CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Signature genes	Self targeting spacer_number	MGE targeting spacer number	Prophage number	Anti-CRISPR protein number
CP009676	Staphylococcus schleiferi strain 5909-02, complete genome	1 CRISPR	WYL,DEDDh,cas3,DinG,cas2,cas1,cas9,csa3,TnsC,TnsB,casR	6	10	9	2

Results visualization

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Crispr-Cas detection and classification

Crispr_ID: CP009676_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas protein info

CRISPR-Cas info

CP009676_1

1544989-1546080

orTypeII

Consensus_repeat	Method
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CRISPRCasFinder
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CRT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	PILER-CR

16 spacers

cas2,cas1,cas9

The CRISPR arrays of CP009676_1

>merge|CP009676|1|1544989-1546080|CRISPRCasFinder,CRT,PILER-CR
AATAAGTATTCATTTAAAATTACAAAGTACTAAAACGGGCTACTAATCTTTTGAACTCTGCATAGTGTTTCATTTATACCTAAAATTACAGAGTACTAAAACACCAGCCACCAGGTTGGAACAGATACCCTAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGAATTCTTCTTCTGTAACAAATCCGCGCTGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTAGTGCCATTCATAATAGTTTCGAACCCAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTGATACGCATAATACAAATCCTTACCTAAAAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACATAGGCATACACCCGTAATCAAATTTGATAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGAAGAGATCTCAAGGTTTTTTAAAGATGAGGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTAGGATAACCTTGTTTCAAAGAATTATGTTTGTTTCATTTATACCTAAAATTACAGAGTACTAAAACATCAGTTGCCTCCTTTGTTATCGTAAAACAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTCTTTATCATGTTTAAAGTTGTAGAATACAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACCTAACAAATGTGAATATACGTCTAAAGTTGGTTTCATTTATACCTAAAATTACAGAGTACTAAAACTAGTTTTTTTATGGTCTGTAATCAACCTTAGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGTGGAATTGTAGCAATCTTATTAGGTCTTGGTTTCATTTATACCTAAAATTACAGAGTACTAAAACAATGGCTTACATTAACAAATTCAACGAAATGTTTCATTTATACCTAAAATTACAGAGTACTAAAACCCAACAACTAAATAGTACCATAGGTGTTTCGTTTCATTTATACCTAAAATTACAGAGTACTAAAACGTGTAACTCCTACTTGATTCGCAACACTCAGTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

>CP009676|1|1|1544989-1546080|CRISPRCasFinder
AATAAGTATTCATTTAAAATTACAAAGTACTAAAAC	GGGCTACTAATCTTTTGAACTCTGCATAGT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ACCAGCCACCAGGTTGGAACAGATACCCTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAATTCTTCTTCTGTAACAAATCCGCGCT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTGCCATTCATAATAGTTTCGAACCCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TGATACGCATAATACAAATCCTTACCTAAAA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATAGGCATACACCCGTAATCAAATTTGATA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAAGAGATCTCAAGGTTTTTTAAAGATGAG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGGATAACCTTGTTTCAAAGAATTATGTTT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATCAGTTGCCTCCTTTGTTATCGTAAAACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TCTTTATCATGTTTAAAGTTGTAGAATACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CTAACAAATGTGAATATACGTCTAAAGTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTTTTTTTATGGTCTGTAATCAACCTTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGGAATTGTAGCAATCTTATTAGGTCTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	AATGGCTTACATTAACAAATTCAACGAAAT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CCAACAACTAAATAGTACCATAGGTGTTTC
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGTAACTCCTACTTGATTCGCAACACTCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

>CP009676|1|1|1544989-1546080|CRT
AATAAGTATTCATTTAAAATTACAAAGTACTAAAAC	GGGCTACTAATCTTTTGAACTCTGCATAGT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ACCAGCCACCAGGTTGGAACAGATACCCTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAATTCTTCTTCTGTAACAAATCCGCGCT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTGCCATTCATAATAGTTTCGAACCCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TGATACGCATAATACAAATCCTTACCTAAAA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATAGGCATACACCCGTAATCAAATTTGATA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAAGAGATCTCAAGGTTTTTTAAAGATGAG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGGATAACCTTGTTTCAAAGAATTATGTTT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATCAGTTGCCTCCTTTGTTATCGTAAAACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TCTTTATCATGTTTAAAGTTGTAGAATACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CTAACAAATGTGAATATACGTCTAAAGTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTTTTTTTATGGTCTGTAATCAACCTTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGGAATTGTAGCAATCTTATTAGGTCTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	AATGGCTTACATTAACAAATTCAACGAAAT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CCAACAACTAAATAGTACCATAGGTGTTTC
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGTAACTCCTACTTGATTCGCAACACTCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

>CP009676|1|1|1545055-1546080|PILER-CR
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ACCAGCCACCAGGTTGGAACAGATACCCTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAATTCTTCTTCTGTAACAAATCCGCGCT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTGCCATTCATAATAGTTTCGAACCCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TGATACGCATAATACAAATCCTTACCTAAAA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATAGGCATACACCCGTAATCAAATTTGATA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GAAGAGATCTCAAGGTTTTTTAAAGATGAG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGGATAACCTTGTTTCAAAGAATTATGTTT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	ATCAGTTGCCTCCTTTGTTATCGTAAAACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TCTTTATCATGTTTAAAGTTGTAGAATACA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CTAACAAATGTGAATATACGTCTAAAGTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	TAGTTTTTTTATGGTCTGTAATCAACCTTA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGGAATTGTAGCAATCTTATTAGGTCTTG
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	AATGGCTTACATTAACAAATTCAACGAAAT
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	CCAACAACTAAATAGTACCATAGGTGTTTC
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	GTGTAACTCCTACTTGATTCGCAACACTCA
GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP009676.1\|AKS69357.1\|1542032_1542626_-\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69353.1\|1537178_1538099_-\|serine-kinase	unknown	unknown	gnl\|CDD\|234920
CP009676.1\|AKS69355.1\|1539165_1540449_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
CP009676.1\|AKS69358.1\|1543136_1543499_+\|regulator	unknown	unknown	gnl\|CDD\|130944
CP009676.1\|AKS69363.1\|1548492_1551669_-\|CRISPR-associated-protein-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
CP009676.1\|AKS69352.1\|1536037_1536844_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
CP009676.1\|AKS69369.1\|1556661_1556949_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69361.1\|1547277_1547586_-\|CRISPR-associated-protein-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP009676.1\|AKS69362.1\|1547590_1548493_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP009676.1\|AKS69354.1\|1538095_1539160_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
CP009676.1\|AKS69365.1\|1553609_1554344_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|224982
CP009676.1\|AKS69368.1\|1555814_1556033_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69351.1\|1535549_1535864_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69356.1\|1540640_1541993_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
CP009676.1\|AKS69360.1\|1546254_1547274_-\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69364.1\|1552233_1553607_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
CP009676.1\|AKS69359.1\|1543687_1544539_+\|hypothetical-protein	unknown	unknown	unknown
CP009676.1\|AKS69350.1\|1533863_1535318_+\|gamma-aminobutyrate-permease	unknown	unknown	gnl\|CDD\|223903
CP009676.1\|AKS69367.1\|1555263_1555470_+\|membrane-protein	unknown	unknown	unknown
CP009676.1\|AKS69366.1\|1554618_1555128_-\|thermonuclease	unknown	unknown	gnl\|CDD\|366169

Protein	Function ID	Function description	E-value
CP009676.1\|AKS69353.1\|1537178_1538099_-\|serine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	3.38596e-112
CP009676.1\|AKS69355.1\|1539165_1540449_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
CP009676.1\|AKS69350.1\|1533863_1535318_+\|gamma-aminobutyrate-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	0
CP009676.1\|AKS69363.1\|1548492_1551669_-\|CRISPR-associated-protein-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	1.04708e-118
CP009676.1\|AKS69352.1\|1536037_1536844_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.6503e-74
CP009676.1\|AKS69361.1\|1547277_1547586_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.07318e-26
CP009676.1\|AKS69362.1\|1547590_1548493_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.79641e-98
CP009676.1\|AKS69354.1\|1538095_1539160_-\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
CP009676.1\|AKS69365.1\|1553609_1554344_-\|glutamine-amidotransferase	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	2.53269e-84
CP009676.1\|AKS69356.1\|1540640_1541993_+\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
CP009676.1\|AKS69364.1\|1552233_1553607_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	6.09169e-30
CP009676.1\|AKS69366.1\|1554618_1555128_-\|thermonuclease	gnl\|CDD\|366169	pfam00565, SNase, Staphylococcal nuclease homolog. Present in all three domains of cellular life. Four copies in the transcriptional coactivator p100: these, however, appear to lack the active site residues of Staphylococcal nuclease. Positions 14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 110 (Arg-87) [SNase numbering in parentheses] are thought to be involved in substrate-binding and catalysis.	1.57254e-45
CP009676.1\|AKS69358.1\|1543136_1543499_+\|regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.46711e-08

>CP009676.1|AKS69359.1|1543687_1544539_+|hypothetical-protein
MSIMIWVIISALFIIVLLSLLRVKFYQNKLEVELYTKSQLLNKISKMKQEKHQFQTKEKDSSEYHLDLRRAKQTLTQDLDALVDDEKIRHYRIFTTSQIAPKNTIYPFISQFDILVVTNIGLILLNLKALKAKTFYHFEGRIPLKDESDIHQIVGHYIAHQYHNQFQSELRTHYTFSENIHENEVTYQFNKYDPYEMAEKATQNLQMHFESLVDVPVSTIGVIYCAKQNGERIDGDATPYSQVYTCENNQDFQNALQQFIATTHTNLSDASYEQVINNIGHNN
>CP009676.1|AKS69358.1|1543136_1543499_+|regulator
MNNHFKMETEAIFFYESNRKKIISELKKQHGLKLNDILFLYHLKTTNSRRISLHKVKQSIDFSLMEIHKSLTALTEKDIIGKERSTEDERKVFITIDDKQAKKMDQLLDDFNQIQKEVLQ
>CP009676.1|AKS69357.1|1542032_1542626_-|hypothetical-protein
MEENQKCHVNQLMYTLIERVPNDFKFHGEAATNLFLNDQLCLEDGIEICVNRMDLLTVLSVIPQNYRIKGLDKHGKMLNCEKHRLHQIASVEVYENEILLLNIIVYDVYNEEWMFRLNNNIRIPEKQIYYHSLKWNVDYIKPEIVLMYLLHEPVNQKQVQYCRHLIDRMSYYQFITLKVAVGEDLLRKVLTERSTYR
>CP009676.1|AKS69356.1|1540640_1541993_+|aspartate-kinase
MKVSKFGGSSVASAEQIKKVLNIVNSDNDRRIVVVSAPGKRNDDDIKTTDLLIRLYEKVVNGLDYIHKKEEILTRFQDIIDGLSLKTDVLNKIDQTLEHHISTLKDQPARLLDALKSSGENFNAQIIAAYNNEQGIPTMYLSPKEAGIVVTDDPGNAQILESSYDQINQLKNYDKKIIIPGFFGYSETNHIVTFPRGGSDITGAIVARGVKADLYENFTDVSGIYRANPKVISKPEIISEITYREMRELSYAGFSVFHDEALQPLYHYRIPVVIKNTNRPDDPGTYIVHDREIDRKNVVTGISCDKNFTSINIKKYLMNRQVGFTVNILDILAKHHISFDHMPSGIDNISIIMRSAQLAGKEQKVLEEIRQRCEIDELSVENDLAILMVVGEGMSAAVGTANKITDALAQANINLKMINQGSSEISMMFGISTKDADNAVKACYQHCYQK
>CP009676.1|AKS69355.1|1539165_1540449_-|homoserine-dehydrogenase
MKQLNVALLGLGTVGSGVVKIIEENHQQIKDTIQKDIHIKHILVRDTSKKRPLNISRYHLTEDINDILNDNDVDIIIEVMGGIEPTVDWLKAALTQKKHVITANKDLLAVHLRVLEDLAQENAVALKYEASVAGGIPIVNAINNGLNANNISKFMGVFNGTSNFILTKMTEEGTPYEDALKEAQDLGFAEVDPTDDVEGIDAARKVVITSYLSFNQVINLKDVEIEGISGVTTHDIDAAKALGYKIKLIGKGAYVNGKVEASVKPTLIAHSHQLAAVENEYNAIYVIGDAVGETMFYGKGAGSLATGSAVVSDLLNVALQFESDLHTLPPHFELKTDKTKEMMDDGETVTIKEKESYYLVINTPEVSQKQVEATLKSKLPFHKSLQIETLSPHSVAVVVVGIDHHPTTYVESEVGYHVQKVYPVEGV
>CP009676.1|AKS69354.1|1538095_1539160_-|threonine-synthase
MKLWKGLVEEYQSFLPVTDDTPKVTLNEGHTPLIYCDTISEMLGIELYVKYEGANPTGSFKDRGMAMAVTKAKEQGRKIVICASTGNTSASAAAYAARAGLKAIVVIPEGKIALGKLSQAVMYGAEIVSIEGNFDEALEIVKEVAQDGEIELVNSVNPYRIEGQKTGAFEIVDQLEGQAPDVLAIPVGNAGNITAYWKGFKTYHDANQSELPQMFGFQAEGASPIVQNKVVKNPETIATAIRIGNPASWEKAVQAIDESNGLIDAVTDEEILEAYQLMTSKEGIFSEPASNASIAGLIKLHRQGRLKQGQRVVAVLTGNGLKDPDTAIGLLENPIQALPNNKESIIQYIKDALQ
>CP009676.1|AKS69353.1|1537178_1538099_-|serine-kinase
MTKNKLSLKVPASTANLGCGFDSIGMALNKFLYIEAQIISGEKWRFVHEGPHLVGLPEDEAHYMYQIAQKVADKYRVTLPALEIKMFSDIPLARGLGSSASALVAALYIANYFGDIELSKYELLQLATNIEGHPDNVAPTIYGGLVVGYHNEETHITSVAHIDVPDVDFIVTIPSYELATTTARKVLPETLTHKEAVKYSAISNTMISALIQHNYVLAGQMMEQDGLHEPFRQHLIQDFDQIKTIAHRYHAYATVLSGAGPTILTMVKKENSGPLVRALRKEVKSCHSELATVNTTGVVSDVIHHY
>CP009676.1|AKS69352.1|1536037_1536844_-|HAD-family-hydrolase
MKIELIVMDMDDTLMTSENHLSEKTKSYLLNLQNEGYKLALASGRPTEGMLPTAKELKMDQYGSYIMSYNGAQTTDLAADEIVSKKDIEKEEFDKIVDFCRERHLFVLTYDHGKIIYDGEHEYMNRESELTGLEMEKVDDLKSYIQKSVPKVMGVDFEENIEKIIKQFGNEFNKAIDMTTSKPFFLEFMRKSVSKGAAIEALAERLDIDVNHIVAFGDSANDIEMFKTAGTAVAMDNASDEVKEQADMVTKSNDEDGIPYALEQLINK
>CP009676.1|AKS69351.1|1535549_1535864_+|hypothetical-protein
MVGQTNLFDDVLKPDERFVIVVQALENKNGQLAKRTLREYSSLTHDQMNNLFQHLKELYLDSEFEANQSAFTITVYTNLDYTADQVYAHIKRHRGKHEWTHTAK
>CP009676.1|AKS69350.1|1533863_1535318_+|gamma-aminobutyrate-permease
MEEKNLSRTLQSRHITMIAIGGAIGTGLFVATGGVIAQAGPGGAILAYIIIGIMLYFLMSSIGEMATFYPVSGAFSSYATRFVDPSLGFTMGWLYWTIWSLVTSVDVIVASNVISYWDTFHFFSPLVWSLLFLSLLFLVNVFTVKAFGEAEFWLSLIKVITIIIFIILGILMIFGILGGHYYGLKNFTIGEAPFVGGISGFLSVLLIAGFSVGGTEVVAVTAGESDNPRESMPKAIKQVFWRILLFYVLSIAVISSILAYTDPTLLNENGSIAQSPFTIVFDKVGIAFAASVINAVILTSLLSAANSGVFTTSRMLYSLSQHGQAPQFLGKIHHRSKLPLNALFTTFVFIAIVTLYANYNPKSVIGLLNIIGALVTFVWGSSLIAQIRMRRAIKKQNKNIDQLLAYKAPFFPVGPIIVIAILLFLIFGSSAEAIVHFEVSKLLQSFLPIIVLIVVYFVHKAINKTKVIPLEEIDLSEHESYRES
>CP009676.1|AKS69360.1|1546254_1547274_-|hypothetical-protein
MIIMNNMIWEIKSTLIPKTEMNIGMYTSIYNEFETKEEDILNIICDYFQKRHSNKDEVSIYERMNQEQLPYTLYQCYMLSHEEINKEHTLSANALITKKLNRLLSEQYERESYLNSINVLLEDLLNLVKSDLPLKIKRFDIKSFIKNIEFAYDLDHEYSRLIVRLESLIPLIVEELNYQSNNKTLLIYCYPESNLSPKEQIRFRNILESLGVPIIVLTGSKHFIAHDLAHMNYIRNEKQLLTAEFINHLVWDAPLNFEKHEIKRSLEKIIQLYQEVIELTPKISNYNLADIIVFEPIDIYVVIRYLKHANQDFVLDIHYDNLPIAVAKYIKMYDLKFNK
>CP009676.1|AKS69361.1|1547277_1547586_-|CRISPR-associated-protein-Cas2
MRVMIMFDLPVETKKQRRIYSKFRKRLLENGFLMMQYSIYIKSVANKDAADFSVLQVKQFLPQDGHVRSLIITEKQYEKMQILLGKEDQNIALLGDNRTIIF
>CP009676.1|AKS69362.1|1547590_1548493_-|CRISPR-associated-protein-Cas1
MSWRIVYASDVTKLSLSLNSLKIAKGDQEIKVPLSDIFAVVIEDLTVTVTVRLLVELSDYNILVIFCNQKHLPECVLQPISGHFSQYAQMKAQLSWDELSKKELWKQIVKQKILNQMTCMEHNNIDKARIRKMHELRNVVQLKDEHNIEGQAAKYYFNSFFEEFRRGDHNSLENAVLNYGYTILNAAIARTIVAKGLIPALGIHHIGGRNHFNLASDFIEPFRPLVDLFLFKHPPEDFLTKAYRLKLVNLLHARVLIDGKMQTVIRAIEIMIQSIIDYFREGQKQLLKFPDIKQFTFYEL
>CP009676.1|AKS69363.1|1548492_1551669_-|CRISPR-associated-protein-Cas9
MKNSYILGLDVGIASVGYGLIHSDSKSVIDAGVRLFPEANVENNEGRRAKRGSRRLKRRRIHRLDRVKNLLAQYHLIIDDKIPKSTNPYVIRVKGLSSPLSKSELVIALLHLAKRRGIHNVNVVMDENESTNELSTKEQLKENAKQLENRYVCELQLDRLNEQYKVRGERNRFKTEDFVREARQILTTQQKYHDIDEHFIEQYTHLLETRREYYEGPGKGSQYGWDGDLKQWYEMLMGRCTYFPEELRSVKYAYTADLFNALNDLNNLVIARDENEKLEYFEKYHIIENVFKQKKTPTLKQIAKEIDVKESDIKGYRITKNGKPQFTSFKLYHDLNKIFLDKKNLENIELLDEIAFILTLYQDPLSIKEALDQLQTLLTESEKEAIAHLNGYTGTHRLSLKCLHLLIDEMWQTSRNQMEVFTALNLKPQKYQLSKQKQIPKNIVEAFILSPVVKRSFIQSIEIVNTIIKKYGLPEEIIIELAREKNSEDRRKFLNRIQKENENTRKQVEEVIREYGNRNAKGLVEKIKLHQMQEGKCLYSLQNIPLDDLLRNPSHYEIDHIIPRSVSFDNSFNNKVLVKQEENSKKGNRTPYQYLNSNESALSYVQFKQHILNLSKSKERISKKKREYLLEERDINKFEVQKEFINRNLVDTRYATRELVQLLKSYFSANDLDVKVKTINGSFTNYLRKAWKFDKSRNKGFKHHAEDALIIANVSYLFKQSKELKEANAILENNNLSLNRNKDSKNLLTEQDYRKMFEIPKQVQDIKDYKDFKYSHRVDKKPNRQLINDSLYSTREINENHYIVQTVKDIYAKDNTKIKDLFLKTPEKLLMYKHDPQTFEKLMLVIKQYGEEKNPFAKYYEENGEYLTKYAKNEKGPTIKRLKYIGKKVGTHLDISRNFSNAKRKVVQLSIKPFRFDVFHSKAGYHMLTLTYMDIKKKEKHYQILKNEYQALKERYKVPSDAQFIGSFYYNDLISINDELFRVIGVNNSTRNIVELNMVDINYKDYCDLMGIKKTPRIFKTIAKKTEKIEKYSTDILGNQFKVKPSKSPQLIFKRGVL
>CP009676.1|AKS69364.1|1552233_1553607_-|amino-acid-permease
MKKLGFWSIVLLAINSIIGSGIFLSPGAVISIAGSYTPYVYILAAIFASILAVTFAAATKYVNKSGAAYAYATAAFGDNIGFYVGITRFIAACIAWGVMSTAVVKTVITIFGGDNTNTTLITIGFLILMVTLLLINITGNKLFEIINNLSTIGKLLALVTTIVAGIVVIVTTGEVRFSEVTHIVDTSKIDTTTFVLAIVAAFYAFTGFESVASGSEDMKNPEKNLPRAIPLAILSIAAVYLGIILVTMALNPQALIETKQVVSLVAVFHSPIIQNIILYGALISMFGINVAASFSTPRIIEAIANQQQISPWFKKRTKYDFPFNAFIVTFLIAIIIPMAFQYNMTSIIVLSSISRFIQFLVVPIGVIVFYYNKNKGTVLENVKKNVFTDVILPTISFLFTIILLVKFNWKGQFSIVEGQHTTLNYFAITAMVIGYIVLPAILFIVNKMRHQQSDIKE
>CP009676.1|AKS69365.1|1553609_1554344_-|glutamine-amidotransferase
MYMVAIIGITANILRDKDGMFPGYERCYINQDYVYSVTKHAGVPVVLPIHSDKNAIVKQVEQLDGLILTGGYDVSPHLYGEDPRNLIGETLLKRDSFEYTVLEQAKKRGIPILGICRGAQLINVYHGGTLYQDVSYRERETLRHWQGVNPTEKTHRIQILEQCHLARVFEEREIFVNSFHHQLIKDIAPDFKGTARSSDGVIECIEAQNYPYLVGVQWHPEMLWREEAMDKLFIDFIKNAKESG
>CP009676.1|AKS69366.1|1554618_1555128_-|thermonuclease
MRKFTSGLLIVVVAIFVLTLQYVNGQGPFKTTEGSTKDDSYIVTRVIDGDTIIVNKDGKEERVRMIGVDTPETVKPNTPVQPYGKEASDFTKKHLTGKRVTLEYDRAPKDRYGRTLAYVWVGDKMFNVRLAKEGLARAKFYSPNYKYRPQIEQAQKEAQKKKLNIWSEA
>CP009676.1|AKS69367.1|1555263_1555470_+|membrane-protein
MKTFKNNYLSLVVIIIAILIGFFLQHKFNLPLFAGAFIGVFLGMLGGFITQILMPKVQNHDADQKHRQ
>CP009676.1|AKS69368.1|1555814_1556033_+|hypothetical-protein
MPIVLFMLSFLASNALLILFITISLNNQIDFEFMIDIQKIKHLEKYNRLFFIMGIVLLIFSMYMLLQFLQQL
>CP009676.1|AKS69369.1|1556661_1556949_+|hypothetical-protein
MGELNKNELKQLEKRINHRFDDLERHLHDLPMHLEDKMKLIFQIEKEILRGERIKDRDKIINRIAVKLTVIGTILSTIIALFTFFWGYKEKNSIN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

Crispr_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP009676_1	1.9\|1545553\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545553-1545582	30	CP009676.1	2019993-2020022	0	1.0
CP009676_1	1.12\|1545751\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545751-1545780	30	CP009676.1	2032867-2032896	0	1.0
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	CP009676.1	2047070-2047099	0	1.0
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	CP009676.1	2036492-2036521	0	1.0
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	CP009676.1	2010031-2010060	1	0.967
CP009676_1	1.13\|1545817\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545817-1545846	30	CP009676.1	2017992-2018021	1	0.967

1. spacer 1.9|1545553|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2019993-2020022, mismatch: 0, identity: 1.0

atcagttgcctcctttgttatcgtaaaaca	CRISPR spacer
atcagttgcctcctttgttatcgtaaaaca	Protospacer
******************************

2. spacer 1.12|1545751|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2032867-2032896, mismatch: 0, identity: 1.0

tagtttttttatggtctgtaatcaacctta	CRISPR spacer
tagtttttttatggtctgtaatcaacctta	Protospacer
******************************

3. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2047070-2047099, mismatch: 0, identity: 1.0

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaacaaattcaacgaaat	Protospacer
******************************

4. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2036492-2036521, mismatch: 0, identity: 1.0

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
gtgtaactcctacttgattcgcaacactca	Protospacer
******************************

5. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2010031-2010060, mismatch: 1, identity: 0.967

accagccaccaggttggaacagatacccta	CRISPR spacer
accaaccaccaggttggaacagatacccta	Protospacer
****.*************************

6. spacer 1.13|1545817|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to position: 2017992-2018021, mismatch: 1, identity: 0.967

gtggaattgtagcaatcttattaggtcttg	CRISPR spacer
gtgcaattgtagcaatcttattaggtcttg	Protospacer
*** **************************

MGE targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	MK075001	Staphylococcus phage phiSP15-1, complete genome	20246-20275	0	1.0
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	NC_007051	Staphylococcus phage 2638A, complete genome	39860-39889	0	1.0
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	MK450538	Staphylococcus phage vB_SpsS_QT1, complete genome	41589-41618	0	1.0
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	MK075004	Staphylococcus phage phiSP119-1, complete genome	24443-24472	0	1.0
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	AY954954	Bacteriophage 2638A, complete genome	39860-39889	0	1.0
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_KX520649	Staphylococcus epidermidis strain 14-01514 plasmid p14-01514, complete sequence	1973-2003	1	0.968
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_KX149096	Staphylococcus aureus strain WG260 plasmid pWBG4, complete sequence	22086-22116	1	0.968
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_KM521837	Staphylococcus epidermidis strain 12-02300 plasmid p12-02300, complete sequence	1032-1062	1	0.968
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_AP019752	Staphylococcus aureus strain JRA307 plasmid pJRA307-1, complete sequence	45943-45973	1	0.968
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH587576	Staphylococcus aureus strain WG512 plasmid pWBG14, complete sequence	2977-3007	1	0.968
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	KY653117	Staphylococcus phage IME1323_01, complete genome	7273-7302	1	0.967
CP009676_1	1.4\|1545222\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545222-1545250	29	KX827371	Staphylococcus phage SpT99F3, complete genome	10454-10482	2	0.931
CP009676_1	1.4\|1545222\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545222-1545250	29	MT423824	Staphylococcus virus pSp_SNUABM-S, complete genome	17478-17506	2	0.931
CP009676_1	1.4\|1545222\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545222-1545250	29	MT423823	Staphylococcus virus pSp_SNUABM-J, complete genome	18220-18248	2	0.931
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_KY436023	Staphylococcus aureus strain NRL 11/608 plasmid pETB608, complete sequence	8491-8521	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_KU521355	Staphylococcus aureus subsp. aureus strain M12/0145 plasmid pSAM12-0145 clone ST22, complete sequence	12636-12666	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_KX149097	Staphylococcus aureus strain WBG7410 plasmid pWBG707, complete sequence	32972-33002	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NC_013453	Staphylococcus aureus subsp. aureus ED98 plasmid pAVX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP029628	Staphylococcus aureus strain MOK042 plasmid unnamed, complete sequence	17154-17184	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP042651	Staphylococcus aureus strain X22 plasmid unnamed, complete sequence	16243-16273	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP042158	Staphylococcus aureus strain B3-17D plasmid pSALNC17, complete sequence	9042-9072	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP042154	Staphylococcus aureus strain B4-59C plasmid pSALNC14, complete sequence	5105-5135	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP042005	Staphylococcus aureus strain B3-14B plasmid pSALNT16, complete sequence	15154-15184	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP028164	Staphylococcus aureus strain CFSAN064038 plasmid pGMI17-006, complete sequence	18756-18786	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP042108	Staphylococcus aureus strain B8-13D plasmid pSALNCG17, complete sequence	9108-9138	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NC_021076	Staphylococcus aureus strain 004-737X plasmid pSA737, complete sequence	10332-10362	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP053077	Staphylococcus aureus strain SA01 plasmid pSA01-03, complete sequence	6890-6920	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785251	Staphylococcus aureus strain ch8 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785243	Staphylococcus aureus strain pa2 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NC_020227	Staphylococcus aureus strain CH-91 plasmid pCH91, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP042045	Staphylococcus aureus strain B2-15A plasmid pSALNCL17, complete sequence	9042-9072	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH587577	Staphylococcus aureus strain WBG10513 plasmid pWBG707, complete sequence	3042-3072	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MK388402	Staphylococcus aureus strain ph2 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785252	Staphylococcus aureus strain ch23 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785235	Staphylococcus aureus strain ch10 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785249	Staphylococcus aureus strain ch5 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785229	Staphylococcus aureus strain pa3 plasmid pPA3, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785244	Staphylococcus aureus strain tu1 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_MH785248	Staphylococcus aureus strain ch9 plasmid pAvX, complete sequence	229-259	2	0.935
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	KY653129	Staphylococcus phage IME1365_01, complete genome	3762-3791	2	0.933
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	MT423824	Staphylococcus virus pSp_SNUABM-S, complete genome	12268-12297	2	0.933
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	MT423823	Staphylococcus virus pSp_SNUABM-J, complete genome	12846-12875	2	0.933
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	MF417907	Uncultured Caudovirales phage clone 7F_7, partial genome	39220-39249	2	0.933
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	JN700520	Staphylococcus phage StB12, complete genome	40956-40984	4	0.862
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	NC_019914	Staphylococcus phage StB27, complete genome	37765-37793	4	0.862
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MG770897	Staphylococcus phage SH-St 15644, complete genome	38125-38154	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	AF424783	Staphylococcus aureus phage phi 13, complete genome	14445-14474	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MG029513	Staphylococcus phage phiSa2wa_st72, complete genome	13661-13690	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	NC_004617	Staphylococcus prophage phi 13, complete genome	14445-14474	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	KY056620	Staphylococcus phage P240, complete genome	38491-38520	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	NC_014460	Staphylococcus phage SAP-26, complete genome	38300-38329	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MK801681	Staphylococcus phage SAP11, complete genome	28207-28236	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	KY653125	Staphylococcus phage IME1346_01, complete genome	14463-14492	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	NC_021773	Staphylococcus phage JS01, complete genome	25206-25235	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MH401414	Staphylococcus aureus phage SA45ruMSSAST97, complete genome	25204-25233	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MK940809	Staphylococcus phage Sa2wa_st8, complete genome	12364-12393	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	KF831354	Staphylococcus phage phiBU01, complete genome	28108-28137	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	DQ530360	Staphylococcus aureus phage phiNM2, complete genome	14948-14977	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MH401415	Staphylococcus aureus phage SA537ruMSSAST97, complete genome	25206-25235	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	JQ779023	Staphylococcus phage SMSAP5, complete genome	7455-7484	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MH321492	Staphylococcusphage Lorac, complete genome	41515-41544	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	NC_008583	Staphylococcus aureus phage phiNM1, complete genome	14953-14982	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MT013111	Staphylococcus phage SA75, complete genome	41435-41464	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	KF598856	Staphylococcus phage YMC/09/04/R1988, complete genome	37772-37801	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	DQ530362	Staphylococcus aureus phage phiNM4, complete genome	14856-14885	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	NC_048635	Staphylococcus phage P630, complete genome	38444-38473	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	NC_048713	Staphylococcus aureus phage SA345ruMSSAST8, complete genome	16425-16454	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MG029517	Staphylococcus phage phiSa2wa_st93, complete genome	12364-12393	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MH384260	Staphylococcus phage SA780ruMSSAST101, complete genome	15321-15350	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MG029516	Staphylococcus phage phiSa2wa_st93mssa, complete genome	12364-12393	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	KP209285	UNVERIFIED: Staphylococcus phage PhiNM4-gamma4, complete genome	12082-12111	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	NC_048658	Staphylococcus phage SA7, complete genome	10991-11020	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MK801680	Staphylococcus phage SAP8, complete genome	38051-38080	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	JX094501	Staphylococcus phage SA13, complete genome	14369-14398	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	KJ452291	Staphylococcus phage 3MRA, complete genome	24946-24975	4	0.867
CP009676_1	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	MG557619	Staphylococcus phage HSA84, complete genome	40861-40890	4	0.867
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KR709302	Staphylococcus phage 55-2, complete genome	39664-39693	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	JC195831	Sequence 15 from Patent EP2318531	1268-1297	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MH025825	Staphylococcus phage trsa10 endolysin gene, complete cds	1268-1297	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	U72397	Bacteriophage 80 alpha holin and amidase genes, complete cds	2362-2391	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	AF424781	Staphylococcus aureus phage phi 11, complete genome	42187-42216	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MH025826	Staphylococcus phage trsa14 endolysin gene, complete cds	1268-1297	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	NC_007061	Staphylococcus phage 29, complete genome	24962-24991	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	NC_004615	Staphylococcus phage 11, complete genome	42187-42216	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	NC_007048	Staphylococcus phage 69, complete genome	25761-25790	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	NC_007062	Staphylococcus phage 52A, complete genome	25104-25133	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	JQ957932	Staphylococcus phage StauST398-2, complete genome	43131-43160	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	AY954963	Bacteriophage 55, complete genome	24874-24903	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	JX274647	Staphylococcus phage SP6, complete genome	41618-41647	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	HI401844	Sequence 1 from Patent EP2054531	1165-1194	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	AY954964	Bacteriophage 29, complete genome	24962-24991	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	NC_007065	Staphylococcus phage X2, complete genome	26044-26073	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	DQ530360	Staphylococcus aureus phage phiNM2, complete genome	42294-42323	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KT186243	Staphylococcus phage vB_SauS_phi2, complete genome	23548-23577	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KC677663	Staphylococcus phage SA12, complete genome	36656-36685	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MH321492	Staphylococcusphage Lorac, complete genome	25716-25745	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	AY954965	Bacteriophage 52A, complete genome	25104-25133	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MH025827	Staphylococcus phage trsa15 endolysin gene, complete cds	1268-1297	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KR709303	Staphylococcus phage 55-3, complete genome	40097-40126	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MT013111	Staphylococcus phage SA75, complete genome	25754-25783	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	JX274646	Staphylococcus phage SP5, complete genome	42581-42610	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	DQ908929	Staphylococcus phage 80, complete genome	40108-40137	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KM389280	UNVERIFIED: Staphylococcus phage Phi06_2986 B clone contig00001 genomic sequence	38453-38482	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KM389416	UNVERIFIED: Staphylococcus phage Phi06_3106 B clone contig00001 genomic sequence	4163-4192	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	AY954951	Bacteriophage 69, complete genome	25761-25790	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MH104949	Staphylococcus virus 52a endolysin gene, complete cds	1268-1297	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	EU861004	Staphylococcus phage phiSauS-IPLA88, complete genome	41309-41338	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	JX094501	Staphylococcus phage SA13, complete genome	41338-41367	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KJ452291	Staphylococcus phage 3MRA, complete genome	40419-40448	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	KM389348	UNVERIFIED: Staphylococcus phage Phi06_3244 B clone contig00001 genomic sequence	20467-20496	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	AY954968	Bacteriophage X2, complete genome	26044-26073	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MG557619	Staphylococcus phage HSA84, complete genome	25684-25713	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	EU573240	Staphylococcus phage phiH5 LysH5 gene, complete cds	150-179	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	NC_007060	Staphylococcus phage 55, complete genome	24874-24903	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	MN904510	Staphylococcus phage vB_SauS-SAP27, complete genome	23732-23761	6	0.8
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	115055-115083	6	0.793
CP009676_1	1.5\|1545287\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545287-1545317	31	AP013499	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S39-C84	18486-18516	6	0.806
CP009676_1	1.5\|1545287\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545287-1545317	31	AP013497	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S35-C79	8544-8574	6	0.806
CP009676_1	1.5\|1545287\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545287-1545317	31	AP013498	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S38-C76	20271-20301	6	0.806
CP009676_1	1.5\|1545287\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545287-1545317	31	AP013776	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S36-C73, * SEQUENCING IN PROGRESS *	22479-22509	6	0.806
CP009676_1	1.5\|1545287\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545287-1545317	31	AP013496	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S28-C61	27805-27835	6	0.806
CP009676_1	1.5\|1545287\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545287-1545317	31	AP013775	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S26-C73, * SEQUENCING IN PROGRESS *	13168-13198	6	0.806
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	AP013482	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S45-C47	8920-8949	6	0.8
CP009676_1	1.13\|1545817\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545817-1545846	30	KY806579	Riemerella anatipestifer strain RA-JX plasmid JX, complete sequence	1376-1405	6	0.8
CP009676_1	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	NZ_CP020429	Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence	166127-166156	7	0.767
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	MN117721	Escherichia phage vB_EcoP_Bp7, complete genome	20687-20715	7	0.759
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	LT546029	Enterococcus phage VFW genome assembly, chromosome: VFW	55070-55098	7	0.759
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	324471-324501	7	0.774
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	MN019128	Escherichia phage Henu7, complete genome	14012-14041	7	0.767
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	KM983327	Clostridium phage phiCT453A, complete genome	14541-14570	7	0.767
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	NZ_CP028248	Pediococcus acidilactici strain SRCM102731 plasmid unnamed1, complete sequence	2425-2453	8	0.724
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	NZ_CP028250	Pediococcus acidilactici strain SRCM102732 plasmid unnamed1, complete sequence	26839-26867	8	0.724
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	NZ_CP035155	Pediococcus acidilactici strain SRCM103387 plasmid unnamed1	27007-27035	8	0.724
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	NZ_CP018765	Pediococcus acidilactici strain BCC1 plasmid pbcp2, complete sequence	49237-49265	8	0.724
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	KF319301	Thermus phage T72 RecA (recA) gene, complete cds	59-87	8	0.724
CP009676_1	1.3\|1545157\|29\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545157-1545185	29	KF723224	UNVERIFIED: Thermus phage T72, partial genome	5162-5190	8	0.724
CP009676_1	1.5\|1545287\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545287-1545317	31	MT774407	CrAssphage cr125_1, complete genome	14520-14550	8	0.742
CP009676_1	1.6\|1545354\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545354-1545383	30	NC_020060	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence	125094-125123	8	0.733
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_CP026559	Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p2_tig3, complete sequence	33182-33212	8	0.742
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_LT222317	Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf plasmid p58T5, complete sequence	41891-41921	8	0.742
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_LT963407	Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP5, complete sequence	10594-10624	8	0.742
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_LT963398	Pseudomonas cerasi isolate PL963 plasmid PP3, complete sequence	66024-66054	8	0.742
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_LT963393	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence	7515-7545	8	0.742
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_LT963410	Pseudomonas syringae isolate CFBP3840 plasmid PP1, complete sequence	90308-90338	8	0.742
CP009676_1	1.8\|1545486\|31\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545486-1545516	31	NZ_LT985212	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP3, complete sequence	54261-54291	8	0.742
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	113348-113377	8	0.733
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	MK448945	Streptococcus phage Javan454, complete genome	17576-17605	8	0.733
CP009676_1	1.10\|1545619\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545619-1545648	30	MK448673	Streptococcus phage Javan119, complete genome	19510-19539	8	0.733
CP009676_1	1.13\|1545817\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545817-1545846	30	MG545917	Vibrio phage VEN, complete genome	37213-37242	8	0.733
CP009676_1	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	NC_019760	Microcoleus sp. PCC 7113 plasmid pMIC7113.02, complete sequence	74507-74536	8	0.733
CP009676_1	1.13\|1545817\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545817-1545846	30	MN047793	Xanthomonas phage Xoo-sp13, complete genome	51965-51994	9	0.7

1. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK075001 (Staphylococcus phage phiSP15-1, complete genome) position: , mismatch: 0, identity: 1.0

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tctttatcatgtttaaagttgtagaataca	Protospacer
******************************

2. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_007051 (Staphylococcus phage 2638A, complete genome) position: , mismatch: 0, identity: 1.0

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tctttatcatgtttaaagttgtagaataca	Protospacer
******************************

3. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK450538 (Staphylococcus phage vB_SpsS_QT1, complete genome) position: , mismatch: 0, identity: 1.0

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tctttatcatgtttaaagttgtagaataca	Protospacer
******************************

4. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK075004 (Staphylococcus phage phiSP119-1, complete genome) position: , mismatch: 0, identity: 1.0

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tctttatcatgtttaaagttgtagaataca	Protospacer
******************************

5. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AY954954 (Bacteriophage 2638A, complete genome) position: , mismatch: 0, identity: 1.0

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tctttatcatgtttaaagttgtagaataca	Protospacer
******************************

6. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX520649 (Staphylococcus epidermidis strain 14-01514 plasmid p14-01514, complete sequence) position: , mismatch: 1, identity: 0.968

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgtttcaaagaattatgttt	Protospacer
**********.********************

7. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX149096 (Staphylococcus aureus strain WG260 plasmid pWBG4, complete sequence) position: , mismatch: 1, identity: 0.968

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgtttcaaagaattatgttt	Protospacer
**********.********************

8. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM521837 (Staphylococcus epidermidis strain 12-02300 plasmid p12-02300, complete sequence) position: , mismatch: 1, identity: 0.968

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgtttcaaagaattatgttt	Protospacer
**********.********************

9. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019752 (Staphylococcus aureus strain JRA307 plasmid pJRA307-1, complete sequence) position: , mismatch: 1, identity: 0.968

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgtttcaaagaattatgttt	Protospacer
**********.********************

10. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587576 (Staphylococcus aureus strain WG512 plasmid pWBG14, complete sequence) position: , mismatch: 1, identity: 0.968

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgtttcaaagaattatgttt	Protospacer
**********.********************

11. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KY653117 (Staphylococcus phage IME1323_01, complete genome) position: , mismatch: 1, identity: 0.967

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaataaattcaacgaaat	Protospacer
***************.**************

12. spacer 1.4|1545222|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KX827371 (Staphylococcus phage SpT99F3, complete genome) position: , mismatch: 2, identity: 0.931

tagtgccattcataatagtttcgaaccca	CRISPR spacer
tagtgccattcatgatagtctcgaaccca	Protospacer
*************.*****.*********

13. spacer 1.4|1545222|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MT423824 (Staphylococcus virus pSp_SNUABM-S, complete genome) position: , mismatch: 2, identity: 0.931

tagtgccattcataatagtttcgaaccca	CRISPR spacer
tagtgccattcatgatagtctcgaaccca	Protospacer
*************.*****.*********

14. spacer 1.4|1545222|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MT423823 (Staphylococcus virus pSp_SNUABM-J, complete genome) position: , mismatch: 2, identity: 0.931

tagtgccattcataatagtttcgaaccca	CRISPR spacer
tagtgccattcatgatagtctcgaaccca	Protospacer
*************.*****.*********

15. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY436023 (Staphylococcus aureus strain NRL 11/608 plasmid pETB608, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

16. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU521355 (Staphylococcus aureus subsp. aureus strain M12/0145 plasmid pSAM12-0145 clone ST22, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

17. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX149097 (Staphylococcus aureus strain WBG7410 plasmid pWBG707, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

18. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_013453 (Staphylococcus aureus subsp. aureus ED98 plasmid pAVX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

19. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029628 (Staphylococcus aureus strain MOK042 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

20. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042651 (Staphylococcus aureus strain X22 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

21. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042158 (Staphylococcus aureus strain B3-17D plasmid pSALNC17, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

22. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042154 (Staphylococcus aureus strain B4-59C plasmid pSALNC14, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

23. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042005 (Staphylococcus aureus strain B3-14B plasmid pSALNT16, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

24. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028164 (Staphylococcus aureus strain CFSAN064038 plasmid pGMI17-006, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

25. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042108 (Staphylococcus aureus strain B8-13D plasmid pSALNCG17, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

26. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_021076 (Staphylococcus aureus strain 004-737X plasmid pSA737, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

27. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053077 (Staphylococcus aureus strain SA01 plasmid pSA01-03, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

28. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785251 (Staphylococcus aureus strain ch8 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

29. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785243 (Staphylococcus aureus strain pa2 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

30. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_020227 (Staphylococcus aureus strain CH-91 plasmid pCH91, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

31. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042045 (Staphylococcus aureus strain B2-15A plasmid pSALNCL17, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

32. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587577 (Staphylococcus aureus strain WBG10513 plasmid pWBG707, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

33. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK388402 (Staphylococcus aureus strain ph2 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

34. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785252 (Staphylococcus aureus strain ch23 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

35. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785235 (Staphylococcus aureus strain ch10 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

36. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785249 (Staphylococcus aureus strain ch5 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

37. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785229 (Staphylococcus aureus strain pa3 plasmid pPA3, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

38. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785244 (Staphylococcus aureus strain tu1 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

39. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785248 (Staphylococcus aureus strain ch9 plasmid pAvX, complete sequence) position: , mismatch: 2, identity: 0.935

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
taggataaccctgttttaaagaattatgttt	Protospacer
**********.*****.**************

40. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 2, identity: 0.933

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaataaatttaacgaaat	Protospacer
***************.*****.********

41. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MT423824 (Staphylococcus virus pSp_SNUABM-S, complete genome) position: , mismatch: 2, identity: 0.933

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaacagatttaacgaaat	Protospacer
*****************.***.********

42. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MT423823 (Staphylococcus virus pSp_SNUABM-J, complete genome) position: , mismatch: 2, identity: 0.933

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaacagatttaacgaaat	Protospacer
*****************.***.********

43. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 2, identity: 0.933

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaataaatttaacgaaat	Protospacer
***************.*****.********

44. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 4, identity: 0.862

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
aaattcttcttctgtaacaaaaccacgtt	Protospacer
.******************** **.**.*

45. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_019914 (Staphylococcus phage StB27, complete genome) position: , mismatch: 4, identity: 0.862

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
aaattcttcttctgtaacaaaaccacgtt	Protospacer
.******************** **.**.*

46. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MG770897 (Staphylococcus phage SH-St 15644, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

47. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AF424783 (Staphylococcus aureus phage phi 13, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

48. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MG029513 (Staphylococcus phage phiSa2wa_st72, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

49. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_004617 (Staphylococcus prophage phi 13, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

50. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KY056620 (Staphylococcus phage P240, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

51. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_014460 (Staphylococcus phage SAP-26, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

52. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK801681 (Staphylococcus phage SAP11, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

53. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KY653125 (Staphylococcus phage IME1346_01, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

54. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_021773 (Staphylococcus phage JS01, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

55. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH401414 (Staphylococcus aureus phage SA45ruMSSAST97, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

56. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK940809 (Staphylococcus phage Sa2wa_st8, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

57. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KF831354 (Staphylococcus phage phiBU01, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

58. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to DQ530360 (Staphylococcus aureus phage phiNM2, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

59. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH401415 (Staphylococcus aureus phage SA537ruMSSAST97, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

60. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JQ779023 (Staphylococcus phage SMSAP5, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

61. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH321492 (Staphylococcusphage Lorac, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

62. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_008583 (Staphylococcus aureus phage phiNM1, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

63. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MT013111 (Staphylococcus phage SA75, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

64. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KF598856 (Staphylococcus phage YMC/09/04/R1988, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

65. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to DQ530362 (Staphylococcus aureus phage phiNM4, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

66. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_048635 (Staphylococcus phage P630, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

67. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_048713 (Staphylococcus aureus phage SA345ruMSSAST8, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

68. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MG029517 (Staphylococcus phage phiSa2wa_st93, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

69. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH384260 (Staphylococcus phage SA780ruMSSAST101, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

70. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MG029516 (Staphylococcus phage phiSa2wa_st93mssa, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

71. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KP209285 (UNVERIFIED: Staphylococcus phage PhiNM4-gamma4, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

72. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_048658 (Staphylococcus phage SA7, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

73. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK801680 (Staphylococcus phage SAP8, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

74. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JX094501 (Staphylococcus phage SA13, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

75. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KJ452291 (Staphylococcus phage 3MRA, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

76. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MG557619 (Staphylococcus phage HSA84, complete genome) position: , mismatch: 4, identity: 0.867

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
atgacactcctacttgattcgcaatactca	Protospacer
.**  *******************.*****

77. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KR709302 (Staphylococcus phage 55-2, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

78. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JC195831 (Sequence 15 from Patent EP2318531) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

79. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH025825 (Staphylococcus phage trsa10 endolysin gene, complete cds) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

80. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to U72397 (Bacteriophage 80 alpha holin and amidase genes, complete cds) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

81. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AF424781 (Staphylococcus aureus phage phi 11, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

82. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH025826 (Staphylococcus phage trsa14 endolysin gene, complete cds) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

83. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_007061 (Staphylococcus phage 29, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

84. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_004615 (Staphylococcus phage 11, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

85. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_007048 (Staphylococcus phage 69, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

86. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_007062 (Staphylococcus phage 52A, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

87. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JQ957932 (Staphylococcus phage StauST398-2, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

88. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AY954963 (Bacteriophage 55, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

89. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JX274647 (Staphylococcus phage SP6, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

90. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to HI401844 (Sequence 1 from Patent EP2054531) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

91. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AY954964 (Bacteriophage 29, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

92. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_007065 (Staphylococcus phage X2, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

93. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to DQ530360 (Staphylococcus aureus phage phiNM2, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

94. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KT186243 (Staphylococcus phage vB_SauS_phi2, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

95. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KC677663 (Staphylococcus phage SA12, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

96. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH321492 (Staphylococcusphage Lorac, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

97. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AY954965 (Bacteriophage 52A, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

98. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH025827 (Staphylococcus phage trsa15 endolysin gene, complete cds) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

99. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KR709303 (Staphylococcus phage 55-3, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

100. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MT013111 (Staphylococcus phage SA75, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

101. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JX274646 (Staphylococcus phage SP5, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

102. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to DQ908929 (Staphylococcus phage 80, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

103. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KM389280 (UNVERIFIED: Staphylococcus phage Phi06_2986 B clone contig00001 genomic sequence) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

104. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KM389416 (UNVERIFIED: Staphylococcus phage Phi06_3106 B clone contig00001 genomic sequence) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

105. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AY954951 (Bacteriophage 69, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

106. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MH104949 (Staphylococcus virus 52a endolysin gene, complete cds) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

107. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to EU861004 (Staphylococcus phage phiSauS-IPLA88, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

108. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to JX094501 (Staphylococcus phage SA13, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

109. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KJ452291 (Staphylococcus phage 3MRA, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

110. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KM389348 (UNVERIFIED: Staphylococcus phage Phi06_3244 B clone contig00001 genomic sequence) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

111. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AY954968 (Bacteriophage X2, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

112. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MG557619 (Staphylococcus phage HSA84, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

113. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to EU573240 (Staphylococcus phage phiH5 LysH5 gene, complete cds) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

114. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_007060 (Staphylococcus phage 55, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatatccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

115. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MN904510 (Staphylococcus phage vB_SauS-SAP27, complete genome) position: , mismatch: 6, identity: 0.8

accagccaccaggttggaacagatacccta	CRISPR spacer
aatacccaccaggttggaactgataaccca	Protospacer
* .* *************** **** **.*

116. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 6, identity: 0.793

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
gatttcttcttctgtaaaaaatcaggtcg	Protospacer
** ************** ***** *  *

117. spacer 1.5|1545287|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AP013499 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S39-C84) position: , mismatch: 6, identity: 0.806

tgatacgcataatacaaatccttacctaaaa	CRISPR spacer
tcatttccataatacaaatccttagataaaa	Protospacer
* ** . *****************  *****

118. spacer 1.5|1545287|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AP013497 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S35-C79) position: , mismatch: 6, identity: 0.806

tgatacgcataatacaaatccttacctaaaa	CRISPR spacer
tcatttccataatacaaatccttagataaaa	Protospacer
* ** . *****************  *****

119. spacer 1.5|1545287|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AP013498 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S38-C76) position: , mismatch: 6, identity: 0.806

tgatacgcataatacaaatccttacctaaaa	CRISPR spacer
tcatttccataatacaaatccttagataaaa	Protospacer
* ** . *****************  *****

120. spacer 1.5|1545287|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AP013776 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S36-C73, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

tgatacgcataatacaaatccttacctaaaa	CRISPR spacer
tcatttccataatacaaatccttagataaaa	Protospacer
* ** . *****************  *****

121. spacer 1.5|1545287|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AP013496 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S28-C61) position: , mismatch: 6, identity: 0.806

tgatacgcataatacaaatccttacctaaaa	CRISPR spacer
tcatttccataatacaaatccttagataaaa	Protospacer
* ** . *****************  *****

122. spacer 1.5|1545287|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AP013775 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S26-C73, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

tgatacgcataatacaaatccttacctaaaa	CRISPR spacer
tcatttccataatacaaatccttagataaaa	Protospacer
* ** . *****************  *****

123. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to AP013482 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S45-C47) position: , mismatch: 6, identity: 0.8

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tttgcaacatgtttaaaattgtacaataca	Protospacer
*.* .* **********.***** ******

124. spacer 1.13|1545817|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KY806579 (Riemerella anatipestifer strain RA-JX plasmid JX, complete sequence) position: , mismatch: 6, identity: 0.8

gtggaattgtagcaatcttattaggtcttg	CRISPR spacer
caaaaattgtagcaatcttattacttcttg	Protospacer
  ..*******************  *****

125. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

--accagccaccaggttggaacagatacccta	CRISPR spacer
ttttcag--accagattggaacagataccccg	Protospacer
   .***  *****.***************..

126. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MN117721 (Escherichia phage vB_EcoP_Bp7, complete genome) position: , mismatch: 7, identity: 0.759

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
agattcttgttctgtaataaatccgccaa	Protospacer
..****** ********.********

127. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 7, identity: 0.759

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
gaattcttcttctgtaatatatccatcta	Protospacer
*****************.* ****.. .

128. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 7, identity: 0.774

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
aaaaataaccttgtttaaaataattatatat	Protospacer
 *..************ *** ******.* *

129. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MN019128 (Escherichia phage Henu7, complete genome) position: , mismatch: 7, identity: 0.767

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
aaatactcatgattaaaggtgtagaataca	Protospacer
   *  ***** ****** ***********

130. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KM983327 (Clostridium phage phiCT453A, complete genome) position: , mismatch: 7, identity: 0.767

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tcaaaatcatgtttaaagctatagaatatt	Protospacer
**   *************.*.*******.

131. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028248 (Pediococcus acidilactici strain SRCM102731 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
taattcttcttctgtaaaaaattgttctt	Protospacer
 **************** ****.  . .*

132. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028250 (Pediococcus acidilactici strain SRCM102732 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
taattcttcttctgtaaaaaattgttctt	Protospacer
 **************** ****.  . .*

133. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035155 (Pediococcus acidilactici strain SRCM103387 plasmid unnamed1) position: , mismatch: 8, identity: 0.724

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
taattcttcttctgtaaaaaattgttctt	Protospacer
 **************** ****.  . .*

134. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018765 (Pediococcus acidilactici strain BCC1 plasmid pbcp2, complete sequence) position: , mismatch: 8, identity: 0.724

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
taattcttcttctgtaaaaaattgttctt	Protospacer
 **************** ****.  . .*

135. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KF319301 (Thermus phage T72 RecA (recA) gene, complete cds) position: , mismatch: 8, identity: 0.724

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
taattcttcctctgtaacaaatattgtat	Protospacer
 ********.************ .    *

136. spacer 1.3|1545157|29|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to KF723224 (UNVERIFIED: Thermus phage T72, partial genome) position: , mismatch: 8, identity: 0.724

gaattcttcttctgtaacaaatccgcgct	CRISPR spacer
taattcttcctctgtaacaaatattgtat	Protospacer
 ********.************ .    *

137. spacer 1.5|1545287|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MT774407 (CrAssphage cr125_1, complete genome) position: , mismatch: 8, identity: 0.742

tgatacgcataatacaaatccttacctaaaa	CRISPR spacer
ctttccaaataatacaaatctttacataaaa	Protospacer
.  * *. ************.**** *****

138. spacer 1.6|1545354|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_020060 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence) position: , mismatch: 8, identity: 0.733

ataggcatacacccgtaatcaaatttgata	CRISPR spacer
ctcaccacacatccgtaatcaaatttgaac	Protospacer
 * . **.***.****************

139. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026559 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p2_tig3, complete sequence) position: , mismatch: 8, identity: 0.742

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
tcgcttaaccttgttttaaagaatcatgcag	Protospacer
* *  ***********.*******.***.

140. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT222317 (Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf plasmid p58T5, complete sequence) position: , mismatch: 8, identity: 0.742

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
tcgcttaaccttgttttaaagaatcatgcag	Protospacer
* *  ***********.*******.***.

141. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963407 (Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP5, complete sequence) position: , mismatch: 8, identity: 0.742

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
tcgcttaaccttgttttaaagaatcatgcag	Protospacer
* *  ***********.*******.***.

142. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963398 (Pseudomonas cerasi isolate PL963 plasmid PP3, complete sequence) position: , mismatch: 8, identity: 0.742

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
tcgcttaaccttgttttaaagaatcatgcag	Protospacer
* *  ***********.*******.***.

143. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963393 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence) position: , mismatch: 8, identity: 0.742

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
tcgcttaaccttgttttaaagaatcatgcag	Protospacer
* *  ***********.*******.***.

144. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963410 (Pseudomonas syringae isolate CFBP3840 plasmid PP1, complete sequence) position: , mismatch: 8, identity: 0.742

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
tcgcttaaccttgttttaaagaatcatgcag	Protospacer
* *  ***********.*******.***.

145. spacer 1.8|1545486|31|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985212 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP3, complete sequence) position: , mismatch: 8, identity: 0.742

taggataaccttgtttcaaagaattatgttt	CRISPR spacer
tcgcttaaccttgttttaaagaatcatgcag	Protospacer
* *  ***********.*******.***.

146. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 8, identity: 0.733

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
gttttatcatgtttaaaattgaagaaggat	Protospacer
 .***************.*** **** .

147. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 8, identity: 0.733

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tctttatcttgtttaaaggtgtaagtatta	Protospacer
******** ********* ****..   .*

148. spacer 1.10|1545619|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 8, identity: 0.733

tctttatcatgtttaaagttgtagaataca	CRISPR spacer
tctttatcttgtttaaaggtgtaagtatta	Protospacer
******** ********* ****..   .*

149. spacer 1.13|1545817|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MG545917 (Vibrio phage VEN, complete genome) position: , mismatch: 8, identity: 0.733

gtggaattgtagcaatcttattaggtcttg	CRISPR spacer
cttccgttgcagcattcttattaggtcttc	Protospacer
 *   .***.**** **************

150. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to NC_019760 (Microcoleus sp. PCC 7113 plasmid pMIC7113.02, complete sequence) position: , mismatch: 8, identity: 0.733

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
cgtggcttacactaccaaattcaacaaccc	Protospacer
 .*********.** **********.*  .

151. spacer 1.13|1545817|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 9, identity: 0.7

gtggaattgtagcaatcttattaggtcttg	CRISPR spacer
ctagaattgtcgcaatcttattagcaaaac	Protospacer
 *.******* *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1058250 : 1081837

Staphylococcus_phage(90.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS68911.1\|1058250_1058568_-	membrane protein	A0A2H4JDX0	uncultured_Caudovirales_phage	9.6e-16	46.5
AKS68912.1\|1058861_1060256_+	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.0e-130	52.1
AKS68913.1\|1060252_1061242_+	O-succinylbenzoate-CoA synthase	A0A2H4PQM0	Staphylococcus_phage	6.0e-80	45.7
AKS68914.1\|1061217_1061469_-	membrane protein	A0A2H4PQM5	Staphylococcus_phage	3.5e-29	69.9
AKS68915.1\|1061526_1061997_+	nucleoside triphosphatase	A0A2H4PQM4	Staphylococcus_phage	8.9e-34	47.8
AKS68916.1\|1061977_1062748_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	1.8e-84	62.7
AKS68917.1\|1062878_1064462_-	phosphoenolpyruvate carboxykinase [ATP]	A0A2H4PQN1	Staphylococcus_phage	1.2e-239	75.4
AKS68918.1\|1065009_1066209_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	3.1e-179	80.8
AKS68919.1\|1066298_1067210_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	2.1e-87	67.9
AKS68920.1\|1067797_1068634_+	glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	1.6e-105	65.3
AKS68921.1\|1068773_1069130_-	hypothetical protein	NA	NA	NA	NA
AKS68922.1\|1069126_1069492_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	2.2e-32	59.3
AKS68923.1\|1069528_1069831_-	membrane protein	NA	NA	NA	NA
AKS68924.1\|1069986_1070697_+	transaldolase	M1PR54	Cyanophage	5.0e-20	37.0
AKS68925.1\|1070944_1071394_+	hypothetical protein	NA	NA	NA	NA
AKS68926.1\|1071396_1071825_-	hypothetical protein	NA	NA	NA	NA
AKS68927.1\|1071827_1072316_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.1e-21	43.8
AKS68928.1\|1072520_1072742_+	hypothetical protein	NA	NA	NA	NA
AKS68929.1\|1072898_1073762_+	autolysin	A0A1W6JQU5	Staphylococcus_phage	9.3e-37	44.4
AKS70242.1\|1074083_1074971_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
AKS68930.1\|1075196_1076756_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	3.4e-13	60.3
AKS68931.1\|1077295_1078342_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A2H4PQS8	Staphylococcus_phage	8.7e-114	58.1
AKS68932.1\|1078346_1078976_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	1.8e-61	57.1
AKS68933.1\|1078990_1080172_+	GTP cyclohydrolase	A0A2H4PQS2	Staphylococcus_phage	1.7e-150	65.4
AKS68934.1\|1080190_1080649_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-51	66.0
AKS68935.1\|1080853_1081837_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-121	66.9

DBSCAN-SWA_2

1085656 : 1093043

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS68940.1\|1085656_1086217_-	rRNA methyltransferase	A0A2H4PQV0	Staphylococcus_phage	7.8e-61	61.1
AKS68941.1\|1086213_1087167_-	hypothetical protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-63	78.5
AKS68942.1\|1087311_1088493_+	multidrug MFS transporter	A0A2H4PQR6	Staphylococcus_phage	8.3e-153	69.0
AKS68943.1\|1088868_1091280_+\|tRNA	leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	80.8
AKS68944.1\|1091298_1091610_+	sulfurtransferase	A0A2H4PQR9	Staphylococcus_phage	1.1e-32	64.1
AKS68945.1\|1091786_1093043_-	hypothetical protein	A0A2H4PQX1	Staphylococcus_phage	3.5e-32	69.5

DBSCAN-SWA_3

1207390 : 1218724

uncultured_Mediterranean_phage(57.14%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69039.1\|1207390_1208389_+	ATP-dependent DNA helicase RuvB	E3T4M7	Cafeteria_roenbergensis_virus	2.6e-06	27.1
AKS69040.1\|1208406_1209432_+\|tRNA	S-adenosylmethionine tRNA ribosyltransferase	NA	NA	NA	NA
AKS69041.1\|1209449_1210589_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-87	45.5
AKS69042.1\|1210605_1210869_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.8e-07	45.7
AKS69043.1\|1211007_1213287_+	preprotein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	6.1e-27	31.6
AKS70249.1\|1213395_1215678_+	single-stranded-DNA exonuclease	A7KV88	Bacillus_phage	2.4e-68	29.0
AKS69044.1\|1215691_1216210_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.2e-26	48.0
AKS69045.1\|1216534_1218724_+	GTP pyrophosphokinase	A0A1B1IUF0	uncultured_Mediterranean_phage	7.7e-11	36.5

DBSCAN-SWA_4

1351084 : 1360079

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69177.1\|1351084_1351813_+	segregation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.8e-10	30.6
AKS69178.1\|1351802_1352345_+	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	3.9e-09	32.7
AKS69179.1\|1352344_1353088_+	pseudouridine synthase	NA	NA	NA	NA
AKS70256.1\|1353382_1354108_+	transcriptional regulator	W8CYM9	Bacillus_phage	1.6e-45	40.9
AKS69180.1\|1354091_1355834_+	histidine kinase	Q8QKV4	Ectocarpus_siliculosus_virus	4.4e-09	25.0
AKS69181.1\|1356545_1357091_+	riboflavin transporter RibU	NA	NA	NA	NA
AKS69182.1\|1357412_1357661_-	ferredoxin	A0A127AYY7	Bacillus_phage	2.3e-17	53.3
AKS69183.1\|1357765_1358710_+	hypothetical protein	NA	NA	NA	NA
AKS69184.1\|1358702_1360079_+	ATP-dependent DNA helicase RecQ	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	3.9e-53	33.2

DBSCAN-SWA_5

1440739 : 1481610

Staphylococcus_phage(82.0%)

portal,tail,head,capsid,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69261.1\|1440739_1442137_-	hypothetical protein	A0A2H4JD28	uncultured_Caudovirales_phage	3.3e-132	51.4
AKS69262.1\|1442195_1442672_-	hypothetical protein	A0A2H4J2Y4	uncultured_Caudovirales_phage	4.7e-22	92.7
AKS69263.1\|1442724_1443351_-	transcriptional regulator	A0A1J0MG99	Staphylococcus_phage	5.2e-98	88.9
AKS69264.1\|1443501_1443726_+	XRE family transcriptional regulator	Q4ZCB2	Staphylococcus_virus	2.3e-32	91.7
AKS69265.1\|1444032_1444308_+	hypothetical protein	A1KWZ5	Staphylococcus_virus	6.6e-05	34.4
AKS69266.1\|1444668_1444884_+	hypothetical protein	NA	NA	NA	NA
AKS69267.1\|1444876_1445425_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.9e-56	61.5
AKS69268.1\|1445427_1446051_+	single-stranded DNA-binding protein	Q4ZC23	Staphylococcus_virus	1.1e-82	76.8
AKS69269.1\|1446050_1446464_+	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	2.0e-58	84.1
AKS69270.1\|1446474_1447026_+	HNH endonuclease	A0A2H4PQR4	Staphylococcus_phage	1.5e-85	83.6
AKS69271.1\|1447026_1447698_+	phi PV83 orf 19-like protein	A0A1J0MFX6	Staphylococcus_phage	3.9e-115	90.5
AKS69272.1\|1447694_1448399_+	hypothetical protein	A0A1W6JQ30	Staphylococcus_phage	9.6e-40	74.5
AKS69273.1\|1448402_1448756_+	hypothetical protein	A0A1J0MFD5	Staphylococcus_phage	5.5e-28	49.6
AKS69274.1\|1448748_1449987_+	damage-inducible protein	A0A1J0MFK7	Staphylococcus_phage	8.8e-198	82.6
AKS69275.1\|1449983_1450202_+	hypothetical protein	A0A1J0MFB5	Staphylococcus_phage	1.1e-23	75.0
AKS69276.1\|1450188_1450602_+	Holliday junction resolvase	A0A223LGP3	Staphylococcus_phage	1.8e-67	92.4
AKS69277.1\|1450606_1450906_+	hypothetical protein	A0A223LH51	Staphylococcus_phage	4.3e-34	72.7
AKS69278.1\|1450898_1451081_+	hypothetical protein	Q4ZD43	Staphylococcus_phage	1.0e-22	86.0
AKS69279.1\|1451526_1451715_+	hypothetical protein	A0A223LFJ6	Staphylococcus_phage	6.1e-18	77.6
AKS69280.1\|1451711_1451933_+	hypothetical protein	A0A2H4JCB3	uncultured_Caudovirales_phage	2.1e-09	44.9
AKS70259.1\|1451952_1452198_+	hypothetical protein	A0A1J0MG61	Staphylococcus_phage	2.2e-23	72.3
AKS69281.1\|1452197_1452593_+	hypothetical protein	Q4ZC09	Staphylococcus_virus	1.8e-24	47.3
AKS69282.1\|1453016_1453352_+	hypothetical protein	A0A249Y1R7	Staphylococcus_phage	1.2e-05	31.9
AKS69283.1\|1453885_1454035_+	phage-like protein	Q4ZD32	Staphylococcus_phage	4.4e-11	80.9
AKS69284.1\|1454031_1454202_+	transcriptional regulator	A0A1J0MFF2	Staphylococcus_phage	1.3e-11	72.7
AKS69285.1\|1454201_1454429_+	hypothetical protein	Q4ZD29	Staphylococcus_phage	1.3e-25	80.0
AKS69286.1\|1454567_1454990_+	transcriptional regulator	A0A1J0MFW0	Staphylococcus_phage	1.2e-61	84.3
AKS69287.1\|1455220_1455589_+	hypothetical protein	A0A1J0MFN7	Staphylococcus_phage	1.5e-39	66.7
AKS69288.1\|1455579_1455960_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	6.1e-57	83.1
AKS69289.1\|1456030_1456501_+\|terminase	terminase	A0A1J0MG04	Staphylococcus_phage	7.0e-71	87.8
AKS69290.1\|1456500_1458204_+\|terminase	terminase	A0A1J0MGD9	Staphylococcus_phage	1.2e-298	87.8
AKS69291.1\|1458215_1458413_+	membrane protein	A0A1J0MFN2	Staphylococcus_phage	3.4e-19	83.1
AKS69292.1\|1458418_1459693_+\|portal	portal protein	A0A1J0MFU3	Staphylococcus_phage	2.7e-226	92.7
AKS69293.1\|1459667_1460240_+	peptidase U35	A0A1J0MFL1	Staphylococcus_phage	6.3e-98	92.1
AKS69294.1\|1460325_1461555_+\|capsid	capsid protein	A0A1J0MFW8	Staphylococcus_phage	5.1e-198	89.5
AKS69295.1\|1461737_1462037_+\|head,tail	phage head-tail adapter protein	A0A1J0MFU4	Staphylococcus_phage	3.8e-38	78.5
AKS69296.1\|1462008_1462341_+\|head,tail	head-tail adaptor protein	A0A1J0MG09	Staphylococcus_phage	2.3e-44	71.8
AKS69297.1\|1462340_1462718_+	HK97 gp10 family phage protein	A0A1J0MGE3	Staphylococcus_phage	1.0e-43	69.7
AKS69298.1\|1462714_1463077_+	hypothetical protein	A0A1J0MFP0	Staphylococcus_phage	3.0e-45	70.0
AKS69299.1\|1463088_1464030_+	hypothetical protein	A0A1J0MFV0	Staphylococcus_phage	1.8e-142	81.5
AKS69300.1\|1464096_1464543_+	hypothetical protein	A0A1J0MFL9	Staphylococcus_phage	2.5e-38	54.7
AKS69301.1\|1464743_1469897_+	hypothetical protein	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	58.0
AKS69302.1\|1469896_1471387_+\|tail	phage tail protein	Q4ZD64	Staphylococcus_phage	1.2e-241	82.2
AKS69303.1\|1471402_1475962_+	hypothetical protein	Q4ZD63	Staphylococcus_phage	0.0e+00	51.8
AKS69304.1\|1476173_1476455_+	hypothetical protein	A0A1J0MFP4	Staphylococcus_phage	2.0e-36	83.5
AKS69305.1\|1476477_1476771_+	hypothetical protein	A0A1W6JPB3	Staphylococcus_phage	1.6e-28	69.5
AKS69306.1\|1476907_1477201_+\|holin	holin	A0A2I6PET6	Staphylococcus_phage	4.3e-26	62.8
AKS69307.1\|1477215_1478643_+	amidase	W5RAM3	Staphylococcus_phage	3.4e-169	62.0
AKS69308.1\|1478826_1479600_+	hypothetical protein	Q4ZAU0	Staphylococcus_virus	8.0e-48	40.6
AKS69309.1\|1479605_1480334_+	hypothetical protein	E0Y3N3	Staphylococcus_virus	3.4e-40	39.2
AKS69310.1\|1480571_1481045_+	hypothetical protein	NA	NA	NA	NA
AKS70260.1\|1481214_1481610_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.5e-21	44.1

DBSCAN-SWA_6

1590474 : 1648121

Streptococcus_phage(15.38%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69394.1\|1590474_1592022_-\|tRNA	(dimethylallyl)adenosine tRNA methylthiotransferase	NA	NA	NA	NA
AKS69395.1\|1592121_1592424_-	hypothetical protein	NA	NA	NA	NA
AKS69396.1\|1592635_1593502_-	2-oxoacid ferredoxin oxidoreductase	NA	NA	NA	NA
AKS69397.1\|1593502_1595263_-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA
AKS69398.1\|1595412_1596207_-	metallophosphoesterase	NA	NA	NA	NA
AKS69399.1\|1596536_1598699_-	cadmium transporter	E4ZFI9	Streptococcus_phage	1.7e-196	52.4
AKS69400.1\|1598682_1599066_-	ArsR family transcriptional regulator	E4ZFI8	Streptococcus_phage	4.0e-32	60.2
AKS69401.1\|1599264_1599483_+	hypothetical protein	NA	NA	NA	NA
AKS69402.1\|1599604_1601164_-	ribonuclease	NA	NA	NA	NA
AKS69403.1\|1601455_1602499_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.8e-125	65.2
AKS69404.1\|1602664_1603813_-	damage-inducible protein CinA	NA	NA	NA	NA
AKS69405.1\|1604059_1604647_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AKS69406.1\|1604687_1605083_-	transcriptional regulator	NA	NA	NA	NA
AKS69407.1\|1605103_1605949_-	hypothetical protein	NA	NA	NA	NA
AKS69408.1\|1606003_1606708_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AKS69409.1\|1606704_1607994_-\|protease	zinc protease	G3MBJ8	Bacillus_virus	1.2e-16	28.2
AKS69410.1\|1607995_1609261_-\|protease	zinc protease	NA	NA	NA	NA
AKS69411.1\|1609297_1610014_-	transcriptional regulator	NA	NA	NA	NA
AKS69412.1\|1610017_1612381_-	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	2.4e-87	49.3
AKS69413.1\|1612517_1614191_-	Zn-dependent hydrolase	NA	NA	NA	NA
AKS69414.1\|1614300_1614570_+	hypothetical protein	NA	NA	NA	NA
AKS69415.1\|1614561_1616661_-	polynucleotide phosphorylase	NA	NA	NA	NA
AKS69416.1\|1616811_1617081_-	30S ribosomal protein S15	NA	NA	NA	NA
AKS69417.1\|1617183_1618155_-	riboflavin biosynthesis protein RibF	A0A1V0SJE1	Klosneuvirus	4.1e-09	32.6
AKS69418.1\|1618170_1619088_-\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
AKS69419.1\|1619168_1619513_-	ribosome-binding factor A	NA	NA	NA	NA
AKS69420.1\|1620520_1621270_-	hypothetical protein	NA	NA	NA	NA
AKS69421.1\|1622282_1623512_-	hypothetical protein	NA	NA	NA	NA
AKS69422.1\|1623501_1623942_-	hypothetical protein	NA	NA	NA	NA
AKS69423.1\|1625186_1625369_-	hypothetical protein	NA	NA	NA	NA
AKS69424.1\|1625514_1625811_-	hypothetical protein	A0A1Q1PVY9	Staphylococcus_phage	4.0e-08	42.7
AKS69425.1\|1625823_1626018_-	hypothetical protein	A0A0C5AEB1	Paenibacillus_phage	1.5e-16	66.7
AKS69426.1\|1626010_1626193_-\|transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	1.1e-13	58.6
AKS69427.1\|1626400_1626592_+	hypothetical protein	NA	NA	NA	NA
AKS69428.1\|1626800_1628903_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	3.2e-22	25.8
AKS69429.1\|1628919_1629225_-	50S ribosomal protein L7	NA	NA	NA	NA
AKS69430.1\|1629221_1629509_-	DNA-binding protein	NA	NA	NA	NA
AKS69431.1\|1629521_1630667_-	transcription elongation factor NusA	NA	NA	NA	NA
AKS69432.1\|1630685_1631153_-	ribosome maturation protein RimP	NA	NA	NA	NA
AKS69433.1\|1631276_1635584_-	DNA polymerase III PolC	A0A0A7RWA3	Clostridium_phage	1.2e-20	36.1
AKS69434.1\|1635793_1637500_-\|tRNA	prolyl-tRNA synthetase	NA	NA	NA	NA
AKS69435.1\|1637525_1638806_-\|protease	zinc metalloprotease	NA	NA	NA	NA
AKS69436.1\|1638811_1639942_-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	NA	NA	NA	NA
AKS69437.1\|1639961_1640744_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AKS69438.1\|1640758_1641520_-	UDP pyrophosphate synthase	R9W0U9	Flavobacterium_phage	3.7e-21	38.2
AKS69439.1\|1641850_1642405_-	ribosome recycling factor	NA	NA	NA	NA
AKS69440.1\|1642423_1643146_-	uridylate kinase	NA	NA	NA	NA
AKS69441.1\|1643296_1644175_-	elongation factor Ts	NA	NA	NA	NA
AKS69442.1\|1644398_1645196_-	30S ribosomal protein S2	NA	NA	NA	NA
AKS69443.1\|1645360_1646134_-	transcriptional repressor CodY	NA	NA	NA	NA
AKS69444.1\|1646153_1647563_-\|protease	ATP-dependent protease	A0A1B2IEP8	Erwinia_phage	9.9e-28	24.4
AKS69445.1\|1647578_1648121_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_7

1830083 : 1838503

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69598.1\|1830083_1830650_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-26	37.4
AKS69599.1\|1830646_1831681_-	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	7.7e-62	41.5
AKS69600.1\|1831684_1833106_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.3e-50	33.6
AKS69601.1\|1833084_1835274_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	4.0e-137	39.5
AKS69602.1\|1835266_1835938_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AKS69603.1\|1835939_1836200_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AKS69604.1\|1836202_1836904_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.3e-48	42.1
AKS69605.1\|1836900_1838034_-	phosphoribosylaminoimidazole carboxylase	NA	NA	NA	NA
AKS69606.1\|1838020_1838503_-	phosphoribosylaminoimidazole carboxylase	A0A2P0VNU7	Tetraselmis_virus	1.0e-21	44.7

DBSCAN-SWA_8

2007392 : 2054126

Staphylococcus_phage(53.7%)

protease,portal,head,tail,capsid,integrase,terminase

attL 2029393:2029407|attR 2051424:2051438

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69744.1\|2007392_2008079_-\|protease	protease	NA	NA	NA	NA
AKS70277.1\|2008559_2008946_-	hypothetical protein	NA	NA	NA	NA
AKS69745.1\|2009124_2009598_-	hypothetical protein	NA	NA	NA	NA
AKS69746.1\|2009881_2011339_-	autolysin	Q4ZCC3	Staphylococcus_virus	2.0e-209	68.2
AKS69747.1\|2011791_2012187_-	phi ETA orf 63-like protein	A0A0H4IPB8	Staphylococcus_phage	2.2e-46	66.9
AKS70278.1\|2012191_2013496_-\|tail	tail protein	Q4ZB96	Staphylococcus_virus	9.8e-131	64.2
AKS69748.1\|2013508_2015398_-	cell wall hydrolase	Q4ZC50	Staphylococcus_virus	3.2e-231	62.7
AKS69749.1\|2015531_2015906_-	hypothetical protein	A0A1J0MG33	Staphylococcus_phage	6.6e-40	75.0
AKS69750.1\|2016070_2016445_-	hypothetical protein	A0A2H4J2S0	uncultured_Caudovirales_phage	4.1e-05	38.8
AKS69751.1\|2016450_2018037_-	hypothetical protein	D7RWE2	Brochothrix_phage	7.0e-30	37.2
AKS69752.1\|2018038_2019994_-	hypothetical protein	A0A0A0RNC0	Bacillus_phage	2.8e-36	25.9
AKS69753.1\|2019993_2021859_-	peptidase	Q4ZC57	Staphylococcus_virus	1.4e-252	69.6
AKS69754.1\|2021871_2022810_-\|tail	phage tail protein	Q4ZC58	Staphylococcus_virus	9.5e-120	68.6
AKS69755.1\|2022828_2025858_-\|terminase	terminase	M9NRJ5	Staphylococcus_phage	1.5e-195	55.4
AKS69756.1\|2025871_2026153_-	hypothetical protein	A0A1W6JQT4	Staphylococcus_phage	2.6e-20	56.0
AKS69757.1\|2026215_2026719_-	hypothetical protein	Q4ZC62	Staphylococcus_virus	1.4e-45	54.5
AKS69758.1\|2026788_2027322_-\|tail	tail protein	A0A1W6JQQ8	Staphylococcus_phage	1.0e-78	84.3
AKS69759.1\|2027325_2027748_-	phage protein	Q4ZBQ9	Staphylococcus_phage	2.8e-55	77.9
AKS69760.1\|2027759_2028173_-	HK97 gp10 family phage protein	Q4ZCE4	Staphylococcus_virus	1.6e-63	80.9
AKS69761.1\|2028159_2028495_-\|head,tail	phage head-tail adapter protein	A0A2H4JBX6	uncultured_Caudovirales_phage	4.7e-37	67.3
AKS69762.1\|2028496_2028793_-\|head,tail	phage head-tail adapter protein	Q4ZCE6	Staphylococcus_virus	9.2e-37	72.4
AKS70279.1\|2028792_2029071_-	Rho termination protein	Q4ZCE7	Staphylococcus_virus	2.4e-26	60.9
AKS69763.1\|2029093_2030026_-	sugar-binding protein	A0A1W6JPD7	Staphylococcus_phage	1.6e-138	82.1
2029393:2029407	attL	NA	NA	NA	NA
AKS69764.1\|2030037_2030568_-	hypothetical protein	Q4ZBR6	Staphylococcus_phage	5.9e-34	78.5
AKS69765.1\|2030658_2031603_-\|capsid	phage capsid protein	Q4ZC73	Staphylococcus_virus	5.6e-136	74.5
AKS69766.1\|2031571_2032990_-\|portal	phage portal protein	Q4ZC74	Staphylococcus_virus	2.0e-246	85.4
AKS69767.1\|2032994_2034260_-\|terminase	terminase	Q4ZC75	Staphylococcus_virus	6.2e-231	91.4
AKS69768.1\|2034243_2034732_-\|terminase	terminase	Q4ZAI5	Staphylococcus_virus	4.1e-66	76.5
AKS69769.1\|2034993_2035428_-	transcriptional regulator	A0A1J0MFW0	Staphylococcus_phage	2.3e-60	83.6
AKS69770.1\|2035603_2035831_-	hypothetical protein	Q4ZD29	Staphylococcus_phage	2.2e-22	74.6
AKS69771.1\|2035821_2036001_-	transcriptional regulator	A0A1J0MFF2	Staphylococcus_phage	1.1e-11	72.7
AKS69772.1\|2035997_2036147_-	phage-like protein	Q4ZD32	Staphylococcus_phage	4.4e-11	80.9
AKS69773.1\|2036210_2036747_-	dUTPase	R4IG63	Staphylococcus_phage	4.8e-76	78.7
AKS69774.1\|2036761_2037097_-	hypothetical protein	A0A249Y1R7	Staphylococcus_phage	3.6e-05	31.9
AKS69775.1\|2037519_2037915_-	hypothetical protein	Q4ZC09	Staphylococcus_virus	3.2e-24	45.0
AKS70280.1\|2037914_2038160_-	hypothetical protein	A0A1J0MG61	Staphylococcus_phage	2.2e-23	72.3
AKS69776.1\|2038179_2038401_-	hypothetical protein	A0A2H4JCB3	uncultured_Caudovirales_phage	9.4e-10	44.9
AKS69777.1\|2038397_2039075_-	hypothetical protein	A0A2H4J9K3	uncultured_Caudovirales_phage	3.0e-75	59.9
AKS70281.1\|2039077_2039326_-	phage protein	A0A2H4J3I9	uncultured_Caudovirales_phage	6.3e-31	81.6
AKS69778.1\|2039679_2039982_-	hypothetical protein	A0A223LH51	Staphylococcus_phage	3.4e-34	72.0
AKS69779.1\|2039986_2040400_-	Holliday junction resolvase	A0A223LGP3	Staphylococcus_phage	1.4e-67	92.4
AKS69780.1\|2040564_2041341_-	DNA replication protein DnaC	Q4ZC96	Staphylococcus_virus	1.3e-106	74.4
AKS69781.1\|2041343_2042111_-	replication protein	W5R8N2	Staphylococcus_phage	8.2e-77	74.2
AKS69782.1\|2042935_2043610_-	phi PV83 orf 19-like protein	A0A1J0MFX6	Staphylococcus_phage	3.9e-115	89.3
AKS69783.1\|2043780_2044203_-	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	5.5e-67	89.7
AKS69784.1\|2044202_2044871_-	single-stranded DNA-binding protein	A0A1J0MF78	Staphylococcus_phage	1.6e-113	93.7
AKS69785.1\|2044874_2045423_-	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.1e-56	61.5
AKS69786.1\|2045415_2045670_-	hypothetical protein	A0A0H3U2S3	Staphylococcus_phage	9.1e-09	40.5
AKS69787.1\|2045865_2046126_-	hypothetical protein	A0A223LGR0	Staphylococcus_phage	9.0e-12	40.0
AKS69788.1\|2046371_2046596_-	hypothetical protein	A0A223LG98	Staphylococcus_phage	4.8e-30	89.2
AKS69789.1\|2046609_2047365_-	Rha family transcriptional regulator	I6TJS0	Staphylococcus_virus	1.6e-117	86.3
AKS69790.1\|2047509_2047755_-	XRE family transcriptional regulator	A0A2I6PED6	Staphylococcus_phage	1.1e-30	84.4
AKS69791.1\|2047918_2048242_+	Cro/Cl family transcriptional regulator	A0A141VTQ4	Staphylococcus_phage	2.7e-42	82.2
AKS69792.1\|2048254_2048713_+	toxin	A0A2H4JE34	uncultured_Caudovirales_phage	1.9e-52	61.8
AKS69793.1\|2048731_2049226_+	hypothetical protein	Q4ZBN8	Staphylococcus_phage	4.5e-36	48.1
AKS69794.1\|2049227_2049770_+	hypothetical protein	NA	NA	NA	NA
AKS69795.1\|2049833_2050883_+\|integrase	integrase	A0A1J0MF14	Staphylococcus_phage	1.5e-193	96.0
AKS69796.1\|2050950_2052348_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
2051424:2051438	attR	NA	NA	NA	NA
AKS69797.1\|2052445_2052895_-	nitrogen fixation protein NifU	NA	NA	NA	NA
AKS70282.1\|2052884_2054126_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.6e-117	48.0

DBSCAN-SWA_9

2129578 : 2139288

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKS69863.1\|2129578_2131684_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	87.0
AKS69864.1\|2131646_2132045_-	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	1.8e-43	63.6
AKS69865.1\|2132668_2133556_+	membrane protein	NA	NA	NA	NA
AKS69866.1\|2133571_2134072_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	4.1e-53	71.7
AKS69867.1\|2134479_2135985_+	peptide transporter	A0A0P0IY73	Acinetobacter_phage	1.6e-68	34.4
AKS69868.1\|2136666_2138169_+	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	5.3e-64	33.8
AKS69869.1\|2138358_2139288_+	lipid kinase	A0A1V0SBJ0	Catovirus	5.9e-13	25.5

Anti-CRISPR protein detection

Acr_ID: Acr_1

Acr_ID

Acr_info

Acr size

Homology with known anti

Neighbor Aca

In prophage

ST in prophage

Neighbor HTH

Preidct by AcRanker

Acr_1

CP009676.1|AKS70260.1|1481214_1481610_+|hypothetical-protein

131 aa

AcrIIA13

hit Aca	identity	query_coverage	hit_coverage
anti_CRISPR3628\|WP_050337628.1\|AcrIIA13\|II-A\|Verified\|Staphylococcus-schleiferi	1.0	1	1.0

Aca8

Distance	Protein ID	Hit Aca	Identity	Query coverage	Hit coverage
0	CP009676.1\|AKS69310.1\|1480571_1481045_+\|hypothetical-protein	AcrIIA13\|AcrIIA14\|AcrIIA15-Aca8\|WP_050337584.1	1.0	1	1.0

1440739-1481610

Distance	Protein ID	HTH_info	Identity	query_coverage	hit_coverage

Click the colored protein region to show detailed information

Acr_ID: Acr_2

Acr_ID

Acr_info

Acr size

Homology with known anti

Neighbor Aca

In prophage

ST in prophage

Neighbor HTH

Preidct by AcRanker

Acr_2

CP009676.1|AKS70277.1|2008559_2008946_-|hypothetical-protein

128 aa

AcrIIA13

hit Aca	identity	query_coverage	hit_coverage
anti_CRISPR3628\|WP_050337628.1\|AcrIIA13\|II-A\|Verified\|Staphylococcus-schleiferi	0.734375	1	0.9770992366412213

Aca8

Distance	Protein ID	Hit Aca	Identity	Query coverage	Hit coverage
0	CP009676.1\|AKS69745.1\|2009124_2009598_-\|hypothetical-protein	AcrIIA13\|AcrIIA14\|AcrIIA15-Aca8\|WP_050337584.1	0.9299363057324841	1	1.0

2007392-2054126

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP009676_1	orTypeII	1.2\|1545091\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545091-1545120	30	2010031-2010060	1
CP009676_1	orTypeII	1.9\|1545553\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545553-1545582	30	2019993-2020022	0
CP009676_1	orTypeII	1.12\|1545751\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545751-1545780	30	2032867-2032896	0
CP009676_1	orTypeII	1.13\|1545817\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545817-1545846	30	2017992-2018021	1
CP009676_1	orTypeII	1.14\|1545883\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1545883-1545912	30	2047099-2047070	0
CP009676_1	orTypeII	1.16\|1546015\|30\|CP009676\|CRISPRCasFinder,CRT,PILER-CR	1546015-1546044	30	2036492-2036521	0

1. spacer 1.2|1545091|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to CP009676 position: 2010031-2010060, mismatch: 1

accagccaccaggttggaacagatacccta	CRISPR spacer
accaaccaccaggttggaacagatacccta	Protospacer
****.*************************

2. spacer 1.9|1545553|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to CP009676 position: 2019993-2020022, mismatch: 0

atcagttgcctcctttgttatcgtaaaaca	CRISPR spacer
atcagttgcctcctttgttatcgtaaaaca	Protospacer
******************************

3. spacer 1.12|1545751|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to CP009676 position: 2032867-2032896, mismatch: 0

tagtttttttatggtctgtaatcaacctta	CRISPR spacer
tagtttttttatggtctgtaatcaacctta	Protospacer
******************************

4. spacer 1.13|1545817|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to CP009676 position: 2017992-2018021, mismatch: 1

gtggaattgtagcaatcttattaggtcttg	CRISPR spacer
gtgcaattgtagcaatcttattaggtcttg	Protospacer
*** **************************

5. spacer 1.14|1545883|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to CP009676 position: 2047099-2047070, mismatch: 0

aatggcttacattaacaaattcaacgaaat	CRISPR spacer
aatggcttacattaacaaattcaacgaaat	Protospacer
******************************

6. spacer 1.16|1546015|30|CP009676|CRISPRCasFinder,CRT,PILER-CR matches to CP009676 position: 2036492-2036521, mismatch: 0

gtgtaactcctacttgattcgcaacactca	CRISPR spacer
gtgtaactcctacttgattcgcaacactca	Protospacer
******************************

Distance	Protein ID	HTH_info	Identity	query_coverage	hit_coverage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP009676

Click the left colored region to show detailed information

Crispr-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information