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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Signature genes Novel effector protein number
QEUN01000017 Armatimonadetes bacterium isolate ATM2 J3_scaffold_372, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000024 Armatimonadetes bacterium isolate ATM2 J3_scaffold_6810, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000027 Armatimonadetes bacterium isolate ATM2 J3_scaffold_11379, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000028 Armatimonadetes bacterium isolate ATM2 J3_scaffold_11528, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000004 Armatimonadetes bacterium isolate ATM2 J3_scaffold_49, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000019 Armatimonadetes bacterium isolate ATM2 J3_scaffold_655, whole genome shotgun sequence 0 CRISPR TnsC 0
QEUN01000029 Armatimonadetes bacterium isolate ATM2 J3_scaffold_57135, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000011 Armatimonadetes bacterium isolate ATM2 J3_scaffold_186, whole genome shotgun sequence 1 CRISPR NA 0
QEUN01000005 Armatimonadetes bacterium isolate ATM2 J3_scaffold_82, whole genome shotgun sequence 0 CRISPR csa3 0
QEUN01000015 Armatimonadetes bacterium isolate ATM2 J3_scaffold_365, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000018 Armatimonadetes bacterium isolate ATM2 J3_scaffold_482, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000014 Armatimonadetes bacterium isolate ATM2 J3_scaffold_278, whole genome shotgun sequence 1 CRISPR cas1,cas2,cas4,cas3 1
QEUN01000003 Armatimonadetes bacterium isolate ATM2 J3_scaffold_40, whole genome shotgun sequence 3 CRISPRs RT,TnsC 0
QEUN01000006 Armatimonadetes bacterium isolate ATM2 J3_scaffold_110, whole genome shotgun sequence 0 CRISPR TnsC 0
QEUN01000022 Armatimonadetes bacterium isolate ATM2 J3_scaffold_1545, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000025 Armatimonadetes bacterium isolate ATM2 J3_scaffold_7526, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000010 Armatimonadetes bacterium isolate ATM2 J3_scaffold_173, whole genome shotgun sequence 2 CRISPRs NA 0
QEUN01000013 Armatimonadetes bacterium isolate ATM2 J3_scaffold_237, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000020 Armatimonadetes bacterium isolate ATM2 J3_scaffold_870, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000001 Armatimonadetes bacterium isolate ATM2 J3_scaffold_15, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000002 Armatimonadetes bacterium isolate ATM2 J3_scaffold_35, whole genome shotgun sequence 0 CRISPR Cas9_archaeal 0
QEUN01000021 Armatimonadetes bacterium isolate ATM2 J3_scaffold_1357, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000023 Armatimonadetes bacterium isolate ATM2 J3_scaffold_3419, whole genome shotgun sequence 1 CRISPR RT 0
QEUN01000016 Armatimonadetes bacterium isolate ATM2 J3_scaffold_370, whole genome shotgun sequence 1 CRISPR NA 0
QEUN01000009 Armatimonadetes bacterium isolate ATM2 J3_scaffold_143, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000012 Armatimonadetes bacterium isolate ATM2 J3_scaffold_204, whole genome shotgun sequence 0 CRISPR csa3 0
QEUN01000026 Armatimonadetes bacterium isolate ATM2 J3_scaffold_9253, whole genome shotgun sequence 0 CRISPR NA 0
QEUN01000007 Armatimonadetes bacterium isolate ATM2 J3_scaffold_115, whole genome shotgun sequence 0 CRISPR casR,cas3 0
QEUN01000008 Armatimonadetes bacterium isolate ATM2 J3_scaffold_138, whole genome shotgun sequence 0 CRISPR NA 0

Results visualization

1. QEUN01000014
Novel effector protein group ID: 1

Group ID Candidate ID Protein size Protein distance Strain info CRISPR_ID Homolog(s)
1 QEUN01000014.1|RIJ98969.1|51295_53869_+|hypothetical-protein 857 aa 3 Armatimonadetes bacterium isolate ATM2 J3_scaffold_278 QEUN01000014_1 1
Click the colored protein region to show detailed information
Group ID Candidate ID Protein size Protein distance Strain info CRISPR_ID Homolog(s)
1 RHKV01000006.1|KAA0225664.1|[187352:189956](+)|hypothetical_protein 867 aa 3 Armatimonadetes bacterium isolate ARM2 N2_1.scaffold_15, whole genome shotgun sequence RHKV01000006_1 Homolog protein of candidate
Click the colored protein region to show detailed information

Novel class2 CRISPR loci

CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas protein info
QEUN01000014_1 56374-57741 Unclear NA
18 spacers
cas1,cas2,cas4
RHKV01000006_1 192391-195093 Unclear NA
36 spacers
cas1,cas2,cas4

You can click texts colored in the table to view more detailed information

Novel effector protein sequence

>QEUN01000014.1|RIJ98969.1|51295_53869_+|hypothetical-protein
MSPLERSLRKVGENRLERLRVREEKIRKHIEQHPRGKNDHQALHFLLHQIEVERNDLYRNLKDPEYVPKPAKQRRERRQINVAKPPTRPKKEKGPQPESTKYVIRPPVPGKNLPAFASKYEARDTRDDSYQDGRSWTSAPYVEVELPILGADKVIQKLMKFVQKDERSIVRDWATKTYSSIEAAREALLVGAQVSEDVSVWRGLLAETKNAQNFAALSDDQIEAAMSKEAKGADLRPRRAALLVAQRHWVDQTVKAIKESAPSGVDKDTLDRRLRAGLRGFHTAANSGKHTNPQFPYLTAEKPVVPMESVVQSVLAFLDDPDDQRYTKDKEDDKKRHRVTVLQKELGKARPRKRLELQTPKWAGRPTVKGTISKRRDAALVWDTSKEANGLCLALPIGGMPKIDVEQFIYQDGTSLLSDCQIASKTTKKGAACAVLPLKPKHDFLRWFTKHVENHNPDAPLERRCLHNTTQFVIVDPEGPRPRLFVRPVFKFYDPGKTVPNTHETWKKPDCRYLVGIDRGINYVLRAVVVDTEEKKVIADIGLPGRKHEWRMIRDEIAYHQQMRDLARNTGKHASVVAKHVRALALARKKDRALGKFATVEAVAELVKKCEQDYGSGNYCFVLEDLDMGAMNLKRNNRVKHMAVMEEALVNQMRKQGYAYDGRRGRVDGVRHEGAWYTSQVSPFGWWAKRDEVEEAWKRDKTRPIGRKVGNWYEMPEPGQDGDRPDTYRKGYWSKPKNAEGKPYGRNRFSVEPGDEKPDAERRFCWGSELFWDPNVKSFKGKEFPEGVVLDADFVGALNIALRPLVNDGQGKGFKAEDMAREHTILNPQFKIACQIPVYEFVEEDGDKWAALRRIML
>|RHKV01000006.1|KAA0225664.1|[187352:189956](+)|hypothetical_protein|149|867|GCA_008363305.1_ASM836330v1
MAKATKEVKSKRVEALRQVAYQRLERLERKAQKIGAHLRKPGKAADLQSLHYLLHKVEVEYHDIARNLEKDPTWTPKPKMRREKRAIVPESGPAAPLPTTAKGEPGRPANRHIPPPVPLDSARIPEDQQSMGQGSGGRSWCSAPFVEVKLPPTQWSNVREKLLKFRIEDDADIVRRWAEAKFGSIETARDGLRASAEIGTSPDVWRSFISRAISNGKKDFEPLLSLDDDELTADATAERVVRRWHQIDWVGRMLDSILETVPSGVSKDTFRSRVESRLKTFHSSVNSFELKKRKDGTVERKRKHTNPQFPYLSPSAVSIDPDVVTMEAVELLQMQPEERFAKDPNDANGRMRLRVLQAELGKARREALGRRGEKAPPWSGRKVFRGTTTRKREACLVWDKEAQADGLYFALVMSGGPKIDDKRFVYMDGQPLQSDWQLHNGVAGKAKSCRAMPLILKHDFLRWYHRHIKNHDVNAPLEKRCVHTTTQFVFVEPDEKKGLQPRLFIRPVFKFYDPVYEVPDSHSIDKKPDCRYLIGIDRGVNYPYRAAVYDCETNSIIADKFVDGRKADWERIRNELAYHQRRRDLLRNSRASSAAIQREIRAIARIRKRERGLNKVETVESIARLVDWAEENLGKCNYCFVLEDLSSNLNLGRNNRVKHIAAIKEALINQMRKRGYRFKKSGKVDGVREESAWYTSAVAPSGWWAKKEEVDGAWKADKTRPLARKIGSYYCCEEIDGLHLRGVLKGLGRAKRLVLQSDDPSAPTRRRGFGSELFWDPYCTELCGHAFPQGVVLDADFIGAFNIALRPLVREELGKKAKAVDLADRHQTLNPTVALRCGVTAYEFVEVGGDPRGGLRKILLNPAEAVI

Repeat information

CRISPR_ID CRISPR_type repeat_type Consensus_repeat Method
QEUN01000014_1 Unclear NA GTCGCAGGGGATCAAGAACGCTCTTAGGGAATGAAA PILER-CR
QEUN01000014_1 Unclear NA GTCGCAGGGGATCAAGAACGCTCTTAGGGAATGAAAG CRISPRCasFinder
QEUN01000014_1 Unclear NA GTCGCAGGGGATCAAGAACGCTCTTAGGGAATGAAAG CRT
RHKV01000006_1 Unclear NA GGCGCAGGACAAAATGCACACTCTAAAGGAATGAAAG PILER-CR
RHKV01000006_1 Unclear NA GGCGCAGGACAAAATGCACACTCTAAAGGAATGAAAG CRISPRCasFinder
RHKV01000006_1 Unclear NA GGCGCAGGACAAAATGCACACTCTAAAGGAATGAAAG CRT

Spacer information

>1.1|56410|41|QEUN01000014|PILER-CR
GACGGGCAGTATCGGAGGGCGCGGGAGAGGTGCCAGCCTTC
>1.2|56487|38|QEUN01000014|PILER-CR
GCGTTGCAGGCAATGATCTCTGCAACTGGCCGTCGAAT
>1.3|56561|36|QEUN01000014|PILER-CR
GGGAGTGGGTGCGACTTAAAGCGTTTGACGGTGGCT
>1.4|56633|37|QEUN01000014|PILER-CR
GAAACAAAGACGAATTGCCTGGACGCAGGCAAAATAC
>1.5|56706|39|QEUN01000014|PILER-CR
GATTGCGACAGCCTCGCCTCATTCCAGGCCGACAGGCTG
>1.6|56781|38|QEUN01000014|PILER-CR
GATCGTTCCTGCACGAGAGCGGAGTGAGTCGCCGGGGG
>1.7|56855|38|QEUN01000014|PILER-CR
GGATTACCTAACCACCCCCAGCAGGGCTTCCGGCCCTG
>1.8|56929|40|QEUN01000014|PILER-CR
GGGAGAGACGGGCAGGGAGAATGAACAATGAAAGCGATCC
>1.9|57005|34|QEUN01000014|PILER-CR
GCTCGCCCAACCCTCGGACAGGTTGGGTGGCGGG
>1.10|57075|36|QEUN01000014|PILER-CR
GTTGAACCCGCCAAAGCAGTTCAGCCACGCCGCCAG
>1.11|57147|38|QEUN01000014|PILER-CR
GTATTCCACGCAGCACATCGGAGAACTTGCGTTTCGGT
>1.12|57221|38|QEUN01000014|PILER-CR
GTGCGTAGTGCGAGCGGATCTATCCGAGGTTGACCGGA
>1.13|57295|39|QEUN01000014|PILER-CR
GGTATGCTCCAAGACCTTCGTCGTCGGGTTCCAGGCCAT
>1.14|57370|37|QEUN01000014|PILER-CR
GTGTAATTCTGATACAGGCGCGACCTCACGAGCACCC
>1.15|57443|37|QEUN01000014|PILER-CR
GCATTCTGCGCGGCCTATACATCGAATACCTGCGAAC
>1.16|57516|40|QEUN01000014|PILER-CR
GATTGCCTTCAGCCGCTTAGCCATTCGCTCGGCATAGCAA
>1.17|57592|39|QEUN01000014|PILER-CR
GTTTGCCGGCCGAGACGTGCCACCGCCTAGTCAGGCGAT
>1.18|57667|38|QEUN01000014|PILER-CR
GAGGTTTCGGGCCTGGAATACCCGGCACCCGGTCGGAT
>1.19|56411|40|QEUN01000014|CRISPRCasFinder,CRT
ACGGGCAGTATCGGAGGGCGCGGGAGAGGTGCCAGCCTTC
>1.20|56488|37|QEUN01000014|CRISPRCasFinder,CRT
CGTTGCAGGCAATGATCTCTGCAACTGGCCGTCGAAT
>1.21|56562|35|QEUN01000014|CRISPRCasFinder,CRT
GGAGTGGGTGCGACTTAAAGCGTTTGACGGTGGCT
>1.22|56634|36|QEUN01000014|CRISPRCasFinder,CRT
AAACAAAGACGAATTGCCTGGACGCAGGCAAAATAC
>1.23|56707|38|QEUN01000014|CRISPRCasFinder,CRT
ATTGCGACAGCCTCGCCTCATTCCAGGCCGACAGGCTG
>1.24|56782|37|QEUN01000014|CRISPRCasFinder,CRT
ATCGTTCCTGCACGAGAGCGGAGTGAGTCGCCGGGGG
>1.25|56856|37|QEUN01000014|CRISPRCasFinder,CRT
GATTACCTAACCACCCCCAGCAGGGCTTCCGGCCCTG
>1.26|56930|39|QEUN01000014|CRISPRCasFinder,CRT
GGAGAGACGGGCAGGGAGAATGAACAATGAAAGCGATCC
>1.27|57006|33|QEUN01000014|CRISPRCasFinder,CRT
CTCGCCCAACCCTCGGACAGGTTGGGTGGCGGG
>1.28|57076|35|QEUN01000014|CRISPRCasFinder,CRT
TTGAACCCGCCAAAGCAGTTCAGCCACGCCGCCAG
>1.29|57148|37|QEUN01000014|CRISPRCasFinder,CRT
TATTCCACGCAGCACATCGGAGAACTTGCGTTTCGGT
>1.30|57222|37|QEUN01000014|CRISPRCasFinder,CRT
TGCGTAGTGCGAGCGGATCTATCCGAGGTTGACCGGA
>1.31|57296|38|QEUN01000014|CRISPRCasFinder,CRT
GTATGCTCCAAGACCTTCGTCGTCGGGTTCCAGGCCAT
>1.32|57371|36|QEUN01000014|CRISPRCasFinder,CRT
TGTAATTCTGATACAGGCGCGACCTCACGAGCACCC
>1.33|57444|36|QEUN01000014|CRISPRCasFinder,CRT
CATTCTGCGCGGCCTATACATCGAATACCTGCGAAC
>1.34|57517|39|QEUN01000014|CRISPRCasFinder,CRT
ATTGCCTTCAGCCGCTTAGCCATTCGCTCGGCATAGCAA
>1.35|57593|38|QEUN01000014|CRISPRCasFinder,CRT
TTTGCCGGCCGAGACGTGCCACCGCCTAGTCAGGCGAT
>1.36|57668|37|QEUN01000014|CRISPRCasFinder,CRT
AGGTTTCGGGCCTGGAATACCCGGCACCCGGTCGGAT
>GCA_008363305.1_ASM836330v1|1.1|192428|36|RHKV01000006
GGTCACGGCCACGGTGAGCGCGACGGACGTGAGCTC
>GCA_008363305.1_ASM836330v1|1.2|192501|34|RHKV01000006
GAGGGCTGGAAACTCGAAATCCTCGACACGGGCG
>GCA_008363305.1_ASM836330v1|1.3|192572|37|RHKV01000006
GAAAAGAATCGAGACGGCGCAAAGCCGAAAGAATACT
>GCA_008363305.1_ASM836330v1|1.4|192646|37|RHKV01000006
GGTTCTGATAGCCAAGTAGTGCCTCGATTCCCACCCT
>GCA_008363305.1_ASM836330v1|1.5|192720|38|RHKV01000006
ATCAGCTCGAGGGCGTTCGCAAGCGCGACCGCTTCCTC
>GCA_008363305.1_ASM836330v1|1.6|192795|37|RHKV01000006
ACGGAGAGTGGATGCTCTTGGCACGAGAGCGCTGGCA
>GCA_008363305.1_ASM836330v1|1.7|192869|38|RHKV01000006
ACACGACGCGCGGGTGAGCCGCGAGGAGTTCCGGCTGC
>GCA_008363305.1_ASM836330v1|1.8|192944|37|RHKV01000006
AGGCAGATGCGCGGCGGACCATGATCGCGACACTCCT
>GCA_008363305.1_ASM836330v1|1.9|193018|37|RHKV01000006
CTCGTGGAAGTTCCGGAAGCGCTCTTCAGTAGAGAGC
>GCA_008363305.1_ASM836330v1|1.10|193092|37|RHKV01000006
ACAACGCAGCGTCTCGCAACAGGCCGTATCTCGCAGT
>GCA_008363305.1_ASM836330v1|1.11|193166|35|RHKV01000006
GAGCAGAACGCGGCGCAATACGGGAGGGGCGGACC
>GCA_008363305.1_ASM836330v1|1.12|193238|37|RHKV01000006
GGATATGTTTCCGTGAACGCCGGTCGCTCGGACGCCG
>GCA_008363305.1_ASM836330v1|1.13|193312|41|RHKV01000006
TCTTTTAGCGTCGAAAAACCCCGACATTTTTCGCCAAAACC
>GCA_008363305.1_ASM836330v1|1.14|193390|38|RHKV01000006
TGCATAACTCTACCTCGCTAATAGCGCGTGAACGGAAA
>GCA_008363305.1_ASM836330v1|1.15|193465|38|RHKV01000006
GAAGTACAGGGCGTCATTCGTGTCGAACGGATCCGGCA
>GCA_008363305.1_ASM836330v1|1.16|193540|37|RHKV01000006
ACACTCGGCGCGCACTTGCAAGATGAAAGAGCCCCCA
>GCA_008363305.1_ASM836330v1|1.17|193614|37|RHKV01000006
CGAATCGGCCACGTCCACGGCCCCTCAGACGGGTCGA
>GCA_008363305.1_ASM836330v1|1.18|193688|39|RHKV01000006
AGCCGAGCGTCAGGGGTTTCATTCCGTCTCTCCTTTCGC
>GCA_008363305.1_ASM836330v1|1.19|193764|37|RHKV01000006
TTGCAAGTCTCATTCGATTGCCTCCATGATTGCTTGA
>GCA_008363305.1_ASM836330v1|1.20|193838|37|RHKV01000006
CGGCTACGCACGGATGGACTCCGCACGCGTAATCTCT
>GCA_008363305.1_ASM836330v1|1.21|193912|36|RHKV01000006
TAGTCGAATGCGTTTTGATCGCGAATGCGCGTAACG
>GCA_008363305.1_ASM836330v1|1.22|193985|38|RHKV01000006
CCAGCCACTTCCATATCCGTCGATCGCGCGCGAGCAGT
>GCA_008363305.1_ASM836330v1|1.23|194060|36|RHKV01000006
GTAAAGGAGATCGTGGCAGCCGCGACCGCGCTCTTG
>GCA_008363305.1_ASM836330v1|1.24|194133|37|RHKV01000006
TGTGATTGCAGGTCCGAGTGCATCGCTCGCGCATCCT
>GCA_008363305.1_ASM836330v1|1.25|194207|36|RHKV01000006
CGCGTCTCTTATAGGGATCAGTCGGAATCCTCATTA
>GCA_008363305.1_ASM836330v1|1.26|194280|36|RHKV01000006
CAACTGGATGGTCAGAATGCGGTCGTACTCTGTGGG
>GCA_008363305.1_ASM836330v1|1.27|194353|35|RHKV01000006
TGACGACGACGTTCGGCTCGCGATTCTGAATCGCG
>GCA_008363305.1_ASM836330v1|1.28|194425|38|RHKV01000006
TTACCAAAACCGAAACCATTATTGGGAATGGGGAAAAC
>GCA_008363305.1_ASM836330v1|1.29|194500|37|RHKV01000006
ACCCGTCGGTGAACTCGACGAACAAGTCCTCGATGTC
>GCA_008363305.1_ASM836330v1|1.30|194574|38|RHKV01000006
GAGAAGACCCCCGCGAGGCGAAGAACCTGGGCCATCTG
>GCA_008363305.1_ASM836330v1|1.31|194649|38|RHKV01000006
GGATCCTCGAGCCTGAGCAGTAATGGACTGGTCGGAGG
>GCA_008363305.1_ASM836330v1|1.32|194724|38|RHKV01000006
GGTCCGCTGGGCGCTGTCGCACTACGGTCGCTGCCGGC
>GCA_008363305.1_ASM836330v1|1.33|194799|35|RHKV01000006
ACTCCAGGGCCTCCCTGTTGGTGAAGAACAGATAG
>GCA_008363305.1_ASM836330v1|1.34|194871|37|RHKV01000006
TCTTATCTGCCTCCGGCATTTATTTCTTCTTGGGGCG
>GCA_008363305.1_ASM836330v1|1.35|194945|37|RHKV01000006
TCCCTGAGCCCTTGCAAGTCCAGTGAGACGTTGTCGA
>GCA_008363305.1_ASM836330v1|1.36|195019|37|RHKV01000006
TTGTAGACGACGTTCGAGTAGACGCGCGAGCCCGGCA

Maximum likelihood phylogenetic tree of class 2 effector proteins