CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Signature genes	Anti-CRISPR protein number	Self targeting spacer_number	Prophage number
CP009676	Staphylococcus schleiferi strain 5909-02, complete genome	1 CRISPR	WYL,DEDDh,cas3,DinG,cas2,cas1,cas9,csa3,TnsC,TnsB,casR	6	6	9

Results visualization

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Crispr-Cas detection and classification

Crispr_ID: CP009676_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas protein info

CRISPR-Cas info

CP009676_1

1544989-1546080

TypeII

Consensus_repeat	Method
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CRISPRCasFinder
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CRT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	PILER-CR

16 spacers

cas2,cas1,cas9

The CRISPR arrays of CP009676_1

>merge|CP009676|1|1544989-1546080|CRISPRCasFinder,CRT,PILER-CR
AATAAGTATTCATTTAAAATTACAAAGTACTAAAACGGGCTACTAATCTTTTGAACTCTGCATAGTGTTTCATTTATACCTAAAATTACAGAGTACTAAAACACCAGCCACCAGGTTGGAACAGATACCCTAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGAATTCTTCTTCTGTAACAAATCCGCGCTGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTAGTGCCATTCATAATAGTTTCGAACCCAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTGATACGCATAATACAAATCCTTACCTAAAAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACATAGGCATACACCCGTAATCAAATTTGATAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGAAGAGATCTCAAGGTTTTTTAAAGATGAGGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTAGGATAACCTTGTTTCAAAGAATTATGTTTGTTTCATTTATACCTAAAATTACAGAGTACTAAAACATCAGTTGCCTCCTTTGTTATCGTAAAACAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTCTTTATCATGTTTAAAGTTGTAGAATACAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACCTAACAAATGTGAATATACGTCTAAAGTTGGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTAGTTTTTTTATGGTCTGTAATCAACCTTAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGTGGAATTGTAGCAATCTTATTAGGTCTTGGTTTCATTTATACCTAAAATTACAGAGTACTAAAACAATGGCTTACATTAACAAATTCAACGAAATGTTTCATTTATACCTAAAATTACAGAGTACTAAAACCCAACAACTAAATAGTACCATAGGTGTTTCGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGTGTAACTCCTACTTGATTCGCAACACTCAGTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

>CP009676|1|1|1544989-1546080|CRISPRCasFinder
AATAAGTATTCATTTAAAATTACAAAGTACTAAAAC	GGGCTACTAATCTTTTGAACTCTGCATAGT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ACCAGCCACCAGGTTGGAACAGATACCCTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAATTCTTCTTCTGTAACAAATCCGCGCT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTGCCATTCATAATAGTTTCGAACCCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TGATACGCATAATACAAATCCTTACCTAAAA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATAGGCATACACCCGTAATCAAATTTGATA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAAGAGATCTCAAGGTTTTTTAAAGATGAG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGGATAACCTTGTTTCAAAGAATTATGTTT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATCAGTTGCCTCCTTTGTTATCGTAAAACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TCTTTATCATGTTTAAAGTTGTAGAATACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CTAACAAATGTGAATATACGTCTAAAGTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTTTTTTTATGGTCTGTAATCAACCTTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGGAATTGTAGCAATCTTATTAGGTCTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	AATGGCTTACATTAACAAATTCAACGAAAT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CCAACAACTAAATAGTACCATAGGTGTTTC
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGTAACTCCTACTTGATTCGCAACACTCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

>CP009676|1|1|1544989-1546080|CRT
AATAAGTATTCATTTAAAATTACAAAGTACTAAAAC	GGGCTACTAATCTTTTGAACTCTGCATAGT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ACCAGCCACCAGGTTGGAACAGATACCCTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAATTCTTCTTCTGTAACAAATCCGCGCT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTGCCATTCATAATAGTTTCGAACCCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TGATACGCATAATACAAATCCTTACCTAAAA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATAGGCATACACCCGTAATCAAATTTGATA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAAGAGATCTCAAGGTTTTTTAAAGATGAG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGGATAACCTTGTTTCAAAGAATTATGTTT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATCAGTTGCCTCCTTTGTTATCGTAAAACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TCTTTATCATGTTTAAAGTTGTAGAATACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CTAACAAATGTGAATATACGTCTAAAGTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTTTTTTTATGGTCTGTAATCAACCTTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGGAATTGTAGCAATCTTATTAGGTCTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	AATGGCTTACATTAACAAATTCAACGAAAT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CCAACAACTAAATAGTACCATAGGTGTTTC
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGTAACTCCTACTTGATTCGCAACACTCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

>CP009676|1|1|1545055-1546080|PILER-CR
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ACCAGCCACCAGGTTGGAACAGATACCCTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAATTCTTCTTCTGTAACAAATCCGCGCT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTGCCATTCATAATAGTTTCGAACCCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TGATACGCATAATACAAATCCTTACCTAAAA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATAGGCATACACCCGTAATCAAATTTGATA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAAGAGATCTCAAGGTTTTTTAAAGATGAG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGGATAACCTTGTTTCAAAGAATTATGTTT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATCAGTTGCCTCCTTTGTTATCGTAAAACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TCTTTATCATGTTTAAAGTTGTAGAATACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CTAACAAATGTGAATATACGTCTAAAGTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTTTTTTTATGGTCTGTAATCAACCTTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGGAATTGTAGCAATCTTATTAGGTCTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	AATGGCTTACATTAACAAATTCAACGAAAT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CCAACAACTAAATAGTACCATAGGTGTTTC
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGTAACTCCTACTTGATTCGCAACACTCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP009676.1\|AKS69358.1\|1543136_1543499_+\|regulator	unknown	unknown	gnl\|CDD\|130944
CP009676.1\|AKS69350.1\|1533863_1535318_+\|gamma-aminobutyrate-permease	unknown	unknown	gnl\|CDD\|223903
CP009676.1\|AKS69364.1\|1552233_1553607_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
CP009676.1\|AKS69363.1\|1548492_1551669_-\|CRISPR-associated-protein-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
CP009676.1\|AKS69355.1\|1539165_1540449_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
CP009676.1\|AKS69361.1\|1547277_1547586_-\|CRISPR-associated-protein-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP009676.1\|AKS69359.1\|1543687_1544539_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69369.1\|1556661_1556949_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69367.1\|1555263_1555470_+\|membrane-protein	unknown	unknown	unknown
CP009676.1\|AKS69354.1\|1538095_1539160_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
CP009676.1\|AKS69357.1\|1542032_1542626_-\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69362.1\|1547590_1548493_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP009676.1\|AKS69365.1\|1553609_1554344_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|224982
CP009676.1\|AKS69352.1\|1536037_1536844_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
CP009676.1\|AKS69351.1\|1535549_1535864_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69360.1\|1546254_1547274_-\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69353.1\|1537178_1538099_-\|serine-kinase	unknown	unknown	gnl\|CDD\|234920
CP009676.1\|AKS69366.1\|1554618_1555128_-\|thermonuclease	unknown	unknown	gnl\|CDD\|366169
CP009676.1\|AKS69368.1\|1555814_1556033_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69356.1\|1540640_1541993_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364

Protein	Function ID	Function description	E-value
CP009676.1\|AKS69358.1\|1543136_1543499_+\|regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.46711e-08
CP009676.1\|AKS69350.1\|1533863_1535318_+\|gamma-aminobutyrate-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	0
CP009676.1\|AKS69364.1\|1552233_1553607_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	6.09169e-30
CP009676.1\|AKS69363.1\|1548492_1551669_-\|CRISPR-associated-protein-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	1.04708e-118
CP009676.1\|AKS69355.1\|1539165_1540449_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
CP009676.1\|AKS69361.1\|1547277_1547586_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.07318e-26
CP009676.1\|AKS69365.1\|1553609_1554344_-\|glutamine-amidotransferase	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	2.53269e-84
CP009676.1\|AKS69362.1\|1547590_1548493_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.79641e-98
CP009676.1\|AKS69354.1\|1538095_1539160_-\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
CP009676.1\|AKS69352.1\|1536037_1536844_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.6503e-74
CP009676.1\|AKS69353.1\|1537178_1538099_-\|serine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	3.38596e-112
CP009676.1\|AKS69366.1\|1554618_1555128_-\|thermonuclease	gnl\|CDD\|366169	pfam00565, SNase, Staphylococcal nuclease homolog. Present in all three domains of cellular life. Four copies in the transcriptional coactivator p100: these, however, appear to lack the active site residues of Staphylococcal nuclease. Positions 14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 110 (Arg-87) [SNase numbering in parentheses] are thought to be involved in substrate-binding and catalysis.	1.57254e-45
CP009676.1\|AKS69356.1\|1540640_1541993_+\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0

>CP009676.1|AKS69359.1|1543687_1544539_+|hypothetical-protein
MSIMIWVIISALFIIVLLSLLRVKFYQNKLEVELYTKSQLLNKISKMKQEKHQFQTKEKDSSEYHLDLRRAKQTLTQDLDALVDDEKIRHYRIFTTSQIAPKNTIYPFISQFDILVVTNIGLILLNLKALKAKTFYHFEGRIPLKDESDIHQIVGHYIAHQYHNQFQSELRTHYTFSENIHENEVTYQFNKYDPYEMAEKATQNLQMHFESLVDVPVSTIGVIYCAKQNGERIDGDATPYSQVYTCENNQDFQNALQQFIATTHTNLSDASYEQVINNIGHNN
>CP009676.1|AKS69358.1|1543136_1543499_+|regulator
MNNHFKMETEAIFFYESNRKKIISELKKQHGLKLNDILFLYHLKTTNSRRISLHKVKQSIDFSLMEIHKSLTALTEKDIIGKERSTEDERKVFITIDDKQAKKMDQLLDDFNQIQKEVLQ
>CP009676.1|AKS69357.1|1542032_1542626_-|hypothetical-protein
MEENQKCHVNQLMYTLIERVPNDFKFHGEAATNLFLNDQLCLEDGIEICVNRMDLLTVLSVIPQNYRIKGLDKHGKMLNCEKHRLHQIASVEVYENEILLLNIIVYDVYNEEWMFRLNNNIRIPEKQIYYHSLKWNVDYIKPEIVLMYLLHEPVNQKQVQYCRHLIDRMSYYQFITLKVAVGEDLLRKVLTERSTYR
>CP009676.1|AKS69356.1|1540640_1541993_+|aspartate-kinase
MKVSKFGGSSVASAEQIKKVLNIVNSDNDRRIVVVSAPGKRNDDDIKTTDLLIRLYEKVVNGLDYIHKKEEILTRFQDIIDGLSLKTDVLNKIDQTLEHHISTLKDQPARLLDALKSSGENFNAQIIAAYNNEQGIPTMYLSPKEAGIVVTDDPGNAQILESSYDQINQLKNYDKKIIIPGFFGYSETNHIVTFPRGGSDITGAIVARGVKADLYENFTDVSGIYRANPKVISKPEIISEITYREMRELSYAGFSVFHDEALQPLYHYRIPVVIKNTNRPDDPGTYIVHDREIDRKNVVTGISCDKNFTSINIKKYLMNRQVGFTVNILDILAKHHISFDHMPSGIDNISIIMRSAQLAGKEQKVLEEIRQRCEIDELSVENDLAILMVVGEGMSAAVGTANKITDALAQANINLKMINQGSSEISMMFGISTKDADNAVKACYQHCYQK
>CP009676.1|AKS69355.1|1539165_1540449_-|homoserine-dehydrogenase
MKQLNVALLGLGTVGSGVVKIIEENHQQIKDTIQKDIHIKHILVRDTSKKRPLNISRYHLTEDINDILNDNDVDIIIEVMGGIEPTVDWLKAALTQKKHVITANKDLLAVHLRVLEDLAQENAVALKYEASVAGGIPIVNAINNGLNANNISKFMGVFNGTSNFILTKMTEEGTPYEDALKEAQDLGFAEVDPTDDVEGIDAARKVVITSYLSFNQVINLKDVEIEGISGVTTHDIDAAKALGYKIKLIGKGAYVNGKVEASVKPTLIAHSHQLAAVENEYNAIYVIGDAVGETMFYGKGAGSLATGSAVVSDLLNVALQFESDLHTLPPHFELKTDKTKEMMDDGETVTIKEKESYYLVINTPEVSQKQVEATLKSKLPFHKSLQIETLSPHSVAVVVVGIDHHPTTYVESEVGYHVQKVYPVEGV
>CP009676.1|AKS69354.1|1538095_1539160_-|threonine-synthase
MKLWKGLVEEYQSFLPVTDDTPKVTLNEGHTPLIYCDTISEMLGIELYVKYEGANPTGSFKDRGMAMAVTKAKEQGRKIVICASTGNTSASAAAYAARAGLKAIVVIPEGKIALGKLSQAVMYGAEIVSIEGNFDEALEIVKEVAQDGEIELVNSVNPYRIEGQKTGAFEIVDQLEGQAPDVLAIPVGNAGNITAYWKGFKTYHDANQSELPQMFGFQAEGASPIVQNKVVKNPETIATAIRIGNPASWEKAVQAIDESNGLIDAVTDEEILEAYQLMTSKEGIFSEPASNASIAGLIKLHRQGRLKQGQRVVAVLTGNGLKDPDTAIGLLENPIQALPNNKESIIQYIKDALQ
>CP009676.1|AKS69353.1|1537178_1538099_-|serine-kinase
MTKNKLSLKVPASTANLGCGFDSIGMALNKFLYIEAQIISGEKWRFVHEGPHLVGLPEDEAHYMYQIAQKVADKYRVTLPALEIKMFSDIPLARGLGSSASALVAALYIANYFGDIELSKYELLQLATNIEGHPDNVAPTIYGGLVVGYHNEETHITSVAHIDVPDVDFIVTIPSYELATTTARKVLPETLTHKEAVKYSAISNTMISALIQHNYVLAGQMMEQDGLHEPFRQHLIQDFDQIKTIAHRYHAYATVLSGAGPTILTMVKKENSGPLVRALRKEVKSCHSELATVNTTGVVSDVIHHY
>CP009676.1|AKS69352.1|1536037_1536844_-|HAD-family-hydrolase
MKIELIVMDMDDTLMTSENHLSEKTKSYLLNLQNEGYKLALASGRPTEGMLPTAKELKMDQYGSYIMSYNGAQTTDLAADEIVSKKDIEKEEFDKIVDFCRERHLFVLTYDHGKIIYDGEHEYMNRESELTGLEMEKVDDLKSYIQKSVPKVMGVDFEENIEKIIKQFGNEFNKAIDMTTSKPFFLEFMRKSVSKGAAIEALAERLDIDVNHIVAFGDSANDIEMFKTAGTAVAMDNASDEVKEQADMVTKSNDEDGIPYALEQLINK
>CP009676.1|AKS69351.1|1535549_1535864_+|hypothetical-protein
MVGQTNLFDDVLKPDERFVIVVQALENKNGQLAKRTLREYSSLTHDQMNNLFQHLKELYLDSEFEANQSAFTITVYTNLDYTADQVYAHIKRHRGKHEWTHTAK
>CP009676.1|AKS69350.1|1533863_1535318_+|gamma-aminobutyrate-permease
MEEKNLSRTLQSRHITMIAIGGAIGTGLFVATGGVIAQAGPGGAILAYIIIGIMLYFLMSSIGEMATFYPVSGAFSSYATRFVDPSLGFTMGWLYWTIWSLVTSVDVIVASNVISYWDTFHFFSPLVWSLLFLSLLFLVNVFTVKAFGEAEFWLSLIKVITIIIFIILGILMIFGILGGHYYGLKNFTIGEAPFVGGISGFLSVLLIAGFSVGGTEVVAVTAGESDNPRESMPKAIKQVFWRILLFYVLSIAVISSILAYTDPTLLNENGSIAQSPFTIVFDKVGIAFAASVINAVILTSLLSAANSGVFTTSRMLYSLSQHGQAPQFLGKIHHRSKLPLNALFTTFVFIAIVTLYANYNPKSVIGLLNIIGALVTFVWGSSLIAQIRMRRAIKKQNKNIDQLLAYKAPFFPVGPIIVIAILLFLIFGSSAEAIVHFEVSKLLQSFLPIIVLIVVYFVHKAINKTKVIPLEEIDLSEHESYRES
>CP009676.1|AKS69360.1|1546254_1547274_-|hypothetical-protein
MIIMNNMIWEIKSTLIPKTEMNIGMYTSIYNEFETKEEDILNIICDYFQKRHSNKDEVSIYERMNQEQLPYTLYQCYMLSHEEINKEHTLSANALITKKLNRLLSEQYERESYLNSINVLLEDLLNLVKSDLPLKIKRFDIKSFIKNIEFAYDLDHEYSRLIVRLESLIPLIVEELNYQSNNKTLLIYCYPESNLSPKEQIRFRNILESLGVPIIVLTGSKHFIAHDLAHMNYIRNEKQLLTAEFINHLVWDAPLNFEKHEIKRSLEKIIQLYQEVIELTPKISNYNLADIIVFEPIDIYVVIRYLKHANQDFVLDIHYDNLPIAVAKYIKMYDLKFNK
>CP009676.1|AKS69361.1|1547277_1547586_-|CRISPR-associated-protein-Cas2
MRVMIMFDLPVETKKQRRIYSKFRKRLLENGFLMMQYSIYIKSVANKDAADFSVLQVKQFLPQDGHVRSLIITEKQYEKMQILLGKEDQNIALLGDNRTIIF
>CP009676.1|AKS69362.1|1547590_1548493_-|CRISPR-associated-protein-Cas1
MSWRIVYASDVTKLSLSLNSLKIAKGDQEIKVPLSDIFAVVIEDLTVTVTVRLLVELSDYNILVIFCNQKHLPECVLQPISGHFSQYAQMKAQLSWDELSKKELWKQIVKQKILNQMTCMEHNNIDKARIRKMHELRNVVQLKDEHNIEGQAAKYYFNSFFEEFRRGDHNSLENAVLNYGYTILNAAIARTIVAKGLIPALGIHHIGGRNHFNLASDFIEPFRPLVDLFLFKHPPEDFLTKAYRLKLVNLLHARVLIDGKMQTVIRAIEIMIQSIIDYFREGQKQLLKFPDIKQFTFYEL
>CP009676.1|AKS69363.1|1548492_1551669_-|CRISPR-associated-protein-Cas9
MKNSYILGLDVGIASVGYGLIHSDSKSVIDAGVRLFPEANVENNEGRRAKRGSRRLKRRRIHRLDRVKNLLAQYHLIIDDKIPKSTNPYVIRVKGLSSPLSKSELVIALLHLAKRRGIHNVNVVMDENESTNELSTKEQLKENAKQLENRYVCELQLDRLNEQYKVRGERNRFKTEDFVREARQILTTQQKYHDIDEHFIEQYTHLLETRREYYEGPGKGSQYGWDGDLKQWYEMLMGRCTYFPEELRSVKYAYTADLFNALNDLNNLVIARDENEKLEYFEKYHIIENVFKQKKTPTLKQIAKEIDVKESDIKGYRITKNGKPQFTSFKLYHDLNKIFLDKKNLENIELLDEIAFILTLYQDPLSIKEALDQLQTLLTESEKEAIAHLNGYTGTHRLSLKCLHLLIDEMWQTSRNQMEVFTALNLKPQKYQLSKQKQIPKNIVEAFILSPVVKRSFIQSIEIVNTIIKKYGLPEEIIIELAREKNSEDRRKFLNRIQKENENTRKQVEEVIREYGNRNAKGLVEKIKLHQMQEGKCLYSLQNIPLDDLLRNPSHYEIDHIIPRSVSFDNSFNNKVLVKQEENSKKGNRTPYQYLNSNESALSYVQFKQHILNLSKSKERISKKKREYLLEERDINKFEVQKEFINRNLVDTRYATRELVQLLKSYFSANDLDVKVKTINGSFTNYLRKAWKFDKSRNKGFKHHAEDALIIANVSYLFKQSKELKEANAILENNNLSLNRNKDSKNLLTEQDYRKMFEIPKQVQDIKDYKDFKYSHRVDKKPNRQLINDSLYSTREINENHYIVQTVKDIYAKDNTKIKDLFLKTPEKLLMYKHDPQTFEKLMLVIKQYGEEKNPFAKYYEENGEYLTKYAKNEKGPTIKRLKYIGKKVGTHLDISRNFSNAKRKVVQLSIKPFRFDVFHSKAGYHMLTLTYMDIKKKEKHYQILKNEYQALKERYKVPSDAQFIGSFYYNDLISINDELFRVIGVNNSTRNIVELNMVDINYKDYCDLMGIKKTPRIFKTIAKKTEKIEKYSTDILGNQFKVKPSKSPQLIFKRGVL
>CP009676.1|AKS69364.1|1552233_1553607_-|amino-acid-permease
MKKLGFWSIVLLAINSIIGSGIFLSPGAVISIAGSYTPYVYILAAIFASILAVTFAAATKYVNKSGAAYAYATAAFGDNIGFYVGITRFIAACIAWGVMSTAVVKTVITIFGGDNTNTTLITIGFLILMVTLLLINITGNKLFEIINNLSTIGKLLALVTTIVAGIVVIVTTGEVRFSEVTHIVDTSKIDTTTFVLAIVAAFYAFTGFESVASGSEDMKNPEKNLPRAIPLAILSIAAVYLGIILVTMALNPQALIETKQVVSLVAVFHSPIIQNIILYGALISMFGINVAASFSTPRIIEAIANQQQISPWFKKRTKYDFPFNAFIVTFLIAIIIPMAFQYNMTSIIVLSSISRFIQFLVVPIGVIVFYYNKNKGTVLENVKKNVFTDVILPTISFLFTIILLVKFNWKGQFSIVEGQHTTLNYFAITAMVIGYIVLPAILFIVNKMRHQQSDIKE
>CP009676.1|AKS69365.1|1553609_1554344_-|glutamine-amidotransferase
MYMVAIIGITANILRDKDGMFPGYERCYINQDYVYSVTKHAGVPVVLPIHSDKNAIVKQVEQLDGLILTGGYDVSPHLYGEDPRNLIGETLLKRDSFEYTVLEQAKKRGIPILGICRGAQLINVYHGGTLYQDVSYRERETLRHWQGVNPTEKTHRIQILEQCHLARVFEEREIFVNSFHHQLIKDIAPDFKGTARSSDGVIECIEAQNYPYLVGVQWHPEMLWREEAMDKLFIDFIKNAKESG
>CP009676.1|AKS69366.1|1554618_1555128_-|thermonuclease
MRKFTSGLLIVVVAIFVLTLQYVNGQGPFKTTEGSTKDDSYIVTRVIDGDTIIVNKDGKEERVRMIGVDTPETVKPNTPVQPYGKEASDFTKKHLTGKRVTLEYDRAPKDRYGRTLAYVWVGDKMFNVRLAKEGLARAKFYSPNYKYRPQIEQAQKEAQKKKLNIWSEA
>CP009676.1|AKS69367.1|1555263_1555470_+|membrane-protein
MKTFKNNYLSLVVIIIAILIGFFLQHKFNLPLFAGAFIGVFLGMLGGFITQILMPKVQNHDADQKHRQ
>CP009676.1|AKS69368.1|1555814_1556033_+|hypothetical-protein
MPIVLFMLSFLASNALLILFITISLNNQIDFEFMIDIQKIKHLEKYNRLFFIMGIVLLIFSMYMLLQFLQQL
>CP009676.1|AKS69369.1|1556661_1556949_+|hypothetical-protein
MGELNKNELKQLEKRINHRFDDLERHLHDLPMHLEDKMKLIFQIEKEILRGERIKDRDKIINRIAVKLTVIGTILSTIIALFTFFWGYKEKNSIN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

Crispr_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP009676_1	1.9\|1545553\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545553-1545582	30	CP009676.1	2019993-2020022	0	1.0
CP009676_1	1.12\|1545751\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545751-1545780	30	CP009676.1	2032867-2032896	0	1.0
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	CP009676.1	2047070-2047099	0	1.0
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	CP009676.1	2036492-2036521	0	1.0
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	CP009676.1	2010031-2010060	1	0.967
CP009676_1	1.13\|1545817\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545817-1545846	30	CP009676.1	2017992-2018021	1	0.967

1. spacer 1.9|1545553|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2019993-2020022, mismatch: 0, identity: 1.0

atcagttgcctcctttgttatcgtaaaaca	CRISPR spacer
atcagttgcctcctttgttatcgtaaaaca	Protospacer
******************************

2. spacer 1.12|1545751|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2032867-2032896, mismatch: 0, identity: 1.0

tagtttttttatggtctgtaatcaacctta	CRISPR spacer
tagtttttttatggtctgtaatcaacctta	Protospacer
******************************

3. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2047070-2047099, mismatch: 0, identity: 1.0

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaacaaattcaacgaaat	Protospacer
******************************

4. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2036492-2036521, mismatch: 0, identity: 1.0

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
gtgtaactcctacttgattcgcaacactca	Protospacer
******************************

5. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2010031-2010060, mismatch: 1, identity: 0.967

accagccaccaggttggaacagatacccta	CRISPR spacer
accaaccaccaggttggaacagatacccta	Protospacer
****.*************************

6. spacer 1.13|1545817|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2017992-2018021, mismatch: 1, identity: 0.967

gtggaattgtagcaatcttattaggtcttg	CRISPR spacer
gtgcaattgtagcaatcttattaggtcttg	Protospacer
*** **************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1058250 : 1081837

Staphylococcus_phage(90.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS68911.1\|1058250_1058568_-	membrane protein	A0A2H4JDX0	uncultured_Caudovirales_phage	9.6e-16	46.5
AKS68912.1\|1058861_1060256_+	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.0e-130	52.1
AKS68913.1\|1060252_1061242_+	O-succinylbenzoate-CoA synthase	A0A2H4PQM0	Staphylococcus_phage	6.0e-80	45.7
AKS68914.1\|1061217_1061469_-	membrane protein	A0A2H4PQM5	Staphylococcus_phage	3.5e-29	69.9
AKS68915.1\|1061526_1061997_+	nucleoside triphosphatase	A0A2H4PQM4	Staphylococcus_phage	8.9e-34	47.8
AKS68916.1\|1061977_1062748_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	1.8e-84	62.7
AKS68917.1\|1062878_1064462_-	phosphoenolpyruvate carboxykinase [ATP]	A0A2H4PQN1	Staphylococcus_phage	1.2e-239	75.4
AKS68918.1\|1065009_1066209_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	3.1e-179	80.8
AKS68919.1\|1066298_1067210_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	2.1e-87	67.9
AKS68920.1\|1067797_1068634_+	glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	1.6e-105	65.3
AKS68921.1\|1068773_1069130_-	hypothetical protein	NA	NA	NA	NA
AKS68922.1\|1069126_1069492_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	2.2e-32	59.3
AKS68923.1\|1069528_1069831_-	membrane protein	NA	NA	NA	NA
AKS68924.1\|1069986_1070697_+	transaldolase	M1PR54	Cyanophage	5.0e-20	37.0
AKS68925.1\|1070944_1071394_+	hypothetical protein	NA	NA	NA	NA
AKS68926.1\|1071396_1071825_-	hypothetical protein	NA	NA	NA	NA
AKS68927.1\|1071827_1072316_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.1e-21	43.8
AKS68928.1\|1072520_1072742_+	hypothetical protein	NA	NA	NA	NA
AKS68929.1\|1072898_1073762_+	autolysin	A0A1W6JQU5	Staphylococcus_phage	9.3e-37	44.4
AKS70242.1\|1074083_1074971_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
AKS68930.1\|1075196_1076756_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	3.4e-13	60.3
AKS68931.1\|1077295_1078342_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A2H4PQS8	Staphylococcus_phage	8.7e-114	58.1
AKS68932.1\|1078346_1078976_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	1.8e-61	57.1
AKS68933.1\|1078990_1080172_+	GTP cyclohydrolase	A0A2H4PQS2	Staphylococcus_phage	1.7e-150	65.4
AKS68934.1\|1080190_1080649_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-51	66.0
AKS68935.1\|1080853_1081837_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-121	66.9

DBSCAN-SWA_2

1085656 : 1093043

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS68940.1\|1085656_1086217_-	rRNA methyltransferase	A0A2H4PQV0	Staphylococcus_phage	7.8e-61	61.1
AKS68941.1\|1086213_1087167_-	hypothetical protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-63	78.5
AKS68942.1\|1087311_1088493_+	multidrug MFS transporter	A0A2H4PQR6	Staphylococcus_phage	8.3e-153	69.0
AKS68943.1\|1088868_1091280_+\|tRNA	leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	80.8
AKS68944.1\|1091298_1091610_+	sulfurtransferase	A0A2H4PQR9	Staphylococcus_phage	1.1e-32	64.1
AKS68945.1\|1091786_1093043_-	hypothetical protein	A0A2H4PQX1	Staphylococcus_phage	3.5e-32	69.5

DBSCAN-SWA_3

1207390 : 1218724

uncultured_Mediterranean_phage(57.14%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69039.1\|1207390_1208389_+	ATP-dependent DNA helicase RuvB	E3T4M7	Cafeteria_roenbergensis_virus	2.6e-06	27.1
AKS69040.1\|1208406_1209432_+\|tRNA	S-adenosylmethionine tRNA ribosyltransferase	NA	NA	NA	NA
AKS69041.1\|1209449_1210589_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-87	45.5
AKS69042.1\|1210605_1210869_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.8e-07	45.7
AKS69043.1\|1211007_1213287_+	preprotein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	6.1e-27	31.6
AKS70249.1\|1213395_1215678_+	single-stranded-DNA exonuclease	A7KV88	Bacillus_phage	2.4e-68	29.0
AKS69044.1\|1215691_1216210_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.2e-26	48.0
AKS69045.1\|1216534_1218724_+	GTP pyrophosphokinase	A0A1B1IUF0	uncultured_Mediterranean_phage	7.7e-11	36.5

DBSCAN-SWA_4

1351084 : 1360079

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69177.1\|1351084_1351813_+	segregation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.8e-10	30.6
AKS69178.1\|1351802_1352345_+	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	3.9e-09	32.7
AKS69179.1\|1352344_1353088_+	pseudouridine synthase	NA	NA	NA	NA
AKS70256.1\|1353382_1354108_+	transcriptional regulator	W8CYM9	Bacillus_phage	1.6e-45	40.9
AKS69180.1\|1354091_1355834_+	histidine kinase	Q8QKV4	Ectocarpus_siliculosus_virus	4.4e-09	25.0
AKS69181.1\|1356545_1357091_+	riboflavin transporter RibU	NA	NA	NA	NA
AKS69182.1\|1357412_1357661_-	ferredoxin	A0A127AYY7	Bacillus_phage	2.3e-17	53.3
AKS69183.1\|1357765_1358710_+	hypothetical protein	NA	NA	NA	NA
AKS69184.1\|1358702_1360079_+	ATP-dependent DNA helicase RecQ	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	3.9e-53	33.2

DBSCAN-SWA_5

1440739 : 1481610

Staphylococcus_phage(82.0%)

terminase,capsid,holin,tail,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69261.1\|1440739_1442137_-	hypothetical protein	A0A2H4JD28	uncultured_Caudovirales_phage	3.3e-132	51.4
AKS69262.1\|1442195_1442672_-	hypothetical protein	A0A2H4J2Y4	uncultured_Caudovirales_phage	4.7e-22	92.7
AKS69263.1\|1442724_1443351_-	transcriptional regulator	A0A1J0MG99	Staphylococcus_phage	5.2e-98	88.9
AKS69264.1\|1443501_1443726_+	XRE family transcriptional regulator	Q4ZCB2	Staphylococcus_virus	2.3e-32	91.7
AKS69265.1\|1444032_1444308_+	hypothetical protein	A1KWZ5	Staphylococcus_virus	6.6e-05	34.4
AKS69266.1\|1444668_1444884_+	hypothetical protein	NA	NA	NA	NA
AKS69267.1\|1444876_1445425_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.9e-56	61.5
AKS69268.1\|1445427_1446051_+	single-stranded DNA-binding protein	Q4ZC23	Staphylococcus_virus	1.1e-82	76.8
AKS69269.1\|1446050_1446464_+	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	2.0e-58	84.1
AKS69270.1\|1446474_1447026_+	HNH endonuclease	A0A2H4PQR4	Staphylococcus_phage	1.5e-85	83.6
AKS69271.1\|1447026_1447698_+	phi PV83 orf 19-like protein	A0A1J0MFX6	Staphylococcus_phage	3.9e-115	90.5
AKS69272.1\|1447694_1448399_+	hypothetical protein	A0A1W6JQ30	Staphylococcus_phage	9.6e-40	74.5
AKS69273.1\|1448402_1448756_+	hypothetical protein	A0A1J0MFD5	Staphylococcus_phage	5.5e-28	49.6
AKS69274.1\|1448748_1449987_+	damage-inducible protein	A0A1J0MFK7	Staphylococcus_phage	8.8e-198	82.6
AKS69275.1\|1449983_1450202_+	hypothetical protein	A0A1J0MFB5	Staphylococcus_phage	1.1e-23	75.0
AKS69276.1\|1450188_1450602_+	Holliday junction resolvase	A0A223LGP3	Staphylococcus_phage	1.8e-67	92.4
AKS69277.1\|1450606_1450906_+	hypothetical protein	A0A223LH51	Staphylococcus_phage	4.3e-34	72.7
AKS69278.1\|1450898_1451081_+	hypothetical protein	Q4ZD43	Staphylococcus_phage	1.0e-22	86.0
AKS69279.1\|1451526_1451715_+	hypothetical protein	A0A223LFJ6	Staphylococcus_phage	6.1e-18	77.6
AKS69280.1\|1451711_1451933_+	hypothetical protein	A0A2H4JCB3	uncultured_Caudovirales_phage	2.1e-09	44.9
AKS70259.1\|1451952_1452198_+	hypothetical protein	A0A1J0MG61	Staphylococcus_phage	2.2e-23	72.3
AKS69281.1\|1452197_1452593_+	hypothetical protein	Q4ZC09	Staphylococcus_virus	1.8e-24	47.3
AKS69282.1\|1453016_1453352_+	hypothetical protein	A0A249Y1R7	Staphylococcus_phage	1.2e-05	31.9
AKS69283.1\|1453885_1454035_+	phage-like protein	Q4ZD32	Staphylococcus_phage	4.4e-11	80.9
AKS69284.1\|1454031_1454202_+	transcriptional regulator	A0A1J0MFF2	Staphylococcus_phage	1.3e-11	72.7
AKS69285.1\|1454201_1454429_+	hypothetical protein	Q4ZD29	Staphylococcus_phage	1.3e-25	80.0
AKS69286.1\|1454567_1454990_+	transcriptional regulator	A0A1J0MFW0	Staphylococcus_phage	1.2e-61	84.3
AKS69287.1\|1455220_1455589_+	hypothetical protein	A0A1J0MFN7	Staphylococcus_phage	1.5e-39	66.7
AKS69288.1\|1455579_1455960_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	6.1e-57	83.1
AKS69289.1\|1456030_1456501_+\|terminase	terminase	A0A1J0MG04	Staphylococcus_phage	7.0e-71	87.8
AKS69290.1\|1456500_1458204_+\|terminase	terminase	A0A1J0MGD9	Staphylococcus_phage	1.2e-298	87.8
AKS69291.1\|1458215_1458413_+	membrane protein	A0A1J0MFN2	Staphylococcus_phage	3.4e-19	83.1
AKS69292.1\|1458418_1459693_+\|portal	portal protein	A0A1J0MFU3	Staphylococcus_phage	2.7e-226	92.7
AKS69293.1\|1459667_1460240_+	peptidase U35	A0A1J0MFL1	Staphylococcus_phage	6.3e-98	92.1
AKS69294.1\|1460325_1461555_+\|capsid	capsid protein	A0A1J0MFW8	Staphylococcus_phage	5.1e-198	89.5
AKS69295.1\|1461737_1462037_+\|head,tail	phage head-tail adapter protein	A0A1J0MFU4	Staphylococcus_phage	3.8e-38	78.5
AKS69296.1\|1462008_1462341_+\|head,tail	head-tail adaptor protein	A0A1J0MG09	Staphylococcus_phage	2.3e-44	71.8
AKS69297.1\|1462340_1462718_+	HK97 gp10 family phage protein	A0A1J0MGE3	Staphylococcus_phage	1.0e-43	69.7
AKS69298.1\|1462714_1463077_+	hypothetical protein	A0A1J0MFP0	Staphylococcus_phage	3.0e-45	70.0
AKS69299.1\|1463088_1464030_+	hypothetical protein	A0A1J0MFV0	Staphylococcus_phage	1.8e-142	81.5
AKS69300.1\|1464096_1464543_+	hypothetical protein	A0A1J0MFL9	Staphylococcus_phage	2.5e-38	54.7
AKS69301.1\|1464743_1469897_+	hypothetical protein	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	58.0
AKS69302.1\|1469896_1471387_+\|tail	phage tail protein	Q4ZD64	Staphylococcus_phage	1.2e-241	82.2
AKS69303.1\|1471402_1475962_+	hypothetical protein	Q4ZD63	Staphylococcus_phage	0.0e+00	51.8
AKS69304.1\|1476173_1476455_+	hypothetical protein	A0A1J0MFP4	Staphylococcus_phage	2.0e-36	83.5
AKS69305.1\|1476477_1476771_+	hypothetical protein	A0A1W6JPB3	Staphylococcus_phage	1.6e-28	69.5
AKS69306.1\|1476907_1477201_+\|holin	holin	A0A2I6PET6	Staphylococcus_phage	4.3e-26	62.8
AKS69307.1\|1477215_1478643_+	amidase	W5RAM3	Staphylococcus_phage	3.4e-169	62.0
AKS69308.1\|1478826_1479600_+	hypothetical protein	Q4ZAU0	Staphylococcus_virus	8.0e-48	40.6
AKS69309.1\|1479605_1480334_+	hypothetical protein	E0Y3N3	Staphylococcus_virus	3.4e-40	39.2
AKS69310.1\|1480571_1481045_+	hypothetical protein	NA	NA	NA	NA
AKS70260.1\|1481214_1481610_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.5e-21	44.1

DBSCAN-SWA_6

1590474 : 1648121

Streptococcus_phage(15.38%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69394.1\|1590474_1592022_-\|tRNA	(dimethylallyl)adenosine tRNA methylthiotransferase	NA	NA	NA	NA
AKS69395.1\|1592121_1592424_-	hypothetical protein	NA	NA	NA	NA
AKS69396.1\|1592635_1593502_-	2-oxoacid ferredoxin oxidoreductase	NA	NA	NA	NA
AKS69397.1\|1593502_1595263_-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA
AKS69398.1\|1595412_1596207_-	metallophosphoesterase	NA	NA	NA	NA
AKS69399.1\|1596536_1598699_-	cadmium transporter	E4ZFI9	Streptococcus_phage	1.7e-196	52.4
AKS69400.1\|1598682_1599066_-	ArsR family transcriptional regulator	E4ZFI8	Streptococcus_phage	4.0e-32	60.2
AKS69401.1\|1599264_1599483_+	hypothetical protein	NA	NA	NA	NA
AKS69402.1\|1599604_1601164_-	ribonuclease	NA	NA	NA	NA
AKS69403.1\|1601455_1602499_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.8e-125	65.2
AKS69404.1\|1602664_1603813_-	damage-inducible protein CinA	NA	NA	NA	NA
AKS69405.1\|1604059_1604647_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AKS69406.1\|1604687_1605083_-	transcriptional regulator	NA	NA	NA	NA
AKS69407.1\|1605103_1605949_-	hypothetical protein	NA	NA	NA	NA
AKS69408.1\|1606003_1606708_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AKS69409.1\|1606704_1607994_-\|protease	zinc protease	G3MBJ8	Bacillus_virus	1.2e-16	28.2
AKS69410.1\|1607995_1609261_-\|protease	zinc protease	NA	NA	NA	NA
AKS69411.1\|1609297_1610014_-	transcriptional regulator	NA	NA	NA	NA
AKS69412.1\|1610017_1612381_-	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	2.4e-87	49.3
AKS69413.1\|1612517_1614191_-	Zn-dependent hydrolase	NA	NA	NA	NA
AKS69414.1\|1614300_1614570_+	hypothetical protein	NA	NA	NA	NA
AKS69415.1\|1614561_1616661_-	polynucleotide phosphorylase	NA	NA	NA	NA
AKS69416.1\|1616811_1617081_-	30S ribosomal protein S15	NA	NA	NA	NA
AKS69417.1\|1617183_1618155_-	riboflavin biosynthesis protein RibF	A0A1V0SJE1	Klosneuvirus	4.1e-09	32.6
AKS69418.1\|1618170_1619088_-\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
AKS69419.1\|1619168_1619513_-	ribosome-binding factor A	NA	NA	NA	NA
AKS69420.1\|1620520_1621270_-	hypothetical protein	NA	NA	NA	NA
AKS69421.1\|1622282_1623512_-	hypothetical protein	NA	NA	NA	NA
AKS69422.1\|1623501_1623942_-	hypothetical protein	NA	NA	NA	NA
AKS69423.1\|1625186_1625369_-	hypothetical protein	NA	NA	NA	NA
AKS69424.1\|1625514_1625811_-	hypothetical protein	A0A1Q1PVY9	Staphylococcus_phage	4.0e-08	42.7
AKS69425.1\|1625823_1626018_-	hypothetical protein	A0A0C5AEB1	Paenibacillus_phage	1.5e-16	66.7
AKS69426.1\|1626010_1626193_-\|transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	1.1e-13	58.6
AKS69427.1\|1626400_1626592_+	hypothetical protein	NA	NA	NA	NA
AKS69428.1\|1626800_1628903_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	3.2e-22	25.8
AKS69429.1\|1628919_1629225_-	50S ribosomal protein L7	NA	NA	NA	NA
AKS69430.1\|1629221_1629509_-	DNA-binding protein	NA	NA	NA	NA
AKS69431.1\|1629521_1630667_-	transcription elongation factor NusA	NA	NA	NA	NA
AKS69432.1\|1630685_1631153_-	ribosome maturation protein RimP	NA	NA	NA	NA
AKS69433.1\|1631276_1635584_-	DNA polymerase III PolC	A0A0A7RWA3	Clostridium_phage	1.2e-20	36.1
AKS69434.1\|1635793_1637500_-\|tRNA	prolyl-tRNA synthetase	NA	NA	NA	NA
AKS69435.1\|1637525_1638806_-\|protease	zinc metalloprotease	NA	NA	NA	NA
AKS69436.1\|1638811_1639942_-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	NA	NA	NA	NA
AKS69437.1\|1639961_1640744_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AKS69438.1\|1640758_1641520_-	UDP pyrophosphate synthase	R9W0U9	Flavobacterium_phage	3.7e-21	38.2
AKS69439.1\|1641850_1642405_-	ribosome recycling factor	NA	NA	NA	NA
AKS69440.1\|1642423_1643146_-	uridylate kinase	NA	NA	NA	NA
AKS69441.1\|1643296_1644175_-	elongation factor Ts	NA	NA	NA	NA
AKS69442.1\|1644398_1645196_-	30S ribosomal protein S2	NA	NA	NA	NA
AKS69443.1\|1645360_1646134_-	transcriptional repressor CodY	NA	NA	NA	NA
AKS69444.1\|1646153_1647563_-\|protease	ATP-dependent protease	A0A1B2IEP8	Erwinia_phage	9.9e-28	24.4
AKS69445.1\|1647578_1648121_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_7

1830083 : 1838503

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69598.1\|1830083_1830650_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-26	37.4
AKS69599.1\|1830646_1831681_-	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	7.7e-62	41.5
AKS69600.1\|1831684_1833106_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.3e-50	33.6
AKS69601.1\|1833084_1835274_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	4.0e-137	39.5
AKS69602.1\|1835266_1835938_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AKS69603.1\|1835939_1836200_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AKS69604.1\|1836202_1836904_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.3e-48	42.1
AKS69605.1\|1836900_1838034_-	phosphoribosylaminoimidazole carboxylase	NA	NA	NA	NA
AKS69606.1\|1838020_1838503_-	phosphoribosylaminoimidazole carboxylase	A0A2P0VNU7	Tetraselmis_virus	1.0e-21	44.7

DBSCAN-SWA_8

2007392 : 2054126

Staphylococcus_phage(53.7%)

protease,terminase,integrase,capsid,tail,head,portal

attL 2029393:2029407|attR 2051424:2051438

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69744.1\|2007392_2008079_-\|protease	protease	NA	NA	NA	NA
AKS70277.1\|2008559_2008946_-	hypothetical protein	NA	NA	NA	NA
AKS69745.1\|2009124_2009598_-	hypothetical protein	NA	NA	NA	NA
AKS69746.1\|2009881_2011339_-	autolysin	Q4ZCC3	Staphylococcus_virus	2.0e-209	68.2
AKS69747.1\|2011791_2012187_-	phi ETA orf 63-like protein	A0A0H4IPB8	Staphylococcus_phage	2.2e-46	66.9
AKS70278.1\|2012191_2013496_-\|tail	tail protein	Q4ZB96	Staphylococcus_virus	9.8e-131	64.2
AKS69748.1\|2013508_2015398_-	cell wall hydrolase	Q4ZC50	Staphylococcus_virus	3.2e-231	62.7
AKS69749.1\|2015531_2015906_-	hypothetical protein	A0A1J0MG33	Staphylococcus_phage	6.6e-40	75.0
AKS69750.1\|2016070_2016445_-	hypothetical protein	A0A2H4J2S0	uncultured_Caudovirales_phage	4.1e-05	38.8
AKS69751.1\|2016450_2018037_-	hypothetical protein	D7RWE2	Brochothrix_phage	7.0e-30	37.2
AKS69752.1\|2018038_2019994_-	hypothetical protein	A0A0A0RNC0	Bacillus_phage	2.8e-36	25.9
AKS69753.1\|2019993_2021859_-	peptidase	Q4ZC57	Staphylococcus_virus	1.4e-252	69.6
AKS69754.1\|2021871_2022810_-\|tail	phage tail protein	Q4ZC58	Staphylococcus_virus	9.5e-120	68.6
AKS69755.1\|2022828_2025858_-\|terminase	terminase	M9NRJ5	Staphylococcus_phage	1.5e-195	55.4
AKS69756.1\|2025871_2026153_-	hypothetical protein	A0A1W6JQT4	Staphylococcus_phage	2.6e-20	56.0
AKS69757.1\|2026215_2026719_-	hypothetical protein	Q4ZC62	Staphylococcus_virus	1.4e-45	54.5
AKS69758.1\|2026788_2027322_-\|tail	tail protein	A0A1W6JQQ8	Staphylococcus_phage	1.0e-78	84.3
AKS69759.1\|2027325_2027748_-	phage protein	Q4ZBQ9	Staphylococcus_phage	2.8e-55	77.9
AKS69760.1\|2027759_2028173_-	HK97 gp10 family phage protein	Q4ZCE4	Staphylococcus_virus	1.6e-63	80.9
AKS69761.1\|2028159_2028495_-\|head,tail	phage head-tail adapter protein	A0A2H4JBX6	uncultured_Caudovirales_phage	4.7e-37	67.3
AKS69762.1\|2028496_2028793_-\|head,tail	phage head-tail adapter protein	Q4ZCE6	Staphylococcus_virus	9.2e-37	72.4
AKS70279.1\|2028792_2029071_-	Rho termination protein	Q4ZCE7	Staphylococcus_virus	2.4e-26	60.9
AKS69763.1\|2029093_2030026_-	sugar-binding protein	A0A1W6JPD7	Staphylococcus_phage	1.6e-138	82.1
2029393:2029407	attL	NA	NA	NA	NA
AKS69764.1\|2030037_2030568_-	hypothetical protein	Q4ZBR6	Staphylococcus_phage	5.9e-34	78.5
AKS69765.1\|2030658_2031603_-\|capsid	phage capsid protein	Q4ZC73	Staphylococcus_virus	5.6e-136	74.5
AKS69766.1\|2031571_2032990_-\|portal	phage portal protein	Q4ZC74	Staphylococcus_virus	2.0e-246	85.4
AKS69767.1\|2032994_2034260_-\|terminase	terminase	Q4ZC75	Staphylococcus_virus	6.2e-231	91.4
AKS69768.1\|2034243_2034732_-\|terminase	terminase	Q4ZAI5	Staphylococcus_virus	4.1e-66	76.5
AKS69769.1\|2034993_2035428_-	transcriptional regulator	A0A1J0MFW0	Staphylococcus_phage	2.3e-60	83.6
AKS69770.1\|2035603_2035831_-	hypothetical protein	Q4ZD29	Staphylococcus_phage	2.2e-22	74.6
AKS69771.1\|2035821_2036001_-	transcriptional regulator	A0A1J0MFF2	Staphylococcus_phage	1.1e-11	72.7
AKS69772.1\|2035997_2036147_-	phage-like protein	Q4ZD32	Staphylococcus_phage	4.4e-11	80.9
AKS69773.1\|2036210_2036747_-	dUTPase	R4IG63	Staphylococcus_phage	4.8e-76	78.7
AKS69774.1\|2036761_2037097_-	hypothetical protein	A0A249Y1R7	Staphylococcus_phage	3.6e-05	31.9
AKS69775.1\|2037519_2037915_-	hypothetical protein	Q4ZC09	Staphylococcus_virus	3.2e-24	45.0
AKS70280.1\|2037914_2038160_-	hypothetical protein	A0A1J0MG61	Staphylococcus_phage	2.2e-23	72.3
AKS69776.1\|2038179_2038401_-	hypothetical protein	A0A2H4JCB3	uncultured_Caudovirales_phage	9.4e-10	44.9
AKS69777.1\|2038397_2039075_-	hypothetical protein	A0A2H4J9K3	uncultured_Caudovirales_phage	3.0e-75	59.9
AKS70281.1\|2039077_2039326_-	phage protein	A0A2H4J3I9	uncultured_Caudovirales_phage	6.3e-31	81.6
AKS69778.1\|2039679_2039982_-	hypothetical protein	A0A223LH51	Staphylococcus_phage	3.4e-34	72.0
AKS69779.1\|2039986_2040400_-	Holliday junction resolvase	A0A223LGP3	Staphylococcus_phage	1.4e-67	92.4
AKS69780.1\|2040564_2041341_-	DNA replication protein DnaC	Q4ZC96	Staphylococcus_virus	1.3e-106	74.4
AKS69781.1\|2041343_2042111_-	replication protein	W5R8N2	Staphylococcus_phage	8.2e-77	74.2
AKS69782.1\|2042935_2043610_-	phi PV83 orf 19-like protein	A0A1J0MFX6	Staphylococcus_phage	3.9e-115	89.3
AKS69783.1\|2043780_2044203_-	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	5.5e-67	89.7
AKS69784.1\|2044202_2044871_-	single-stranded DNA-binding protein	A0A1J0MF78	Staphylococcus_phage	1.6e-113	93.7
AKS69785.1\|2044874_2045423_-	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.1e-56	61.5
AKS69786.1\|2045415_2045670_-	hypothetical protein	A0A0H3U2S3	Staphylococcus_phage	9.1e-09	40.5
AKS69787.1\|2045865_2046126_-	hypothetical protein	A0A223LGR0	Staphylococcus_phage	9.0e-12	40.0
AKS69788.1\|2046371_2046596_-	hypothetical protein	A0A223LG98	Staphylococcus_phage	4.8e-30	89.2
AKS69789.1\|2046609_2047365_-	Rha family transcriptional regulator	I6TJS0	Staphylococcus_virus	1.6e-117	86.3
AKS69790.1\|2047509_2047755_-	XRE family transcriptional regulator	A0A2I6PED6	Staphylococcus_phage	1.1e-30	84.4
AKS69791.1\|2047918_2048242_+	Cro/Cl family transcriptional regulator	A0A141VTQ4	Staphylococcus_phage	2.7e-42	82.2
AKS69792.1\|2048254_2048713_+	toxin	A0A2H4JE34	uncultured_Caudovirales_phage	1.9e-52	61.8
AKS69793.1\|2048731_2049226_+	hypothetical protein	Q4ZBN8	Staphylococcus_phage	4.5e-36	48.1
AKS69794.1\|2049227_2049770_+	hypothetical protein	NA	NA	NA	NA
AKS69795.1\|2049833_2050883_+\|integrase	integrase	A0A1J0MF14	Staphylococcus_phage	1.5e-193	96.0
AKS69796.1\|2050950_2052348_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
2051424:2051438	attR	NA	NA	NA	NA
AKS69797.1\|2052445_2052895_-	nitrogen fixation protein NifU	NA	NA	NA	NA
AKS70282.1\|2052884_2054126_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.6e-117	48.0

DBSCAN-SWA_9

2129578 : 2139288

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69863.1\|2129578_2131684_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	87.0
AKS69864.1\|2131646_2132045_-	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	1.8e-43	63.6
AKS69865.1\|2132668_2133556_+	membrane protein	NA	NA	NA	NA
AKS69866.1\|2133571_2134072_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	4.1e-53	71.7
AKS69867.1\|2134479_2135985_+	peptide transporter	A0A0P0IY73	Acinetobacter_phage	1.6e-68	34.4
AKS69868.1\|2136666_2138169_+	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	5.3e-64	33.8
AKS69869.1\|2138358_2139288_+	lipid kinase	A0A1V0SBJ0	Catovirus	5.9e-13	25.5

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP009676

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Anti-CRISPR protein detection

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Crispr-Cas detection and classification

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Self-targeting detection

Prophage detection