Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LR792684 Kyrpidia spormannii isolate FAVT5 chromosome 1 5 crisprs RT,cas14i,csx15,csa3,Cas14u_CAS-V,cas4,cas14k,WYL,cas14j,DEDDh,c2c9_V-U4,cas10,csm3gr7,csx10gr5,csm2gr11,csm6,cas2,cas1,cas3,cas5,cas7b,cas8b1,cas6,csx20,csb2gr5,cas7,cas8u1 0 9 5 0

Results visualization

1. NZ_LR792684
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792684_1 2698595-2698691 TypeIII NA
1 spacers
c2c9_V-U4,cas10,csm3gr7,csx10gr5,csm2gr11,csm6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792684_2 2711423-2727644 TypeIII NA
240 spacers
csm6,csm3gr7,csm2gr11,csx10gr5,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792684_3 2782309-2783815 Unclear NA
20 spacers
cas4,cas1,cas2,csb2gr5,cas7,cas8u1,cas3,WYL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792684_4 2785414-2785671 Unclear NA
3 spacers
cas4,cas1,cas2,csb2gr5,cas7,cas8u1,cas3,WYL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792684_5 2797737-2797844 Unclear NA
1 spacers
WYL,cas3,cas8u1,cas7,csb2gr5,cas4,cas1

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 1068742-1068772 5 0.839
NZ_LR792684_2 2.197|2724675|35|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT 2724675-2724709 35 NC_048651 Aeribacillus phage AP45, complete genome 11798-11832 7 0.8
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NZ_CP024423 Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence 290398-290428 7 0.774
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 805413-805443 7 0.774
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NZ_CP020441 Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence 273453-273483 7 0.774
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1007658-1007688 7 0.774
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NZ_CP031082 Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence 90040-90070 7 0.774
NZ_LR792684_4 4.6|2785600|33|NZ_LR792684|CRT 2785600-2785632 33 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 1068742-1068774 7 0.788
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NZ_HG938354 Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence 1506935-1506965 8 0.742
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NC_016586 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence 65966-65996 8 0.742
NZ_LR792684_4 4.9|2785600|35|NZ_LR792684|CRISPRCasFinder 2785600-2785634 35 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 1068742-1068776 8 0.771
NZ_LR792684_2 2.100|2718137|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT 2718137-2718173 37 NZ_LR134468 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence 59840-59876 9 0.757
NZ_LR792684_2 2.234|2727174|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT 2727174-2727210 37 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 320140-320176 9 0.757
NZ_LR792684_4 4.2|2785529|30|NZ_LR792684|PILER-CR 2785529-2785558 30 CP052389 Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1 97782-97811 9 0.7
NZ_LR792684_4 4.2|2785529|30|NZ_LR792684|PILER-CR 2785529-2785558 30 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 264092-264121 9 0.7
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NC_012527 Deinococcus deserti VCD115 plasmid 1, complete sequence 91139-91169 9 0.71
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 96799-96829 9 0.71
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 1057193-1057223 9 0.71
NZ_LR792684_4 4.3|2785600|31|NZ_LR792684|PILER-CR 2785600-2785630 31 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1095839-1095869 9 0.71
NZ_LR792684_2 2.234|2727174|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT 2727174-2727210 37 NZ_CP029832 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence 408610-408646 10 0.73
NZ_LR792684_2 2.234|2727174|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT 2727174-2727210 37 NC_016586 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence 666086-666122 10 0.73
NZ_LR792684_4 4.6|2785600|33|NZ_LR792684|CRT 2785600-2785632 33 NC_016586 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence 65964-65996 10 0.697
NZ_LR792684_2 2.7|2711855|35|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT 2711855-2711889 35 NZ_CP006990 Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence 419504-419538 11 0.686
NZ_LR792684_2 2.7|2711855|35|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT 2711855-2711889 35 CP007644 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence 397261-397295 11 0.686
NZ_LR792684_4 4.5|2785529|32|NZ_LR792684|CRT 2785529-2785560 32 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 264092-264123 11 0.656

1. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.839

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
aaacgccgccgccttctccatgcccggcttg	Protospacer
************* ********.*** *..*

2. spacer 2.197|2724675|35|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 7, identity: 0.8

cggttccgggggctcactcacatcatgatcgagtg	CRISPR spacer
aagtttaaggggctcactcacatcatggtcgaatg	Protospacer
 .***. .*******************.****.**

3. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cagcgccgccgccgtcaccatgttcgtggcg	Protospacer
 *.************* ******.**.  **

4. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtc-cgccccg	CRISPR spacer
gaacgccgccgccgcctccaggtcacggact-	Protospacer
.*************.***** *** **  *. 

5. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cagcgccgccgccgtcaccatgttcgtggcg	Protospacer
 *.************* ******.**.  **

6. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtc-cgccccg	CRISPR spacer
gaacgccgccgccgcctccaggtcacggact-	Protospacer
.*************.***** *** **  *. 

7. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NZ_CP031082 (Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cagcgccgccgccgtcaccatgttcgtggcg	Protospacer
 *.************* ******.**.  **

8. spacer 4.6|2785600|33|NZ_LR792684|CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

aaacgccgccgccgtctccatgtccgccccgga	CRISPR spacer
aaacgccgccgccttctccatgcccggcttgat	Protospacer
************* ********.*** *..*. 

9. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.742

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
caacgccgccgccgtcaccatgttgagcgca	Protospacer
 *************** ******. . * *.

10. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 8, identity: 0.742

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
ccgctccgccgccgtctccagttccgcccgt	Protospacer
  .* ***************  *******  

11. spacer 4.9|2785600|35|NZ_LR792684|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.771

aaacgccgccgccgtctccatgtccgccccggaac	CRISPR spacer
aaacgccgccgccttctccatgcccggcttgatgc	Protospacer
************* ********.*** *..*. .*

12. spacer 2.100|2718137|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 9, identity: 0.757

cggccat-gtcaccgtcatcggaatcgacatcccgccc	CRISPR spacer
-gcccgcggtcaccgtcatcggaatcgacgcccccgcg	Protospacer
 * **.. *********************..***  * 

13. spacer 2.234|2727174|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 9, identity: 0.757

cgacttcagaaggtggaggcgaagctggccgaccggg	CRISPR spacer
cttcgccagaagatggcggcgaagctggccgaagcgg	Protospacer
*  * .******.*** ***************   **

14. spacer 4.2|2785529|30|NZ_LR792684|PILER-CR matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 9, identity: 0.7

cctggccgctggcgttaactttagaaaaaa	CRISPR spacer
tctggcggctggcgttaactttatggtggc	Protospacer
.***** **************** .. .. 

15. spacer 4.2|2785529|30|NZ_LR792684|PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

cctggccgctggcgttaactttagaaaaaa	CRISPR spacer
aacatcctctggcgttaacttcagaaaatc	Protospacer
  .. ** *************.******  

16. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NC_012527 (Deinococcus deserti VCD115 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
ggccgccgccgccgtctccatagccgaacga	Protospacer
.. ******************. ***  * .

17. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cgccgccgccgccgtcgccatatccgacggc	Protospacer
 . ************* ****.**** *   

18. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cgccgccgccgccgtcgccatatccgacggc	Protospacer
 . ************* ****.**** *   

19. spacer 4.3|2785600|31|NZ_LR792684|PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
tccagccgccgccgtctccatgccggcgcat	Protospacer
    ******************.* ** *  

20. spacer 2.234|2727174|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.73

-------cgacttcagaaggtggaggcgaagctggccgaccggg	CRISPR spacer
gcccgcgcgac-------ggtggaggccaagctggccgacccgt	Protospacer
       ****       ********* ************* * 

21. spacer 2.234|2727174|37|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 10, identity: 0.73

-------cgacttcagaaggtggaggcgaagctggccgaccggg	CRISPR spacer
gcccgcgcgac-------ggtggaggccaagctggccgacccgt	Protospacer
       ****       ********* ************* * 

22. spacer 4.6|2785600|33|NZ_LR792684|CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 10, identity: 0.697

aaacgccgccgccgtctccatgtccgccccgga	CRISPR spacer
ccgctccgccgccgtctccagttccgcccgttt	Protospacer
  .* ***************  *******    

23. spacer 2.7|2711855|35|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 11, identity: 0.686

ccggaggaccggagcaacatcggatggcagattga	CRISPR spacer
acatgcgacctgagcaacatcggttggcagacgat	Protospacer
 *. . **** ************ *******. . 

24. spacer 2.7|2711855|35|NZ_LR792684|PILER-CR,CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 11, identity: 0.686

ccggaggaccggagcaacatcggatggcagattga	CRISPR spacer
acatgcgacctgagcaacatcggttggcagacgat	Protospacer
 *. . **** ************ *******. . 

25. spacer 4.5|2785529|32|NZ_LR792684|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.656

cctggccgctggcgttaactttagaaaaaagt	CRISPR spacer
aacatcctctggcgttaacttcagaaaatcaa	Protospacer
  .. ** *************.******  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 275495 : 284203 8 Synechococcus_phage(42.86%) NA NA
DBSCAN-SWA_2 300877 : 361344 46 Tupanvirus(18.18%) transposase,integrase attL 352144:352161|attR 362298:362315
DBSCAN-SWA_3 1146930 : 1181726 31 Vibrio_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_4 1301717 : 1372064 81 Bacillus_phage(25.0%) tail,portal,integrase,tRNA,head,protease,coat,terminase,capsid attL 1343736:1343784|attR 1349792:1349840
DBSCAN-SWA_5 1424020 : 1431211 8 Staphylococcus_phage(50.0%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage