothetical protein	NA	NA	NA	NA
WP_016529946.1\|2358135_2359056_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_004190310.1\|2359319_2360975_+	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_085955508.1\|2361461_2362581_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-51	42.4
WP_129015084.1\|2362763_2363987_-	hypothetical protein	NA	NA	NA	NA
WP_174893380.1\|2364735_2365638_-	malonate decarboxylase subunit epsilon	NA	NA	NA	NA
WP_016531804.1\|2365637_2366255_-	malonate decarboxylase holo-ACP synthase	NA	NA	NA	NA
WP_004148291.1\|2366258_2367218_-	AEC family transporter	A0A0U2C0Y4	Salmonella_phage	2.7e-53	90.3
WP_004224637.1\|2367354_2368155_-	biotin-independent malonate decarboxylase subunit gamma	NA	NA	NA	NA
WP_016529222.1\|2368154_2368988_-	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA
WP_004143106.1\|2368980_2369280_-	malonate decarboxylase acyl carrier protein	NA	NA	NA	NA
WP_174893381.1\|2369297_2370140_-	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA
WP_016529225.1\|2370139_2371795_-	malonate decarboxylase subunit alpha	NA	NA	NA	NA
WP_002903679.1\|2372019_2373054_-	AI-2E family transporter	NA	NA	NA	NA
WP_016529226.1\|2373496_2373811_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_024623203.1\|2373854_2373971_-	hypothetical protein	NA	NA	NA	NA
WP_002903687.1\|2373984_2374797_-\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_4

3048892 : 3120932

uncultured_Caudovirales_phage(20.0%)

plate,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016531392.1\|3048892_3050149_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_002910405.1\|3050419_3051031_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004898981.1\|3051030_3051879_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910407.1\|3052062_3053010_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004200291.1\|3053134_3054814_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.0e-23	23.4
WP_004175547.1\|3054814_3055861_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002910437.1\|3056081_3056357_-	stress-induced protein YchH	NA	NA	NA	NA
WP_004180389.1\|3056629_3057214_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910443.1\|3057331_3058423_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_016530916.1\|3058505_3058835_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_046043538.1\|3059733_3061149_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_004175538.1\|3061168_3061612_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_077255016.1\|3061614_3062151_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_164995970.1\|3062131_3063148_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_046043540.1\|3063177_3064941_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_016532067.1\|3068570_3069716_-	hypothetical protein	NA	NA	NA	NA
WP_016532068.1\|3069835_3070099_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_016532069.1\|3070188_3071166_-	hypothetical protein	NA	NA	NA	NA
WP_129015098.1\|3071380_3072436_-	sel1 repeat family protein	NA	NA	NA	NA
WP_046043544.1\|3072482_3073763_-	sel1 repeat family protein	NA	NA	NA	NA
WP_038431327.1\|3073800_3075072_-	sel1 repeat family protein	NA	NA	NA	NA
WP_046043546.1\|3075071_3076943_-	phospholipase	NA	NA	NA	NA
WP_040148336.1\|3077111_3078185_-	sel1 repeat family protein	NA	NA	NA	NA
WP_046043550.1\|3078222_3079497_-	sel1 repeat family protein	NA	NA	NA	NA
WP_046043552.1\|3081060_3083760_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.2e-15	28.6
WP_032102707.1\|3084218_3085916_-	OmpA family protein	NA	NA	NA	NA
WP_004891113.1\|3085919_3086573_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_032102706.1\|3086569_3087910_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002910650.1\|3088478_3088808_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_002910652.1\|3088922_3089462_+	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_016530143.1\|3089487_3090186_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	9.0e-06	27.2
WP_002910657.1\|3090376_3090859_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_004152315.1\|3090968_3091868_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004899032.1\|3091842_3092652_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004152313.1\|3092663_3093959_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.3e-61	36.8
WP_002910715.1\|3094262_3095189_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910717.1\|3095287_3095764_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046043555.1\|3095813_3097457_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.7e-136	50.4
WP_002910720.1\|3097740_3098634_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016530335.1\|3098639_3099359_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.6e-12	26.5
WP_004189332.1\|3099355_3100231_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.5e-05	41.5
WP_004148804.1\|3100227_3101514_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_004175489.1\|3101523_3102438_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_016530773.1\|3102547_3103606_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004225356.1\|3103894_3104041_+	hypothetical protein	NA	NA	NA	NA
WP_016530774.1\|3104092_3106387_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.1e-158	41.6
WP_004175486.1\|3106415_3107624_-	propionate kinase	NA	NA	NA	NA
WP_004145486.1\|3107651_3108983_-	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_016531140.1\|3109008_3109998_-	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_002910764.1\|3110091_3111033_-	transcriptional regulator TdcA	NA	NA	NA	NA
WP_004219597.1\|3111209_3111353_+	hypothetical protein	NA	NA	NA	NA
WP_004145488.1\|3111650_3111773_+	nitrilotriacetate monooxygenase	NA	NA	NA	NA
WP_016531139.1\|3111810_3112611_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_029884237.1\|3112603_3113590_-	fatty acid desaturase	NA	NA	NA	NA
WP_002910830.1\|3114028_3114775_-\|protease	proteasome-type protease	NA	NA	NA	NA
WP_002910832.1\|3114791_3115607_-	transglutaminase family protein	NA	NA	NA	NA
WP_004184646.1\|3115603_3116533_-	alpha-E domain-containing protein	NA	NA	NA	NA
WP_046043559.1\|3116526_3117966_-	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_042940402.1\|3118251_3119637_-	carbohydrate porin	NA	NA	NA	NA
WP_115217266.1\|3119704_3120932_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.1e-168	95.0

DBSCAN-SWA_5

3634912 : 3724852

Salmonella_phage(60.0%)

plate,lysis,terminase,integrase,tRNA,tail,capsid,head,portal,protease

attL 3673452:3673467|attR 3728989:3729004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3634912_3636205_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3636295_3637639_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3637647_3638259_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_046042979.1\|3638381_3642584_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.1e-88	49.2
WP_000228469.1\|3642719_3643214_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_002898019.1\|3643746_3644715_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_046042977.1\|3644829_3646596_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.3e-21	25.9
WP_016532437.1\|3646596_3648318_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3648362_3649064_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3649417_3649636_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_016532438.1\|3649766_3652046_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.1e-165	42.0
WP_002896520.1\|3652076_3652394_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3652719_3652941_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896440.1\|3654941_3656057_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004176693.1\|3656203_3657862_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_016529507.1\|3658281_3658977_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3659092_3659992_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_004176696.1\|3660135_3661788_+	hydroxylamine reductase	NA	NA	NA	NA
WP_016529505.1\|3661798_3662767_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3662978_3663413_-	DoxX family protein	NA	NA	NA	NA
WP_004176700.1\|3663564_3665283_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_004176702.1\|3665321_3666323_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3666333_3667776_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3667863_3668877_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004209681.1\|3668873_3669704_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_174893409.1\|3669735_3670875_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3671753_3672269_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|3672495_3673224_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3673244_3673976_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
3673452:3673467	attL	NA	NA	NA	NA
WP_002896386.1\|3673982_3674699_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004141917.1\|3674698_3675367_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3675550_3676282_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016531909.1\|3676324_3677797_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3677793_3678510_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3678588_3679716_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3679757_3680246_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3680303_3681149_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3681145_3682099_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3682109_3683243_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3683406_3684519_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3684867_3685347_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3685435_3686338_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_016529763.1\|3686452_3687175_-	nitroreductase NfsA	NA	NA	NA	NA
WP_016529762.1\|3687158_3687446_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3687648_3687912_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3687918_3688302_-	inner membrane protein YbjM	NA	NA	NA	NA
WP_004179131.1\|3688568_3690254_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_000972391.1\|3690474_3690693_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3690783_3691884_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_016529761.1\|3691880_3692366_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.8e-67	80.6
WP_046042972.1\|3692362_3695440_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.4
WP_000763311.1\|3695432_3695552_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281009.1\|3695566_3695869_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_001504081.1\|3695923_3696439_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
WP_016529757.1\|3696448_3697621_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.1e-203	90.0
WP_016529756.1\|3697763_3698330_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	4.2e-86	85.7
WP_077255116.1\|3698993_3699146_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	5.8e-11	71.1
WP_016529754.1\|3699126_3699309_-	hypothetical protein	NA	NA	NA	NA
WP_046042969.1\|3699308_3701030_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.5e-152	78.4
WP_046042967.1\|3701026_3701632_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.0e-111	93.0
WP_046042965.1\|3701624_3702533_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	9.2e-144	90.7
WP_046042963.1\|3702519_3702879_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	3.6e-51	86.6
WP_016531508.1\|3702875_3703454_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_000829146.1\|3703522_3703969_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
WP_001039939.1\|3703961_3704393_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
WP_165957398.1\|3704355_3704514_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.8e-15	73.1
WP_016531511.1\|3704488_3704917_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	9.9e-48	77.3
WP_016531512.1\|3704913_3705291_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-15	38.4
WP_001513678.1\|3705292_3705805_-	lysozyme	E5G6N1	Salmonella_phage	9.0e-88	91.7
WP_000171568.1\|3705785_3706001_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868192.1\|3706004_3706208_-\|tail	tail protein X	E5G6M9	Salmonella_phage	6.8e-31	91.0
WP_016531513.1\|3706207_3706672_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.6
WP_016531514.1\|3706767_3707418_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	4.3e-111	95.4
WP_174893410.1\|3707421_3708480_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
WP_046042962.1\|3708496_3709330_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	3.3e-124	90.6
WP_016529206.1\|3709472_3711239_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_042940604.1\|3711238_3711964_+\|terminase	terminase-like family protein	E5FFI8	Burkholderia_phage	2.1e-21	31.0
WP_016529208.1\|3711960_3713001_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.2e-173	87.8
WP_016529209.1\|3713035_3714469_-	TIR domain-containing protein	NA	NA	NA	NA
WP_016529210.1\|3714684_3715527_-	hypothetical protein	A0A0M4R2T6	Salmonella_phage	1.3e-59	48.5
WP_016529211.1\|3715526_3715745_-	hypothetical protein	NA	NA	NA	NA
WP_016529212.1\|3716031_3716265_-	DinI family protein	A0A1S6L014	Salmonella_phage	1.1e-32	89.6
WP_001154434.1\|3716275_3716464_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_174893411.1\|3716617_3719032_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.8
WP_016529329.1\|3719028_3719886_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.6e-161	97.2
WP_016529330.1\|3719882_3720110_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_016529331.1\|3720109_3720343_-	DUF2732 family protein	E5G6L6	Salmonella_phage	1.2e-31	96.1
WP_016529332.1\|3720410_3720752_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.3e-55	98.2
WP_000956190.1\|3720715_3720916_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.4e-33	100.0
WP_016529334.1\|3720923_3721433_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	2.9e-86	97.6
WP_000188448.1\|3721465_3721687_-	hypothetical protein	NA	NA	NA	NA
WP_016529335.1\|3721775_3722714_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	6.1e-34	39.6
WP_046044032.1\|3722801_3723713_+	hypothetical protein	NA	NA	NA	NA
WP_074422434.1\|3723871_3724852_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.1e-97	56.9
3728989:3729004	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4183382 : 4194020

Cronobacter_phage(66.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029884077.1\|4183382_4185566_-	hypothetical protein	B5TAB2	Burkholderia_phage	1.3e-82	42.7
WP_174893424.1\|4185652_4188124_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.1e-202	45.2
WP_016531193.1\|4188110_4188506_-	C40 family peptidase	F1C5F2	Cronobacter_phage	2.3e-35	52.8
WP_004223344.1\|4188502_4188973_-	hypothetical protein	F1C5F1	Cronobacter_phage	9.9e-25	37.0
WP_023283377.1\|4188972_4189449_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.0
WP_071609155.1\|4189562_4189829_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_016531188.1\|4189805_4189985_-	hypothetical protein	NA	NA	NA	NA
WP_174893425.1\|4191602_4194020_-\|tail	phage tail protein	F1C5E9	Cronobacter_phage	7.5e-209	62.3

DBSCAN-SWA_7

4197975 : 4235092

Cronobacter_phage(19.15%)

coat,tRNA,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174893426.1\|4197975_4198443_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	9.5e-20	37.7
WP_061353713.1\|4198485_4198938_-	hypothetical protein	NA	NA	NA	NA
WP_016528886.1\|4198934_4199507_-	SocA family protein	NA	NA	NA	NA
WP_016528887.1\|4199817_4200507_-	hypothetical protein	G0ZNE7	Cronobacter_phage	3.5e-63	54.2
WP_016528888.1\|4200575_4201340_-	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	1.2e-40	43.8
WP_016528889.1\|4201398_4201782_-	hypothetical protein	NA	NA	NA	NA
WP_016528890.1\|4201778_4202147_-	hypothetical protein	F1C5E3	Cronobacter_phage	8.8e-45	80.3
WP_016528891.1\|4202149_4202512_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	2.5e-20	49.2
WP_016528892.1\|4202511_4202685_-	hypothetical protein	I6R0P9	Salmonella_phage	5.4e-13	54.4
WP_016528893.1\|4202684_4203065_-	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_159209652.1\|4203067_4203379_-	hypothetical protein	NA	NA	NA	NA
WP_016529581.1\|4203411_4204467_-\|coat	phage coat protein	A0A291AXD4	Shigella_phage	6.5e-101	53.0
WP_016529582.1\|4204463_4204925_-	hypothetical protein	B1GS72	Salmonella_phage	5.0e-29	50.3
WP_016529583.1\|4204924_4206280_-	hypothetical protein	F1C5D9	Cronobacter_phage	8.1e-128	52.4
WP_129015077.1\|4206509_4207526_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	5.9e-115	69.2
WP_016529585.1\|4207443_4208892_-	hypothetical protein	F1C5D7	Cronobacter_phage	1.9e-119	51.2
WP_016529586.1\|4208903_4210376_-	hypothetical protein	G0ZND4	Cronobacter_phage	1.8e-253	85.9
WP_016529587.1\|4210362_4210842_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	9.0e-58	85.0
WP_016529588.1\|4210874_4211510_-	hypothetical protein	I6S676	Salmonella_phage	5.5e-103	82.5
WP_016529589.1\|4212133_4212511_-	hypothetical protein	M9NYX9	Enterobacteria_phage	4.7e-09	47.5
WP_016529590.1\|4212611_4213115_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	2.9e-75	78.4
WP_004146347.1\|4213117_4213432_-	hypothetical protein	H6WRZ3	Salmonella_phage	6.3e-44	86.1
WP_016530705.1\|4214247_4214937_-	phage antitermination protein Q	I6PDF8	Cronobacter_phage	1.1e-61	54.1
WP_016530704.1\|4214933_4215464_-	HNH endonuclease	A0A193GYW9	Enterobacter_phage	3.0e-30	43.1
WP_109266547.1\|4215456_4215594_-	YlcG family protein	NA	NA	NA	NA
WP_016530703.1\|4215590_4216226_-	recombination protein NinG	M9NYX8	Enterobacteria_phage	3.5e-81	78.4
WP_016530702.1\|4216218_4216389_-	hypothetical protein	G8C7V4	Escherichia_phage	4.3e-15	73.2
WP_016530701.1\|4216369_4216837_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	1.5e-33	46.5
WP_016530700.1\|4217088_4217394_-	hypothetical protein	K7PJS3	Enterobacterial_phage	1.1e-27	62.5
WP_016530698.1\|4218297_4218486_-	hypothetical protein	A0A192Y8X2	Salmonella_phage	6.3e-23	88.7
WP_052715514.1\|4218485_4219058_-	hypothetical protein	H2BD37	Pseudomonas_phage	1.5e-22	50.5
WP_016530554.1\|4219054_4219783_-	site-specific DNA-methyltransferase	A0A2I7QM56	Vibrio_phage	1.0e-76	59.4
WP_016530553.1\|4219779_4220142_-	hypothetical protein	Q5G8U7	Enterobacteria_phage	5.2e-58	84.5
WP_016530552.1\|4220138_4220609_-	hypothetical protein	R9TME7	Aeromonas_phage	6.0e-06	32.5
WP_016530551.1\|4220605_4220899_-	hypothetical protein	O48423	Enterobacteria_phage	4.3e-26	65.6
WP_077261005.1\|4220895_4221747_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	7.9e-89	64.3
WP_016530549.1\|4221749_4222619_-	replication protein	K7PGT1	Enterobacteria_phage	7.9e-60	49.8
WP_016530548.1\|4222653_4222938_-	bacteriophage CII family protein	K7PHN8	Enterobacterial_phage	2.2e-19	56.2
WP_004201115.1\|4222978_4223206_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_032422319.1\|4223317_4224016_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	6.9e-107	83.6
WP_046042794.1\|4224094_4225015_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	5.9e-90	48.2
WP_042940647.1\|4225055_4225259_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	7.0e-20	73.1
WP_016529272.1\|4225545_4225704_+	hypothetical protein	NA	NA	NA	NA
WP_016529274.1\|4225908_4226424_+	HNH endonuclease	A0A291AXF2	Shigella_phage	8.5e-38	51.6
WP_016529276.1\|4226745_4227030_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.6e-40	79.8
WP_029602661.1\|4227045_4227891_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.5e-68	61.2
WP_016529278.1\|4227887_4228568_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	5.7e-122	91.6
WP_016529279.1\|4228564_4228723_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
WP_016529281.1\|4229461_4230184_+	hypothetical protein	R9VWB9	Serratia_phage	4.8e-87	66.5
WP_016529282.1\|4230180_4230558_+	DUF2591 family protein	A0A1J0GUX1	Halomonas_phage	4.0e-08	31.6
WP_016529283.1\|4230554_4230773_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
WP_016529284.1\|4230774_4231110_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_004143017.1\|4232580_4233447_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_016529287.1\|4233448_4233661_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|4233706_4235092_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR792629

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LR792628

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection