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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LR792683 Kyrpidia spormannii isolate COOX1 chromosome 1 5 crisprs RT,cas14i,csa3,cas4,c2c9_V-U4,cas14k,WYL,Cas14u_CAS-V,cas14j,DEDDh,cas10,csm3gr7,csx10gr5,csm2gr11,csm6,cas2,cas1,cas3,cas5,cas7b,cas8b1,cas6,csx20,csb2gr5,cas7,cas8u1 0 13 5 0

Results visualization

1. NZ_LR792683
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792683_1 2696960-2697056 TypeIII NA
1 spacers
c2c9_V-U4,cas10,csm3gr7,csx10gr5,csm2gr11,csm6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792683_2 2709794-2726016 TypeIII NA
240 spacers
csm6,csm3gr7,csm2gr11,csx10gr5,cas2,cas1,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792683_3 2780666-2782171 Unclear NA
20 spacers
cas4,cas1,cas2,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas3,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792683_4 2783770-2784027 Unclear NA
3 spacers
cas4,cas1,cas2,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas3,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LR792683_5 2796091-2796202 Unclear NA
1 spacers
WYL,cas3,cas8u1,cas7,csb2gr5,cas4,cas1,cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 1068742-1068772 5 0.839
NZ_LR792683_2 2.197|2723043|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2723043-2723077 35 NC_048651 Aeribacillus phage AP45, complete genome 11798-11832 6 0.829
NZ_LR792683_2 2.1|2709824|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2709824-2709858 35 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 163365-163399 7 0.8
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 NC_022063 Mycobacterium phage Phelemich, complete genome 53587-53619 7 0.788
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 KF024727 Mycobacterium phage Reprobate, complete genome 53592-53624 7 0.788
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NZ_CP024423 Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence 290398-290428 7 0.774
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 805413-805443 7 0.774
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NZ_CP020441 Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence 273453-273483 7 0.774
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1007658-1007688 7 0.774
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NZ_CP031082 Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence 90040-90070 7 0.774
NZ_LR792683_4 4.6|2783956|33|NZ_LR792683|CRT 2783956-2783988 33 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 1068742-1068774 7 0.788
NZ_LR792683_2 2.1|2709824|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2709824-2709858 35 NZ_LR134450 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence 95298-95332 8 0.771
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NZ_HG938354 Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence 1506935-1506965 8 0.742
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NC_016586 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence 65966-65996 8 0.742
NZ_LR792683_4 4.9|2783956|35|NZ_LR792683|CRISPRCasFinder 2783956-2783990 35 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 1068742-1068776 8 0.771
NZ_LR792683_2 2.100|2716508|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2716508-2716544 37 NZ_LR134468 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence 59840-59876 9 0.757
NZ_LR792683_2 2.234|2725545|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2725545-2725581 37 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 320140-320176 9 0.757
NZ_LR792683_4 4.2|2783885|30|NZ_LR792683|PILER-CR 2783885-2783914 30 CP052389 Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1 97782-97811 9 0.7
NZ_LR792683_4 4.2|2783885|30|NZ_LR792683|PILER-CR 2783885-2783914 30 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 264092-264121 9 0.7
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NC_012527 Deinococcus deserti VCD115 plasmid 1, complete sequence 91139-91169 9 0.71
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 96799-96829 9 0.71
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 1057193-1057223 9 0.71
NZ_LR792683_4 4.3|2783956|31|NZ_LR792683|PILER-CR 2783956-2783986 31 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1095839-1095869 9 0.71
NZ_LR792683_2 2.140|2719187|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2719187-2719223 37 NZ_CP045395 Roseovarius sp. THAF27 plasmid pTHAF27_b, complete sequence 40623-40659 10 0.73
NZ_LR792683_2 2.140|2719187|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2719187-2719223 37 NZ_CP045413 Roseovarius sp. THAF8 plasmid pTHAF8_c, complete sequence 37904-37940 10 0.73
NZ_LR792683_2 2.161|2720603|36|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2720603-2720638 36 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 2533-2568 10 0.722
NZ_LR792683_2 2.234|2725545|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2725545-2725581 37 NZ_CP029832 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence 408610-408646 10 0.73
NZ_LR792683_2 2.234|2725545|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2725545-2725581 37 NC_016586 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence 666086-666122 10 0.73
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 NC_012854 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence 161468-161500 10 0.697
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 NZ_CP050095 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence 163515-163547 10 0.697
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 NZ_CP050083 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence 501303-501335 10 0.697
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 NC_008381 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence 373781-373813 10 0.697
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 NZ_CP049733 Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence 488982-489014 10 0.697
NZ_LR792683_3 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR 2781957-2781989 33 NZ_CP053207 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence 518026-518058 10 0.697
NZ_LR792683_4 4.6|2783956|33|NZ_LR792683|CRT 2783956-2783988 33 NC_016586 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence 65964-65996 10 0.697
NZ_LR792683_2 2.7|2710226|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2710226-2710260 35 NZ_CP006990 Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence 419504-419538 11 0.686
NZ_LR792683_2 2.7|2710226|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT 2710226-2710260 35 CP007644 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence 397261-397295 11 0.686
NZ_LR792683_4 4.5|2783885|32|NZ_LR792683|CRT 2783885-2783916 32 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 264092-264123 11 0.656

1. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.839

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
aaacgccgccgccttctccatgcccggcttg	Protospacer
************* ********.*** *..*

2. spacer 2.197|2723043|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 6, identity: 0.829

cggttccgggggctcactcacatcatgatcgaatg	CRISPR spacer
aagtttaaggggctcactcacatcatggtcgaatg	Protospacer
 .***. .*******************.*******

3. spacer 2.1|2709824|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 7, identity: 0.8

-gccgcactcccgcggccacctcctggacgcggtcg	CRISPR spacer
agccg-gccggcgcggccacttcctggacgccgtcg	Protospacer
 **** .*.  *********.********** ****

4. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to NC_022063 (Mycobacterium phage Phelemich, complete genome) position: , mismatch: 7, identity: 0.788

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
cgggtggtcgaggttttcgagcaagtccttggt	Protospacer
* *.*  .*********** ******.******

5. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to KF024727 (Mycobacterium phage Reprobate, complete genome) position: , mismatch: 7, identity: 0.788

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
cgggtggtcgaggttttcgagcaagtccttggt	Protospacer
* *.*  .*********** ******.******

6. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cagcgccgccgccgtcaccatgttcgtggcg	Protospacer
 *.************* ******.**.  **

7. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtc-cgccccg	CRISPR spacer
gaacgccgccgccgcctccaggtcacggact-	Protospacer
.*************.***** *** **  *. 

8. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cagcgccgccgccgtcaccatgttcgtggcg	Protospacer
 *.************* ******.**.  **

9. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtc-cgccccg	CRISPR spacer
gaacgccgccgccgcctccaggtcacggact-	Protospacer
.*************.***** *** **  *. 

10. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NZ_CP031082 (Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence) position: , mismatch: 7, identity: 0.774

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cagcgccgccgccgtcaccatgttcgtggcg	Protospacer
 *.************* ******.**.  **

11. spacer 4.6|2783956|33|NZ_LR792683|CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

aaacgccgccgccgtctccatgtccgccccgga	CRISPR spacer
aaacgccgccgccttctccatgcccggcttgat	Protospacer
************* ********.*** *..*. 

12. spacer 2.1|2709824|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 8, identity: 0.771

gccgcactcccgcggccacctcctggacgcggtcg	CRISPR spacer
ggtagacgtcctcggccacctcctggacgaggtcg	Protospacer
* .. ** .** ***************** *****

13. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.742

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
caacgccgccgccgtcaccatgttgagcgca	Protospacer
 *************** ******. . * *.

14. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 8, identity: 0.742

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
ccgctccgccgccgtctccagttccgcccgt	Protospacer
  .* ***************  *******  

15. spacer 4.9|2783956|35|NZ_LR792683|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.771

aaacgccgccgccgtctccatgtccgccccggaac	CRISPR spacer
aaacgccgccgccttctccatgcccggcttgatgc	Protospacer
************* ********.*** *..*. .*

16. spacer 2.100|2716508|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 9, identity: 0.757

cggccat-gtcaccgtcatcggaatcgacatcccgccc	CRISPR spacer
-gcccgcggtcaccgtcatcggaatcgacgcccccgcg	Protospacer
 * **.. *********************..***  * 

17. spacer 2.234|2725545|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 9, identity: 0.757

cgacttcagaaggtggaggcgaagctggccgaccggg	CRISPR spacer
cttcgccagaagatggcggcgaagctggccgaagcgg	Protospacer
*  * .******.*** ***************   **

18. spacer 4.2|2783885|30|NZ_LR792683|PILER-CR matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 9, identity: 0.7

cctggccgctggcgttaactttagaaaaaa	CRISPR spacer
tctggcggctggcgttaactttatggtggc	Protospacer
.***** **************** .. .. 

19. spacer 4.2|2783885|30|NZ_LR792683|PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

cctggccgctggcgttaactttagaaaaaa	CRISPR spacer
aacatcctctggcgttaacttcagaaaatc	Protospacer
  .. ** *************.******  

20. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NC_012527 (Deinococcus deserti VCD115 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
ggccgccgccgccgtctccatagccgaacga	Protospacer
.. ******************. ***  * .

21. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cgccgccgccgccgtcgccatatccgacggc	Protospacer
 . ************* ****.**** *   

22. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
cgccgccgccgccgtcgccatatccgacggc	Protospacer
 . ************* ****.**** *   

23. spacer 4.3|2783956|31|NZ_LR792683|PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.71

aaacgccgccgccgtctccatgtccgccccg	CRISPR spacer
tccagccgccgccgtctccatgccggcgcat	Protospacer
    ******************.* ** *  

24. spacer 2.140|2719187|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045395 (Roseovarius sp. THAF27 plasmid pTHAF27_b, complete sequence) position: , mismatch: 10, identity: 0.73

cgagagcaggtccgacacacgacttctgctggctggc	CRISPR spacer
agcggtcgatcccgacacacgccttctgctggcgggc	Protospacer
 * *. *.. .********** *********** ***

25. spacer 2.140|2719187|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045413 (Roseovarius sp. THAF8 plasmid pTHAF8_c, complete sequence) position: , mismatch: 10, identity: 0.73

cgagagcaggtccgacacacgacttctgctggctggc	CRISPR spacer
agcggtcgatcccgacacacgccttctgctggcgggc	Protospacer
 * *. *.. .********** *********** ***

26. spacer 2.161|2720603|36|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

aaaagcatggccgaacaaactgcgattcgcgcaaat	CRISPR spacer
atgagcattgccgagcaaactgcgattcgattagtg	Protospacer
* .***** *****.**************  .*.  

27. spacer 2.234|2725545|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.73

-------cgacttcagaaggtggaggcgaagctggccgaccggg	CRISPR spacer
gcccgcgcgac-------ggtggaggccaagctggccgacccgt	Protospacer
       ****       ********* ************* * 

28. spacer 2.234|2725545|37|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 10, identity: 0.73

-------cgacttcagaaggtggaggcgaagctggccgaccggg	CRISPR spacer
gcccgcgcgac-------ggtggaggccaagctggccgacccgt	Protospacer
       ****       ********* ************* * 

29. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to NC_012854 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence) position: , mismatch: 10, identity: 0.697

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
tgaaagaccgaggttttcgcgcaaggtcttgcc	Protospacer
. .*   ************.***** ***** .

30. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 10, identity: 0.697

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
ggaaagaccgaggttttcgcgcaaggtcttgcc	Protospacer
  .*   ************.***** ***** .

31. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 10, identity: 0.697

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
tgaaagaccgaggttttcgcgcaaggtcttgcc	Protospacer
. .*   ************.***** ***** .

32. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 10, identity: 0.697

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
ggaaagaccgaggttttcgcgcaaggtcttgcc	Protospacer
  .*   ************.***** ***** .

33. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 10, identity: 0.697

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
tgaaagaccgaggttttcgcgcaaggtcttgcc	Protospacer
. .*   ************.***** ***** .

34. spacer 3.18|2781957|33|NZ_LR792683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 10, identity: 0.697

ccgatccccgaggttttcgtgcaagttcttggt	CRISPR spacer
tgaaagaccgaggttttcgcgcaaggtcttgcc	Protospacer
. .*   ************.***** ***** .

35. spacer 4.6|2783956|33|NZ_LR792683|CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 10, identity: 0.697

aaacgccgccgccgtctccatgtccgccccgga	CRISPR spacer
ccgctccgccgccgtctccagttccgcccgttt	Protospacer
  .* ***************  *******    

36. spacer 2.7|2710226|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 11, identity: 0.686

ccggaggaccggagcaacatcggatggcagattga	CRISPR spacer
acatgcgacctgagcaacatcggttggcagacgat	Protospacer
 *. . **** ************ *******. . 

37. spacer 2.7|2710226|35|NZ_LR792683|PILER-CR,CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 11, identity: 0.686

ccggaggaccggagcaacatcggatggcagattga	CRISPR spacer
acatgcgacctgagcaacatcggttggcagacgat	Protospacer
 *. . **** ************ *******. . 

38. spacer 4.5|2783885|32|NZ_LR792683|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.656

cctggccgctggcgttaactttagaaaaaagt	CRISPR spacer
aacatcctctggcgttaacttcagaaaatcaa	Protospacer
  .. ** *************.******  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 275176 : 283177 7 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 300542 : 360998 44 Tupanvirus(18.18%) integrase,transposase attL 351798:351815|attR 361952:361969
DBSCAN-SWA_3 1146112 : 1178575 28 Vibrio_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_4 1300730 : 1371076 81 Bacillus_phage(25.0%) coat,integrase,head,tail,portal,terminase,protease,capsid,tRNA attL 1342750:1342798|attR 1348804:1348852
DBSCAN-SWA_5 1423009 : 1430200 8 Staphylococcus_phage(50.0%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage